[ { "id": "O88846-1.61.63", "start_pos": 61, "end_pos": 63, "uniprot_canonical_ac": "O88846-1", "length": 194, "uniprot_id": "RNF4_RAT", "protein_name": "E3 ubiquitin-protein ligase RNF4", "refseq_ac": "NP_062055", "refseq_name": "E3 ubiquitin-protein ligase RNF4", "gene_name": "Rnf4", "gene_names_uniprotkb": "Rnf4; Snurf", "gene_names_refseq": "Rnf4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "RNF4 is a poly-SUMO-specific E3 ubiquitin ligase required for arsenic-induced PML degradation.", "journal": "Nature cell biology", "date": "2008", "authors": "Tatham MH, Geoffroy MC, Shen L, Plechanovova A, Hattersley N, Jaffray EG, Palvimo JJ, Hay RT", "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" } ], "reference": [ { "type": "PubMed", "id": "18408734", "url": "https://glygen.org/publication/PubMed/18408734" } ] } ], "crossref": [ { "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18408734", "url": "https://glygen.org/publication/PubMed/18408734", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "VVV", "start_aa": "V", "up_seq": "ELVETVGDEIVDLTCESLEP", "down_seq": "DLTHNDSVVIVEERRRPRRN", "mutagenesis": [ { "sequence_org": "VVV", "sequence_mut": "AAA", "comment": "No effect. Loss of binding and ubiquitination of poly-SUMO chains; when associated with 40-A--A-43; 50-A--A-53 and 71-A--A-74.", "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" }, { "database": "PubMed", "id": "18408734", "url": "https://glygen.org/publication/PubMed/18408734" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "40", "end_pos": "43" }, { "start_pos": "50", "end_pos": "53" }, { "start_pos": "61", "end_pos": "63" }, { "start_pos": "71", "end_pos": "74" }, { "start_pos": "8", "end_pos": "11" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "98", "end_pos": "98" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O88846-1.40.43", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O88846-1.50.53", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O88846-1.71.74", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O88846-1.71.74", "start_pos": 71, "end_pos": 74, "uniprot_canonical_ac": "O88846-1", "length": 194, "uniprot_id": "RNF4_RAT", "protein_name": "E3 ubiquitin-protein ligase RNF4", "refseq_ac": "NP_062055", "refseq_name": "E3 ubiquitin-protein ligase RNF4", "gene_name": "Rnf4", "gene_names_uniprotkb": "Rnf4; Snurf", "gene_names_refseq": "Rnf4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "RNF4 is a poly-SUMO-specific E3 ubiquitin ligase required for arsenic-induced PML degradation.", "journal": "Nature cell biology", "date": "2008", "authors": "Tatham MH, Geoffroy MC, Shen L, Plechanovova A, Hattersley N, Jaffray EG, Palvimo JJ, Hay RT", "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" } ], "reference": [ { "type": "PubMed", "id": "18408734", "url": "https://glygen.org/publication/PubMed/18408734" } ] } ], "crossref": [ { "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18408734", "url": "https://glygen.org/publication/PubMed/18408734", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "VVIV", "start_aa": "V", "up_seq": "VDLTCESLEPVVVDLTHNDS", "down_seq": "EERRRPRRNGRRLRQDHADS", "mutagenesis": [ { "sequence_org": "VVIV", "sequence_mut": "AAAA", "comment": "No effect. Loss of binding and ubiquitination of poly-SUMO chains; when associated with 40-A--A-43; 50-A--A-53 and 61-A--A-63.", "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" }, { "database": "PubMed", "id": "18408734", "url": "https://glygen.org/publication/PubMed/18408734" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "40", "end_pos": "43" }, { "start_pos": "50", "end_pos": "53" }, { "start_pos": "61", "end_pos": "63" }, { "start_pos": "71", "end_pos": "74" }, { "start_pos": "8", "end_pos": "11" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "98", "end_pos": "98" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O88846-1.50.53", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O88846-1.61.63", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O88846-1.8.11", "start_pos": 8, "end_pos": 11, "uniprot_canonical_ac": "O88846-1", "length": 194, "uniprot_id": "RNF4_RAT", "protein_name": "E3 ubiquitin-protein ligase RNF4", "refseq_ac": "NP_062055", "refseq_name": "E3 ubiquitin-protein ligase RNF4", "gene_name": "Rnf4", "gene_names_uniprotkb": "Rnf4; Snurf", "gene_names_refseq": "Rnf4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "The RING finger protein SNURF is a bifunctional protein possessing DNA binding activity.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Hakli M, Karvonen U, Janne OA, Palvimo JJ", "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" } ], "reference": [ { "type": "PubMed", "id": "11319220", "url": "https://glygen.org/publication/PubMed/11319220" } ] } ], "crossref": [ { "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11319220", "url": "https://glygen.org/publication/PubMed/11319220", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "RKRR", "start_aa": "R", "up_seq": "MSTRNPQ", "down_seq": "GGAVNSRQTQKRTRETTSTP", "mutagenesis": [ { "sequence_org": "RKRR", "sequence_mut": "AAAA", "comment": "Altered DNA-binding activity.", "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" }, { "database": "PubMed", "id": "11319220", "url": "https://glygen.org/publication/PubMed/11319220" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "40", "end_pos": "43" }, { "start_pos": "50", "end_pos": "53" }, { "start_pos": "61", "end_pos": "63" }, { "start_pos": "71", "end_pos": "74" }, { "start_pos": "8", "end_pos": "11" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "98", "end_pos": "98" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O88846-1.98.98", "start_pos": 98, "end_pos": 98, "uniprot_canonical_ac": "O88846-1", "length": 194, "uniprot_id": "RNF4_RAT", "protein_name": "E3 ubiquitin-protein ligase RNF4", "refseq_ac": "NP_062055", "refseq_name": "E3 ubiquitin-protein ligase RNF4", "gene_name": "Rnf4", "gene_names_uniprotkb": "Rnf4; Snurf", "gene_names_refseq": "Rnf4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" }, { "database": "iPTMnet", "id": "O88846", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88846" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O88846", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88846", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRPRRNGRRLRQDHADSCVV", "down_seq": "SDDEELSKDKDVYVTTHTPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O88846", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88846" } ], "site_lbl": "Ser98" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "40", "end_pos": "43" }, { "start_pos": "50", "end_pos": "53" }, { "start_pos": "61", "end_pos": "63" }, { "start_pos": "71", "end_pos": "74" }, { "start_pos": "8", "end_pos": "11" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "98", "end_pos": "98" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O88846-1.99.99", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O88846-1.99.99", "start_pos": 99, "end_pos": 99, "uniprot_canonical_ac": "O88846-1", "length": 194, "uniprot_id": "RNF4_RAT", "protein_name": "E3 ubiquitin-protein ligase RNF4", "refseq_ac": "NP_062055", "refseq_name": "E3 ubiquitin-protein ligase RNF4", "gene_name": "Rnf4", "gene_names_uniprotkb": "Rnf4; Snurf", "gene_names_refseq": "Rnf4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" }, { "database": "iPTMnet", "id": "O88846", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88846" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O88846", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88846", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RPRRNGRRLRQDHADSCVVS", "down_seq": "DDEELSKDKDVYVTTHTPRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88846", "url": "https://www.uniprot.org/uniprotkb/O88846" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O88846", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88846" } ], "site_lbl": "Ser99" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "40", "end_pos": "43" }, { "start_pos": "50", "end_pos": "53" }, { "start_pos": "61", "end_pos": "63" }, { "start_pos": "71", "end_pos": "74" }, { "start_pos": "8", "end_pos": "11" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "98", "end_pos": "98" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O88846-1.98.98", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P22002-1.1417.1417", "start_pos": 1417, "end_pos": 1417, "uniprot_canonical_ac": "P22002-1", "length": 2169, "uniprot_id": "CAC1C_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1C", "refseq_ac": "NP_036649", "refseq_name": "voltage-dependent L-type calcium channel subunit alpha-1C", "gene_name": "Cacna1c", "gene_names_uniprotkb": "Cacna1c; Cach2; Cacn2; Cacnl1a1; Cchl1a1", "gene_names_refseq": "Cacna1c; RATIVS302", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VMLFFIYAVIGMQVFGKIAL", "down_seq": "DTTEINRNNNFQTFPQAVLL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1417", "evidence": [ { "id": "P22002", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P22002#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1417", "end_pos": "1417" }, { "start_pos": "1468", "end_pos": "1468" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "1983", "end_pos": "1983" }, { "start_pos": "1987", "end_pos": "1987" }, { "start_pos": "358", "end_pos": "358" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1699", "end_pos": "1699" }, { "start_pos": "1720", "end_pos": "1720" }, { "start_pos": "1927", "end_pos": "1927" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "845", "end_pos": "845" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P22002-1.1468.1468", "start_pos": 1468, "end_pos": 1468, "uniprot_canonical_ac": "P22002-1", "length": 2169, "uniprot_id": "CAC1C_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1C", "refseq_ac": "NP_036649", "refseq_name": "voltage-dependent L-type calcium channel subunit alpha-1C", "gene_name": "Cacna1c", "gene_names_uniprotkb": "Cacna1c; Cach2; Cacn2; Cacnl1a1; Cchl1a1", "gene_names_refseq": "Cacna1c; RATIVS302", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QDIMLACMPGKKCAPESEPS", "down_seq": "STEGETPCGSSFAVFYFISF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1468", "evidence": [ { "id": "P22002", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P22002#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1417", "end_pos": "1417" }, { "start_pos": "1468", "end_pos": "1468" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "1983", "end_pos": "1983" }, { "start_pos": "1987", "end_pos": "1987" }, { "start_pos": "358", "end_pos": "358" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1699", "end_pos": "1699" }, { "start_pos": "1720", "end_pos": "1720" }, { "start_pos": "1927", "end_pos": "1927" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "845", "end_pos": "845" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P22002-1.183.183", "start_pos": 183, "end_pos": 183, "uniprot_canonical_ac": "P22002-1", "length": 2169, "uniprot_id": "CAC1C_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1C", "refseq_ac": "NP_036649", "refseq_name": "voltage-dependent L-type calcium channel subunit alpha-1C", "gene_name": "Cacna1c", "gene_names_uniprotkb": "Cacna1c; Cach2; Cacn2; Cacnl1a1; Cchl1a1", "gene_names_refseq": "Cacna1c; RATIVS302", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TIFANCVALAIYIPFPEDDS", "down_seq": "ATNSNLERVEYLFLIIFTVE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn183", "evidence": [ { "id": "P22002", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P22002#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1417", "end_pos": "1417" }, { "start_pos": "1468", "end_pos": "1468" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "1983", "end_pos": "1983" }, { "start_pos": "1987", "end_pos": "1987" }, { "start_pos": "358", "end_pos": "358" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1699", "end_pos": "1699" }, { "start_pos": "1720", "end_pos": "1720" }, { "start_pos": "1927", "end_pos": "1927" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "845", "end_pos": "845" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P22002-1.1983.1983", "start_pos": 1983, "end_pos": 1983, "uniprot_canonical_ac": "P22002-1", "length": 2169, "uniprot_id": "CAC1C_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1C", "refseq_ac": "NP_036649", "refseq_name": "voltage-dependent L-type calcium channel subunit alpha-1C", "gene_name": "Cacna1c", "gene_names_uniprotkb": "Cacna1c; Cach2; Cacn2; Cacnl1a1; Cchl1a1", "gene_names_refseq": "Cacna1c; RATIVS302", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLSPLLQRSHSPSTFPRPRP", "down_seq": "PPVTPGSRGRPLQPIPTLRL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1983", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1417", "end_pos": "1417" }, { "start_pos": "1468", "end_pos": "1468" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "1983", "end_pos": "1983" }, { "start_pos": "1987", "end_pos": "1987" }, { "start_pos": "358", "end_pos": "358" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1699", "end_pos": "1699" }, { "start_pos": "1720", "end_pos": "1720" }, { "start_pos": "1927", "end_pos": "1927" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "845", "end_pos": "845" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P22002-1.1987.1987", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P22002-1.1987.1987", "start_pos": 1987, "end_pos": 1987, "uniprot_canonical_ac": "P22002-1", "length": 2169, "uniprot_id": "CAC1C_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1C", "refseq_ac": "NP_036649", "refseq_name": "voltage-dependent L-type calcium channel subunit alpha-1C", "gene_name": "Cacna1c", "gene_names_uniprotkb": "Cacna1c; Cach2; Cacn2; Cacnl1a1; Cchl1a1", "gene_names_refseq": "Cacna1c; RATIVS302", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LLQRSHSPSTFPRPRPTPPV", "down_seq": "PGSRGRPLQPIPTLRLEGAE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1987", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1417", "end_pos": "1417" }, { "start_pos": "1468", "end_pos": "1468" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "1983", "end_pos": "1983" }, { "start_pos": "1987", "end_pos": "1987" }, { "start_pos": "358", "end_pos": "358" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1699", "end_pos": "1699" }, { "start_pos": "1720", "end_pos": "1720" }, { "start_pos": "1927", "end_pos": "1927" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "845", "end_pos": "845" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P22002-1.1983.1983", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P22002-1.358.358", "start_pos": 358, "end_pos": 358, "uniprot_canonical_ac": "P22002-1", "length": 2169, "uniprot_id": "CAC1C_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1C", "refseq_ac": "NP_036649", "refseq_name": "voltage-dependent L-type calcium channel subunit alpha-1C", "gene_name": "Cacna1c", "gene_names_uniprotkb": "Cacna1c; Cach2; Cacn2; Cacnl1a1; Cchl1a1", "gene_names_refseq": "Cacna1c; RATIVS302", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A0A8I6ANR4", "url": "https://www.uniprot.org/uniprotkb/A0A8I6ANR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PIRSR602077-3", "url": "https://www.uniprot.org/unirule/PIRSR602077-3", "database": "PIR Site Rule", "categories": [ "Other" ] }, { "id": "A0ABK0LBJ7", "url": "https://www.uniprot.org/uniprotkb/A0ABK0LBJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABK0LXC5", "url": "https://www.uniprot.org/uniprotkb/A0ABK0LXC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8I6GKU9", "url": "https://www.uniprot.org/uniprotkb/A0A8I6GKU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PAEEDPSPCALETGHGRQCQ", "down_seq": "GTVCKPGWDGPKHGITNFDN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn358", "evidence": [ { "id": "A0A8I6ANR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8I6ANR4#ptm_processing" }, { "id": "PIRSR602077-3", "database": "PIR Site Rule", "url": "https://www.uniprot.org/unirule/PIRSR602077-3" }, { "id": "A0ABK0LBJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0ABK0LBJ7#ptm_processing" }, { "id": "A0ABK0LXC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0ABK0LXC5#ptm_processing" }, { "id": "A0A8I6GKU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8I6GKU9#ptm_processing" }, { "id": "P22002", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P22002#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1417", "end_pos": "1417" }, { "start_pos": "1468", "end_pos": "1468" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "1983", "end_pos": "1983" }, { "start_pos": "1987", "end_pos": "1987" }, { "start_pos": "358", "end_pos": "358" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1699", "end_pos": "1699" }, { "start_pos": "1720", "end_pos": "1720" }, { "start_pos": "1927", "end_pos": "1927" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "845", "end_pos": "845" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P22002-1.1699.1699", "start_pos": 1699, "end_pos": 1699, "uniprot_canonical_ac": "P22002-1", "length": 2169, "uniprot_id": "CAC1C_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1C", "refseq_ac": "NP_036649", "refseq_name": "voltage-dependent L-type calcium channel subunit alpha-1C", "gene_name": "Cacna1c", "gene_names_uniprotkb": "Cacna1c; Cach2; Cacn2; Cacnl1a1; Cchl1a1", "gene_names_refseq": "Cacna1c; RATIVS302", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" }, { "database": "iPTMnet", "id": "P22002", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P22002" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P22002", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P22002", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLQAGLRTLHDIGPEIRRAI", "down_seq": "GDLTAEEELDKAMKEAVSAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P22002", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P22002" } ], "site_lbl": "Ser1699" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1417", "end_pos": "1417" }, { "start_pos": "1468", "end_pos": "1468" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "1983", "end_pos": "1983" }, { "start_pos": "1987", "end_pos": "1987" }, { "start_pos": "358", "end_pos": "358" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1699", "end_pos": "1699" }, { "start_pos": "1720", "end_pos": "1720" }, { "start_pos": "1927", "end_pos": "1927" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "845", "end_pos": "845" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P22002-1.1720.1720", "start_pos": 1720, "end_pos": 1720, "uniprot_canonical_ac": "P22002-1", "length": 2169, "uniprot_id": "CAC1C_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1C", "refseq_ac": "NP_036649", "refseq_name": "voltage-dependent L-type calcium channel subunit alpha-1C", "gene_name": "Cacna1c", "gene_names_uniprotkb": "Cacna1c; Cach2; Cacn2; Cacnl1a1; Cchl1a1", "gene_names_refseq": "Cacna1c; RATIVS302", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" }, { "database": "iPTMnet", "id": "P22002", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P22002" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P22002", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P22002", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GDLTAEEELDKAMKEAVSAA", "down_seq": "EDDIFRRAGGLFGNHVSYYQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P22002", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P22002" } ], "site_lbl": "Ser1720" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1417", "end_pos": "1417" }, { "start_pos": "1468", "end_pos": "1468" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "1983", "end_pos": "1983" }, { "start_pos": "1987", "end_pos": "1987" }, { "start_pos": "358", "end_pos": "358" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1699", "end_pos": "1699" }, { "start_pos": "1720", "end_pos": "1720" }, { "start_pos": "1927", "end_pos": "1927" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "845", "end_pos": "845" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P22002-1.1927.1927", "start_pos": 1927, "end_pos": 1927, "uniprot_canonical_ac": "P22002-1", "length": 2169, "uniprot_id": "CAC1C_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1C", "refseq_ac": "NP_036649", "refseq_name": "voltage-dependent L-type calcium channel subunit alpha-1C", "gene_name": "Cacna1c", "gene_names_uniprotkb": "Cacna1c; Cach2; Cacn2; Cacnl1a1; Cchl1a1", "gene_names_refseq": "Cacna1c; RATIVS302", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EIQPCPKRSFLRSASLGRRA", "down_seq": "FHLECLKRQKDQGGDISQKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA", "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "site_lbl": "Ser1927" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1417", "end_pos": "1417" }, { "start_pos": "1468", "end_pos": "1468" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "1983", "end_pos": "1983" }, { "start_pos": "1987", "end_pos": "1987" }, { "start_pos": "358", "end_pos": "358" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1699", "end_pos": "1699" }, { "start_pos": "1720", "end_pos": "1720" }, { "start_pos": "1927", "end_pos": "1927" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "845", "end_pos": "845" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P22002-1.499.499", "start_pos": 499, "end_pos": 499, "uniprot_canonical_ac": "P22002-1", "length": 2169, "uniprot_id": "CAC1C_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1C", "refseq_ac": "NP_036649", "refseq_name": "voltage-dependent L-type calcium channel subunit alpha-1C", "gene_name": "Cacna1c", "gene_names_uniprotkb": "Cacna1c; Cach2; Cacn2; Cacnl1a1; Cchl1a1", "gene_names_refseq": "Cacna1c; RATIVS302", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PENEDEGMDEDKPRNMSMPT", "down_seq": "ETESVNTENVAGGDIEGENC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "site_lbl": "Ser499" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1417", "end_pos": "1417" }, { "start_pos": "1468", "end_pos": "1468" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "1983", "end_pos": "1983" }, { "start_pos": "1987", "end_pos": "1987" }, { "start_pos": "358", "end_pos": "358" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1699", "end_pos": "1699" }, { "start_pos": "1720", "end_pos": "1720" }, { "start_pos": "1927", "end_pos": "1927" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "845", "end_pos": "845" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P22002-1.506.506", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P22002-1.506.506", "start_pos": 506, "end_pos": 506, "uniprot_canonical_ac": "P22002-1", "length": 2169, "uniprot_id": "CAC1C_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1C", "refseq_ac": "NP_036649", "refseq_name": "voltage-dependent L-type calcium channel subunit alpha-1C", "gene_name": "Cacna1c", "gene_names_uniprotkb": "Cacna1c; Cach2; Cacn2; Cacnl1a1; Cchl1a1", "gene_names_refseq": "Cacna1c; RATIVS302", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MDEDKPRNMSMPTSETESVN", "down_seq": "ENVAGGDIEGENCGARLAHR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "site_lbl": "Thr506" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1417", "end_pos": "1417" }, { "start_pos": "1468", "end_pos": "1468" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "1983", "end_pos": "1983" }, { "start_pos": "1987", "end_pos": "1987" }, { "start_pos": "358", "end_pos": "358" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1699", "end_pos": "1699" }, { "start_pos": "1720", "end_pos": "1720" }, { "start_pos": "1927", "end_pos": "1927" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "845", "end_pos": "845" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P22002-1.499.499", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P22002-1.838.838", "start_pos": 838, "end_pos": 838, "uniprot_canonical_ac": "P22002-1", "length": 2169, "uniprot_id": "CAC1C_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1C", "refseq_ac": "NP_036649", "refseq_name": "voltage-dependent L-type calcium channel subunit alpha-1C", "gene_name": "Cacna1c", "gene_names_uniprotkb": "Cacna1c; Cach2; Cacn2; Cacnl1a1; Cchl1a1", "gene_names_refseq": "Cacna1c; RATIVS302", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QEVMEKPAVEESKEEKIELK", "down_seq": "ITADGESPPTTKINMDDLQP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "site_lbl": "Ser838" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1417", "end_pos": "1417" }, { "start_pos": "1468", "end_pos": "1468" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "1983", "end_pos": "1983" }, { "start_pos": "1987", "end_pos": "1987" }, { "start_pos": "358", "end_pos": "358" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1699", "end_pos": "1699" }, { "start_pos": "1720", "end_pos": "1720" }, { "start_pos": "1927", "end_pos": "1927" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "845", "end_pos": "845" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P22002-1.845.845", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P22002-1.845.845", "start_pos": 845, "end_pos": 845, "uniprot_canonical_ac": "P22002-1", "length": 2169, "uniprot_id": "CAC1C_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha-1C", "refseq_ac": "NP_036649", "refseq_name": "voltage-dependent L-type calcium channel subunit alpha-1C", "gene_name": "Cacna1c", "gene_names_uniprotkb": "Cacna1c; Cach2; Cacn2; Cacnl1a1; Cchl1a1", "gene_names_refseq": "Cacna1c; RATIVS302", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" }, { "database": "iPTMnet", "id": "P22002", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P22002" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P22002", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P22002", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AVEESKEEKIELKSITADGE", "down_seq": "PPTTKINMDDLQPSENEDKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P22002", "url": "https://www.uniprot.org/uniprotkb/P22002" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P22002", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P22002" } ], "site_lbl": "Ser845" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1417", "end_pos": "1417" }, { "start_pos": "1468", "end_pos": "1468" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "1983", "end_pos": "1983" }, { "start_pos": "1987", "end_pos": "1987" }, { "start_pos": "358", "end_pos": "358" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1699", "end_pos": "1699" }, { "start_pos": "1720", "end_pos": "1720" }, { "start_pos": "1927", "end_pos": "1927" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "845", "end_pos": "845" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P22002-1.838.838", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P84092-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P84092-1", "length": 435, "uniprot_id": "AP2M1_RAT", "protein_name": "AP-2 complex subunit mu", "refseq_ac": "NP_446289", "refseq_name": "AP-2 complex subunit mu", "gene_name": "Ap2m1", "gene_names_uniprotkb": "Ap2m1", "gene_names_refseq": "Ap2m1; Ap50; Clapm1; mu2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P84092", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P84092" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P84092", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P84092", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P84092", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P84092" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "156", "end_pos": "156" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "421", "end_pos": "421" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "156", "end_pos": "156" }, { "start_pos": "45", "end_pos": "45" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P84092-1.156.156", "start_pos": 156, "end_pos": 156, "uniprot_canonical_ac": "P84092-1", "length": 435, "uniprot_id": "AP2M1_RAT", "protein_name": "AP-2 complex subunit mu", "refseq_ac": "NP_446289", "refseq_name": "AP-2 complex subunit mu", "gene_name": "Ap2m1", "gene_names_uniprotkb": "Ap2m1", "gene_names_refseq": "Ap2m1; Ap50; Clapm1; mu2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Phosphorylation of threonine 156 of the mu2 subunit of the AP2 complex is essential for endocytosis in vitro and in vivo.", "journal": "Current biology : CB", "date": "2001", "authors": "Olusanya O, Andrews PD, Swedlow JR, Smythe E", "evidence": [ { "database": "UniProtKB", "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092" } ], "reference": [ { "type": "PubMed", "id": "11516654", "url": "https://glygen.org/publication/PubMed/11516654" } ] } ], "crossref": [ { "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11516654", "url": "https://glygen.org/publication/PubMed/11516654", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QGIKSQHQTKEEQSQITSQV", "down_seq": "GQIGWRREGIKYRRNELFLD", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Inhibits endocytosis by AP-2; no effect on membrane association of AP-2.", "evidence": [ { "database": "UniProtKB", "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092" }, { "database": "PubMed", "id": "11516654", "url": "https://glygen.org/publication/PubMed/11516654" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092" } ], "site_lbl": "Thr156" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "156", "end_pos": "156" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "421", "end_pos": "421" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "156", "end_pos": "156" }, { "start_pos": "45", "end_pos": "45" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "P84092-1.176.176", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P84092-1.176.176", "start_pos": 176, "end_pos": 176, "uniprot_canonical_ac": "P84092-1", "length": 435, "uniprot_id": "AP2M1_RAT", "protein_name": "AP-2 complex subunit mu", "refseq_ac": "NP_446289", "refseq_name": "AP-2 complex subunit mu", "gene_name": "Ap2m1", "gene_names_uniprotkb": "Ap2m1", "gene_names_refseq": "Ap2m1; Ap50; Clapm1; mu2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Inhibition of the receptor-binding function of clathrin adaptor protein AP-2 by dominant-negative mutant mu2 subunit and its effects on endocytosis.", "journal": "The EMBO journal", "date": "1999", "authors": "Nesterov A, Carter RE, Sorkina T, Gill GN, Sorkin A", "evidence": [ { "database": "UniProtKB", "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092" } ], "reference": [ { "type": "PubMed", "id": "10228163", "url": "https://glygen.org/publication/PubMed/10228163" } ] } ], "crossref": [ { "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10228163", "url": "https://glygen.org/publication/PubMed/10228163", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "TGQIGWRREGIKYRRNELFL", "down_seq": "VLESVNLLMSPQGQVLSAHV", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Abolishes interaction with TTGN1 and EGFR.", "evidence": [ { "database": "UniProtKB", "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092" }, { "database": "PubMed", "id": "10228163", "url": "https://glygen.org/publication/PubMed/10228163" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "156", "end_pos": "156" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "421", "end_pos": "421" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "156", "end_pos": "156" }, { "start_pos": "45", "end_pos": "45" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P84092-1.156.156", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P84092-1.421.421", "start_pos": 421, "end_pos": 421, "uniprot_canonical_ac": "P84092-1", "length": 435, "uniprot_id": "AP2M1_RAT", "protein_name": "AP-2 complex subunit mu", "refseq_ac": "NP_446289", "refseq_name": "AP-2 complex subunit mu", "gene_name": "Ap2m1", "gene_names_uniprotkb": "Ap2m1", "gene_names_refseq": "Ap2m1; Ap50; Clapm1; mu2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Inhibition of the receptor-binding function of clathrin adaptor protein AP-2 by dominant-negative mutant mu2 subunit and its effects on endocytosis.", "journal": "The EMBO journal", "date": "1999", "authors": "Nesterov A, Carter RE, Sorkina T, Gill GN, Sorkin A", "evidence": [ { "database": "UniProtKB", "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092" } ], "reference": [ { "type": "PubMed", "id": "10228163", "url": "https://glygen.org/publication/PubMed/10228163" } ] } ], "crossref": [ { "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10228163", "url": "https://glygen.org/publication/PubMed/10228163", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "W", "start_aa": "W", "up_seq": "VRYLKVFEPKLNYSDHDVIK", "down_seq": "VRYIGRSGIYETRC", "mutagenesis": [ { "sequence_org": "W", "sequence_mut": "A", "comment": "Abolishes interaction with TTGN1 and EGFR.", "evidence": [ { "database": "UniProtKB", "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092" }, { "database": "PubMed", "id": "10228163", "url": "https://glygen.org/publication/PubMed/10228163" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "156", "end_pos": "156" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "421", "end_pos": "421" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "156", "end_pos": "156" }, { "start_pos": "45", "end_pos": "45" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P84092-1.45.45", "start_pos": 45, "end_pos": 45, "uniprot_canonical_ac": "P84092-1", "length": 435, "uniprot_id": "AP2M1_RAT", "protein_name": "AP-2 complex subunit mu", "refseq_ac": "NP_446289", "refseq_name": "AP-2 complex subunit mu", "gene_name": "Ap2m1", "gene_names_uniprotkb": "Ap2m1", "gene_names_refseq": "Ap2m1; Ap50; Clapm1; mu2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRNAVDAFRVNVIHARQQVR", "down_seq": "PVTNIARTSFFHVKRSNIWL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P84092", "url": "https://www.uniprot.org/uniprotkb/P84092" } ], "site_lbl": "Ser45" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "156", "end_pos": "156" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "421", "end_pos": "421" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "156", "end_pos": "156" }, { "start_pos": "45", "end_pos": "45" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D3ZAF6-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "D3ZAF6-1", "length": 88, "uniprot_id": "ATPK_RAT", "protein_name": "ATP synthase F(0) complex subunit f, mitochondrial", "refseq_ac": "NP_001258046", "refseq_name": "ATP synthase F(0) complex subunit f, mitochondrial", "gene_name": "Atp5mf; Zfp394", "gene_names_uniprotkb": "Atp5mf; Zfp394; Atp5j2; Atp5mf", "gene_names_refseq": "Atp5j2; Atp5mf", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZAF6", "url": "https://www.uniprot.org/uniprotkb/D3ZAF6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "D3ZAF6", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=D3ZAF6" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZAF6", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=D3ZAF6", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "D3ZAF6", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=D3ZAF6" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "D3ZAF6-1.3.3", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZAF6-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "D3ZAF6-1", "length": 88, "uniprot_id": "ATPK_RAT", "protein_name": "ATP synthase F(0) complex subunit f, mitochondrial", "refseq_ac": "NP_001258046", "refseq_name": "ATP synthase F(0) complex subunit f, mitochondrial", "gene_name": "Atp5mf; Zfp394", "gene_names_uniprotkb": "Atp5mf; Zfp394; Atp5j2; Atp5mf", "gene_names_refseq": "Atp5j2; Atp5mf", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZAF6", "url": "https://www.uniprot.org/uniprotkb/D3ZAF6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZAF6", "url": "https://www.uniprot.org/uniprotkb/D3ZAF6" }, { "database": "iPTMnet", "id": "D3ZAF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZAF6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZAF6", "url": "https://www.uniprot.org/uniprotkb/D3ZAF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZAF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZAF6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MA", "down_seq": "IVPLKEKKLMEVKLRELPSW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZAF6", "url": "https://www.uniprot.org/uniprotkb/D3ZAF6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZAF6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZAF6" } ], "site_lbl": "Ser3" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "D3ZAF6-1.0.0", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.166.166", "start_pos": 166, "end_pos": 166, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLGRVVDALGNAIDGKGPVG", "down_seq": "KIRRRVGLKAPGIIPRISVR", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser166", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "site_lbl": "Ser166" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "P15999-1.184.184", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.184.184", "start_pos": 184, "end_pos": 184, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VGSKIRRRVGLKAPGIIPRI", "down_seq": "VREPMQTGIKAVDSLVPIGR", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser184", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "site_lbl": "Ser184" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P15999-1.166.166", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P15999-1.198.198", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.198.198", "start_pos": 198, "end_pos": 198, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GIIPRISVREPMQTGIKAVD", "down_seq": "LVPIGRGQRELIIGDRQTGK", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser198", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P15999-1.184.184", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.219.219", "start_pos": 219, "end_pos": 219, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LVPIGRGQRELIIGDRQTGK", "down_seq": "SIAIDTIINQKRFNDGTDEK", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr219", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P15999-1.220.220", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VPIGRGQRELIIGDRQTGKT", "down_seq": "IAIDTIINQKRFNDGTDEKK", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser220", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P15999-1.219.219", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.254.254", "start_pos": 254, "end_pos": 254, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] } ], "crossref": [ { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGTDEKKKLYCIYVAIGQKR", "down_seq": "TVAQLVKRLTDADAMKYTIV", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser254", "evidence": [ { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P15999-1.255.255", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.255.255", "start_pos": 255, "end_pos": 255, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] } ], "crossref": [ { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GTDEKKKLYCIYVAIGQKRS", "down_seq": "VAQLVKRLTDADAMKYTIVV", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr255", "evidence": [ { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P15999-1.254.254", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.315.315", "start_pos": 315, "end_pos": 315, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SMGEYFRDNGKHALIIYDDL", "down_seq": "KQAVAYRQMSLLLRRPPGRE", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser315", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "P15999-1.325.325", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.325.325", "start_pos": 325, "end_pos": 325, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KHALIIYDDLSKQAVAYRQM", "down_seq": "LLLRRPPGREAYPGDVFYLH", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser325", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P15999-1.315.315", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.346.346", "start_pos": 346, "end_pos": 346, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLLRRPPGREAYPGDVFYLH", "down_seq": "RLLERAAKMNDSFGGGSLTA", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser346", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ML", "down_seq": "VRIAAAVARALPRRAGLVSK", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser3", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P15999-1.0.0", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.413.413", "start_pos": 413, "end_pos": 413, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IFLETELFYKGIRPAINVGL", "down_seq": "VSRVGSAAQTRAMKQVAGTM", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser413", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.451.451", "start_pos": 451, "end_pos": 451, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GTMKLELAQYREVAAFAQFG", "down_seq": "DLDAATQQLLSRGVRLTELL", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser451", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.502.502", "start_pos": 502, "end_pos": 502, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEQVAVIYAGVRGYLDKLEP", "down_seq": "KITKFESAFLSHVVSQHQSL", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser502", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "P15999-1.513.513", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P15999-1.517.517", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.513.513", "start_pos": 513, "end_pos": 513, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGYLDKLEPSKITKFESAFL", "down_seq": "HVVSQHQSLLGNIRSDGKIS", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser513", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P15999-1.502.502", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P15999-1.517.517", "categories": [ "glycosylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P15999-1.533.533", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.517.517", "start_pos": 517, "end_pos": 517, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DKLEPSKITKFESAFLSHVV", "down_seq": "QHQSLLGNIRSDGKISEQSD", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser517", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P15999-1.502.502", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P15999-1.513.513", "categories": [ "glycosylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P15999-1.533.533", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GTRNLHASNTRLQKTGTAEM", "down_seq": "SILEERILGADTSVDLEETG", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser52", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P15999-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P15999-1.64.64", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P15999-1.65.65", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.533.533", "start_pos": 533, "end_pos": 533, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SHVVSQHQSLLGNIRSDGKI", "down_seq": "EQSDAKLKEIVTNFLAGFEP", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser533", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P15999-1.513.513", "categories": [ "glycosylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P15999-1.517.517", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QKTGTAEMSSILEERILGAD", "down_seq": "SVDLEETGRVLSIGDGIARV", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr64", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P15999-1.52.52", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P15999-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P15999-1.65.65", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P15999-1.76.76", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KTGTAEMSSILEERILGADT", "down_seq": "VDLEETGRVLSIGDGIARVH", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser65", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "site_lbl": "Ser65" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P15999-1.52.52", "categories": [ "glycosylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P15999-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P15999-1.64.64", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P15999-1.76.76", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.76.76", "start_pos": 76, "end_pos": 76, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "journal": "Journal of proteome research", "date": "2016", "authors": "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "Discovery and confirmation of O-GlcNAcylated proteins in rat liver mitochondria by combination of mass spectrometry and immunological methods.", "journal": "PloS one", "date": "2013", "authors": "Cao W, Cao J, Huang J, Yao J, Yan G, Xu H, Yang P", "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999#ptm_processing" }, { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" }, { "database": "O-GlcNAc Atlas", "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999" } ], "reference": [ { "type": "PubMed", "id": "24098488", "url": "https://glygen.org/publication/PubMed/24098488" } ] } ], "crossref": [ { "id": "27213235", "url": "https://glygen.org/publication/PubMed/27213235", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26446791", "url": "https://glygen.org/publication/PubMed/26446791", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24098488", "url": "https://glygen.org/publication/PubMed/24098488", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://oglcnac.org/atlas/detail/P15999", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EERILGADTSVDLEETGRVL", "down_seq": "IGDGIARVHGLRNVQAEEMV", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser76", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27213235" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "26446791", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26446791" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "24098488", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24098488" }, { "id": "P15999", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P15999" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GlcNAc) serine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser76", "evidence": [ { "id": "P15999", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15999#ptm_processing" }, { "id": "24098488", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24098488" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; alternate", "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "site_lbl": "Ser76" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P15999-1.64.64", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P15999-1.65.65", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "An O-GlcNAcylomic Approach Reveals ACLY as a Potential Target in Sepsis in the Young Rat.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ], "reference": [ { "type": "PubMed", "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162" } ] } ], "crossref": [ { "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "34502162", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34502162" }, { "id": "P15999", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15999" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P15999-1.3.3", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.106.106", "start_pos": 106, "end_pos": 106, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLRNVQAEEMVEFSSGLKGM", "down_seq": "LNLEPDNVGVVVFGNDKLIK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "site_lbl": "Ser106" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15999-1.134.134", "start_pos": 134, "end_pos": 134, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" }, { "database": "iPTMnet", "id": "P15999", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15999" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15999", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15999", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VGVVVFGNDKLIKEGDIVKR", "down_seq": "GAIVDVPVGDELLGRVVDAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P15999", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15999" } ], "site_lbl": "Thr134" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15999-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "P15999-1", "length": 553, "uniprot_id": "ATPA_RAT", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "refseq_ac": "NP_075581", "refseq_name": "ATP synthase F(1) complex subunit alpha, mitochondrial precursor", "gene_name": "Atp5f1a", "gene_names_uniprotkb": "Atp5f1a; Atp5a1", "gene_names_refseq": "Atp5a1; Atp5f1a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TRNLHASNTRLQKTGTAEMS", "down_seq": "ILEERILGADTSVDLEETGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15999", "url": "https://www.uniprot.org/uniprotkb/P15999" } ], "site_lbl": "Ser53" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "198", "end_pos": "198" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "254", "end_pos": "254" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "451", "end_pos": "451" }, { "start_pos": "502", "end_pos": "502" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "517", "end_pos": "517" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P15999-1.52.52", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P15999-1.64.64", "categories": [ "glycosylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P15999-1.65.65", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P09626-1.791.791", "start_pos": 791, "end_pos": 791, "uniprot_canonical_ac": "P09626-1", "length": 1033, "uniprot_id": "ATP4A_RAT", "protein_name": "Potassium-transporting ATPase alpha chain 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Atp4a", "gene_names_uniprotkb": "Atp4a; Hka", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Deceleration of the E1P-E2P transition and ion transport by mutation of potentially salt bridge-forming residues Lys-791 and Glu-820 in gastric H+/K+-ATPase.", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "Durr KL, Seuffert I, Friedrich T", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "reference": [ { "type": "PubMed", "id": "20921224", "url": "https://glygen.org/publication/PubMed/20921224" } ] } ], "crossref": [ { "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20921224", "url": "https://glygen.org/publication/PubMed/20921224", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "VEQGRLIFDNLKKSIAYTLT", "down_seq": "NIPELTPYLIYITVSVPLPL", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Impaired transport activity.", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" }, { "database": "PubMed", "id": "20921224", "url": "https://glygen.org/publication/PubMed/20921224" } ] }, { "sequence_org": "K", "sequence_mut": "E", "comment": "Impaired transport activity.", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" }, { "database": "PubMed", "id": "20921224", "url": "https://glygen.org/publication/PubMed/20921224" } ] }, { "sequence_org": "K", "sequence_mut": "R", "comment": "Impaired transport activity.", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" }, { "database": "PubMed", "id": "20921224", "url": "https://glygen.org/publication/PubMed/20921224" } ] }, { "sequence_org": "K", "sequence_mut": "S", "comment": "Impaired transport activity.", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" }, { "database": "PubMed", "id": "20921224", "url": "https://glygen.org/publication/PubMed/20921224" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "791", "end_pos": "791" }, { "start_pos": "820", "end_pos": "820" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "952", "end_pos": "952" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09626-1.820.820", "start_pos": 820, "end_pos": 820, "uniprot_canonical_ac": "P09626-1", "length": 1033, "uniprot_id": "ATP4A_RAT", "protein_name": "Potassium-transporting ATPase alpha chain 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Atp4a", "gene_names_uniprotkb": "Atp4a; Hka", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Deceleration of the E1P-E2P transition and ion transport by mutation of potentially salt bridge-forming residues Lys-791 and Glu-820 in gastric H+/K+-ATPase.", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "Durr KL, Seuffert I, Friedrich T", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "reference": [ { "type": "PubMed", "id": "20921224", "url": "https://glygen.org/publication/PubMed/20921224" } ] } ], "crossref": [ { "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20921224", "url": "https://glygen.org/publication/PubMed/20921224", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "LIYITVSVPLPLGCITILFI", "down_seq": "LCTDIFPSVSLAYEKAESDI", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Impaired transport activity.", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" }, { "database": "PubMed", "id": "20921224", "url": "https://glygen.org/publication/PubMed/20921224" } ] }, { "sequence_org": "E", "sequence_mut": "D", "comment": "Impaired transport activity.", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" }, { "database": "PubMed", "id": "20921224", "url": "https://glygen.org/publication/PubMed/20921224" } ] }, { "sequence_org": "E", "sequence_mut": "Q", "comment": "Impaired transport activity.", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" }, { "database": "PubMed", "id": "20921224", "url": "https://glygen.org/publication/PubMed/20921224" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "791", "end_pos": "791" }, { "start_pos": "820", "end_pos": "820" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "952", "end_pos": "952" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "P09626-1.838.838", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09626-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "P09626-1", "length": 1033, "uniprot_id": "ATP4A_RAT", "protein_name": "Potassium-transporting ATPase alpha chain 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Atp4a", "gene_names_uniprotkb": "Atp4a; Hka", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YELYSVELGTGPGGDMAAKM", "down_seq": "KKKAGGGGGKKKEKLENMKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "site_lbl": "Ser26" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "791", "end_pos": "791" }, { "start_pos": "820", "end_pos": "820" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "952", "end_pos": "952" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P09626-1.6.6", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P09626-1.9.9", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P09626-1.461.461", "start_pos": 461, "end_pos": 461, "uniprot_canonical_ac": "P09626-1", "length": 1033, "uniprot_id": "ATP4A_RAT", "protein_name": "Potassium-transporting ATPase alpha chain 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Atp4a", "gene_names_uniprotkb": "Atp4a; Hka", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AFKSGQDAVPVPKRIVIGDA", "down_seq": "ETALLKFSELTLGNAMGYRD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "site_lbl": "Ser461" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "791", "end_pos": "791" }, { "start_pos": "820", "end_pos": "820" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "952", "end_pos": "952" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P09626-1.599.599", "start_pos": 599, "end_pos": 599, "uniprot_canonical_ac": "P09626-1", "length": 1033, "uniprot_id": "ATP4A_RAT", "protein_name": "Potassium-transporting ATPase alpha chain 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Atp4a", "gene_names_uniprotkb": "Atp4a; Hka", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TFDVEAMNFPSSGLCFAGLV", "down_seq": "MIDPPRATVPDAVLKCRTAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "site_lbl": "Ser599" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "791", "end_pos": "791" }, { "start_pos": "820", "end_pos": "820" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "952", "end_pos": "952" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P09626-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "P09626-1", "length": 1033, "uniprot_id": "ATP4A_RAT", "protein_name": "Potassium-transporting ATPase alpha chain 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Atp4a", "gene_names_uniprotkb": "Atp4a; Hka", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MGKEN", "down_seq": "ELYSVELGTGPGGDMAAKMS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "site_lbl": "Tyr6" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "791", "end_pos": "791" }, { "start_pos": "820", "end_pos": "820" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "952", "end_pos": "952" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P09626-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P09626-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P09626-1.838.838", "start_pos": 838, "end_pos": 838, "uniprot_canonical_ac": "P09626-1", "length": 1033, "uniprot_id": "ATP4A_RAT", "protein_name": "Potassium-transporting ATPase alpha chain 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Atp4a", "gene_names_uniprotkb": "Atp4a; Hka", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" }, { "database": "iPTMnet", "id": "P09626", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09626" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09626", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09626", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FIELCTDIFPSVSLAYEKAE", "down_seq": "DIMHLRPRNPRRDRLVNEPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P09626", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09626" } ], "site_lbl": "Ser838" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "791", "end_pos": "791" }, { "start_pos": "820", "end_pos": "820" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "952", "end_pos": "952" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P09626-1.820.820", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09626-1.952.952", "start_pos": 952, "end_pos": 952, "uniprot_canonical_ac": "P09626-1", "length": 1033, "uniprot_id": "ATP4A_RAT", "protein_name": "Potassium-transporting ATPase alpha chain 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Atp4a", "gene_names_uniprotkb": "Atp4a; Hka", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FISIEMCQIADVLIRKTRRL", "down_seq": "AFQQGFFRNRILVIAIVFQV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "site_lbl": "Ser952" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "791", "end_pos": "791" }, { "start_pos": "820", "end_pos": "820" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "952", "end_pos": "952" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P09626-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "P09626-1", "length": 1033, "uniprot_id": "ATP4A_RAT", "protein_name": "Potassium-transporting ATPase alpha chain 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Atp4a", "gene_names_uniprotkb": "Atp4a; Hka", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MGKENYEL", "down_seq": "SVELGTGPGGDMAAKMSKKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P09626", "url": "https://www.uniprot.org/uniprotkb/P09626" } ], "site_lbl": "Tyr9" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "791", "end_pos": "791" }, { "start_pos": "820", "end_pos": "820" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "26", "end_pos": "26" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "599", "end_pos": "599" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "952", "end_pos": "952" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P09626-1.6.6", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P09626-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P07174-1.61.61", "start_pos": 61, "end_pos": 61, "uniprot_canonical_ac": "P07174-1", "length": 425, "uniprot_id": "TNR16_RAT", "protein_name": "Tumor necrosis factor receptor superfamily member 16", "refseq_ac": "NP_036742", "refseq_name": "tumor necrosis factor receptor superfamily member 16 precursor", "gene_name": "Ngfr", "gene_names_uniprotkb": "Ngfr; Tnfrsf16", "gene_names_refseq": "LNGFR; Ngfr; RNNGFRR; Tnfrsf16; p75NTR; p75", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Molecular and structural insight into proNGF engagement of p75NTR and sortilin.", "journal": "Journal of molecular biology", "date": "2010", "authors": "Feng D, Kim T, Ozkan E, Light M, Torkin R, Teng KK, Hempstead BL, Garcia KC", "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174#ptm_processing" }, { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" } ], "reference": [ { "type": "PubMed", "id": "20036257", "url": "https://glygen.org/publication/PubMed/20036257" } ] } ], "crossref": [ { "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20036257", "url": "https://glygen.org/publication/PubMed/20036257", "database": "PubMed", "categories": [ "Other" ] }, { "id": "3BUK", "url": "https://www.rcsb.org/structure/3BUK", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3BUK|D|32", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "3BUK|C|32", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SGECCKACNLGEGVAQPCGA", "down_seq": "QTVCEPCLDNVTFSDVVSAT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3BUK&bu=0&command=select+.D:32;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn61", "evidence": [ { "id": "P07174", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07174#ptm_processing" }, { "id": "20036257", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20036257" }, { "id": "3BUK", "database": "PDB", "url": "https://www.rcsb.org/sequence/3BUK" } ] } ], "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "D", "comment": "Loss of a glycosylation site.", "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" }, { "database": "PubMed", "id": "20036257", "url": "https://glygen.org/publication/PubMed/20036257" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "61", "end_pos": "61" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "61", "end_pos": "61" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "366", "end_pos": "366" } ] } ], "categories": [ "glycosylation_flag", "mutagenesis_flag" ], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "P07174-1.71.71", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P07174-1.71.71", "start_pos": 71, "end_pos": 71, "uniprot_canonical_ac": "P07174-1", "length": 425, "uniprot_id": "TNR16_RAT", "protein_name": "Tumor necrosis factor receptor superfamily member 16", "refseq_ac": "NP_036742", "refseq_name": "tumor necrosis factor receptor superfamily member 16 precursor", "gene_name": "Ngfr", "gene_names_uniprotkb": "Ngfr; Tnfrsf16", "gene_names_refseq": "LNGFR; Ngfr; RNNGFRR; Tnfrsf16; p75NTR; p75", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GEGVAQPCGANQTVCEPCLD", "down_seq": "VTFSDVVSATEPCKPCTECL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn71", "evidence": [ { "id": "P07174", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07174#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "61", "end_pos": "61" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "61", "end_pos": "61" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "366", "end_pos": "366" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P07174-1.61.61", "categories": [ "glycosylation_flag", "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P07174-1.257.257", "start_pos": 257, "end_pos": 257, "uniprot_canonical_ac": "P07174-1", "length": 425, "uniprot_id": "TNR16_RAT", "protein_name": "Tumor necrosis factor receptor superfamily member 16", "refseq_ac": "NP_036742", "refseq_name": "tumor necrosis factor receptor superfamily member 16 precursor", "gene_name": "Ngfr", "gene_names_uniprotkb": "Ngfr; Tnfrsf16", "gene_names_refseq": "LNGFR; Ngfr; RNNGFRR; Tnfrsf16; p75NTR; p75", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Structural Basis of p75 Transmembrane Domain Dimerization.", "journal": "The Journal of biological chemistry", "date": "2016", "authors": "Nadezhdin KD, Garcia-Carpio I, Goncharuk SA, Mineev KS, Arseniev AS, Vilar M", "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" } ], "reference": [ { "type": "PubMed", "id": "27056327", "url": "https://glygen.org/publication/PubMed/27056327" } ] } ], "crossref": [ { "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27056327", "url": "https://glygen.org/publication/PubMed/27056327", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "MGSSQPVVTRGTTDNLIPVY", "down_seq": "SILAAVVVGLVAYIAFKRWN", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Alters mode of dimerization, but does not abolish dimerization.", "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" }, { "database": "PubMed", "id": "27056327", "url": "https://glygen.org/publication/PubMed/27056327" } ] }, { "sequence_org": "C", "sequence_mut": "I", "comment": "No effect on dimerization. Loss of dimerization; when associated with I-266.", "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" }, { "database": "PubMed", "id": "27056327", "url": "https://glygen.org/publication/PubMed/27056327" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "61", "end_pos": "61" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "61", "end_pos": "61" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "366", "end_pos": "366" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P07174-1.262.262", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P07174-1.266.266", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P07174-1.262.262", "start_pos": 262, "end_pos": 262, "uniprot_canonical_ac": "P07174-1", "length": 425, "uniprot_id": "TNR16_RAT", "protein_name": "Tumor necrosis factor receptor superfamily member 16", "refseq_ac": "NP_036742", "refseq_name": "tumor necrosis factor receptor superfamily member 16 precursor", "gene_name": "Ngfr", "gene_names_uniprotkb": "Ngfr; Tnfrsf16", "gene_names_refseq": "LNGFR; Ngfr; RNNGFRR; Tnfrsf16; p75NTR; p75", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Structural Basis of p75 Transmembrane Domain Dimerization.", "journal": "The Journal of biological chemistry", "date": "2016", "authors": "Nadezhdin KD, Garcia-Carpio I, Goncharuk SA, Mineev KS, Arseniev AS, Vilar M", "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" } ], "reference": [ { "type": "PubMed", "id": "27056327", "url": "https://glygen.org/publication/PubMed/27056327" } ] } ], "crossref": [ { "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27056327", "url": "https://glygen.org/publication/PubMed/27056327", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "PVVTRGTTDNLIPVYCSILA", "down_seq": "VVVGLVAYIAFKRWNSCKQN", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "I", "comment": "No effect on dimerization.", "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" }, { "database": "PubMed", "id": "27056327", "url": "https://glygen.org/publication/PubMed/27056327" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "61", "end_pos": "61" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "61", "end_pos": "61" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "366", "end_pos": "366" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P07174-1.257.257", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P07174-1.266.266", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P07174-1.266.266", "start_pos": 266, "end_pos": 266, "uniprot_canonical_ac": "P07174-1", "length": 425, "uniprot_id": "TNR16_RAT", "protein_name": "Tumor necrosis factor receptor superfamily member 16", "refseq_ac": "NP_036742", "refseq_name": "tumor necrosis factor receptor superfamily member 16 precursor", "gene_name": "Ngfr", "gene_names_uniprotkb": "Ngfr; Tnfrsf16", "gene_names_refseq": "LNGFR; Ngfr; RNNGFRR; Tnfrsf16; p75NTR; p75", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Structural Basis of p75 Transmembrane Domain Dimerization.", "journal": "The Journal of biological chemistry", "date": "2016", "authors": "Nadezhdin KD, Garcia-Carpio I, Goncharuk SA, Mineev KS, Arseniev AS, Vilar M", "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" } ], "reference": [ { "type": "PubMed", "id": "27056327", "url": "https://glygen.org/publication/PubMed/27056327" } ] } ], "crossref": [ { "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27056327", "url": "https://glygen.org/publication/PubMed/27056327", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "RGTTDNLIPVYCSILAAVVV", "down_seq": "LVAYIAFKRWNSCKQNKQGA", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "I", "comment": "No effect on dimerization. Loss of dimerization; when associated with I-257.", "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" }, { "database": "PubMed", "id": "27056327", "url": "https://glygen.org/publication/PubMed/27056327" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "61", "end_pos": "61" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "61", "end_pos": "61" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "366", "end_pos": "366" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P07174-1.257.257", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P07174-1.262.262", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P07174-1.312.312", "start_pos": 312, "end_pos": 312, "uniprot_canonical_ac": "P07174-1", "length": 425, "uniprot_id": "TNR16_RAT", "protein_name": "Tumor necrosis factor receptor superfamily member 16", "refseq_ac": "NP_036742", "refseq_name": "tumor necrosis factor receptor superfamily member 16 precursor", "gene_name": "Ngfr", "gene_names_uniprotkb": "Ngfr; Tnfrsf16", "gene_names_refseq": "LNGFR; Ngfr; RNNGFRR; Tnfrsf16; p75NTR; p75", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NQTPPPEGEKLHSDSGISVD", "down_seq": "QSLHDQQTHTQTASGQALKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" } ], "site_lbl": "Ser312" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "61", "end_pos": "61" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "61", "end_pos": "61" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "366", "end_pos": "366" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P07174-1.337.337", "start_pos": 337, "end_pos": 337, "uniprot_canonical_ac": "P07174-1", "length": 425, "uniprot_id": "TNR16_RAT", "protein_name": "Tumor necrosis factor receptor superfamily member 16", "refseq_ac": "NP_036742", "refseq_name": "tumor necrosis factor receptor superfamily member 16 precursor", "gene_name": "Ngfr", "gene_names_uniprotkb": "Ngfr; Tnfrsf16", "gene_names_refseq": "LNGFR; Ngfr; RNNGFRR; Tnfrsf16; p75NTR; p75", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Role of tyrosine phosphorylation in the antioxidant effects of the p75 neurotrophin receptor.", "journal": "Oxidative medicine and cellular longevity", "date": "2009", "authors": "Zhang T, Mi Z, Schor NF", "evidence": [ { "database": "iPTMnet", "id": "P07174", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P07174" } ], "reference": [ { "type": "PubMed", "id": "20716910", "url": "https://glygen.org/publication/PubMed/20716910" } ] } ], "crossref": [ { "id": "P07174", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P07174", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20716910", "url": "https://glygen.org/publication/PubMed/20716910", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DQQTHTQTASGQALKGDGNL", "down_seq": "SSLPLTKREEVEKLLNGDTW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P07174", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P07174" }, { "database": "PubMed", "id": "20716910", "url": "https://glygen.org/publication/PubMed/20716910" } ], "site_lbl": "Tyr337" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "61", "end_pos": "61" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "61", "end_pos": "61" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "366", "end_pos": "366" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P07174-1.366.366", "start_pos": 366, "end_pos": 366, "uniprot_canonical_ac": "P07174-1", "length": 425, "uniprot_id": "TNR16_RAT", "protein_name": "Tumor necrosis factor receptor superfamily member 16", "refseq_ac": "NP_036742", "refseq_name": "tumor necrosis factor receptor superfamily member 16 precursor", "gene_name": "Ngfr", "gene_names_uniprotkb": "Ngfr; Tnfrsf16", "gene_names_refseq": "LNGFR; Ngfr; RNNGFRR; Tnfrsf16; p75NTR; p75", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07174", "url": "https://www.uniprot.org/uniprotkb/P07174" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Role of tyrosine phosphorylation in the antioxidant effects of the p75 neurotrophin receptor.", "journal": "Oxidative medicine and cellular longevity", "date": "2009", "authors": "Zhang T, Mi Z, Schor NF", "evidence": [ { "database": "iPTMnet", "id": "P07174", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P07174" } ], "reference": [ { "type": "PubMed", "id": "20716910", "url": "https://glygen.org/publication/PubMed/20716910" } ] } ], "crossref": [ { "id": "P07174", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P07174", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20716910", "url": "https://glygen.org/publication/PubMed/20716910", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "EEVEKLLNGDTWRHLAGELG", "down_seq": "QPEHIDSFTHEACPVRALLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P07174", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P07174" }, { "database": "PubMed", "id": "20716910", "url": "https://glygen.org/publication/PubMed/20716910" } ], "site_lbl": "Tyr366" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "61", "end_pos": "61" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "61", "end_pos": "61" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "366", "end_pos": "366" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P04694-1.448.448", "start_pos": 448, "end_pos": 448, "uniprot_canonical_ac": "P04694-1", "length": 454, "uniprot_id": "ATTY_RAT", "protein_name": "Tyrosine aminotransferase", "refseq_ac": "NP_036800", "refseq_name": "tyrosine aminotransferase", "gene_name": "Tat", "gene_names_uniprotkb": "Tat", "gene_names_refseq": "Tat", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P04694", "url": "https://www.uniprot.org/uniprotkb/P04694" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P04694", "url": "https://www.uniprot.org/uniprotkb/P04694", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEACSRIQEFCEQHYHCAEG", "down_seq": "QEECDK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P04694", "url": "https://www.uniprot.org/uniprotkb/P04694" } ], "site_lbl": "Ser448" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "448", "end_pos": "448" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P14925-1.765.765", "start_pos": 765, "end_pos": 765, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Purification and characterization of functional recombinant alpha-amidating enzyme secreted from mammalian cells.", "journal": "The Journal of biological chemistry", "date": "1990", "authors": "Beaudry GA, Mehta NM, Ray ML, Bertelsen AH", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925#ptm_processing" }, { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "reference": [ { "type": "PubMed", "id": "2211657", "url": "https://glygen.org/publication/PubMed/2211657" } ] }, { "title": "Topological switching of the COOH-terminal domain of peptidylglycine alpha-amidating monooxygenase by alternative RNA splicing.", "journal": "Archives of biochemistry and biophysics", "date": "1993", "authors": "Yun HY, Johnson RC, Mains RE, Eipper BA", "evidence": [ { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "7680192", "url": "https://glygen.org/publication/PubMed/7680192" } ] } ], "crossref": [ { "id": "A0A8L2QMN5", "url": "https://www.uniprot.org/uniprotkb/A0A8L2QMN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PIRSR600720-4", "url": "https://www.uniprot.org/unirule/PIRSR600720-4", "database": "PIR Site Rule", "categories": [ "Other" ] }, { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "2211657", "url": "https://glygen.org/publication/PubMed/2211657", "database": "PubMed", "categories": [ "Other" ] }, { "id": "A0ABK0KWC4", "url": "https://www.uniprot.org/uniprotkb/A0ABK0KWC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7680192", "url": "https://glygen.org/publication/PubMed/7680192", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FAVNGKPYFGDQEPVQGFVM", "down_seq": "FSSGEIIDVFKPVRKHFDMP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn765", "evidence": [ { "id": "A0A8L2QMN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8L2QMN5#ptm_processing" }, { "id": "PIRSR600720-4", "database": "PIR Site Rule", "url": "https://www.uniprot.org/unirule/PIRSR600720-4" }, { "id": "P14925", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P14925#ptm_processing" }, { "id": "2211657", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/2211657" }, { "id": "A0ABK0KWC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0ABK0KWC4#ptm_processing" }, { "id": "7680192", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/7680192" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "P14925-1.784.784", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Effects of copper occupancy on the conformational landscape of peptidylglycine \u03b1-hydroxylating monooxygenase.", "journal": "Communications biology", "date": "2018", "authors": "Maheshwari Sweta, Shimokawa Chizu, Rudzka Katarzyna, Kline Chelsey D, Eipper Betty A, Mains Richard E, Gabelli Sandra B, Blackburn Ninian, Amzel L Mario", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "reference": [ { "type": "PubMed", "id": "30271955", "url": "https://glygen.org/publication/PubMed/30271955" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30271955", "url": "https://glygen.org/publication/PubMed/30271955", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "PVDEEAFVIDFKPRASMDTV", "down_seq": "HMLLFGCNMPSSTGSYWFCD", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Impaired Cu(2+)-binding.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "30271955", "url": "https://glygen.org/publication/PubMed/30271955" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P14925-1.108.108", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Effects of copper occupancy on the conformational landscape of peptidylglycine \u03b1-hydroxylating monooxygenase.", "journal": "Communications biology", "date": "2018", "authors": "Maheshwari Sweta, Shimokawa Chizu, Rudzka Katarzyna, Kline Chelsey D, Eipper Betty A, Mains Richard E, Gabelli Sandra B, Blackburn Ninian, Amzel L Mario", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "reference": [ { "type": "PubMed", "id": "30271955", "url": "https://glygen.org/publication/PubMed/30271955" } ] }, { "title": "The catalytic core of peptidylglycine alpha-hydroxylating monooxygenase: investigation by site-directed mutagenesis, Cu X-ray absorption spectroscopy, and electron paramagnetic resonance.", "journal": "Biochemistry", "date": "1995-03-07", "authors": "Eipper B A, Quon A S, Mains R E, Boswell J S, Blackburn N J", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "reference": [ { "type": "PubMed", "id": "7893699", "url": "https://glygen.org/publication/PubMed/7893699" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30271955", "url": "https://glygen.org/publication/PubMed/30271955", "database": "PubMed", "categories": [ "Other" ] }, { "id": "7893699", "url": "https://glygen.org/publication/PubMed/7893699", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "VDEEAFVIDFKPRASMDTVH", "down_seq": "MLLFGCNMPSSTGSYWFCDE", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Impaired Cu(2+)-binding; forms a closed conformer in the presence of citrate with a reduced Cu(2+)-Cu(2+) site separation of 4 Angstroms. Abolished peptidylglycine alpha-hydroxylating monooxygenase activity.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "30271955", "url": "https://glygen.org/publication/PubMed/30271955" }, { "database": "PubMed", "id": "7893699", "url": "https://glygen.org/publication/PubMed/7893699" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P14925-1.107.107", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Effects of copper occupancy on the conformational landscape of peptidylglycine \u03b1-hydroxylating monooxygenase.", "journal": "Communications biology", "date": "2018", "authors": "Maheshwari Sweta, Shimokawa Chizu, Rudzka Katarzyna, Kline Chelsey D, Eipper Betty A, Mains Richard E, Gabelli Sandra B, Blackburn Ninian, Amzel L Mario", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "reference": [ { "type": "PubMed", "id": "30271955", "url": "https://glygen.org/publication/PubMed/30271955" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30271955", "url": "https://glygen.org/publication/PubMed/30271955", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "KGVGFRVGGETGSKYFVLQV", "down_seq": "YGDISAFRDNHKDCSGVSVH", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Impaired Cu(2+)-binding.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "30271955", "url": "https://glygen.org/publication/PubMed/30271955" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.244.244", "start_pos": 244, "end_pos": 244, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "The catalytic core of peptidylglycine alpha-hydroxylating monooxygenase: investigation by site-directed mutagenesis, Cu X-ray absorption spectroscopy, and electron paramagnetic resonance.", "journal": "Biochemistry", "date": "1995-03-07", "authors": "Eipper B A, Quon A S, Mains R E, Boswell J S, Blackburn N J", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "reference": [ { "type": "PubMed", "id": "7893699", "url": "https://glygen.org/publication/PubMed/7893699" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7893699", "url": "https://glygen.org/publication/PubMed/7893699", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "DISCQYKMYPMHVFAYRVHT", "down_seq": "HLGKVVSGYRVRNGQWTLIG", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Abolished peptidylglycine alpha-hydroxylating monooxygenase activity.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "7893699", "url": "https://glygen.org/publication/PubMed/7893699" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.272.272", "start_pos": 272, "end_pos": 272, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "New structures reveal flexible dynamics between the subdomains of peptidylglycine monooxygenase. Implications for an open to closed mechanism.", "journal": "Protein science : a publication of the Protein Society", "date": "2023-04", "authors": "Arias Renee J, Welch Evan F, Blackburn Ninian J", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "reference": [ { "type": "PubMed", "id": "36880254", "url": "https://glygen.org/publication/PubMed/36880254" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "36880254", "url": "https://glygen.org/publication/PubMed/36880254", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Q", "start_aa": "Q", "up_seq": "GYRVRNGQWTLIGRQNPQLP", "down_seq": "AFYPVEHPVDVTFGDILAAR", "mutagenesis": [ { "sequence_org": "Q", "sequence_mut": "A", "comment": "Induces a fully open peptidylglycine monooxygenase structure with Cu(2+) distances of 14 Angstroms.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "36880254", "url": "https://glygen.org/publication/PubMed/36880254" } ] }, { "sequence_org": "Q", "sequence_mut": "E", "comment": "Induces a fully open peptidylglycine monooxygenase structure with Cu(2+) distances of 14 Angstroms.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "36880254", "url": "https://glygen.org/publication/PubMed/36880254" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.314.314", "start_pos": 314, "end_pos": 314, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "The catalytic core of peptidylglycine alpha-hydroxylating monooxygenase: investigation by site-directed mutagenesis, Cu X-ray absorption spectroscopy, and electron paramagnetic resonance.", "journal": "Biochemistry", "date": "1995-03-07", "authors": "Eipper B A, Quon A S, Mains R E, Boswell J S, Blackburn N J", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "reference": [ { "type": "PubMed", "id": "7893699", "url": "https://glygen.org/publication/PubMed/7893699" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7893699", "url": "https://glygen.org/publication/PubMed/7893699", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "VFTGEGRTEATHIGGTSSDE", "down_seq": "CNLYIMYYMEAKYALSFMTC", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "I", "comment": "Abolished peptidylglycine alpha-hydroxylating monooxygenase activity.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "7893699", "url": "https://glygen.org/publication/PubMed/7893699" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.533.533", "start_pos": 533, "end_pos": 533, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amidation of bioactive peptides: the structure of the lyase domain of the amidating enzyme.", "journal": "Structure (London, England : 1993)", "date": "2009", "authors": "Chufan EE, De M, Eipper BA, Mains RE, Amzel LM", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "reference": [ { "type": "PubMed", "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "LPGQVSGVALDSKNNLVIFH", "down_seq": "GDHVWDGNSFDSKFVYQQRG", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Abolishes peptidyl-alpha-hydroxyglycine alpha-amidating lyase activity.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476" } ] }, { "sequence_org": "R", "sequence_mut": "Q", "comment": "Abolishes peptidyl-alpha-hydroxyglycine alpha-amidating lyase activity.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.706.706", "start_pos": 706, "end_pos": 706, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amidation of bioactive peptides: the structure of the lyase domain of the amidating enzyme.", "journal": "Structure (London, England : 1993)", "date": "2009", "authors": "Chufan EE, De M, Eipper BA, Mains RE, Amzel LM", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "reference": [ { "type": "PubMed", "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "FSVPHSLALVPHLDQLCVAD", "down_seq": "ENGRIQCFKTDTKEFVREIK", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Abolishes peptidyl-alpha-hydroxyglycine alpha-amidating lyase activity.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476" } ] }, { "sequence_org": "R", "sequence_mut": "Q", "comment": "Reduces peptidyl-alpha-hydroxyglycine alpha-amidating lyase activity.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.784.784", "start_pos": 784, "end_pos": 784, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amidation of bioactive peptides: the structure of the lyase domain of the amidating enzyme.", "journal": "Structure (London, England : 1993)", "date": "2009", "authors": "Chufan EE, De M, Eipper BA, Mains RE, Amzel LM", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "reference": [ { "type": "PubMed", "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "MNFSSGEIIDVFKPVRKHFD", "down_seq": "PHDIVASEDGTVYIGDAHTN", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "A", "comment": "Abolishes peptidyl-alpha-hydroxyglycine alpha-amidating lyase activity.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476" } ] }, { "sequence_org": "M", "sequence_mut": "Q", "comment": "Abolishes peptidyl-alpha-hydroxyglycine alpha-amidating lyase activity.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P14925-1.765.765", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P14925-1.787.787", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.787.787", "start_pos": 787, "end_pos": 787, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amidation of bioactive peptides: the structure of the lyase domain of the amidating enzyme.", "journal": "Structure (London, England : 1993)", "date": "2009", "authors": "Chufan EE, De M, Eipper BA, Mains RE, Amzel LM", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "reference": [ { "type": "PubMed", "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "SSGEIIDVFKPVRKHFDMPH", "down_seq": "IVASEDGTVYIGDAHTNTVW", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Reduces peptidyl-alpha-hydroxyglycine alpha-amidating lyase activity.", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "19604476", "url": "https://glygen.org/publication/PubMed/19604476" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P14925-1.784.784", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.921.921", "start_pos": 921, "end_pos": 921, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HDRKLESSSGRVLGRFRGKG", "down_seq": "GGLNLGNFFASRKGYSRKGF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "site_lbl": "Ser921" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "P14925-1.932.932", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P14925-1.937.937", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P14925-1.932.932", "start_pos": 932, "end_pos": 932, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VLGRFRGKGSGGLNLGNFFA", "down_seq": "RKGYSRKGFDRVSTEGSDQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "site_lbl": "Ser932" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P14925-1.921.921", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P14925-1.937.937", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P14925-1.945.945", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P14925-1.946.946", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P14925-1.949.949", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P14925-1.937.937", "start_pos": 937, "end_pos": 937, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Routing of membrane proteins to large dense core vesicles in PC12 cells.", "journal": "Journal of molecular neuroscience : MN", "date": "2002", "authors": "Marx R, Mains RE", "evidence": [ { "database": "iPTMnet", "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925" } ], "reference": [ { "type": "PubMed", "id": "11931341", "url": "https://glygen.org/publication/PubMed/11931341" } ] } ], "crossref": [ { "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "11931341", "url": "https://glygen.org/publication/PubMed/11931341", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGKGSGGLNLGNFFASRKGY", "down_seq": "RKGFDRVSTEGSDQEKDEDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925" }, { "database": "PubMed", "id": "11931341", "url": "https://glygen.org/publication/PubMed/11931341" } ], "site_lbl": "Ser937" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P14925-1.921.921", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P14925-1.932.932", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P14925-1.945.945", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P14925-1.946.946", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P14925-1.949.949", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.945.945", "start_pos": 945, "end_pos": 945, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "iPTMnet", "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NLGNFFASRKGYSRKGFDRV", "down_seq": "TEGSDQEKDEDDGTESEEEY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925" } ], "site_lbl": "Ser945" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P14925-1.932.932", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P14925-1.937.937", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P14925-1.946.946", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P14925-1.949.949", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P14925-1.959.959", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P14925-1.961.961", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.946.946", "start_pos": 946, "end_pos": 946, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LGNFFASRKGYSRKGFDRVS", "down_seq": "EGSDQEKDEDDGTESEEEYS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "site_lbl": "Thr946" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P14925-1.932.932", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P14925-1.937.937", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P14925-1.945.945", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P14925-1.949.949", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P14925-1.959.959", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P14925-1.961.961", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P14925-1.949.949", "start_pos": 949, "end_pos": 949, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "iPTMnet", "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FFASRKGYSRKGFDRVSTEG", "down_seq": "DQEKDEDDGTESEEEYSAPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925" } ], "site_lbl": "Ser949" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P14925-1.932.932", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P14925-1.937.937", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P14925-1.945.945", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P14925-1.946.946", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P14925-1.959.959", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P14925-1.961.961", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.959.959", "start_pos": 959, "end_pos": 959, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "iPTMnet", "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KGFDRVSTEGSDQEKDEDDG", "down_seq": "ESEEEYSAPLPKPAPSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925" } ], "site_lbl": "Thr959" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P14925-1.945.945", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P14925-1.946.946", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P14925-1.949.949", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P14925-1.961.961", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14925-1.961.961", "start_pos": 961, "end_pos": 961, "uniprot_canonical_ac": "P14925-1", "length": 976, "uniprot_id": "AMD_RAT", "protein_name": "Peptidylglycine alpha-amidating monooxygenase", "refseq_ac": "NP_037132", "refseq_name": "peptidylglycine alpha-amidating monooxygenase precursor", "gene_name": "Pam", "gene_names_uniprotkb": "Pam", "gene_names_refseq": "PHM; Pam", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "iPTMnet", "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FDRVSTEGSDQEKDEDDGTE", "down_seq": "EEEYSAPLPKPAPSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P14925", "url": "https://www.uniprot.org/uniprotkb/P14925" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P14925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14925" } ], "site_lbl": "Ser961" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "765", "end_pos": "765" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "533", "end_pos": "533" }, { "start_pos": "706", "end_pos": "706" }, { "start_pos": "784", "end_pos": "784" }, { "start_pos": "787", "end_pos": "787" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "921", "end_pos": "921" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "959", "end_pos": "959" }, { "start_pos": "961", "end_pos": "961" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P14925-1.945.945", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P14925-1.946.946", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P14925-1.949.949", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P14925-1.959.959", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48442-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ATLSFVAQNKIDSLNLDEFC", "down_seq": "CSEHIPSTIAVVGATGSGVS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn130", "evidence": [ { "id": "P48442", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48442#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48442-1.261.261", "start_pos": 261, "end_pos": 261, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ELISQYSDEEEIQQVVEVIQ", "down_seq": "STAKVIVVFSSGPDLEPLIK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn261", "evidence": [ { "id": "P48442", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48442#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48442-1.287.287", "start_pos": 287, "end_pos": 287, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IVVFSSGPDLEPLIKEIVRR", "down_seq": "ITGRIWLASEAWASSSLIAM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn287", "evidence": [ { "id": "P48442", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48442#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48442-1.386.386", "start_pos": 386, "end_pos": 386, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GPLPVDTFVRSHEEGGNRLL", "down_seq": "SSTAFRPLCTGDENINSVET", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn386", "evidence": [ { "id": "P48442", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48442#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48442-1.446.446", "start_pos": 446, "end_pos": 446, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SIAHALQDIYTCLPGRGLFT", "down_seq": "GSCADIKKVEAWQVLKHLRH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn446", "evidence": [ { "id": "P48442", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48442#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48442-1.468.468", "start_pos": 468, "end_pos": 468, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SCADIKKVEAWQVLKHLRHL", "down_seq": "FTNNMGEQVTFDECGDLVGN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn468", "evidence": [ { "id": "P48442", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48442#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "P48442-1.488.488", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48442-1.488.488", "start_pos": 488, "end_pos": 488, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NFTNNMGEQVTFDECGDLVG", "down_seq": "YSIINWHLSPEDGSIVFKEV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn488", "evidence": [ { "id": "P48442", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48442#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P48442-1.468.468", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48442-1.541.541", "start_pos": 541, "end_pos": 541, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LFINEEKILWSGFSREVPFS", "down_seq": "CSRDCQAGTRKGIIEGEPTC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn541", "evidence": [ { "id": "P48442", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48442#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48442-1.594.594", "start_pos": 594, "end_pos": 594, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SGETDASACDKCPDDFWSNE", "down_seq": "HTSCIAKEIEFLAWTEPFGI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn594", "evidence": [ { "id": "P48442", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48442#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48442-1.90.90", "start_pos": 90, "end_pos": 90, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WLQAMIFAIEEINSSPSLLP", "down_seq": "MTLGYRIFDTCNTVSKALEA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn90", "evidence": [ { "id": "P48442", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48442#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48442-1.1062.1062", "start_pos": 1062, "end_pos": 1062, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QPEMESSDEMSPALVMSTSR", "down_seq": "FVISGGGSSVTENVLHS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "site_lbl": "Ser1062" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48442-1.888.888", "start_pos": 888, "end_pos": 888, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Post-conditioning protects rat cardiomyocytes via PKCepsilon-mediated calcium-sensing receptors.", "journal": "Biochemical and biophysical research communications", "date": "2007-09-28", "authors": "Zhang Wei-Hua, Lu Fang-Hao, Zhao Ya-Jun, Wang Li-Na, Tian Ye, Pan Zhen-Wei, Lv Yan-Jie, Wang Yan-Li, Du Li-Juan, Sun Zhi-Rui, Yang Bao-Feng, Wang Rui, Xu Chang-Qing", "evidence": [ { "database": "iPTMnet", "id": "P48442", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48442" } ], "reference": [ { "type": "PubMed", "id": "17673178", "url": "https://glygen.org/publication/PubMed/17673178" } ] } ], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P48442", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48442", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17673178", "url": "https://glygen.org/publication/PubMed/17673178", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TIEEVRSSTAAHAFKVAARA", "down_seq": "LRRPNISRKRSSSLGGSTGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" }, { "database": "iPTMnet", "id": "P48442", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48442" }, { "database": "PubMed", "id": "17673178", "url": "https://glygen.org/publication/PubMed/17673178" } ], "site_lbl": "Thr888" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "P48442-1.899.899", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48442-1.899.899", "start_pos": 899, "end_pos": 899, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HAFKVAARATLRRPNISRKR", "down_seq": "SSLGGSTGSIPSSSISSKSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "site_lbl": "Ser899" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P48442-1.888.888", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48442-1.920.920", "start_pos": 920, "end_pos": 920, "uniprot_canonical_ac": "P48442-1", "length": 1079, "uniprot_id": "CASR_RAT", "protein_name": "Extracellular calcium-sensing receptor", "refseq_ac": "NP_001296567", "refseq_name": "extracellular calcium-sensing receptor precursor", "gene_name": "Casr", "gene_names_uniprotkb": "Casr; Gprc2a; Pcar1", "gene_names_refseq": "Casr; PCaR1; RaKCaR", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSLGGSTGSIPSSSISSKSN", "down_seq": "EDRFPQPERQKQQQPLSLTQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48442", "url": "https://www.uniprot.org/uniprotkb/P48442" } ], "site_lbl": "Ser920" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1062", "end_pos": "1062" }, { "start_pos": "888", "end_pos": "888" }, { "start_pos": "899", "end_pos": "899" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P61023-1.134.134", "start_pos": 134, "end_pos": 134, "uniprot_canonical_ac": "P61023-1", "length": 195, "uniprot_id": "CHP1_RAT", "protein_name": "Calcineurin B homologous protein 1", "refseq_ac": "NP_077053", "refseq_name": "calcineurin B homologous protein 1", "gene_name": "Chp1", "gene_names_uniprotkb": "Chp1; Chp", "gene_names_refseq": "Chp1; Chp; Wrch2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "A novel Ca2+-binding protein, p22, is required for constitutive membrane traffic.", "journal": "The Journal of biological chemistry", "date": "1996", "authors": "Barroso MR, Bernd KK, DeWitt ND, Chang A, Mills K, Sztul ES", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "8626580", "url": "https://glygen.org/publication/PubMed/8626580" } ] }, { "title": "The EF-hand Ca2+-binding protein p22 plays a role in microtubule and endoplasmic reticulum organization and dynamics with distinct Ca2+-binding requirements.", "journal": "Molecular biology of the cell", "date": "2004", "authors": "Andrade J, Zhao H, Titus B, Timm Pearce S, Barroso M", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "14657246", "url": "https://glygen.org/publication/PubMed/14657246" } ] } ], "crossref": [ { "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8626580", "url": "https://glygen.org/publication/PubMed/8626580", "database": "PubMed", "categories": [ "Other" ] }, { "id": "14657246", "url": "https://glygen.org/publication/PubMed/14657246", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "KLHFAFRLYDLDKDDKISRD", "down_seq": "LLQVLRMMVGVNISDEQLGS", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Inhibits calcium-mediated conformational changes. Loss of transcytotic targeting/fusion function. Reduces association with membranes. Does not affect microtubule formation.", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" }, { "database": "PubMed", "id": "8626580", "url": "https://glygen.org/publication/PubMed/8626580" }, { "database": "PubMed", "id": "14657246", "url": "https://glygen.org/publication/PubMed/14657246" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P61023-1.138.138", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P61023-1.139.139", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P61023-1.143.143", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P61023-1.145.145", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P61023-1.147.147", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P61023-1.138.138", "start_pos": 138, "end_pos": 138, "uniprot_canonical_ac": "P61023-1", "length": 195, "uniprot_id": "CHP1_RAT", "protein_name": "Calcineurin B homologous protein 1", "refseq_ac": "NP_077053", "refseq_name": "calcineurin B homologous protein 1", "gene_name": "Chp1", "gene_names_uniprotkb": "Chp1; Chp", "gene_names_refseq": "Chp1; Chp; Wrch2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Two nuclear export signals specify the cytoplasmic localization of calcineurin B homologous protein 1.", "journal": "Journal of biochemistry", "date": "2003", "authors": "Nagita M, Inoue H, Nakamura N, Kanazawa H", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "crossref": [ { "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "AFRLYDLDKDDKISRDELLQ", "down_seq": "LRMMVGVNISDEQLGSIADR", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Predominantly located in the cytoplasm; when associated with A-139. Predominantly located in the nucleus; when associated with A-139; A-179 and A-180.", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" }, { "database": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P61023-1.134.134", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P61023-1.139.139", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P61023-1.143.143", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P61023-1.145.145", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P61023-1.147.147", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P61023-1.139.139", "start_pos": 139, "end_pos": 139, "uniprot_canonical_ac": "P61023-1", "length": 195, "uniprot_id": "CHP1_RAT", "protein_name": "Calcineurin B homologous protein 1", "refseq_ac": "NP_077053", "refseq_name": "calcineurin B homologous protein 1", "gene_name": "Chp1", "gene_names_uniprotkb": "Chp1; Chp", "gene_names_refseq": "Chp1; Chp; Wrch2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Two nuclear export signals specify the cytoplasmic localization of calcineurin B homologous protein 1.", "journal": "Journal of biochemistry", "date": "2003", "authors": "Nagita M, Inoue H, Nakamura N, Kanazawa H", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "crossref": [ { "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "FRLYDLDKDDKISRDELLQV", "down_seq": "RMMVGVNISDEQLGSIADRT", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Predominantly located in the cytoplasm; when associated with A-138. Predominantly located in the nucleus; when associated with A-138; A-179 and A-180.", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" }, { "database": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P61023-1.134.134", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P61023-1.138.138", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P61023-1.143.143", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P61023-1.145.145", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P61023-1.147.147", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P61023-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "P61023-1", "length": 195, "uniprot_id": "CHP1_RAT", "protein_name": "Calcineurin B homologous protein 1", "refseq_ac": "NP_077053", "refseq_name": "calcineurin B homologous protein 1", "gene_name": "Chp1", "gene_names_uniprotkb": "Chp1; Chp", "gene_names_refseq": "Chp1; Chp; Wrch2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Nuclear-localized calcineurin homologous protein CHP1 interacts with upstream binding factor and inhibits ribosomal RNA synthesis.", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "Jimenez-Vidal M, Srivastava J, Putney LK, Barber DL", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019" } ] }, { "title": "Two nuclear export signals specify the cytoplasmic localization of calcineurin B homologous protein 1.", "journal": "Journal of biochemistry", "date": "2003", "authors": "Nagita M, Inoue H, Nakamura N, Kanazawa H", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "crossref": [ { "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "DLDKDDKISRDELLQVLRMM", "down_seq": "GVNISDEQLGSIADRTIQEA", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Predominantly located in the cytoplasm; when associated with A-145 and A-147. Predominantly located in the nucleus; when associated with A-145; A-147; A-183 and A-185.", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" }, { "database": "PubMed", "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019" }, { "database": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P61023-1.134.134", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P61023-1.138.138", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P61023-1.139.139", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P61023-1.145.145", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P61023-1.147.147", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P61023-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "P61023-1", "length": 195, "uniprot_id": "CHP1_RAT", "protein_name": "Calcineurin B homologous protein 1", "refseq_ac": "NP_077053", "refseq_name": "calcineurin B homologous protein 1", "gene_name": "Chp1", "gene_names_uniprotkb": "Chp1; Chp", "gene_names_refseq": "Chp1; Chp; Wrch2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Nuclear-localized calcineurin homologous protein CHP1 interacts with upstream binding factor and inhibits ribosomal RNA synthesis.", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "Jimenez-Vidal M, Srivastava J, Putney LK, Barber DL", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019" } ] }, { "title": "Two nuclear export signals specify the cytoplasmic localization of calcineurin B homologous protein 1.", "journal": "Journal of biochemistry", "date": "2003", "authors": "Nagita M, Inoue H, Nakamura N, Kanazawa H", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "crossref": [ { "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "DKDDKISRDELLQVLRMMVG", "down_seq": "NISDEQLGSIADRTIQEADQ", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Predominantly located in the cytoplasm; when associated with A-143 and A-147. Predominantly located in the nucleus; when associated with A-143; A-147; A-183 and A-185.", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" }, { "database": "PubMed", "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019" }, { "database": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P61023-1.134.134", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P61023-1.138.138", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P61023-1.139.139", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P61023-1.143.143", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P61023-1.147.147", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P61023-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "P61023-1", "length": 195, "uniprot_id": "CHP1_RAT", "protein_name": "Calcineurin B homologous protein 1", "refseq_ac": "NP_077053", "refseq_name": "calcineurin B homologous protein 1", "gene_name": "Chp1", "gene_names_uniprotkb": "Chp1; Chp", "gene_names_refseq": "Chp1; Chp; Wrch2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Nuclear-localized calcineurin homologous protein CHP1 interacts with upstream binding factor and inhibits ribosomal RNA synthesis.", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "Jimenez-Vidal M, Srivastava J, Putney LK, Barber DL", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019" } ] }, { "title": "Two nuclear export signals specify the cytoplasmic localization of calcineurin B homologous protein 1.", "journal": "Journal of biochemistry", "date": "2003", "authors": "Nagita M, Inoue H, Nakamura N, Kanazawa H", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "crossref": [ { "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "DDKISRDELLQVLRMMVGVN", "down_seq": "SDEQLGSIADRTIQEADQDG", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "A", "comment": "Predominantly located in the cytoplasm; when associated with A-143 and A-145. Predominantly located in the nucleus; when associated with A-143; A-145; A-183 and A-185.", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" }, { "database": "PubMed", "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019" }, { "database": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P61023-1.134.134", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P61023-1.138.138", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P61023-1.139.139", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P61023-1.143.143", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P61023-1.145.145", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P61023-1.179.179", "start_pos": 179, "end_pos": 179, "uniprot_canonical_ac": "P61023-1", "length": 195, "uniprot_id": "CHP1_RAT", "protein_name": "Calcineurin B homologous protein 1", "refseq_ac": "NP_077053", "refseq_name": "calcineurin B homologous protein 1", "gene_name": "Chp1", "gene_names_uniprotkb": "Chp1; Chp", "gene_names_refseq": "Chp1; Chp; Wrch2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Two nuclear export signals specify the cytoplasmic localization of calcineurin B homologous protein 1.", "journal": "Journal of biochemistry", "date": "2003", "authors": "Nagita M, Inoue H, Nakamura N, Kanazawa H", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "crossref": [ { "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "TIQEADQDGDSAISFTEFVK", "down_seq": "LEKVDVEQKMSIRFLH", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Predominantly located in the cytoplasm; when associated with A-180. Predominantly located in the nucleus; when associated with A-138; A-139 and A-180.", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" }, { "database": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P61023-1.180.180", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P61023-1.183.183", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P61023-1.185.185", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P61023-1.180.180", "start_pos": 180, "end_pos": 180, "uniprot_canonical_ac": "P61023-1", "length": 195, "uniprot_id": "CHP1_RAT", "protein_name": "Calcineurin B homologous protein 1", "refseq_ac": "NP_077053", "refseq_name": "calcineurin B homologous protein 1", "gene_name": "Chp1", "gene_names_uniprotkb": "Chp1; Chp", "gene_names_refseq": "Chp1; Chp; Wrch2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Two nuclear export signals specify the cytoplasmic localization of calcineurin B homologous protein 1.", "journal": "Journal of biochemistry", "date": "2003", "authors": "Nagita M, Inoue H, Nakamura N, Kanazawa H", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "crossref": [ { "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "IQEADQDGDSAISFTEFVKV", "down_seq": "EKVDVEQKMSIRFLH", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Predominantly located in the cytoplasm; when associated with A-179. Predominantly located in the nucleus; when associated with A-138; A-139 and A-179.", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" }, { "database": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P61023-1.179.179", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P61023-1.183.183", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P61023-1.185.185", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P61023-1.183.183", "start_pos": 183, "end_pos": 183, "uniprot_canonical_ac": "P61023-1", "length": 195, "uniprot_id": "CHP1_RAT", "protein_name": "Calcineurin B homologous protein 1", "refseq_ac": "NP_077053", "refseq_name": "calcineurin B homologous protein 1", "gene_name": "Chp1", "gene_names_uniprotkb": "Chp1; Chp", "gene_names_refseq": "Chp1; Chp; Wrch2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Nuclear-localized calcineurin homologous protein CHP1 interacts with upstream binding factor and inhibits ribosomal RNA synthesis.", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "Jimenez-Vidal M, Srivastava J, Putney LK, Barber DL", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019" } ] }, { "title": "Two nuclear export signals specify the cytoplasmic localization of calcineurin B homologous protein 1.", "journal": "Journal of biochemistry", "date": "2003", "authors": "Nagita M, Inoue H, Nakamura N, Kanazawa H", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "crossref": [ { "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "ADQDGDSAISFTEFVKVLEK", "down_seq": "DVEQKMSIRFLH", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Predominantly located in the cytoplasm; when associated with A-185. Predominantly located in the nucleus; when associated with A-143; A-145; A-147 and A-185.", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" }, { "database": "PubMed", "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019" }, { "database": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P61023-1.179.179", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P61023-1.180.180", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P61023-1.185.185", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P61023-1.185.185", "start_pos": 185, "end_pos": 185, "uniprot_canonical_ac": "P61023-1", "length": 195, "uniprot_id": "CHP1_RAT", "protein_name": "Calcineurin B homologous protein 1", "refseq_ac": "NP_077053", "refseq_name": "calcineurin B homologous protein 1", "gene_name": "Chp1", "gene_names_uniprotkb": "Chp1; Chp", "gene_names_refseq": "Chp1; Chp; Wrch2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Nuclear-localized calcineurin homologous protein CHP1 interacts with upstream binding factor and inhibits ribosomal RNA synthesis.", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "Jimenez-Vidal M, Srivastava J, Putney LK, Barber DL", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019" } ] }, { "title": "Two nuclear export signals specify the cytoplasmic localization of calcineurin B homologous protein 1.", "journal": "Journal of biochemistry", "date": "2003", "authors": "Nagita M, Inoue H, Nakamura N, Kanazawa H", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" } ], "reference": [ { "type": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "crossref": [ { "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "QDGDSAISFTEFVKVLEKVD", "down_seq": "EQKMSIRFLH", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Predominantly located in the cytoplasm; when associated with A-183. Predominantly located in the nucleus; when associated with A-143; A-145; A-147 and A-183.", "evidence": [ { "database": "UniProtKB", "id": "P61023", "url": "https://www.uniprot.org/uniprotkb/P61023" }, { "database": "PubMed", "id": "20720019", "url": "https://glygen.org/publication/PubMed/20720019" }, { "database": "PubMed", "id": "14769882", "url": "https://glygen.org/publication/PubMed/14769882" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "185", "end_pos": "185" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P61023-1.179.179", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P61023-1.180.180", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P61023-1.183.183", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5RKI0-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q5RKI0-1", "length": 606, "uniprot_id": "WDR1_RAT", "protein_name": "WD repeat-containing protein 1", "refseq_ac": "NP_001014157", "refseq_name": "WD repeat-containing protein 1", "gene_name": "Wdr1", "gene_names_uniprotkb": "Wdr1", "gene_names_refseq": "Wdr1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5RKI0", "url": "https://www.uniprot.org/uniprotkb/Q5RKI0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q5RKI0", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q5RKI0" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] } ], "crossref": [ { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5RKI0", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q5RKI0", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "Q5RKI0", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q5RKI0" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "238", "end_pos": "238" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5RKI0-1.238.238", "start_pos": 238, "end_pos": 238, "uniprot_canonical_ac": "Q5RKI0-1", "length": 606, "uniprot_id": "WDR1_RAT", "protein_name": "WD repeat-containing protein 1", "refseq_ac": "NP_001014157", "refseq_name": "WD repeat-containing protein 1", "gene_name": "Wdr1", "gene_names_uniprotkb": "Wdr1", "gene_names_refseq": "Wdr1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5RKI0", "url": "https://www.uniprot.org/uniprotkb/Q5RKI0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5RKI0", "url": "https://www.uniprot.org/uniprotkb/Q5RKI0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GKTGEKVCALGGSKAHDGGI", "down_seq": "AISWSPDSTHLLSASGDKTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q5RKI0", "url": "https://www.uniprot.org/uniprotkb/Q5RKI0" } ], "site_lbl": "Tyr238" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "238", "end_pos": "238" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6AYK4-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "Q6AYK4-1", "length": 326, "uniprot_id": "B2L14_RAT", "protein_name": "Apoptosis facilitator Bcl-2-like protein 14", "refseq_ac": "NP_001019509", "refseq_name": "apoptosis facilitator Bcl-2-like protein 14", "gene_name": "Bcl2l14", "gene_names_uniprotkb": "Bcl2l14", "gene_names_refseq": "Bcl2l14", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYK4", "url": "https://www.uniprot.org/uniprotkb/Q6AYK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AYK4", "url": "https://www.uniprot.org/uniprotkb/Q6AYK4" }, { "database": "iPTMnet", "id": "Q6AYK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYK4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AYK4", "url": "https://www.uniprot.org/uniprotkb/Q6AYK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AYK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYK4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FKILAFYARHHVFKSTPAVF", "down_seq": "PKLSRTRSLSQKALGTWSTD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYK4", "url": "https://www.uniprot.org/uniprotkb/Q6AYK4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AYK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYK4" } ], "site_lbl": "Ser44" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "44", "end_pos": "44" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JHW5-1.167.167", "start_pos": 167, "end_pos": 167, "uniprot_canonical_ac": "Q9JHW5-1", "length": 220, "uniprot_id": "VAMP7_RAT", "protein_name": "Vesicle-associated membrane protein 7", "refseq_ac": "NP_445983", "refseq_name": "vesicle-associated membrane protein 7", "gene_name": "Vamp7", "gene_names_uniprotkb": "Vamp7; Sybl1", "gene_names_refseq": "Sybl1; Vamp7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHW5", "url": "https://www.uniprot.org/uniprotkb/Q9JHW5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JHW5", "url": "https://www.uniprot.org/uniprotkb/Q9JHW5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VAQRGERLELLIDKTENLVD", "down_seq": "SVTFKTTSRNLARAMCVKNV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JHW5", "url": "https://www.uniprot.org/uniprotkb/Q9JHW5" } ], "site_lbl": "Ser167" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "168", "end_pos": "168" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9JHW5-1.168.168", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JHW5-1.168.168", "start_pos": 168, "end_pos": 168, "uniprot_canonical_ac": "Q9JHW5-1", "length": 220, "uniprot_id": "VAMP7_RAT", "protein_name": "Vesicle-associated membrane protein 7", "refseq_ac": "NP_445983", "refseq_name": "vesicle-associated membrane protein 7", "gene_name": "Vamp7", "gene_names_uniprotkb": "Vamp7; Sybl1", "gene_names_refseq": "Sybl1; Vamp7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHW5", "url": "https://www.uniprot.org/uniprotkb/Q9JHW5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JHW5", "url": "https://www.uniprot.org/uniprotkb/Q9JHW5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AQRGERLELLIDKTENLVDS", "down_seq": "VTFKTTSRNLARAMCVKNVK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JHW5", "url": "https://www.uniprot.org/uniprotkb/Q9JHW5" } ], "site_lbl": "Ser168" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "168", "end_pos": "168" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9JHW5-1.167.167", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35152-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "O35152-1", "length": 111, "uniprot_id": "BET1L_RAT", "protein_name": "BET1-like protein", "refseq_ac": "NP_062241", "refseq_name": "BET1-like protein", "gene_name": "Bet1l", "gene_names_uniprotkb": "Bet1l; Gs15", "gene_names_refseq": "Bet1l; Bet1; Gs15", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35152", "url": "https://www.uniprot.org/uniprotkb/O35152" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35152", "url": "https://www.uniprot.org/uniprotkb/O35152", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VDRENKRMADSLASKVTRLK", "down_seq": "LALDIDRDTEDQNRYLDGMD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35152", "url": "https://www.uniprot.org/uniprotkb/O35152" } ], "site_lbl": "Ser37" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35152-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "O35152-1", "length": 111, "uniprot_id": "BET1L_RAT", "protein_name": "BET1-like protein", "refseq_ac": "NP_062241", "refseq_name": "BET1-like protein", "gene_name": "Bet1l", "gene_names_uniprotkb": "Bet1l; Gs15", "gene_names_refseq": "Bet1l; Bet1; Gs15", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35152", "url": "https://www.uniprot.org/uniprotkb/O35152" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35152", "url": "https://www.uniprot.org/uniprotkb/O35152", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MADWTRAQ", "down_seq": "SGAVEEIVDRENKRMADSLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35152", "url": "https://www.uniprot.org/uniprotkb/O35152" } ], "site_lbl": "Ser9" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "37", "end_pos": "37" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8K4T4-1.137.137", "start_pos": 137, "end_pos": 137, "uniprot_canonical_ac": "Q8K4T4-1", "length": 1212, "uniprot_id": "FLIP1_RAT", "protein_name": "Filamin-A-interacting protein 1", "refseq_ac": "NP_663715", "refseq_name": "filamin-A-interacting protein 1", "gene_name": "Filip1", "gene_names_uniprotkb": "Filip1", "gene_names_refseq": "Filip1; Filip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8K4T4", "url": "https://www.uniprot.org/uniprotkb/Q8K4T4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q8K4T4", "url": "https://www.uniprot.org/uniprotkb/Q8K4T4" }, { "database": "iPTMnet", "id": "Q8K4T4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8K4T4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q8K4T4", "url": "https://www.uniprot.org/uniprotkb/Q8K4T4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8K4T4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8K4T4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AEPEKVLRVLHRDAILAQEK", "down_seq": "IGEDVYEKPISELDRLEEKQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8K4T4", "url": "https://www.uniprot.org/uniprotkb/Q8K4T4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q8K4T4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8K4T4" } ], "site_lbl": "Ser137" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "978", "end_pos": "978" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8K4T4-1.978.978", "start_pos": 978, "end_pos": 978, "uniprot_canonical_ac": "Q8K4T4-1", "length": 1212, "uniprot_id": "FLIP1_RAT", "protein_name": "Filamin-A-interacting protein 1", "refseq_ac": "NP_663715", "refseq_name": "filamin-A-interacting protein 1", "gene_name": "Filip1", "gene_names_uniprotkb": "Filip1", "gene_names_refseq": "Filip1; Filip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8K4T4", "url": "https://www.uniprot.org/uniprotkb/Q8K4T4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8K4T4", "url": "https://www.uniprot.org/uniprotkb/Q8K4T4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NVMSQKPKSADPTLGPERAM", "down_seq": "PVTITTISREKSPEGGRSAF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8K4T4", "url": "https://www.uniprot.org/uniprotkb/Q8K4T4" } ], "site_lbl": "Ser978" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "978", "end_pos": "978" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P63331-1.307.307", "start_pos": 307, "end_pos": 307, "uniprot_canonical_ac": "P63331-1", "length": 309, "uniprot_id": "PP2AA_RAT", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "refseq_ac": "NP_058735", "refseq_name": "serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform isoform 1", "gene_name": "Cdkl3; Ppp2ca", "gene_names_uniprotkb": "Cdkl3; Ppp2ca; Cdkl3", "gene_names_refseq": "PP2A; Pp2a1; Ppp2ca", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P63331", "url": "https://www.uniprot.org/uniprotkb/P63331" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P63331", "url": "https://www.uniprot.org/uniprotkb/P63331", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LQFDPAPRRGEPHVTRRTPD", "down_seq": "FL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P63331", "url": "https://www.uniprot.org/uniprotkb/P63331" } ], "site_lbl": "Tyr307" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "307", "end_pos": "307" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P82808-1.103.103", "start_pos": 103, "end_pos": 103, "uniprot_canonical_ac": "P82808-1", "length": 681, "uniprot_id": "GFPT1_RAT", "protein_name": "Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1", "refseq_ac": "NP_001005879", "refseq_name": "glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1", "gene_name": "Gfpt1", "gene_names_uniprotkb": "Gfpt1", "gene_names_refseq": "GFAT1m; GFAT1; GFAT; GFA; Gfpt1; Gfpt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P82808", "url": "https://www.uniprot.org/uniprotkb/P82808" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P82808", "url": "https://www.uniprot.org/uniprotkb/P82808", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IEFDVHLGIAHTRWATHGEP", "down_seq": "PVNSHPQRSDKNNEFIVIHN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P82808", "url": "https://www.uniprot.org/uniprotkb/P82808" } ], "site_lbl": "Ser103" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P82808-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "P82808-1", "length": 681, "uniprot_id": "GFPT1_RAT", "protein_name": "Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1", "refseq_ac": "NP_001005879", "refseq_name": "glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1", "gene_name": "Gfpt1", "gene_names_uniprotkb": "Gfpt1", "gene_names_refseq": "GFAT1m; GFAT1; GFAT; GFA; Gfpt1; Gfpt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P82808", "url": "https://www.uniprot.org/uniprotkb/P82808" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P82808", "url": "https://www.uniprot.org/uniprotkb/P82808" }, { "database": "iPTMnet", "id": "P82808", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82808" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P82808", "url": "https://www.uniprot.org/uniprotkb/P82808", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P82808", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82808", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PILYRTGKDKKGSCGLSRVD", "down_seq": "TTCLFPVEEKAVEYYFASDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P82808", "url": "https://www.uniprot.org/uniprotkb/P82808" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P82808", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P82808" } ], "site_lbl": "Ser243" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "243", "end_pos": "243" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B1H234-1.226.226", "start_pos": 226, "end_pos": 226, "uniprot_canonical_ac": "B1H234-1", "length": 649, "uniprot_id": "FLRT3_RAT", "protein_name": "Leucine-rich repeat transmembrane protein FLRT3", "refseq_ac": "NP_001119763", "refseq_name": "leucine-rich repeat transmembrane protein FLRT3 precursor", "gene_name": "Flrt3", "gene_names_uniprotkb": "Flrt3", "gene_names_refseq": "Flrt3; RGD1566005", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B1H234", "url": "https://www.uniprot.org/uniprotkb/B1H234" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B1H234", "url": "https://www.uniprot.org/uniprotkb/B1H234", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LDGNLLNNHGLGDKVFFNLV", "down_seq": "LTELSLVRNSLTAAPVNLPG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn226", "evidence": [ { "id": "B1H234", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/B1H234#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "226", "end_pos": "226" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "296", "end_pos": "296" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B1H234-1.282.282", "start_pos": 282, "end_pos": 282, "uniprot_canonical_ac": "B1H234-1", "length": 649, "uniprot_id": "FLRT3_RAT", "protein_name": "Leucine-rich repeat transmembrane protein FLRT3", "refseq_ac": "NP_001119763", "refseq_name": "leucine-rich repeat transmembrane protein FLRT3 precursor", "gene_name": "Flrt3", "gene_names_uniprotkb": "Flrt3", "gene_names_refseq": "Flrt3; RGD1566005", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B1H234", "url": "https://www.uniprot.org/uniprotkb/B1H234" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B1H234", "url": "https://www.uniprot.org/uniprotkb/B1H234", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VPPNAFSYLRQLYRLDMSNN", "down_seq": "LSNLPQGIFDDLDNITQLIL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn282", "evidence": [ { "id": "B1H234", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/B1H234#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "226", "end_pos": "226" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "296", "end_pos": "296" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "B1H234-1.296.296", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B1H234-1.296.296", "start_pos": 296, "end_pos": 296, "uniprot_canonical_ac": "B1H234-1", "length": 649, "uniprot_id": "FLRT3_RAT", "protein_name": "Leucine-rich repeat transmembrane protein FLRT3", "refseq_ac": "NP_001119763", "refseq_name": "leucine-rich repeat transmembrane protein FLRT3 precursor", "gene_name": "Flrt3", "gene_names_uniprotkb": "Flrt3", "gene_names_refseq": "Flrt3; RGD1566005", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B1H234", "url": "https://www.uniprot.org/uniprotkb/B1H234" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B1H234", "url": "https://www.uniprot.org/uniprotkb/B1H234", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LDMSNNNLSNLPQGIFDDLD", "down_seq": "ITQLILRNNPWYCGCKMKWV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn296", "evidence": [ { "id": "B1H234", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/B1H234#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "226", "end_pos": "226" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "296", "end_pos": "296" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "B1H234-1.282.282", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B1H234-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "B1H234-1", "length": 649, "uniprot_id": "FLRT3_RAT", "protein_name": "Leucine-rich repeat transmembrane protein FLRT3", "refseq_ac": "NP_001119763", "refseq_name": "leucine-rich repeat transmembrane protein FLRT3 precursor", "gene_name": "Flrt3", "gene_names_uniprotkb": "Flrt3", "gene_names_refseq": "Flrt3; RGD1566005", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B1H234", "url": "https://www.uniprot.org/uniprotkb/B1H234" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "B1H234", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=B1H234" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B1H234", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=B1H234", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "B1H234", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=B1H234" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "226", "end_pos": "226" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "296", "end_pos": "296" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47819-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P47819-1", "length": 430, "uniprot_id": "GFAP_RAT", "protein_name": "Glial fibrillary acidic protein", "refseq_ac": "NP_058705", "refseq_name": "glial fibrillary acidic protein", "gene_name": "Gfap", "gene_names_uniprotkb": "Gfap", "gene_names_refseq": "Gfap", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P47819", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47819" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47819", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47819", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P47819", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47819" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P47819-1.7.7", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P47819-1.12.12", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47819-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "P47819-1", "length": 430, "uniprot_id": "GFAP_RAT", "protein_name": "Glial fibrillary acidic protein", "refseq_ac": "NP_058705", "refseq_name": "glial fibrillary acidic protein", "gene_name": "Gfap", "gene_names_uniprotkb": "Gfap", "gene_names_refseq": "Gfap", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LEQQNKALAAELNQLRAKEP", "down_seq": "KLADVYQAELRELRLRLDQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "site_lbl": "Thr108" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P47819-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "P47819-1", "length": 430, "uniprot_id": "GFAP_RAT", "protein_name": "Glial fibrillary acidic protein", "refseq_ac": "NP_058705", "refseq_name": "glial fibrillary acidic protein", "gene_name": "Gfap", "gene_names_uniprotkb": "Gfap", "gene_names_refseq": "Gfap", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" }, { "database": "iPTMnet", "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MERRRITSARR", "down_seq": "YASSETMVRGHGPTRHLGTI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819" } ], "site_lbl": "Ser12" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P47819-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P47819-1.7.7", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47819-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "P47819-1", "length": 430, "uniprot_id": "GFAP_RAT", "protein_name": "Glial fibrillary acidic protein", "refseq_ac": "NP_058705", "refseq_name": "glial fibrillary acidic protein", "gene_name": "Gfap", "gene_names_uniprotkb": "Gfap", "gene_names_refseq": "Gfap", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" }, { "database": "iPTMnet", "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LTTNSARLEVERDNLTQDLG", "down_seq": "LRQKLQDETNLRLEAENNLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819" } ], "site_lbl": "Thr148" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47819-1.267.267", "start_pos": 267, "end_pos": 267, "uniprot_canonical_ac": "P47819-1", "length": 430, "uniprot_id": "GFAP_RAT", "protein_name": "Glial fibrillary acidic protein", "refseq_ac": "NP_058705", "refseq_name": "glial fibrillary acidic protein", "gene_name": "Gfap", "gene_names_uniprotkb": "Gfap", "gene_names_refseq": "Gfap", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" }, { "database": "iPTMnet", "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NMQETEEWYRSKFADLTDVA", "down_seq": "RNAELLRQAKHEANDYRRQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819" } ], "site_lbl": "Ser267" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47819-1.321.321", "start_pos": 321, "end_pos": 321, "uniprot_canonical_ac": "P47819-1", "length": 430, "uniprot_id": "GFAP_RAT", "protein_name": "Glial fibrillary acidic protein", "refseq_ac": "NP_058705", "refseq_name": "glial fibrillary acidic protein", "gene_name": "Gfap", "gene_names_uniprotkb": "Gfap", "gene_names_refseq": "Gfap", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" }, { "database": "iPTMnet", "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NESLERQMREQEERHARESA", "down_seq": "YQEALARLEEEGQSLKEEMA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819" } ], "site_lbl": "Ser321" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47819-1.36.36", "start_pos": 36, "end_pos": 36, "uniprot_canonical_ac": "P47819-1", "length": 430, "uniprot_id": "GFAP_RAT", "protein_name": "Glial fibrillary acidic protein", "refseq_ac": "NP_058705", "refseq_name": "glial fibrillary acidic protein", "gene_name": "Gfap", "gene_names_uniprotkb": "Gfap", "gene_names_refseq": "Gfap", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SETMVRGHGPTRHLGTIPRL", "down_seq": "LSRMTPPLPARVDFSLAGAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by AURKB and ROCK1", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "site_lbl": "Ser36" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P47819-1.41.41", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P47819-1.381.381", "start_pos": 381, "end_pos": 381, "uniprot_canonical_ac": "P47819-1", "length": 430, "uniprot_id": "GFAP_RAT", "protein_name": "Glial fibrillary acidic protein", "refseq_ac": "NP_058705", "refseq_name": "glial fibrillary acidic protein", "gene_name": "Gfap", "gene_names_uniprotkb": "Gfap", "gene_names_refseq": "Gfap", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IATYRKLLEGEENRITIPVQ", "down_seq": "FSNLQIRETSLDTKSVSEGH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "site_lbl": "Thr381" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P47819-1.383.383", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P47819-1.383.383", "start_pos": 383, "end_pos": 383, "uniprot_canonical_ac": "P47819-1", "length": 430, "uniprot_id": "GFAP_RAT", "protein_name": "Glial fibrillary acidic protein", "refseq_ac": "NP_058705", "refseq_name": "glial fibrillary acidic protein", "gene_name": "Gfap", "gene_names_uniprotkb": "Gfap", "gene_names_refseq": "Gfap", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" }, { "database": "iPTMnet", "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TYRKLLEGEENRITIPVQTF", "down_seq": "NLQIRETSLDTKSVSEGHLK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819" } ], "site_lbl": "Ser383" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P47819-1.381.381", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47819-1.41.41", "start_pos": 41, "end_pos": 41, "uniprot_canonical_ac": "P47819-1", "length": 430, "uniprot_id": "GFAP_RAT", "protein_name": "Glial fibrillary acidic protein", "refseq_ac": "NP_058705", "refseq_name": "glial fibrillary acidic protein", "gene_name": "Gfap", "gene_names_uniprotkb": "Gfap", "gene_names_refseq": "Gfap", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RGHGPTRHLGTIPRLSLSRM", "down_seq": "PPLPARVDFSLAGALNAGFK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "site_lbl": "Thr41" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P47819-1.36.36", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P47819-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "P47819-1", "length": 430, "uniprot_id": "GFAP_RAT", "protein_name": "Glial fibrillary acidic protein", "refseq_ac": "NP_058705", "refseq_name": "glial fibrillary acidic protein", "gene_name": "Gfap", "gene_names_uniprotkb": "Gfap", "gene_names_refseq": "Gfap", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MERRRI", "down_seq": "SARRSYASSETMVRGHGPTR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by AURKB and ROCK1", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "site_lbl": "Thr7" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P47819-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P47819-1.12.12", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P47819-1.80.80", "start_pos": 80, "end_pos": 80, "uniprot_canonical_ac": "P47819-1", "length": 430, "uniprot_id": "GFAP_RAT", "protein_name": "Glial fibrillary acidic protein", "refseq_ac": "NP_058705", "refseq_name": "glial fibrillary acidic protein", "gene_name": "Gfap", "gene_names_uniprotkb": "Gfap", "gene_names_refseq": "Gfap", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" }, { "database": "iPTMnet", "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FKETRASERAEMMELNDRFA", "down_seq": "YIEKVRFLEQQNKALAAELN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47819", "url": "https://www.uniprot.org/uniprotkb/P47819" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P47819", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47819" } ], "site_lbl": "Ser80" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P23576-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "P23576-1", "length": 451, "uniprot_id": "GBRA2_RAT", "protein_name": "Gamma-aminobutyric acid receptor subunit alpha-2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gabra2", "gene_names_uniprotkb": "Gabra2; Gabra-2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23576", "url": "https://www.uniprot.org/uniprotkb/P23576" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P23576", "url": "https://www.uniprot.org/uniprotkb/P23576", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RQKWKDERLKFKGPMNILRL", "down_seq": "NSMASKIWTPDTFFHNGKKS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn114", "evidence": [ { "id": "P23576", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P23576#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "38", "end_pos": "38" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P23576-1.138.138", "start_pos": 138, "end_pos": 138, "uniprot_canonical_ac": "P23576-1", "length": 451, "uniprot_id": "GBRA2_RAT", "protein_name": "Gamma-aminobutyric acid receptor subunit alpha-2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gabra2", "gene_names_uniprotkb": "Gabra2; Gabra-2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23576", "url": "https://www.uniprot.org/uniprotkb/P23576" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "P23576", "url": "https://www.uniprot.org/uniprotkb/P23576", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ASKIWTPDTFFHNGKKSVAH", "down_seq": "MTMPNKLLRIQDDGTLLYTM", "glycosylation": [ { "glytoucan_ac": "G02815KT", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G09775CH", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "ASN-138 ; ASN-138", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G14548ZL", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-138", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G31852PQ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G37135JQ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-138", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G41247ZX", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G55220VL", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "ASN-138 ; ASN-138", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G60230HH", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-138", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G62765YT", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G80920RR", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G80966KZ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-138", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "P23576", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P23576#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "38", "end_pos": "38" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 12 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 11 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 11 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 11 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 11 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 11 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P23576-1.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "P23576-1", "length": 451, "uniprot_id": "GBRA2_RAT", "protein_name": "Gamma-aminobutyric acid receptor subunit alpha-2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gabra2", "gene_names_uniprotkb": "Gabra2; Gabra-2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23576", "url": "https://www.uniprot.org/uniprotkb/P23576" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P23576", "url": "https://www.uniprot.org/uniprotkb/P23576", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LVWNPARLVLANIQEDEAKN", "down_seq": "ITIFTRILDRLLDGYDNRLR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn38", "evidence": [ { "id": "P23576", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P23576#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "38", "end_pos": "38" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P23576-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P23576-1", "length": 451, "uniprot_id": "GBRA2_RAT", "protein_name": "Gamma-aminobutyric acid receptor subunit alpha-2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gabra2", "gene_names_uniprotkb": "Gabra2; Gabra-2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23576", "url": "https://www.uniprot.org/uniprotkb/P23576" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P23576", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P23576" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P23576", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P23576", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P23576", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P23576" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "38", "end_pos": "38" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70244-1.1168.1168", "start_pos": 1168, "end_pos": 1168, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ALTAKGFSAYWDGSSTGCGG", "down_seq": "LTTPTGVLTSPNYPMPYYHS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1168", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.1285.1285", "start_pos": 1285, "end_pos": 1285, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QQGRGFEINFRQRCDNVVIV", "down_seq": "KTSGILESINYPNPYDKNQR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1285", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.1307.1307", "start_pos": 1307, "end_pos": 1307, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TSGILESINYPNPYDKNQRC", "down_seq": "WTIQATTGNTVNYTFLGFDV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1307", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "O70244-1.1319.1319", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.1319.1319", "start_pos": 1319, "end_pos": 1319, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PYDKNQRCNWTIQATTGNTV", "down_seq": "YTFLGFDVESYMNCSTDYVE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1319", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O70244-1.1307.1307", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O70244-1.1332.1332", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.1332.1332", "start_pos": 1332, "end_pos": 1332, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ATTGNTVNYTFLGFDVESYM", "down_seq": "CSTDYVELYDGPQWMGRYCG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1332", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O70244-1.1319.1319", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.1500.1500", "start_pos": 1500, "end_pos": 1500, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TGNELAIRFKTDSTLNGRGF", "down_seq": "ASWRAVPGGCGGIIQLSRGE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1500", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.1551.1551", "start_pos": 1551, "end_pos": 1551, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RANTECSWIIQVERHHRVLL", "down_seq": "ITDFDLEAPDSCLRLMDGSS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1551", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.1646.1646", "start_pos": 1646, "end_pos": 1646, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TDSSDTIFSPLYPHNYLHNQ", "down_seq": "CSWIIEAQPPFNHITLSFTH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1646", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.1671.1671", "start_pos": 1671, "end_pos": 1671, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IEAQPPFNHITLSFTHFQLQ", "down_seq": "STDCTRDFVEILDGNDYDAP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1671", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.1802.1802", "start_pos": 1802, "end_pos": 1802, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SFNLENSLNCNKDFVEIREG", "down_seq": "ATGHLIGRYCGNSLPGNYSS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1802", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "O70244-1.1819.1819", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.1819.1819", "start_pos": 1819, "end_pos": 1819, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "REGNATGHLIGRYCGNSLPG", "down_seq": "YSSAEGHSLWVRFVSDGSGT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1819", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O70244-1.1802.1802", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.2085.2085", "start_pos": 2085, "end_pos": 2085, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TGEYMYIRFTSDTSVAGTGF", "down_seq": "ASFHKSCGGYLHADRGVITS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2085", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.2117.2117", "start_pos": 2117, "end_pos": 2117, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HADRGVITSPKYPDTYLPNL", "down_seq": "CSWHVLVQTGLTIAVHFEQP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2117", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.2274.2274", "start_pos": 2274, "end_pos": 2274, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PPGRSIQLQFEDQFNIEDTP", "down_seq": "CSVSYLELRDGANSNARLVS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2274", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.2400.2400", "start_pos": 2400, "end_pos": 2400, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EDFNLQSSPGCTKDFVEIWE", "down_seq": "HTSGRVLGRYCGNSTPSSVD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2400", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.2531.2531", "start_pos": 2531, "end_pos": 2531, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IVFNGIRSNSPLLQKLCSRV", "down_seq": "VTNEFKSSGNTMKVVFFTDG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2531", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.2581.2581", "start_pos": 2581, "end_pos": 2581, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SYTSTEDAVCGGFLPSVSGG", "down_seq": "FSSPGYNGIRDYARNLDCEW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2581", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.2610.2610", "start_pos": 2610, "end_pos": 2610, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IRDYARNLDCEWTLSNPNRE", "down_seq": "SSISIYFLELSIESHQDCTF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2610", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.2813.2813", "start_pos": 2813, "end_pos": 2813, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GFYATWTTNALGCGGTFHSA", "down_seq": "GTIKSPHWPQTFPENSRCSW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2813", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.2875.2875", "start_pos": 2875, "end_pos": 2875, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSDSQCQNSFVKVWEGRLMI", "down_seq": "KTLLATSCGDVAPSPIVTSG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2875", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.2945.2945", "start_pos": 2945, "end_pos": 2945, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NTSPGDIISPNFPKQYDNNM", "down_seq": "CTYLIDADPQSLVILTFVSF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2945", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.2989.2989", "start_pos": 2989, "end_pos": 2989, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DRSAITGTCDHDGLHIIKGR", "down_seq": "LSSTPLVTICGSETLRPLTV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2989", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "O70244-1.3008.3008", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.3036.3036", "start_pos": 3036, "end_pos": 3036, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NFYSDAYTTDFGFKISYRAI", "down_seq": "CGGIYNESSGILRSPSYSYS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3036", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "O70244-1.3042.3042", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.3042.3042", "start_pos": 3042, "end_pos": 3042, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YTTDFGFKISYRAITCGGIY", "down_seq": "ESSGILRSPSYSYSNYPNNL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3042", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O70244-1.3036.3036", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.3106.3106", "start_pos": 3106, "end_pos": 3106, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "APSNLCAHDFLEVFDGPSIG", "down_seq": "RSLGKFCGSTRPQTVKSTNS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3106", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "O70244-1.3125.3125", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.3125.3125", "start_pos": 3125, "end_pos": 3125, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GNRSLGKFCGSTRPQTVKST", "down_seq": "SSLTLLFKTDSSQTARGWKI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3125", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O70244-1.3106.3106", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.3165.3165", "start_pos": 3165, "end_pos": 3165, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IFFRETIGPQQGCGGYLTED", "down_seq": "QSFVSPDSDSNGRYDKGLSC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3165", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.3268.3268", "start_pos": 3268, "end_pos": 3268, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SGNFLTFQFVSDVTVEMRGF", "down_seq": "ATYTFVDMPCGGTYNATSTP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3268", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "O70244-1.3283.3283", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.3283.3283", "start_pos": 3283, "end_pos": 3283, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EMRGFNATYTFVDMPCGGTY", "down_seq": "ATSTPQNASSPHLSNIGRPY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3283", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O70244-1.3268.3268", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O70244-1.3290.3290", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.3290.3290", "start_pos": 3290, "end_pos": 3290, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TYTFVDMPCGGTYNATSTPQ", "down_seq": "ASSPHLSNIGRPYSTCTWVI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3290", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O70244-1.3283.3283", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.3357.3357", "start_pos": 3357, "end_pos": 3357, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LELQDSVQTGGNRVTQFCGA", "down_seq": "YTTLPVFYSSMSTAVVVFKS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3357", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.3400.3400", "start_pos": 3400, "end_pos": 3400, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LNRNSQVQFSYQIADCNREY", "down_seq": "QTFGNLKSPGWPQNYDNNLD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3400", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.3430.3430", "start_pos": 3430, "end_pos": 3430, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GWPQNYDNNLDCTIILRAPQ", "down_seq": "HSISLFFYWFQLEDSRQCMN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3430", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.3533.3533", "start_pos": 3533, "end_pos": 3533, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GTLLGDEGIFTNPGFPDSYP", "down_seq": "NTHCEWTIVAPSGRPVSVGF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3533", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.428.428", "start_pos": 428, "end_pos": 428, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QCIETVSSYFCKCDSGWSGQ", "down_seq": "CTENINDCSSNPCLNGGTCI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn428", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.491.491", "start_pos": 491, "end_pos": 491, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QAACGGILSGTQGTFAYHSP", "down_seq": "DTYIHNVNCFWIVRTDEEKV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn491", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.711.711", "start_pos": 711, "end_pos": 711, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells.", "journal": "Scientific reports", "date": "2018", "authors": "Udagawa T, Harita Y, Miura K, Mitsui J, Ode KL, Morishita S, Urae S, Kanda S, Kajiho Y, Tsurumi H, Ueda HR, Tsuji S, Saito A, Oka A", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "reference": [ { "type": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SDKGFHITYLTTQSDLDCGG", "down_seq": "YTDTDGELLLPPLSGPFSHS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn711", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "id": "29402915", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "D", "comment": "Impaired glycosylation and loss of export to the cell surface; when associated with D-749; D-781 and D-857.", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag", "mutagenesis_flag" ], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70244-1.749.749", "start_pos": 749, "end_pos": 749, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells.", "journal": "Scientific reports", "date": "2018", "authors": "Udagawa T, Harita Y, Miura K, Mitsui J, Ode KL, Morishita S, Urae S, Kanda S, Kajiho Y, Tsurumi H, Ueda HR, Tsuji S, Saito A, Oka A", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "reference": [ { "type": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SHSRQCVYLITQAQGEQIVI", "down_seq": "FTHVELESQMGCSHTYIEVG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn749", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "id": "29402915", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "D", "comment": "Impaired glycosylation and loss of export to the cell surface; when associated with D-711; D-781 and D-857.", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag", "mutagenesis_flag" ], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70244-1.781.781", "start_pos": 781, "end_pos": 781, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells.", "journal": "Scientific reports", "date": "2018", "authors": "Udagawa T, Harita Y, Miura K, Mitsui J, Ode KL, Morishita S, Urae S, Kanda S, Kajiho Y, Tsurumi H, Ueda HR, Tsuji S, Saito A, Oka A", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "reference": [ { "type": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "CSHTYIEVGDHDSLLRKICG", "down_seq": "ETLFPIRSVSNKVWIRLRID", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn781", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "id": "29402915", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "D", "comment": "Impaired glycosylation and loss of export to the cell surface; when associated with D-711; D-749 and D-857.", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag", "mutagenesis_flag" ], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70244-1.857.857", "start_pos": 857, "end_pos": 857, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells.", "journal": "Scientific reports", "date": "2018", "authors": "Udagawa T, Harita Y, Miura K, Mitsui J, Ode KL, Morishita S, Urae S, Kanda S, Kajiho Y, Tsurumi H, Ueda HR, Tsuji S, Saito A, Oka A", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "reference": [ { "type": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PGRRTCRWTISQPQRQVVLL", "down_seq": "FTDFQIGSSASCDTDYIEIG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn857", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "id": "29402915", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "D", "comment": "Impaired glycosylation and loss of export to the cell surface; when associated with D-711; D-749 and D-781.", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag", "mutagenesis_flag" ], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "O70244-1.865.865", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70244-1.957.957", "start_pos": 957, "end_pos": 957, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TASTGIIESPGHPNVYPRGV", "down_seq": "CTWHVVVQRGQLIRLEFSSF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn957", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.95.95", "start_pos": 95, "end_pos": 95, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LGECLHQIQRNKDDIIDLRK", "down_seq": "TTGLPQNILSQVHQLNSKLV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn95", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.984.984", "start_pos": 984, "end_pos": 984, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VQRGQLIRLEFSSFYLEFHY", "down_seq": "CTNDYLEIYDTAAQTFLGRY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn984", "evidence": [ { "id": "O70244", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70244-1.142.142", "start_pos": 142, "end_pos": 142, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells.", "journal": "Scientific reports", "date": "2018", "authors": "Udagawa T, Harita Y, Miura K, Mitsui J, Ode KL, Morishita S, Urae S, Kanda S, Kajiho Y, Tsurumi H, Ueda HR, Tsuji S, Saito A, Oka A", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "reference": [ { "type": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "QNLQQNVERKVCSSNPCLNG", "down_seq": "TCVNLHDSFVCICPSQWKGL", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "No effect on trafficking to the cell surface.", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70244-1.222.222", "start_pos": 222, "end_pos": 222, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells.", "journal": "Scientific reports", "date": "2018", "authors": "Udagawa T, Harita Y, Miura K, Mitsui J, Ode KL, Morishita S, Urae S, Kanda S, Kajiho Y, Tsurumi H, Ueda HR, Tsuji S, Saito A, Oka A", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "reference": [ { "type": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "TYGPQCASKYNDCEQGSKQL", "down_seq": "KHGICEDLQRVHHGQPNFHC", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Decreased AMN-dependent trafficking to the cell surface.", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70244-1.334.334", "start_pos": 334, "end_pos": 334, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells.", "journal": "Scientific reports", "date": "2018", "authors": "Udagawa T, Harita Y, Miura K, Mitsui J, Ode KL, Morishita S, Urae S, Kanda S, Kajiho Y, Tsurumi H, Ueda HR, Tsuji S, Saito A, Oka A", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "reference": [ { "type": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "SQAPLVPCLNTPGSFSCGNC", "down_seq": "AGFSGDGRVCTPVDICSIHN", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "L", "comment": "No effect on trafficking to the cell surface.", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70244-1.651.651", "start_pos": 651, "end_pos": 651, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells.", "journal": "Scientific reports", "date": "2018", "authors": "Udagawa T, Harita Y, Miura K, Mitsui J, Ode KL, Morishita S, Urae S, Kanda S, Kajiho Y, Tsurumi H, Ueda HR, Tsuji S, Saito A, Oka A", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "reference": [ { "type": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "TFGTLSLESHNDCSKDYLEI", "down_seq": "DGPFHQDPVLGKFCTSLSTP", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "G", "comment": "No effect on trafficking to the cell surface.", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O70244-1.653.653", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70244-1.653.653", "start_pos": 653, "end_pos": 653, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells.", "journal": "Scientific reports", "date": "2018", "authors": "Udagawa T, Harita Y, Miura K, Mitsui J, Ode KL, Morishita S, Urae S, Kanda S, Kajiho Y, Tsurumi H, Ueda HR, Tsuji S, Saito A, Oka A", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "reference": [ { "type": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "GTLSLESHNDCSKDYLEIRD", "down_seq": "PFHQDPVLGKFCTSLSTPPL", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "No effect on trafficking to the cell surface.", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] }, { "sequence_org": "G", "sequence_mut": "R", "comment": "Decreased AMN-dependent trafficking to the cell surface.", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] }, { "sequence_org": "G", "sequence_mut": "S", "comment": "No effect on trafficking to the cell surface.", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O70244-1.651.651", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70244-1.829.829", "start_pos": 829, "end_pos": 829, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells.", "journal": "Scientific reports", "date": "2018", "authors": "Udagawa T, Harita Y, Miura K, Mitsui J, Ode KL, Morishita S, Urae S, Kanda S, Kajiho Y, Tsurumi H, Ueda HR, Tsuji S, Saito A, Oka A", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "reference": [ { "type": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FRADYQVACGGMLRGEGFFR", "down_seq": "PFYPNAYPGRRTCRWTISQP", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "L", "comment": "Decreased AMN-dependent trafficking to the cell surface.", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70244-1.865.865", "start_pos": 865, "end_pos": 865, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells.", "journal": "Scientific reports", "date": "2018", "authors": "Udagawa T, Harita Y, Miura K, Mitsui J, Ode KL, Morishita S, Urae S, Kanda S, Kajiho Y, Tsurumi H, Ueda HR, Tsuji S, Saito A, Oka A", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244#ptm_processing" }, { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "reference": [ { "type": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TISQPQRQVVLLNFTDFQIG", "down_seq": "SASCDTDYIEIGPSSVLGSP", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "N", "comment": "No effect on trafficking to the cell surface.", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "29402915", "url": "https://glygen.org/publication/PubMed/29402915" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O70244-1.857.857", "categories": [ "glycosylation_flag", "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70244-1.3008.3008", "start_pos": 3008, "end_pos": 3008, "uniprot_canonical_ac": "O70244-1", "length": 3623, "uniprot_id": "CUBN_RAT", "protein_name": "Cubilin", "refseq_ac": "NP_445784", "refseq_name": "cubilin precursor", "gene_name": "Cubn", "gene_names_uniprotkb": "Cubn; Ifcr", "gene_names_refseq": "Cubn; GP280; IFCR; MGA1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "iPTMnet", "id": "O70244", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70244" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O70244", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70244", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RNLSSTPLVTICGSETLRPL", "down_seq": "VDGPVLLNFYSDAYTTDFGF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O70244", "url": "https://www.uniprot.org/uniprotkb/O70244" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "O70244", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70244" } ], "site_lbl": "Thr3008" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1285", "end_pos": "1285" }, { "start_pos": "1307", "end_pos": "1307" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1500", "end_pos": "1500" }, { "start_pos": "1551", "end_pos": "1551" }, { "start_pos": "1646", "end_pos": "1646" }, { "start_pos": "1671", "end_pos": "1671" }, { "start_pos": "1802", "end_pos": "1802" }, { "start_pos": "1819", "end_pos": "1819" }, { "start_pos": "2085", "end_pos": "2085" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2274", "end_pos": "2274" }, { "start_pos": "2400", "end_pos": "2400" }, { "start_pos": "2531", "end_pos": "2531" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2610", "end_pos": "2610" }, { "start_pos": "2813", "end_pos": "2813" }, { "start_pos": "2875", "end_pos": "2875" }, { "start_pos": "2945", "end_pos": "2945" }, { "start_pos": "2989", "end_pos": "2989" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3042", "end_pos": "3042" }, { "start_pos": "3106", "end_pos": "3106" }, { "start_pos": "3125", "end_pos": "3125" }, { "start_pos": "3165", "end_pos": "3165" }, { "start_pos": "3268", "end_pos": "3268" }, { "start_pos": "3283", "end_pos": "3283" }, { "start_pos": "3290", "end_pos": "3290" }, { "start_pos": "3357", "end_pos": "3357" }, { "start_pos": "3400", "end_pos": "3400" }, { "start_pos": "3430", "end_pos": "3430" }, { "start_pos": "3533", "end_pos": "3533" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "95", "end_pos": "95" }, { "start_pos": "984", "end_pos": "984" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "711", "end_pos": "711" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "781", "end_pos": "781" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "857", "end_pos": "857" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3008", "end_pos": "3008" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O70244-1.2989.2989", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P23562-1.658.658", "start_pos": 658, "end_pos": 658, "uniprot_canonical_ac": "P23562-1", "length": 927, "uniprot_id": "B3AT_RAT", "protein_name": "Band 3 anion transport protein", "refseq_ac": "NP_036783", "refseq_name": "band 3 anion transport protein", "gene_name": "Slc4a1", "gene_names_uniprotkb": "Slc4a1; Ae1", "gene_names_refseq": "Slc4a1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TFIKNTYTQKLSVPDGLKVS", "down_seq": "SSARGWVIHPLGLYNHFPKW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn658", "evidence": [ { "id": "P23562", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P23562#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "658", "end_pos": "658" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P23562-1.18.18", "start_pos": 18, "end_pos": 18, "uniprot_canonical_ac": "P23562-1", "length": 927, "uniprot_id": "B3AT_RAT", "protein_name": "Band 3 anion transport protein", "refseq_ac": "NP_036783", "refseq_name": "band 3 anion transport protein", "gene_name": "Slc4a1", "gene_names_uniprotkb": "Slc4a1; Ae1", "gene_names_refseq": "Slc4a1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" }, { "database": "iPTMnet", "id": "P23562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23562" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P23562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23562", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGDMQDHEKVLEIPDRD", "down_seq": "EEELEHVIEQIAYRDLDIPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P23562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23562" } ], "site_lbl": "Ser18" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "658", "end_pos": "658" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "P23562-1.31.31", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P23562-1.199.199", "start_pos": 199, "end_pos": 199, "uniprot_canonical_ac": "P23562-1", "length": 927, "uniprot_id": "B3AT_RAT", "protein_name": "Band 3 anion transport protein", "refseq_ac": "NP_036783", "refseq_name": "band 3 anion transport protein", "gene_name": "Slc4a1", "gene_names_uniprotkb": "Slc4a1; Ae1", "gene_names_refseq": "Slc4a1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" }, { "database": "iPTMnet", "id": "P23562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23562" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P23562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23562", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDLKDLEGVKPAVLTRSGAP", "down_seq": "EPLLPHQPSLETKLYCAQAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P23562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23562" } ], "site_lbl": "Ser199" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "658", "end_pos": "658" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P23562-1.222.222", "start_pos": 222, "end_pos": 222, "uniprot_canonical_ac": "P23562-1", "length": 927, "uniprot_id": "B3AT_RAT", "protein_name": "Band 3 anion transport protein", "refseq_ac": "NP_036783", "refseq_name": "band 3 anion transport protein", "gene_name": "Slc4a1", "gene_names_uniprotkb": "Slc4a1; Ae1", "gene_names_refseq": "Slc4a1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" }, { "database": "iPTMnet", "id": "P23562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23562" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P23562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23562", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLPHQPSLETKLYCAQAEGG", "down_seq": "EEPSPSGILKIPPNSETTLV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P23562", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23562" } ], "site_lbl": "Ser222" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "658", "end_pos": "658" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P23562-1.31.31", "start_pos": 31, "end_pos": 31, "uniprot_canonical_ac": "P23562-1", "length": 927, "uniprot_id": "B3AT_RAT", "protein_name": "Band 3 anion transport protein", "refseq_ac": "NP_036783", "refseq_name": "band 3 anion transport protein", "gene_name": "Slc4a1", "gene_names_uniprotkb": "Slc4a1; Ae1", "gene_names_refseq": "Slc4a1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LEIPDRDSEEELEHVIEQIA", "down_seq": "RDLDIPVTEMQESEALPTEQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" } ], "site_lbl": "Tyr31" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "658", "end_pos": "658" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P23562-1.18.18", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P23562-1.372.372", "start_pos": 372, "end_pos": 372, "uniprot_canonical_ac": "P23562-1", "length": 927, "uniprot_id": "B3AT_RAT", "protein_name": "Band 3 anion transport protein", "refseq_ac": "NP_036783", "refseq_name": "band 3 anion transport protein", "gene_name": "Slc4a1", "gene_names_uniprotkb": "Slc4a1; Ae1", "gene_names_refseq": "Slc4a1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "QKELLRKRYLPRPAKPDPNL", "down_seq": "EALDGGKEGPGDEDDPLRRT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" } ], "site_lbl": "Tyr372" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "658", "end_pos": "658" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P23562-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "P23562-1", "length": 927, "uniprot_id": "B3AT_RAT", "protein_name": "Band 3 anion transport protein", "refseq_ac": "NP_036783", "refseq_name": "band 3 anion transport protein", "gene_name": "Slc4a1", "gene_names_uniprotkb": "Slc4a1; Ae1", "gene_names_refseq": "Slc4a1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "IPVTEMQESEALPTEQTATD", "down_seq": "IPTSTSTSHPSSSQVYVELQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" } ], "site_lbl": "Tyr56" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "658", "end_pos": "658" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P23562-1.920.920", "start_pos": 920, "end_pos": 920, "uniprot_canonical_ac": "P23562-1", "length": 927, "uniprot_id": "B3AT_RAT", "protein_name": "Band 3 anion transport protein", "refseq_ac": "NP_036783", "refseq_name": "band 3 anion transport protein", "gene_name": "Slc4a1", "gene_names_uniprotkb": "Slc4a1; Ae1", "gene_names_refseq": "Slc4a1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "QCLDGDDAKVTFDEAEGLDE", "down_seq": "DEVPMPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P23562", "url": "https://www.uniprot.org/uniprotkb/P23562" } ], "site_lbl": "Tyr920" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "658", "end_pos": "658" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "920", "end_pos": "920" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P07314-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "P07314-1", "length": 568, "uniprot_id": "GGT1_RAT", "protein_name": "Glutathione hydrolase 1 proenzyme", "refseq_ac": "NP_446292", "refseq_name": "glutathione hydrolase 1 proenzyme precursor", "gene_name": "Ggt1", "gene_names_uniprotkb": "Ggt1; Ggt", "gene_names_refseq": "GGLUT; Ggt1; Ggtp; Ggt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NSTTRKAEVINAREMAPRLA", "down_seq": "TSMFNNSKDSEEGGLSVAVP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn114", "evidence": [ { "id": "P07314", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07314#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P07314-1.94.94", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P07314-1.119.119", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P07314-1.119.119", "start_pos": 119, "end_pos": 119, "uniprot_canonical_ac": "P07314-1", "length": 568, "uniprot_id": "GGT1_RAT", "protein_name": "Glutathione hydrolase 1 proenzyme", "refseq_ac": "NP_446292", "refseq_name": "glutathione hydrolase 1 proenzyme precursor", "gene_name": "Ggt1", "gene_names_uniprotkb": "Ggt1; Ggt", "gene_names_refseq": "GGLUT; Ggt1; Ggtp; Ggt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KAEVINAREMAPRLANTSMF", "down_seq": "NSKDSEEGGLSVAVPGEIRG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn119", "evidence": [ { "id": "P07314", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07314#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P07314-1.114.114", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P07314-1.229.229", "start_pos": 229, "end_pos": 229, "uniprot_canonical_ac": "P07314-1", "length": 568, "uniprot_id": "GGT1_RAT", "protein_name": "Glutathione hydrolase 1 proenzyme", "refseq_ac": "NP_446292", "refseq_name": "glutathione hydrolase 1 proenzyme precursor", "gene_name": "Ggt1", "gene_names_uniprotkb": "Ggt1; Ggt", "gene_names_refseq": "GGLUT; Ggt1; Ggtp; Ggt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "MPKLADTLQILAQEGARAFY", "down_seq": "GSLTAQIVKDIQEAGGIMTV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn229", "evidence": [ { "id": "P07314", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07314#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P07314-1.343.343", "start_pos": 343, "end_pos": 343, "uniprot_canonical_ac": "P07314-1", "length": 568, "uniprot_id": "GGT1_RAT", "protein_name": "Glutathione hydrolase 1 proenzyme", "refseq_ac": "NP_446292", "refseq_name": "glutathione hydrolase 1 proenzyme precursor", "gene_name": "Ggt1", "gene_names_uniprotkb": "Ggt1; Ggt", "gene_names_refseq": "GGLUT; Ggt1; Ggtp; Ggt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YAKRTMLGDPKFVDVSQVIR", "down_seq": "MSSEFYATQLRARITDETTH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "P07314", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07314#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P07314-1.427.427", "start_pos": 427, "end_pos": 427, "uniprot_canonical_ac": "P07314-1", "length": 568, "uniprot_id": "GGT1_RAT", "protein_name": "Glutathione hydrolase 1 proenzyme", "refseq_ac": "NP_446292", "refseq_name": "glutathione hydrolase 1 proenzyme precursor", "gene_name": "Ggt1", "gene_names_uniprotkb": "Ggt1; Ggt", "gene_names_refseq": "GGLUT; Ggt1; Ggtp; Ggt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VLSRVSGILFNDEMDDFSSP", "down_seq": "FTNQFGVAPSPANFIKPGKQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn427", "evidence": [ { "id": "P07314", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07314#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P07314-1.510.510", "start_pos": 510, "end_pos": 510, "uniprot_canonical_ac": "P07314-1", "length": 568, "uniprot_id": "GGT1_RAT", "protein_name": "Glutathione hydrolase 1 proenzyme", "refseq_ac": "NP_446292", "refseq_name": "glutathione hydrolase 1 proenzyme precursor", "gene_name": "Ggt1", "gene_names_uniprotkb": "Ggt1; Ggt", "gene_names_refseq": "GGLUT; Ggt1; Ggtp; Ggt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314#ptm_processing" }, { "database": "UniProtKB", "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] }, { "title": "O-linked glycosylation of rat renal gamma-glutamyltranspeptidase adjacent to its membrane anchor domain.", "journal": "The Journal of biological chemistry", "date": "1989", "authors": "Blochberger TC, Sabatine JM, Lee YC, Hughey RP", "evidence": [ { "database": "UniProtKB", "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" }, { "database": "GlyConnect", "id": "170", "url": "https://glyconnect.expasy.org/browser/proteins/170" } ], "reference": [ { "type": "PubMed", "id": "2573604", "url": "https://glygen.org/publication/PubMed/2573604" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "2573604", "url": "https://glygen.org/publication/PubMed/2573604", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FGYDVKRAVEEPRLHNQLLP", "down_seq": "TTTVEKNIDQVVTAGLKTRH", "glycosylation": [ { "glytoucan_ac": "G02815KT", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn510", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G55220VL", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "ASN-510", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn510", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "2573604", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/2573604" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn510", "evidence": [ { "id": "P07314", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07314#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 2 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 2 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P07314-1.94.94", "start_pos": 94, "end_pos": 94, "uniprot_canonical_ac": "P07314-1", "length": 568, "uniprot_id": "GGT1_RAT", "protein_name": "Glutathione hydrolase 1 proenzyme", "refseq_ac": "NP_446292", "refseq_name": "glutathione hydrolase 1 proenzyme precursor", "gene_name": "Ggt1", "gene_names_uniprotkb": "Ggt1; Ggt", "gene_names_refseq": "GGLUT; Ggt1; Ggtp; Ggt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "MGLINAHSMGIGGGLFFTIY", "down_seq": "STTRKAEVINAREMAPRLAN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn94", "evidence": [ { "id": "P07314", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07314#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "P07314-1.114.114", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P07314-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P07314-1", "length": 568, "uniprot_id": "GGT1_RAT", "protein_name": "Glutathione hydrolase 1 proenzyme", "refseq_ac": "NP_446292", "refseq_name": "glutathione hydrolase 1 proenzyme precursor", "gene_name": "Ggt1", "gene_names_uniprotkb": "Ggt1; Ggt", "gene_names_refseq": "GGLUT; Ggt1; Ggtp; Ggt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "O-linked glycosylation of rat renal gamma-glutamyltranspeptidase adjacent to its membrane anchor domain.", "journal": "The Journal of biological chemistry", "date": "1989", "authors": "Blochberger TC, Sabatine JM, Lee YC, Hughey RP", "evidence": [ { "database": "UniProtKB", "id": "P07314", "url": "https://www.uniprot.org/uniprotkb/P07314" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" }, { "database": "GlyConnect", "id": "170", "url": "https://glyconnect.expasy.org/browser/proteins/170" } ], "reference": [ { "type": "PubMed", "id": "2573604", "url": "https://glygen.org/publication/PubMed/2573604" } ] } ], "crossref": [ { "id": "2573604", "url": "https://glygen.org/publication/PubMed/2573604", "database": "PubMed", "categories": [ "Other" ] }, { "id": "170", "url": "https://glyconnect.expasy.org/browser/proteins/170", "database": "GlyConnect", "categories": [ "Glycomics", "Glycoproteomics" ] } ], "glycosylation": [ { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "evidence": [ { "id": "2573604", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/2573604" }, { "id": "170", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/170" } ] }, { "glytoucan_ac": "G29931IJ", "type": "O-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "evidence": [ { "id": "2573604", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/2573604" }, { "id": "170", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/170" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 2 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 2 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70239-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "O70239-1", "length": 827, "uniprot_id": "AXIN1_RAT", "protein_name": "Axin-1", "refseq_ac": "NP_077381", "refseq_name": "axin-1", "gene_name": "Axin1", "gene_names_uniprotkb": "Axin1; Axin", "gene_names_refseq": "Axin1; Axin; axin-1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ATPRRSDLDLGYEPEGSASP", "down_seq": "PPYLRWAESLHSLLDDQDGI", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr79", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O70239-1.75.75", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O70239-1.77.77", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70239-1.217.217", "start_pos": 217, "end_pos": 217, "uniprot_canonical_ac": "O70239-1", "length": 827, "uniprot_id": "AXIN1_RAT", "protein_name": "Axin-1", "refseq_ac": "NP_077381", "refseq_name": "axin-1", "gene_name": "Axin1", "gene_names_uniprotkb": "Axin1; Axin", "gene_names_refseq": "Axin1; Axin; axin-1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TYPSFLKSDIYLEYTRTGSE", "down_seq": "PKVCSDQSSGSGTGKGMSGY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CK1", "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "site_lbl": "Ser217" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70239-1.468.468", "start_pos": 468, "end_pos": 468, "uniprot_canonical_ac": "O70239-1", "length": 827, "uniprot_id": "AXIN1_RAT", "protein_name": "Axin-1", "refseq_ac": "NP_077381", "refseq_name": "axin-1", "gene_name": "Axin1", "gene_names_uniprotkb": "Axin1; Axin", "gene_names_refseq": "Axin1; Axin; axin-1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PRYVDMGCSGLRDAHEENPE", "down_seq": "ILDEHVQRVMRTPGCQSPGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CK1", "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "site_lbl": "Ser468" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "O70239-1.480.480", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O70239-1.485.485", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70239-1.480.480", "start_pos": 480, "end_pos": 480, "uniprot_canonical_ac": "O70239-1", "length": 827, "uniprot_id": "AXIN1_RAT", "protein_name": "Axin-1", "refseq_ac": "NP_077381", "refseq_name": "axin-1", "gene_name": "Axin1", "gene_names_uniprotkb": "Axin1; Axin", "gene_names_refseq": "Axin1; Axin; axin-1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DAHEENPESILDEHVQRVMR", "down_seq": "PGCQSPGPGHRSPDSGHVAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by GSK3-beta", "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "site_lbl": "Thr480" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O70239-1.468.468", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O70239-1.485.485", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O70239-1.492.492", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70239-1.485.485", "start_pos": 485, "end_pos": 485, "uniprot_canonical_ac": "O70239-1", "length": 827, "uniprot_id": "AXIN1_RAT", "protein_name": "Axin-1", "refseq_ac": "NP_077381", "refseq_name": "axin-1", "gene_name": "Axin1", "gene_names_uniprotkb": "Axin1; Axin", "gene_names_refseq": "Axin1; Axin; axin-1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NPESILDEHVQRVMRTPGCQ", "down_seq": "PGPGHRSPDSGHVAKTAVLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GSK3-beta", "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "site_lbl": "Ser485" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O70239-1.468.468", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O70239-1.480.480", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O70239-1.492.492", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70239-1.492.492", "start_pos": 492, "end_pos": 492, "uniprot_canonical_ac": "O70239-1", "length": 827, "uniprot_id": "AXIN1_RAT", "protein_name": "Axin-1", "refseq_ac": "NP_077381", "refseq_name": "axin-1", "gene_name": "Axin1", "gene_names_uniprotkb": "Axin1; Axin", "gene_names_refseq": "Axin1; Axin; axin-1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EHVQRVMRTPGCQSPGPGHR", "down_seq": "PDSGHVAKTAVLGGTASGHG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "site_lbl": "Ser492" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O70239-1.480.480", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O70239-1.485.485", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O70239-1.509.509", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70239-1.509.509", "start_pos": 509, "end_pos": 509, "uniprot_canonical_ac": "O70239-1", "length": 827, "uniprot_id": "AXIN1_RAT", "protein_name": "Axin-1", "refseq_ac": "NP_077381", "refseq_name": "axin-1", "gene_name": "Axin1", "gene_names_uniprotkb": "Axin1; Axin", "gene_names_refseq": "Axin1; Axin; axin-1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GHRSPDSGHVAKTAVLGGTA", "down_seq": "GHGKHAPKLGLKLDSAGLHH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "site_lbl": "Ser509" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O70239-1.492.492", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70239-1.578.578", "start_pos": 578, "end_pos": 578, "uniprot_canonical_ac": "O70239-1", "length": 827, "uniprot_id": "AXIN1_RAT", "protein_name": "Axin-1", "refseq_ac": "NP_077381", "refseq_name": "axin-1", "gene_name": "Axin1", "gene_names_uniprotkb": "Axin1; Axin", "gene_names_refseq": "Axin1; Axin; axin-1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSFSWGPETHGHAKPRSYSE", "down_seq": "TGTNPSAGDLAFGGKASAPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "site_lbl": "Ser578" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70239-1.75.75", "start_pos": 75, "end_pos": 75, "uniprot_canonical_ac": "O70239-1", "length": 827, "uniprot_id": "AXIN1_RAT", "protein_name": "Axin-1", "refseq_ac": "NP_077381", "refseq_name": "axin-1", "gene_name": "Axin1", "gene_names_uniprotkb": "Axin1; Axin", "gene_names_refseq": "Axin1; Axin; axin-1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ETSTATPRRSDLDLGYEPEG", "down_seq": "ASPTPPYLRWAESLHSLLDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CK1", "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "site_lbl": "Ser75" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O70239-1.77.77", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O70239-1.79.79", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70239-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "O70239-1", "length": 827, "uniprot_id": "AXIN1_RAT", "protein_name": "Axin-1", "refseq_ac": "NP_077381", "refseq_name": "axin-1", "gene_name": "Axin1", "gene_names_uniprotkb": "Axin1; Axin", "gene_names_refseq": "Axin1; Axin; axin-1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STATPRRSDLDLGYEPEGSA", "down_seq": "PTPPYLRWAESLHSLLDDQD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CK1", "evidence": [ { "database": "UniProtKB", "id": "O70239", "url": "https://www.uniprot.org/uniprotkb/O70239" } ], "site_lbl": "Ser77" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O70239-1.75.75", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O70239-1.79.79", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P08050-1.368.368", "start_pos": 368, "end_pos": 368, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Protein kinase Cdelta-mediated phosphorylation of Connexin43 gap junction channels causes movement within gap junctions followed by vesicle internalization and protein degradation.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Cone AC, Cavin G, Ambrosi C, Hakozaki H, Wu-Zhang AX, Kunkel MT, Newton AC, Sosinsky GE", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "24500718", "url": "https://glygen.org/publication/PubMed/24500718" } ] }, { "title": "Phosphorylation of connexin43 on serine368 by protein kinase C regulates gap junctional communication.", "journal": "The Journal of cell biology", "date": "2000", "authors": "Lampe PD, TenBroek EM, Burt JM, Kurata WE, Johnson RG, Lau AF", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "10871288", "url": "https://glygen.org/publication/PubMed/10871288" } ] }, { "title": "Identification and functional analysis of novel phosphorylation sites in Cx43 in rat primary granulosa cells.", "journal": "FEBS letters", "date": "2002", "authors": "Yogo K, Ogawa T, Akiyama M, Ishida N, Takeya T", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "12417300", "url": "https://glygen.org/publication/PubMed/12417300" } ] }, { "title": "Cell and toxicant specific phosphorylation of conexin43: effects of lindane and TPA on rat myometrial and WB-F344 liver cell gap junctions.", "journal": "Cell biology and toxicology", "date": "2004", "authors": "Loch-Caruso R, Galvez MM, Brant K, Chung D", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "15250540", "url": "https://glygen.org/publication/PubMed/15250540" } ] }, { "title": "Mechanism of oleic acid-induced gap junctional disassembly in rat cardiomyocytes.", "journal": "Journal of molecular and cellular cardiology", "date": "2004", "authors": "Huang YS, Tseng YZ, Wu JC, Wang SM", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "15350848", "url": "https://glygen.org/publication/PubMed/15350848" } ] }, { "title": "2,2'-Dichlorobiphenyl decreases amplitude and synchronization of uterine contractions through MAPK1-mediated phosphorylation of GJA1 (connexin43) and inhibition of myometrial gap junctions.", "journal": "Biology of reproduction", "date": "2005", "authors": "Chung D, Loch Caruso R", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "16000550", "url": "https://glygen.org/publication/PubMed/16000550" } ] }, { "title": "PKA implicated in the phosphorylation of Cx43 induced by stimulation with FSH in rat granulosa cells.", "journal": "The Journal of reproduction and development", "date": "2006", "authors": "Yogo K, Ogawa T, Akiyama M, Ishida-Kitagawa N, Sasada H, Sato E, Takeya T", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "16474210", "url": "https://glygen.org/publication/PubMed/16474210" } ] }, { "title": "Administration of FGF-2 to the heart stimulates connexin-43 phosphorylation at protein kinase C target sites.", "journal": "Cell communication & adhesion", "date": "2006", "authors": "Srisakuldee W, Nickel BE, Fandrich RR, Jiang ZS, Kardami E", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "16613776", "url": "https://glygen.org/publication/PubMed/16613776" } ] }, { "title": "Identification of ischemia-regulated phosphorylation sites in connexin43: A possible target for the antiarrhythmic peptide analogue rotigaptide (ZP123).", "journal": "Journal of molecular and cellular cardiology", "date": "2006", "authors": "Axelsen LN, Stahlhut M, Mohammed S, Larsen BD, Nielsen MS, Holstein-Rathlou NH, Andersen S, Jensen ON, Hennan JK, Kjolbye AL", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "16678851", "url": "https://glygen.org/publication/PubMed/16678851" } ] }, { "title": "Delta-opioid receptor activation before ischemia reduces gap junction permeability in ischemic myocardium by PKC-epsilon-mediated phosphorylation of connexin 43.", "journal": "American journal of physiology. Heart and circulatory physiology", "date": "2007", "authors": "Miura T, Yano T, Naitoh K, Nishihara M, Miki T, Tanno M, Shimamoto K", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "17513490", "url": "https://glygen.org/publication/PubMed/17513490" } ] }, { "title": "Protein kinase C-gamma activation in the early streptozotocin diabetic rat lens.", "journal": "Current eye research", "date": "2007", "authors": "Lin D, Harris R, Stutzman R, Zampighi GA, Davidson H, Takemoto DJ", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "17612968", "url": "https://glygen.org/publication/PubMed/17612968" } ] }, { "title": "Incidence of protein on actin bridges between endothelium and smooth muscle in arterioles demonstrates heterogeneous connexin expression and phosphorylation.", "journal": "American journal of physiology. Heart and circulatory physiology", "date": "2008", "authors": "Isakson BE, Best AK, Duling BR", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "18408134", "url": "https://glygen.org/publication/PubMed/18408134" } ] }, { "title": "Effects of streptozotocin-induced diabetes on connexin43 mRNA and protein expression in ventricular muscle.", "journal": "Molecular and cellular biochemistry", "date": "2008", "authors": "Howarth FC, Chandler NJ, Kharche S, Tellez JO, Greener ID, Yamanushi TT, Billeter R, Boyett MR, Zhang H, Dobrzynski H", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "18629610", "url": "https://glygen.org/publication/PubMed/18629610" } ] }, { "title": "Effects of 18-glycyrrhetinic acid on serine 368 phosphorylation of connexin43 in rat neonatal cardiomyocytes.", "journal": "Cell biology international", "date": "2008", "authors": "Liang JY, Wang SM, Chung TH, Yang SH, Wu JC", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "18789391", "url": "https://glygen.org/publication/PubMed/18789391" } ] }, { "title": "TGF-beta1 down-regulates connexin 43 expression and gap junction intercellular communication in rat hepatic stellate cells.", "journal": "European journal of cell biology", "date": "2009", "authors": "Lim MC, Maubach G, Zhuo L", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "19781809", "url": "https://glygen.org/publication/PubMed/19781809" } ] }, { "title": "Calcium-induced permeability transition in rat brain mitochondria is promoted by carbenoxolone through targeting connexin43.", "journal": "American journal of physiology. Cell physiology", "date": "2011", "authors": "Azarashvili T, Baburina Y, Grachev D, Krestinina O, Evtodienko Y, Stricker R, Reiser G", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "21148408", "url": "https://glygen.org/publication/PubMed/21148408" } ] }, { "title": "Control of vascular smooth muscle cell growth by connexin 43.", "journal": "Frontiers in physiology", "date": "2012", "authors": "Joshi CN, Martin DN, Shaver P, Madamanchi C, Muller-Borer BJ, Tulis DA", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "22737133", "url": "https://glygen.org/publication/PubMed/22737133" } ] }, { "title": "Effect of hypaconitine combined with liquiritin on the expression of calmodulin and connexin43 in rat cardiac muscle in vivo.", "journal": "The Journal of pharmacy and pharmacology", "date": "2012", "authors": "Yi M, Peng W, Chen X, Wang J, Chen Y", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "23058053", "url": "https://glygen.org/publication/PubMed/23058053" } ] }, { "title": "Roles of 3,4-methylenedioxymethamphetamine (MDMA)-induced alteration of connexin43 and intracellular Ca(2+) oscillation in its cardiotoxicity.", "journal": "Toxicology", "date": "2013", "authors": "Zhuo L, Liu Q, Liu L, Sun TY, Wang RS, Qu GQ, Liu Q, Liu Y, Ren L", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "23747752", "url": "https://glygen.org/publication/PubMed/23747752" } ] }, { "title": "Antiadrenergic effect of adenosine involves connexin 43 turn-over in H9c2 cells.", "journal": "European journal of pharmacology", "date": "2013", "authors": "Popolo A, Morello S, Sorrentino R, Pinto A", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "23834776", "url": "https://glygen.org/publication/PubMed/23834776" } ] }, { "title": "PKCvarepsilon mediates serine phosphorylation of connexin43 induced by lysophosphatidylcholine in neonatal rat cardiomyocytes.", "journal": "Toxicology", "date": "2013", "authors": "Liao CK, Cheng HH, Wang SD, Yeih DF, Wang SM", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "23973256", "url": "https://glygen.org/publication/PubMed/23973256" } ] }, { "title": "Cholesterol modulates function of connexin 43 gap junction channel via PKC pathway in H9c2 cells.", "journal": "Biochimica et biophysica acta", "date": "2014", "authors": "Zou J, Yue XY, Zheng SC, Zhang G, Chang H, Liao YC, Zhang Y, Xue MQ, Qi Z", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "24780378", "url": "https://glygen.org/publication/PubMed/24780378" } ] }, { "title": "S-nitrosation of mitochondrial connexin 43 regulates mitochondrial function.", "journal": "Basic research in cardiology", "date": "2014", "authors": "Soetkamp D, Nguyen TT, Menazza S, Hirschhauser C, Hendgen-Cotta UB, Rassaf T, Schluter KD, Boengler K, Murphy E, Schulz R", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "25115184", "url": "https://glygen.org/publication/PubMed/25115184" } ] }, { "title": "Suppression of PKCepsilon-mediated mitochondrial connexin 43 phosphorylation at serine 368 is involved in myocardial mitochondrial dysfunction in a rat model of dilated cardiomyopathy.", "journal": "Molecular medicine reports", "date": "2015", "authors": "Shan H, Wei J, Zhang M, Lin L, Yan R, Zhang R, Zhu YH", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "25625661", "url": "https://glygen.org/publication/PubMed/25625661" } ] }, { "title": "Up-regulated Cx43 phosphorylation at Ser368 prolongs QRS duration in myocarditis.", "journal": "Journal of cellular and molecular medicine", "date": "2018", "authors": "Zhong C, Chang H, Wu Y, Zhou L, Wang Y, Wang M, Wu P, Qi Z, Zou J", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "29664174", "url": "https://glygen.org/publication/PubMed/29664174" } ] }, { "title": "Anti-arrhythmic Cardiac Phenotype Elicited by Chronic Intermittent Hypoxia Is Associated With Alterations in Connexin-43 Expression, Phosphorylation, and Distribution.", "journal": "Frontiers in endocrinology", "date": "2018", "authors": "Kohutova J, Elsnicova B, Holzerova K, Neckar J, Sebesta O, Jezkova J, Vecka M, Vebr P, Hornikova D, Szeiffova Bacova B, Egan Benova T, Hlavackova M, Tribulova N, Kolar F, Novakova O, Zurmanova JM", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090" } ] }, { "title": "Role of Bcl2-associated Athanogene 3 in Turnover of Gap Junction Protein, Connexin 43, in Neonatal Cardiomyocytes.", "journal": "Scientific reports", "date": "2019", "authors": "Ghasemi Tahrir F, Gupta M, Myers V, Gordon J, Cheung JY, Feldman AM, Khalili K", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "31114002", "url": "https://glygen.org/publication/PubMed/31114002" } ] }, { "title": "Cardiac Cx43 and ECM Responses to Altered Thyroid Status Are Blunted in Spontaneously Hypertensive versus Normotensive Rats.", "journal": "International journal of molecular sciences", "date": "2019", "authors": "Sykora M, Szeiffova Bacova B, Egan Benova T, Barancik M, Zurmanova J, Rauchova H, Weismann P, Pavelka S, Kurahara LH, Slezak J, Soukup T, Tribulova N", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "31374823", "url": "https://glygen.org/publication/PubMed/31374823" } ] }, { "title": "Antiarrhythmic Effects of Melatonin and Omega-3 Are Linked with Protection of Myocardial Cx43 Topology and Suppression of Fibrosis in Catecholamine Stressed Normotensive and Hypertensive Rats.", "journal": "Antioxidants (Basel, Switzerland)", "date": "2020-06-22", "authors": "Szeiffova Bacova Barbara, Viczenczova Csilla, Andelova Katarina, Sykora Matus, Chaudagar Kiranj, Barancik Miroslav, Adamcova Michaela, Knezl Vladimir, Egan Benova Tamara, Weismann Peter, Slezak Jan, Tribulova Narcisa", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "32580481", "url": "https://glygen.org/publication/PubMed/32580481" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24500718", "url": "https://glygen.org/publication/PubMed/24500718", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "10871288", "url": "https://glygen.org/publication/PubMed/10871288", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12417300", "url": "https://glygen.org/publication/PubMed/12417300", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15250540", "url": "https://glygen.org/publication/PubMed/15250540", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15350848", "url": "https://glygen.org/publication/PubMed/15350848", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16000550", "url": "https://glygen.org/publication/PubMed/16000550", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16474210", "url": "https://glygen.org/publication/PubMed/16474210", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16613776", "url": "https://glygen.org/publication/PubMed/16613776", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16678851", "url": "https://glygen.org/publication/PubMed/16678851", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17513490", "url": "https://glygen.org/publication/PubMed/17513490", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17612968", "url": "https://glygen.org/publication/PubMed/17612968", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18408134", "url": "https://glygen.org/publication/PubMed/18408134", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18629610", "url": "https://glygen.org/publication/PubMed/18629610", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18789391", "url": "https://glygen.org/publication/PubMed/18789391", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19781809", "url": "https://glygen.org/publication/PubMed/19781809", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21148408", "url": "https://glygen.org/publication/PubMed/21148408", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22737133", "url": "https://glygen.org/publication/PubMed/22737133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23058053", "url": "https://glygen.org/publication/PubMed/23058053", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23747752", "url": "https://glygen.org/publication/PubMed/23747752", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23834776", "url": "https://glygen.org/publication/PubMed/23834776", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23973256", "url": "https://glygen.org/publication/PubMed/23973256", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24780378", "url": "https://glygen.org/publication/PubMed/24780378", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25115184", "url": "https://glygen.org/publication/PubMed/25115184", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25625661", "url": "https://glygen.org/publication/PubMed/25625661", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29664174", "url": "https://glygen.org/publication/PubMed/29664174", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090", "database": "PubMed", "categories": [ "Other" ] }, { "id": "31114002", "url": "https://glygen.org/publication/PubMed/31114002", "database": "PubMed", "categories": [ "Other" ] }, { "id": "31374823", "url": "https://glygen.org/publication/PubMed/31374823", "database": "PubMed", "categories": [ "Other" ] }, { "id": "32580481", "url": "https://glygen.org/publication/PubMed/32580481", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAGHELQPLAIVDQRPSSRA", "down_seq": "SRASSRPRPDDLEI", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of phosphorylation by PKC/PRKCD.", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "PubMed", "id": "24500718", "url": "https://glygen.org/publication/PubMed/24500718" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "P05696-1", "kinase_gene_name": "Prkca", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "10871288", "url": "https://glygen.org/publication/PubMed/10871288" } ], "site_lbl": "Ser368" }, { "kinase_uniprot_canonical_ac": "P09216-1", "kinase_gene_name": "Prkce", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "10871288", "url": "https://glygen.org/publication/PubMed/10871288" } ], "site_lbl": "Ser368" }, { "kinase_uniprot_canonical_ac": "P63319-1", "kinase_gene_name": "Prkcg", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "10871288", "url": "https://glygen.org/publication/PubMed/10871288" } ], "site_lbl": "Ser368" }, { "kinase_uniprot_canonical_ac": "P68403-1", "kinase_gene_name": "Prkcb", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "10871288", "url": "https://glygen.org/publication/PubMed/10871288" } ], "site_lbl": "Ser368" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC/PRKCG and PKC/PRKCD", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "12417300", "url": "https://glygen.org/publication/PubMed/12417300" }, { "database": "PubMed", "id": "15250540", "url": "https://glygen.org/publication/PubMed/15250540" }, { "database": "PubMed", "id": "15350848", "url": "https://glygen.org/publication/PubMed/15350848" }, { "database": "PubMed", "id": "16000550", "url": "https://glygen.org/publication/PubMed/16000550" }, { "database": "PubMed", "id": "16474210", "url": "https://glygen.org/publication/PubMed/16474210" }, { "database": "PubMed", "id": "16613776", "url": "https://glygen.org/publication/PubMed/16613776" }, { "database": "PubMed", "id": "16678851", "url": "https://glygen.org/publication/PubMed/16678851" }, { "database": "PubMed", "id": "17513490", "url": "https://glygen.org/publication/PubMed/17513490" }, { "database": "PubMed", "id": "17612968", "url": "https://glygen.org/publication/PubMed/17612968" }, { "database": "PubMed", "id": "18408134", "url": "https://glygen.org/publication/PubMed/18408134" }, { "database": "PubMed", "id": "18629610", "url": "https://glygen.org/publication/PubMed/18629610" }, { "database": "PubMed", "id": "18789391", "url": "https://glygen.org/publication/PubMed/18789391" }, { "database": "PubMed", "id": "19781809", "url": "https://glygen.org/publication/PubMed/19781809" }, { "database": "PubMed", "id": "21148408", "url": "https://glygen.org/publication/PubMed/21148408" }, { "database": "PubMed", "id": "22737133", "url": "https://glygen.org/publication/PubMed/22737133" }, { "database": "PubMed", "id": "23058053", "url": "https://glygen.org/publication/PubMed/23058053" }, { "database": "PubMed", "id": "23747752", "url": "https://glygen.org/publication/PubMed/23747752" }, { "database": "PubMed", "id": "23834776", "url": "https://glygen.org/publication/PubMed/23834776" }, { "database": "PubMed", "id": "23973256", "url": "https://glygen.org/publication/PubMed/23973256" }, { "database": "PubMed", "id": "24780378", "url": "https://glygen.org/publication/PubMed/24780378" }, { "database": "PubMed", "id": "25115184", "url": "https://glygen.org/publication/PubMed/25115184" }, { "database": "PubMed", "id": "25625661", "url": "https://glygen.org/publication/PubMed/25625661" }, { "database": "PubMed", "id": "29664174", "url": "https://glygen.org/publication/PubMed/29664174" }, { "database": "PubMed", "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090" }, { "database": "PubMed", "id": "31114002", "url": "https://glygen.org/publication/PubMed/31114002" }, { "database": "PubMed", "id": "31374823", "url": "https://glygen.org/publication/PubMed/31374823" }, { "database": "PubMed", "id": "32580481", "url": "https://glygen.org/publication/PubMed/32580481" }, { "database": "PubMed", "id": "24500718", "url": "https://glygen.org/publication/PubMed/24500718" } ], "site_lbl": "Ser368" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P08050-1.364.364", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P08050-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P08050-1.369.369", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P08050-1.373.373", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 29 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.247.247", "start_pos": 247, "end_pos": 247, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Dissection of the molecular basis of pp60(v-src) induced gating of connexin 43 gap junction channels.", "journal": "The Journal of cell biology", "date": "1999", "authors": "Zhou L, Kasperek EM, Nicholson BJ", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "10085299", "url": "https://glygen.org/publication/PubMed/10085299" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "10085299", "url": "https://glygen.org/publication/PubMed/10085299", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ELFYVFFKGVKDRVKGRSDP", "down_seq": "HATTGPLSPSKDCGSPKYAY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "10085299", "url": "https://glygen.org/publication/PubMed/10085299" } ], "site_lbl": "Tyr247" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "P08050-1.255.255", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P08050-1.257.257", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P08050-1.262.262", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P08050-1.265.265", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.255.255", "start_pos": 255, "end_pos": 255, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "2,2'-Dichlorobiphenyl decreases amplitude and synchronization of uterine contractions through MAPK1-mediated phosphorylation of GJA1 (connexin43) and inhibition of myometrial gap junctions.", "journal": "Biology of reproduction", "date": "2005", "authors": "Chung D, Loch Caruso R", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "16000550", "url": "https://glygen.org/publication/PubMed/16000550" } ] }, { "title": "Control of vascular smooth muscle cell growth by connexin 43.", "journal": "Frontiers in physiology", "date": "2012", "authors": "Joshi CN, Martin DN, Shaver P, Madamanchi C, Muller-Borer BJ, Tulis DA", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "22737133", "url": "https://glygen.org/publication/PubMed/22737133" } ] }, { "title": "MicroRNA-1 downregulation increases connexin 43 displacement and induces ventricular tachyarrhythmias in rodent hypertrophic hearts.", "journal": "PloS one", "date": "2013", "authors": "Curcio A, Torella D, Iaconetti C, Pasceri E, Sabatino J, Sorrentino S, Giampa S, Micieli M, Polimeni A, Henning BJ, Leone A, Catalucci D, Ellison GM, Condorelli G, Indolfi C", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "23922949", "url": "https://glygen.org/publication/PubMed/23922949" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "16000550", "url": "https://glygen.org/publication/PubMed/16000550", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22737133", "url": "https://glygen.org/publication/PubMed/22737133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23922949", "url": "https://glygen.org/publication/PubMed/23922949", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GVKDRVKGRSDPYHATTGPL", "down_seq": "PSKDCGSPKYAYFNGCSSPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "16000550", "url": "https://glygen.org/publication/PubMed/16000550" }, { "database": "PubMed", "id": "22737133", "url": "https://glygen.org/publication/PubMed/22737133" }, { "database": "PubMed", "id": "23922949", "url": "https://glygen.org/publication/PubMed/23922949" } ], "site_lbl": "Ser255" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P08050-1.247.247", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P08050-1.257.257", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P08050-1.262.262", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P08050-1.265.265", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P08050-1.275.275", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.257.257", "start_pos": 257, "end_pos": 257, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KDRVKGRSDPYHATTGPLSP", "down_seq": "KDCGSPKYAYFNGCSSPTAP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "site_lbl": "Ser257" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P08050-1.247.247", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P08050-1.255.255", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P08050-1.262.262", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P08050-1.265.265", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P08050-1.275.275", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.262.262", "start_pos": 262, "end_pos": 262, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Administration of FGF-2 to the heart stimulates connexin-43 phosphorylation at protein kinase C target sites.", "journal": "Cell communication & adhesion", "date": "2006", "authors": "Srisakuldee W, Nickel BE, Fandrich RR, Jiang ZS, Kardami E", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "16613776", "url": "https://glygen.org/publication/PubMed/16613776" } ] }, { "title": "Phosphorylation of connexin-43 at serine 262 promotes a cardiac injury-resistant state.", "journal": "Cardiovascular research", "date": "2009", "authors": "Srisakuldee W, Jeyaraman MM, Nickel BE, Tanguy S, Jiang ZS, Kardami E", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "19423616", "url": "https://glygen.org/publication/PubMed/19423616" } ] }, { "title": "S262A mutation abolishes protective effects of connexin 43 against hypothermic preservation-induced injury in cardiomyocytes.", "journal": "The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation", "date": "2012-06", "authors": "Xu He-jing, Chen Wen-liang, Wang Yang, Zheng Ming-zhi, Chen Ying-ying, Shen Yue-liang", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "22608771", "url": "https://glygen.org/publication/PubMed/22608771" } ] }, { "title": "Control of vascular smooth muscle cell growth by connexin 43.", "journal": "Frontiers in physiology", "date": "2012", "authors": "Joshi CN, Martin DN, Shaver P, Madamanchi C, Muller-Borer BJ, Tulis DA", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "22737133", "url": "https://glygen.org/publication/PubMed/22737133" } ] }, { "title": "MicroRNA-1 downregulation increases connexin 43 displacement and induces ventricular tachyarrhythmias in rodent hypertrophic hearts.", "journal": "PloS one", "date": "2013", "authors": "Curcio A, Torella D, Iaconetti C, Pasceri E, Sabatino J, Sorrentino S, Giampa S, Micieli M, Polimeni A, Henning BJ, Leone A, Catalucci D, Ellison GM, Condorelli G, Indolfi C", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "23922949", "url": "https://glygen.org/publication/PubMed/23922949" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "16613776", "url": "https://glygen.org/publication/PubMed/16613776", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19423616", "url": "https://glygen.org/publication/PubMed/19423616", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22608771", "url": "https://glygen.org/publication/PubMed/22608771", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22737133", "url": "https://glygen.org/publication/PubMed/22737133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23922949", "url": "https://glygen.org/publication/PubMed/23922949", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRSDPYHATTGPLSPSKDCG", "down_seq": "PKYAYFNGCSSPTAPLSPMS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "16613776", "url": "https://glygen.org/publication/PubMed/16613776" }, { "database": "PubMed", "id": "19423616", "url": "https://glygen.org/publication/PubMed/19423616" }, { "database": "PubMed", "id": "22608771", "url": "https://glygen.org/publication/PubMed/22608771" }, { "database": "PubMed", "id": "22737133", "url": "https://glygen.org/publication/PubMed/22737133" }, { "database": "PubMed", "id": "23922949", "url": "https://glygen.org/publication/PubMed/23922949" } ], "site_lbl": "Ser262" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P08050-1.247.247", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P08050-1.255.255", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P08050-1.257.257", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P08050-1.265.265", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P08050-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P08050-1.279.279", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P08050-1.282.282", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.265.265", "start_pos": 265, "end_pos": 265, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Dissection of the molecular basis of pp60(v-src) induced gating of connexin 43 gap junction channels.", "journal": "The Journal of cell biology", "date": "1999", "authors": "Zhou L, Kasperek EM, Nicholson BJ", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "10085299", "url": "https://glygen.org/publication/PubMed/10085299" } ] }, { "title": "Interaction of c-Src with gap junction protein connexin-43. Role in the regulation of cell-cell communication.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Giepmans BN, Hengeveld T, Postma FR, Moolenaar WH", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "11124251", "url": "https://glygen.org/publication/PubMed/11124251" } ] }, { "title": "Anti-arrhythmic Cardiac Phenotype Elicited by Chronic Intermittent Hypoxia Is Associated With Alterations in Connexin-43 Expression, Phosphorylation, and Distribution.", "journal": "Frontiers in endocrinology", "date": "2018", "authors": "Kohutova J, Elsnicova B, Holzerova K, Neckar J, Sebesta O, Jezkova J, Vecka M, Vebr P, Hornikova D, Szeiffova Bacova B, Egan Benova T, Hlavackova M, Tribulova N, Kolar F, Novakova O, Zurmanova JM", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090" } ] } ], "crossref": [ { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "10085299", "url": "https://glygen.org/publication/PubMed/10085299", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11124251", "url": "https://glygen.org/publication/PubMed/11124251", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DPYHATTGPLSPSKDCGSPK", "down_seq": "AYFNGCSSPTAPLSPMSPPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "10085299", "url": "https://glygen.org/publication/PubMed/10085299" }, { "database": "PubMed", "id": "11124251", "url": "https://glygen.org/publication/PubMed/11124251" }, { "database": "PubMed", "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090" } ], "site_lbl": "Tyr265" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P08050-1.247.247", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P08050-1.255.255", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P08050-1.257.257", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P08050-1.262.262", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P08050-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P08050-1.279.279", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P08050-1.282.282", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SPSKDCGSPKYAYFNGCSSP", "down_seq": "APLSPMSPPGYKLVTGDRNN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "site_lbl": "Thr275" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P08050-1.255.255", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "P08050-1.257.257", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P08050-1.262.262", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P08050-1.265.265", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P08050-1.279.279", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P08050-1.282.282", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P08050-1.279.279", "start_pos": 279, "end_pos": 279, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Epidermal growth factor receptor is a common mediator of quinone-induced signaling leading to phosphorylation of connexin-43: role of glutathione and tyrosine phosphatases.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Abdelmohsen K, Gerber PA, von Montfort C, Sies H, Klotz LO", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "12874275", "url": "https://glygen.org/publication/PubMed/12874275" } ] }, { "title": "Control of vascular smooth muscle cell growth by connexin 43.", "journal": "Frontiers in physiology", "date": "2012", "authors": "Joshi CN, Martin DN, Shaver P, Madamanchi C, Muller-Borer BJ, Tulis DA", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "22737133", "url": "https://glygen.org/publication/PubMed/22737133" } ] }, { "title": "MicroRNA-1 downregulation increases connexin 43 displacement and induces ventricular tachyarrhythmias in rodent hypertrophic hearts.", "journal": "PloS one", "date": "2013", "authors": "Curcio A, Torella D, Iaconetti C, Pasceri E, Sabatino J, Sorrentino S, Giampa S, Micieli M, Polimeni A, Henning BJ, Leone A, Catalucci D, Ellison GM, Condorelli G, Indolfi C", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "23922949", "url": "https://glygen.org/publication/PubMed/23922949" } ] }, { "title": "Anti-arrhythmic Cardiac Phenotype Elicited by Chronic Intermittent Hypoxia Is Associated With Alterations in Connexin-43 Expression, Phosphorylation, and Distribution.", "journal": "Frontiers in endocrinology", "date": "2018", "authors": "Kohutova J, Elsnicova B, Holzerova K, Neckar J, Sebesta O, Jezkova J, Vecka M, Vebr P, Hornikova D, Szeiffova Bacova B, Egan Benova T, Hlavackova M, Tribulova N, Kolar F, Novakova O, Zurmanova JM", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "12874275", "url": "https://glygen.org/publication/PubMed/12874275", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22737133", "url": "https://glygen.org/publication/PubMed/22737133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23922949", "url": "https://glygen.org/publication/PubMed/23922949", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DCGSPKYAYFNGCSSPTAPL", "down_seq": "PMSPPGYKLVTGDRNNSSCR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "12874275", "url": "https://glygen.org/publication/PubMed/12874275" }, { "database": "PubMed", "id": "22737133", "url": "https://glygen.org/publication/PubMed/22737133" }, { "database": "PubMed", "id": "23922949", "url": "https://glygen.org/publication/PubMed/23922949" }, { "database": "PubMed", "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090" } ], "site_lbl": "Ser279" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P08050-1.262.262", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P08050-1.265.265", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P08050-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P08050-1.282.282", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P08050-1.297.297", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.282.282", "start_pos": 282, "end_pos": 282, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Epidermal growth factor receptor is a common mediator of quinone-induced signaling leading to phosphorylation of connexin-43: role of glutathione and tyrosine phosphatases.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Abdelmohsen K, Gerber PA, von Montfort C, Sies H, Klotz LO", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "12874275", "url": "https://glygen.org/publication/PubMed/12874275" } ] }, { "title": "MicroRNA-1 downregulation increases connexin 43 displacement and induces ventricular tachyarrhythmias in rodent hypertrophic hearts.", "journal": "PloS one", "date": "2013", "authors": "Curcio A, Torella D, Iaconetti C, Pasceri E, Sabatino J, Sorrentino S, Giampa S, Micieli M, Polimeni A, Henning BJ, Leone A, Catalucci D, Ellison GM, Condorelli G, Indolfi C", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "23922949", "url": "https://glygen.org/publication/PubMed/23922949" } ] }, { "title": "Anti-arrhythmic Cardiac Phenotype Elicited by Chronic Intermittent Hypoxia Is Associated With Alterations in Connexin-43 Expression, Phosphorylation, and Distribution.", "journal": "Frontiers in endocrinology", "date": "2018", "authors": "Kohutova J, Elsnicova B, Holzerova K, Neckar J, Sebesta O, Jezkova J, Vecka M, Vebr P, Hornikova D, Szeiffova Bacova B, Egan Benova T, Hlavackova M, Tribulova N, Kolar F, Novakova O, Zurmanova JM", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "12874275", "url": "https://glygen.org/publication/PubMed/12874275", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23922949", "url": "https://glygen.org/publication/PubMed/23922949", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPKYAYFNGCSSPTAPLSPM", "down_seq": "PPGYKLVTGDRNNSSCRNYN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "12874275", "url": "https://glygen.org/publication/PubMed/12874275" }, { "database": "PubMed", "id": "23922949", "url": "https://glygen.org/publication/PubMed/23922949" }, { "database": "PubMed", "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090" } ], "site_lbl": "Ser282" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P08050-1.262.262", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P08050-1.265.265", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P08050-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P08050-1.279.279", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P08050-1.297.297", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.297.297", "start_pos": 297, "end_pos": 297, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Identification of ischemia-regulated phosphorylation sites in connexin43: A possible target for the antiarrhythmic peptide analogue rotigaptide (ZP123).", "journal": "Journal of molecular and cellular cardiology", "date": "2006", "authors": "Axelsen LN, Stahlhut M, Mohammed S, Larsen BD, Nielsen MS, Holstein-Rathlou NH, Andersen S, Jensen ON, Hennan JK, Kjolbye AL", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "16678851", "url": "https://glygen.org/publication/PubMed/16678851" } ] } ], "crossref": [ { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "16678851", "url": "https://glygen.org/publication/PubMed/16678851", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLSPMSPPGYKLVTGDRNNS", "down_seq": "CRNYNKQASEQNWANYSAEQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "16678851", "url": "https://glygen.org/publication/PubMed/16678851" } ], "site_lbl": "Ser297" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P08050-1.279.279", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P08050-1.282.282", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P08050-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P08050-1.314.314", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.306.306", "start_pos": 306, "end_pos": 306, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YKLVTGDRNNSSCRNYNKQA", "down_seq": "EQNWANYSAEQNRMGQAGST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "site_lbl": "Ser306" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P08050-1.297.297", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P08050-1.314.314", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P08050-1.325.325", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P08050-1.326.326", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.314.314", "start_pos": 314, "end_pos": 314, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NNSSCRNYNKQASEQNWANY", "down_seq": "AEQNRMGQAGSTISNSHAQP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "site_lbl": "Ser314" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P08050-1.297.297", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P08050-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P08050-1.325.325", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P08050-1.326.326", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P08050-1.328.328", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P08050-1.330.330", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.325.325", "start_pos": 325, "end_pos": 325, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Casein kinase 1 regulates connexin-43 gap junction assembly.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Cooper CD, Lampe PD", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "12270943", "url": "https://glygen.org/publication/PubMed/12270943" } ] }, { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] }, { "title": "Remote ischemic preconditioning preserves Connexin 43 phosphorylation in the rat heart in vivo.", "journal": "Journal of translational medicine", "date": "2014", "authors": "Brandenburger T, Huhn R, Galas A, Pannen BH, Keitel V, Barthel F, Bauer I, Heinen A", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "25159820", "url": "https://glygen.org/publication/PubMed/25159820" } ] } ], "crossref": [ { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "12270943", "url": "https://glygen.org/publication/PubMed/12270943", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25159820", "url": "https://glygen.org/publication/PubMed/25159820", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASEQNWANYSAEQNRMGQAG", "down_seq": "TISNSHAQPFDFPDDNQNAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q06486-1", "kinase_gene_name": "Csnk1d", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "12270943", "url": "https://glygen.org/publication/PubMed/12270943" } ], "site_lbl": "Ser325" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "25159820", "url": "https://glygen.org/publication/PubMed/25159820" } ], "site_lbl": "Ser325" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P08050-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P08050-1.314.314", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P08050-1.326.326", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P08050-1.328.328", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P08050-1.330.330", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.326.326", "start_pos": 326, "end_pos": 326, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SEQNWANYSAEQNRMGQAGS", "down_seq": "ISNSHAQPFDFPDDNQNAKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "site_lbl": "Thr326" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P08050-1.306.306", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P08050-1.314.314", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P08050-1.325.325", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P08050-1.328.328", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P08050-1.330.330", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.328.328", "start_pos": 328, "end_pos": 328, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Casein kinase 1 regulates connexin-43 gap junction assembly.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Cooper CD, Lampe PD", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "12270943", "url": "https://glygen.org/publication/PubMed/12270943" } ] }, { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] }, { "title": "Remote ischemic preconditioning preserves Connexin 43 phosphorylation in the rat heart in vivo.", "journal": "Journal of translational medicine", "date": "2014", "authors": "Brandenburger T, Huhn R, Galas A, Pannen BH, Keitel V, Barthel F, Bauer I, Heinen A", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "25159820", "url": "https://glygen.org/publication/PubMed/25159820" } ] } ], "crossref": [ { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "12270943", "url": "https://glygen.org/publication/PubMed/12270943", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25159820", "url": "https://glygen.org/publication/PubMed/25159820", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QNWANYSAEQNRMGQAGSTI", "down_seq": "NSHAQPFDFPDDNQNAKKVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q06486-1", "kinase_gene_name": "Csnk1d", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "12270943", "url": "https://glygen.org/publication/PubMed/12270943" } ], "site_lbl": "Ser328" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "25159820", "url": "https://glygen.org/publication/PubMed/25159820" } ], "site_lbl": "Ser328" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P08050-1.314.314", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P08050-1.325.325", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P08050-1.326.326", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P08050-1.330.330", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.330.330", "start_pos": 330, "end_pos": 330, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Casein kinase 1 regulates connexin-43 gap junction assembly.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Cooper CD, Lampe PD", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "12270943", "url": "https://glygen.org/publication/PubMed/12270943" } ] }, { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] }, { "title": "Identification of ischemia-regulated phosphorylation sites in connexin43: A possible target for the antiarrhythmic peptide analogue rotigaptide (ZP123).", "journal": "Journal of molecular and cellular cardiology", "date": "2006", "authors": "Axelsen LN, Stahlhut M, Mohammed S, Larsen BD, Nielsen MS, Holstein-Rathlou NH, Andersen S, Jensen ON, Hennan JK, Kjolbye AL", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "16678851", "url": "https://glygen.org/publication/PubMed/16678851" } ] }, { "title": "Remote ischemic preconditioning preserves Connexin 43 phosphorylation in the rat heart in vivo.", "journal": "Journal of translational medicine", "date": "2014", "authors": "Brandenburger T, Huhn R, Galas A, Pannen BH, Keitel V, Barthel F, Bauer I, Heinen A", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "25159820", "url": "https://glygen.org/publication/PubMed/25159820" } ] } ], "crossref": [ { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "12270943", "url": "https://glygen.org/publication/PubMed/12270943", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16678851", "url": "https://glygen.org/publication/PubMed/16678851", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25159820", "url": "https://glygen.org/publication/PubMed/25159820", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WANYSAEQNRMGQAGSTISN", "down_seq": "HAQPFDFPDDNQNAKKVAAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q06486-1", "kinase_gene_name": "Csnk1d", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "12270943", "url": "https://glygen.org/publication/PubMed/12270943" } ], "site_lbl": "Ser330" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "16678851", "url": "https://glygen.org/publication/PubMed/16678851" }, { "database": "PubMed", "id": "25159820", "url": "https://glygen.org/publication/PubMed/25159820" } ], "site_lbl": "Ser330" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P08050-1.314.314", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P08050-1.325.325", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P08050-1.326.326", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P08050-1.328.328", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.364.364", "start_pos": 364, "end_pos": 364, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Anti-arrhythmic Cardiac Phenotype Elicited by Chronic Intermittent Hypoxia Is Associated With Alterations in Connexin-43 Expression, Phosphorylation, and Distribution.", "journal": "Frontiers in endocrinology", "date": "2018", "authors": "Kohutova J, Elsnicova B, Holzerova K, Neckar J, Sebesta O, Jezkova J, Vecka M, Vebr P, Hornikova D, Szeiffova Bacova B, Egan Benova T, Hlavackova M, Tribulova N, Kolar F, Novakova O, Zurmanova JM", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090" } ] } ], "crossref": [ { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKKVAAGHELQPLAIVDQRP", "down_seq": "SRASSRASSRPRPDDLEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090" } ], "site_lbl": "Ser364" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P08050-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P08050-1.368.368", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P08050-1.369.369", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P08050-1.373.373", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.365.365", "start_pos": 365, "end_pos": 365, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Identification and functional analysis of novel phosphorylation sites in Cx43 in rat primary granulosa cells.", "journal": "FEBS letters", "date": "2002", "authors": "Yogo K, Ogawa T, Akiyama M, Ishida N, Takeya T", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "12417300", "url": "https://glygen.org/publication/PubMed/12417300" } ] }, { "title": "PKA implicated in the phosphorylation of Cx43 induced by stimulation with FSH in rat granulosa cells.", "journal": "The Journal of reproduction and development", "date": "2006", "authors": "Yogo K, Ogawa T, Akiyama M, Ishida-Kitagawa N, Sasada H, Sato E, Takeya T", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "16474210", "url": "https://glygen.org/publication/PubMed/16474210" } ] }, { "title": "Remote ischemic preconditioning preserves Connexin 43 phosphorylation in the rat heart in vivo.", "journal": "Journal of translational medicine", "date": "2014", "authors": "Brandenburger T, Huhn R, Galas A, Pannen BH, Keitel V, Barthel F, Bauer I, Heinen A", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "25159820", "url": "https://glygen.org/publication/PubMed/25159820" } ] }, { "title": "Anti-arrhythmic Cardiac Phenotype Elicited by Chronic Intermittent Hypoxia Is Associated With Alterations in Connexin-43 Expression, Phosphorylation, and Distribution.", "journal": "Frontiers in endocrinology", "date": "2018", "authors": "Kohutova J, Elsnicova B, Holzerova K, Neckar J, Sebesta O, Jezkova J, Vecka M, Vebr P, Hornikova D, Szeiffova Bacova B, Egan Benova T, Hlavackova M, Tribulova N, Kolar F, Novakova O, Zurmanova JM", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12417300", "url": "https://glygen.org/publication/PubMed/12417300", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "16474210", "url": "https://glygen.org/publication/PubMed/16474210", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25159820", "url": "https://glygen.org/publication/PubMed/25159820", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKVAAGHELQPLAIVDQRPS", "down_seq": "RASSRASSRPRPDDLEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "PubMed", "id": "12417300", "url": "https://glygen.org/publication/PubMed/12417300" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "16474210", "url": "https://glygen.org/publication/PubMed/16474210" }, { "database": "PubMed", "id": "25159820", "url": "https://glygen.org/publication/PubMed/25159820" }, { "database": "PubMed", "id": "30740090", "url": "https://glygen.org/publication/PubMed/30740090" } ], "site_lbl": "Ser365" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P08050-1.364.364", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P08050-1.368.368", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P08050-1.369.369", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P08050-1.373.373", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.369.369", "start_pos": 369, "end_pos": 369, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Identification and functional analysis of novel phosphorylation sites in Cx43 in rat primary granulosa cells.", "journal": "FEBS letters", "date": "2002", "authors": "Yogo K, Ogawa T, Akiyama M, Ishida N, Takeya T", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "12417300", "url": "https://glygen.org/publication/PubMed/12417300" } ] }, { "title": "PKA implicated in the phosphorylation of Cx43 induced by stimulation with FSH in rat granulosa cells.", "journal": "The Journal of reproduction and development", "date": "2006", "authors": "Yogo K, Ogawa T, Akiyama M, Ishida-Kitagawa N, Sasada H, Sato E, Takeya T", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "16474210", "url": "https://glygen.org/publication/PubMed/16474210" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12417300", "url": "https://glygen.org/publication/PubMed/12417300", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "16474210", "url": "https://glygen.org/publication/PubMed/16474210", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGHELQPLAIVDQRPSSRAS", "down_seq": "RASSRPRPDDLEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "PubMed", "id": "12417300", "url": "https://glygen.org/publication/PubMed/12417300" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "16474210", "url": "https://glygen.org/publication/PubMed/16474210" } ], "site_lbl": "Ser369" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P08050-1.364.364", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P08050-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P08050-1.368.368", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P08050-1.373.373", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.373.373", "start_pos": 373, "end_pos": 373, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Identification and functional analysis of novel phosphorylation sites in Cx43 in rat primary granulosa cells.", "journal": "FEBS letters", "date": "2002", "authors": "Yogo K, Ogawa T, Akiyama M, Ishida N, Takeya T", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "12417300", "url": "https://glygen.org/publication/PubMed/12417300" } ] }, { "title": "PKA implicated in the phosphorylation of Cx43 induced by stimulation with FSH in rat granulosa cells.", "journal": "The Journal of reproduction and development", "date": "2006", "authors": "Yogo K, Ogawa T, Akiyama M, Ishida-Kitagawa N, Sasada H, Sato E, Takeya T", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "16474210", "url": "https://glygen.org/publication/PubMed/16474210" } ] }, { "title": "Role of Bcl2-associated Athanogene 3 in Turnover of Gap Junction Protein, Connexin 43, in Neonatal Cardiomyocytes.", "journal": "Scientific reports", "date": "2019", "authors": "Ghasemi Tahrir F, Gupta M, Myers V, Gordon J, Cheung JY, Feldman AM, Khalili K", "evidence": [ { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "31114002", "url": "https://glygen.org/publication/PubMed/31114002" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12417300", "url": "https://glygen.org/publication/PubMed/12417300", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "16474210", "url": "https://glygen.org/publication/PubMed/16474210", "database": "PubMed", "categories": [ "Other" ] }, { "id": "31114002", "url": "https://glygen.org/publication/PubMed/31114002", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LQPLAIVDQRPSSRASSRAS", "down_seq": "RPRPDDLEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "PubMed", "id": "12417300", "url": "https://glygen.org/publication/PubMed/12417300" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" }, { "database": "PubMed", "id": "16474210", "url": "https://glygen.org/publication/PubMed/16474210" }, { "database": "PubMed", "id": "31114002", "url": "https://glygen.org/publication/PubMed/31114002" } ], "site_lbl": "Ser373" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P08050-1.364.364", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P08050-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P08050-1.368.368", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P08050-1.369.369", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08050-1.5.5", "start_pos": 5, "end_pos": 5, "uniprot_canonical_ac": "P08050-1", "length": 382, "uniprot_id": "CXA1_RAT", "protein_name": "Gap junction alpha-1 protein", "refseq_ac": "NP_036699", "refseq_name": "gap junction alpha-1 protein", "gene_name": "Gja1", "gene_names_uniprotkb": "Gja1; Cxn-43", "gene_names_refseq": "Cx43; Cxnk1; Gja1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGDW", "down_seq": "ALGKLLDKVQAYSTAGGKVW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08050", "url": "https://www.uniprot.org/uniprotkb/P08050" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P08050", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08050" } ], "site_lbl": "Ser5" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "368", "end_pos": "368" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "297", "end_pos": "297" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "328", "end_pos": "328" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P16573-1.104.104", "start_pos": 104, "end_pos": 104, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RSDNMSKTGPAYSGRETIYS", "down_seq": "GSLFFQNVNKTDERAYTLSV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn104", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P16573-1.87.87", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P16573-1.113.113", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.113.113", "start_pos": 113, "end_pos": 113, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PAYSGRETIYSNGSLFFQNV", "down_seq": "KTDERAYTLSVFDQQFNPIQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn113", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P16573-1.104.104", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QFNPIQTSVQFRVYPALQKP", "down_seq": "VTGNNSNPMEGEPFVSLMCE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn148", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P16573-1.152.152", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IQTSVQFRVYPALQKPNVTG", "down_seq": "NSNPMEGEPFVSLMCEPYTN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn152", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P16573-1.148.148", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.173.173", "start_pos": 173, "end_pos": 173, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NSNPMEGEPFVSLMCEPYTN", "down_seq": "TSYLWSRNGESLSEGDRVTF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn173", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.197.197", "start_pos": 197, "end_pos": 197, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LWSRNGESLSEGDRVTFSEG", "down_seq": "RTLTLLNVRRTDKGYYECEA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn197", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.224.224", "start_pos": 224, "end_pos": 224, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NVRRTDKGYYECEARNPATF", "down_seq": "RSDPFNLDVIYGPDAPVISP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn224", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.256.256", "start_pos": 256, "end_pos": 256, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GPDAPVISPPDIYLHQGSNL", "down_seq": "LSCHADSNPPAQYFWLINEK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn256", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.288.288", "start_pos": 288, "end_pos": 288, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QYFWLINEKLQTSSQELFIS", "down_seq": "ITTNNSGTYACFVNNTVTGL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn288", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P16573-1.292.292", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P16573-1.302.302", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.292.292", "start_pos": 292, "end_pos": 292, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LINEKLQTSSQELFISNITT", "down_seq": "NSGTYACFVNNTVTGLSRTT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn292", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P16573-1.288.288", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P16573-1.302.302", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.302.302", "start_pos": 302, "end_pos": 302, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QELFISNITTNNSGTYACFV", "down_seq": "NTVTGLSRTTVKNITVFEPV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn302", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P16573-1.288.288", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P16573-1.292.292", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P16573-1.315.315", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.315.315", "start_pos": 315, "end_pos": 315, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GTYACFVNNTVTGLSRTTVK", "down_seq": "ITVFEPVTQPSIQITNTTVK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn315", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P16573-1.302.302", "categories": [ "glycosylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P16573-1.331.331", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.331.331", "start_pos": 331, "end_pos": 331, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TTVKNITVFEPVTQPSIQIT", "down_seq": "TTVKELGSVTLTCFSKDTGV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn331", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P16573-1.315.315", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.374.374", "start_pos": 374, "end_pos": 374, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RWLFNSQSLQLTDRMTLSQD", "down_seq": "STLRIDPIKREDAGDYQCEI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn374", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.415.415", "start_pos": 415, "end_pos": 415, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SNPVSFRISHPIKLDVIPDP", "down_seq": "QGNSGLSEGAIAGIVIGSVA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr415", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WYKGTTLNPDSEIARYIRSD", "down_seq": "MSKTGPAYSGRETIYSNGSL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn87", "evidence": [ { "id": "P16573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16573#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "P16573-1.104.104", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P16573-1.488.488", "start_pos": 488, "end_pos": 488, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Receptor-mediated internalization of insulin. Potential role of pp120/HA4, a substrate of the insulin receptor kinase.", "journal": "The Journal of biological chemistry", "date": "1995", "authors": "Formisano P, Najjar SM, Gross CN, Philippe N, Oriente F, Kern-Buell CL, Accili D, Gorden P", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "reference": [ { "type": "PubMed", "id": "7592607", "url": "https://glygen.org/publication/PubMed/7592607" } ] }, { "title": "Insulin-stimulated phosphorylation of recombinant pp120/HA4, an endogenous substrate of the insulin receptor tyrosine kinase.", "journal": "Biochemistry", "date": "1995", "authors": "Najjar SM, Philippe N, Suzuki Y, Ignacio GA, Formisano P, Accili D, Taylor SI", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "7626603", "url": "https://glygen.org/publication/PubMed/7626603" } ] }, { "title": "Bile acid efflux mediated by the rat liver canalicular bile acid transport/ecto-ATPase protein requires serine 503 phosphorylation and is regulated by tyrosine 488 phosphorylation.", "journal": "The Journal of biological chemistry", "date": "1994", "authors": "Sippel CJ, Fallon RJ, Perlmutter DH", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "7518458", "url": "https://glygen.org/publication/PubMed/7518458" } ] }, { "title": "Insulin stimulates pp120 endocytosis in cells co-expressing insulin receptors.", "journal": "The Journal of biological chemistry", "date": "1998", "authors": "Choice CV, Howard MJ, Poy MN, Hankin MH, Najjar SM", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "9712832", "url": "https://glygen.org/publication/PubMed/9712832" } ] }, { "title": "Insulin acutely decreases hepatic fatty acid synthase activity.", "journal": "Cell metabolism", "date": "2005", "authors": "Najjar SM, Yang Y, Fernstrom MA, Lee SJ, Deangelis AM, Rjaily GA, Al-Share QY, Dai T, Miller TA, Ratnam S, Ruch RJ, Smith S, Lin SH, Beauchemin N, Oyarce AM", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "16054098", "url": "https://glygen.org/publication/PubMed/16054098" } ] }, { "title": "CEACAM1 modulates epidermal growth factor receptor--mediated cell proliferation.", "journal": "The Journal of clinical investigation", "date": "2004", "authors": "Abou-Rjaily GA, Lee SJ, May D, Al-Share QY, Deangelis AM, Ruch RJ, Neumaier M, Kalthoff H, Lin SH, Najjar SM", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "15467833", "url": "https://glygen.org/publication/PubMed/15467833" } ] }, { "title": "pp120, a substrate of the insulin receptor tyrosine kinase, is associated with phosphatase activity.", "journal": "Biochemical and biophysical research communications", "date": "1998", "authors": "Najjar SM", "evidence": [ { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "9642150", "url": "https://glygen.org/publication/PubMed/9642150" } ] } ], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7592607", "url": "https://glygen.org/publication/PubMed/7592607", "database": "PubMed", "categories": [ "Other" ] }, { "id": "7626603", "url": "https://glygen.org/publication/PubMed/7626603", "database": "PubMed", "categories": [ "Other" ] }, { "id": "7518458", "url": "https://glygen.org/publication/PubMed/7518458", "database": "PubMed", "categories": [ "Other" ] }, { "id": "9712832", "url": "https://glygen.org/publication/PubMed/9712832", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16054098", "url": "https://glygen.org/publication/PubMed/16054098", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15467833", "url": "https://glygen.org/publication/PubMed/15467833", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "9642150", "url": "https://glygen.org/publication/PubMed/9642150", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TSSHNLGPSDDSPNKVDDVS", "down_seq": "SVLNFNAQQSKRPTSASSSP", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "Phosphorylated on serine. Decreases bile acid transport Doesn't phosphorylated by EGFR. Doesn't increase interaction with SHC1. Completely inhibits insulin-stimulated phosphorylation. No effect on INSR internalization and INS degradation. Prevents CEACAM1 phosphorylation and the increase in its binding to FASN in the presence of INSR. No effect on cell-surface expression in response to INS. Abolishes phosphorylation by INSR. Abolishes indirect interaction with INSR.", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "PubMed", "id": "7592607", "url": "https://glygen.org/publication/PubMed/7592607" }, { "database": "PubMed", "id": "7626603", "url": "https://glygen.org/publication/PubMed/7626603" }, { "database": "PubMed", "id": "7518458", "url": "https://glygen.org/publication/PubMed/7518458" }, { "database": "PubMed", "id": "9712832", "url": "https://glygen.org/publication/PubMed/9712832" }, { "database": "PubMed", "id": "16054098", "url": "https://glygen.org/publication/PubMed/16054098" }, { "database": "PubMed", "id": "15467833", "url": "https://glygen.org/publication/PubMed/15467833" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by SRC, LCK, INSR and EGFR", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" }, { "database": "PubMed", "id": "7626603", "url": "https://glygen.org/publication/PubMed/7626603" }, { "database": "PubMed", "id": "9642150", "url": "https://glygen.org/publication/PubMed/9642150" }, { "database": "PubMed", "id": "16054098", "url": "https://glygen.org/publication/PubMed/16054098" }, { "database": "PubMed", "id": "7518458", "url": "https://glygen.org/publication/PubMed/7518458" }, { "database": "PubMed", "id": "9712832", "url": "https://glygen.org/publication/PubMed/9712832" }, { "database": "PubMed", "id": "15467833", "url": "https://glygen.org/publication/PubMed/15467833" } ], "site_lbl": "Tyr488" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "P16573-1.502.503", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P16573-1.503.503", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P16573-1.502.503", "start_pos": 502, "end_pos": 503, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Bile acid efflux mediated by the rat liver canalicular bile acid transport/ecto-ATPase protein requires serine 503 phosphorylation and is regulated by tyrosine 488 phosphorylation.", "journal": "The Journal of biological chemistry", "date": "1994", "authors": "Sippel CJ, Fallon RJ, Perlmutter DH", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "7518458", "url": "https://glygen.org/publication/PubMed/7518458" } ] } ], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7518458", "url": "https://glygen.org/publication/PubMed/7518458", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "TS", "start_aa": "T", "up_seq": "KVDDVSYSVLNFNAQQSKRP", "down_seq": "ASSSPTETVYSVVKKK", "mutagenesis": [ { "sequence_org": "TS", "sequence_mut": "AA", "comment": "Phosphorylated on tyrosine. Impairs bile acid transport.", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "PubMed", "id": "7518458", "url": "https://glygen.org/publication/PubMed/7518458" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P16573-1.488.488", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 0, "direction": "upstream", "id": "P16573-1.503.503", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P16573-1.513.513", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P16573-1.503.503", "start_pos": 503, "end_pos": 503, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "CEACAM1 regulates insulin clearance in liver.", "journal": "Nature genetics", "date": "2002", "authors": "Poy MN, Yang Y, Rezaei K, Fernstrom MA, Lee AD, Kido Y, Erickson SK, Najjar SM", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "reference": [ { "type": "PubMed", "id": "11850617", "url": "https://glygen.org/publication/PubMed/11850617" } ] }, { "title": "Receptor-mediated internalization of insulin. Potential role of pp120/HA4, a substrate of the insulin receptor kinase.", "journal": "The Journal of biological chemistry", "date": "1995", "authors": "Formisano P, Najjar SM, Gross CN, Philippe N, Oriente F, Kern-Buell CL, Accili D, Gorden P", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "reference": [ { "type": "PubMed", "id": "7592607", "url": "https://glygen.org/publication/PubMed/7592607" } ] }, { "title": "Insulin-stimulated phosphorylation of recombinant pp120/HA4, an endogenous substrate of the insulin receptor tyrosine kinase.", "journal": "Biochemistry", "date": "1995", "authors": "Najjar SM, Philippe N, Suzuki Y, Ignacio GA, Formisano P, Accili D, Taylor SI", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "7626603", "url": "https://glygen.org/publication/PubMed/7626603" } ] }, { "title": "Shc and CEACAM1 interact to regulate the mitogenic action of insulin.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Poy MN, Ruch RJ, Fernstrom MA, Okabayashi Y, Najjar SM", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "reference": [ { "type": "PubMed", "id": "11694516", "url": "https://glygen.org/publication/PubMed/11694516" } ] }, { "title": "Insulin stimulates pp120 endocytosis in cells co-expressing insulin receptors.", "journal": "The Journal of biological chemistry", "date": "1998", "authors": "Choice CV, Howard MJ, Poy MN, Hankin MH, Najjar SM", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "9712832", "url": "https://glygen.org/publication/PubMed/9712832" } ] }, { "title": "Insulin acutely decreases hepatic fatty acid synthase activity.", "journal": "Cell metabolism", "date": "2005", "authors": "Najjar SM, Yang Y, Fernstrom MA, Lee SJ, Deangelis AM, Rjaily GA, Al-Share QY, Dai T, Miller TA, Ratnam S, Ruch RJ, Smith S, Lin SH, Beauchemin N, Oyarce AM", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "16054098", "url": "https://glygen.org/publication/PubMed/16054098" } ] }, { "title": "CEACAM1 modulates epidermal growth factor receptor--mediated cell proliferation.", "journal": "The Journal of clinical investigation", "date": "2004", "authors": "Abou-Rjaily GA, Lee SJ, May D, Al-Share QY, Deangelis AM, Ruch RJ, Neumaier M, Kalthoff H, Lin SH, Najjar SM", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "15467833", "url": "https://glygen.org/publication/PubMed/15467833" } ] }, { "title": "Bile acid efflux mediated by the rat liver canalicular bile acid transport/ecto-ATPase protein requires serine 503 phosphorylation and is regulated by tyrosine 488 phosphorylation.", "journal": "The Journal of biological chemistry", "date": "1994", "authors": "Sippel CJ, Fallon RJ, Perlmutter DH", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "7518458", "url": "https://glygen.org/publication/PubMed/7518458" } ] }, { "title": "pp120, a substrate of the insulin receptor tyrosine kinase, is associated with phosphatase activity.", "journal": "Biochemical and biophysical research communications", "date": "1998", "authors": "Najjar SM", "evidence": [ { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "9642150", "url": "https://glygen.org/publication/PubMed/9642150" } ] } ], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11850617", "url": "https://glygen.org/publication/PubMed/11850617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "7592607", "url": "https://glygen.org/publication/PubMed/7592607", "database": "PubMed", "categories": [ "Other" ] }, { "id": "7626603", "url": "https://glygen.org/publication/PubMed/7626603", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11694516", "url": "https://glygen.org/publication/PubMed/11694516", "database": "PubMed", "categories": [ "Other" ] }, { "id": "9712832", "url": "https://glygen.org/publication/PubMed/9712832", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16054098", "url": "https://glygen.org/publication/PubMed/16054098", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15467833", "url": "https://glygen.org/publication/PubMed/15467833", "database": "PubMed", "categories": [ "Other" ] }, { "id": "7518458", "url": "https://glygen.org/publication/PubMed/7518458", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "9642150", "url": "https://glygen.org/publication/PubMed/9642150", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VDDVSYSVLNFNAQQSKRPT", "down_seq": "ASSSPTETVYSVVKKK", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes phosphorylation by EGFR. Reduces interaction with SHC1. Completely inhibits insulin-stimulated phosphorylation. No effect on INSR internalization and INS degradation. In L-SACC1; completely inhibits insulin-stimulated phosphorylation; develops hyperinsulinemia resulting from impaired insulin clearance; the hyperinsulinemia causes secondary insulin resistance with impaired glucose tolerance and random, but not fasting, hyperglycemia; insulin doesn't significantly decrease FASN activity in liver. Prevents CEACAM1 phosphorylation and the increase in its binding to FASN in the presence of INSR. No effect on cell-surface expression in response to INS.", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "PubMed", "id": "11850617", "url": "https://glygen.org/publication/PubMed/11850617" }, { "database": "PubMed", "id": "7592607", "url": "https://glygen.org/publication/PubMed/7592607" }, { "database": "PubMed", "id": "7626603", "url": "https://glygen.org/publication/PubMed/7626603" }, { "database": "PubMed", "id": "11694516", "url": "https://glygen.org/publication/PubMed/11694516" }, { "database": "PubMed", "id": "9712832", "url": "https://glygen.org/publication/PubMed/9712832" }, { "database": "PubMed", "id": "16054098", "url": "https://glygen.org/publication/PubMed/16054098" }, { "database": "PubMed", "id": "15467833", "url": "https://glygen.org/publication/PubMed/15467833" } ] }, { "sequence_org": "S", "sequence_mut": "D", "comment": "Preserves the ability of INSR to induce CEACAM1 phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "PubMed", "id": "16054098", "url": "https://glygen.org/publication/PubMed/16054098" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "PubMed", "id": "16054098", "url": "https://glygen.org/publication/PubMed/16054098" }, { "database": "PubMed", "id": "7518458", "url": "https://glygen.org/publication/PubMed/7518458" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" }, { "database": "PubMed", "id": "9642150", "url": "https://glygen.org/publication/PubMed/9642150" } ], "site_lbl": "Ser503" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P16573-1.488.488", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 0, "direction": "downstream", "id": "P16573-1.502.503", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P16573-1.513.513", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P16573-1.513.513", "start_pos": 513, "end_pos": 513, "uniprot_canonical_ac": "P16573-1", "length": 519, "uniprot_id": "CEAM1_RAT", "protein_name": "Cell adhesion molecule CEACAM1", "refseq_ac": "NP_001029032", "refseq_name": "cell adhesion molecule CEACAM1 isoform 1 precursor", "gene_name": "Ceacam1", "gene_names_uniprotkb": "Ceacam1", "gene_names_refseq": "BGPR; Bgp; CD66a; Ccam1; Ceacam1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Receptor-mediated internalization of insulin. Potential role of pp120/HA4, a substrate of the insulin receptor kinase.", "journal": "The Journal of biological chemistry", "date": "1995", "authors": "Formisano P, Najjar SM, Gross CN, Philippe N, Oriente F, Kern-Buell CL, Accili D, Gorden P", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" } ], "reference": [ { "type": "PubMed", "id": "7592607", "url": "https://glygen.org/publication/PubMed/7592607" } ] }, { "title": "Insulin stimulates pp120 endocytosis in cells co-expressing insulin receptors.", "journal": "The Journal of biological chemistry", "date": "1998", "authors": "Choice CV, Howard MJ, Poy MN, Hankin MH, Najjar SM", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "9712832", "url": "https://glygen.org/publication/PubMed/9712832" } ] }, { "title": "Insulin acutely decreases hepatic fatty acid synthase activity.", "journal": "Cell metabolism", "date": "2005", "authors": "Najjar SM, Yang Y, Fernstrom MA, Lee SJ, Deangelis AM, Rjaily GA, Al-Share QY, Dai T, Miller TA, Ratnam S, Ruch RJ, Smith S, Lin SH, Beauchemin N, Oyarce AM", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "16054098", "url": "https://glygen.org/publication/PubMed/16054098" } ] }, { "title": "pp120, a substrate of the insulin receptor tyrosine kinase, is associated with phosphatase activity.", "journal": "Biochemical and biophysical research communications", "date": "1998", "authors": "Najjar SM", "evidence": [ { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" } ], "reference": [ { "type": "PubMed", "id": "9642150", "url": "https://glygen.org/publication/PubMed/9642150" } ] } ], "crossref": [ { "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7592607", "url": "https://glygen.org/publication/PubMed/7592607", "database": "PubMed", "categories": [ "Other" ] }, { "id": "9712832", "url": "https://glygen.org/publication/PubMed/9712832", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16054098", "url": "https://glygen.org/publication/PubMed/16054098", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "9642150", "url": "https://glygen.org/publication/PubMed/9642150", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "FNAQQSKRPTSASSSPTETV", "down_seq": "SVVKKK", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "Increases INSR internalization and INS degradation. Phosphorylated by INSR. Prevents the increase in CEACAM1 binding to FASN by INSR. Decreases cell-surface expression in response to INS. Doesn't affect phosphorylation by INSR.", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "PubMed", "id": "7592607", "url": "https://glygen.org/publication/PubMed/7592607" }, { "database": "PubMed", "id": "9712832", "url": "https://glygen.org/publication/PubMed/9712832" }, { "database": "PubMed", "id": "16054098", "url": "https://glygen.org/publication/PubMed/16054098" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by INSR, SRC and LCK", "evidence": [ { "database": "UniProtKB", "id": "P16573", "url": "https://www.uniprot.org/uniprotkb/P16573" }, { "database": "iPTMnet", "id": "P16573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P16573" }, { "database": "PubMed", "id": "9642150", "url": "https://glygen.org/publication/PubMed/9642150" }, { "database": "PubMed", "id": "16054098", "url": "https://glygen.org/publication/PubMed/16054098" } ], "site_lbl": "Tyr513" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "331", "end_pos": "331" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "502", "end_pos": "503" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "488", "end_pos": "488" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "513", "end_pos": "513" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P16573-1.502.503", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P16573-1.503.503", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P18508-1.128.128", "start_pos": 128, "end_pos": 128, "uniprot_canonical_ac": "P18508-1", "length": 466, "uniprot_id": "GBRG2_RAT", "protein_name": "Gamma-aminobutyric acid receptor subunit gamma-2", "refseq_ac": "NP_899156", "refseq_name": "gamma-aminobutyric acid receptor subunit gamma-2 isoform 2 precursor", "gene_name": "Gabrg2", "gene_names_uniprotkb": "Gabrg2", "gene_names_refseq": "Gabrg2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P18508", "url": "https://www.uniprot.org/uniprotkb/P18508" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P18508", "url": "https://www.uniprot.org/uniprotkb/P18508", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9OUM", "url": "https://www.rcsb.org/structure/9OUM", "database": "PDB", "categories": [ "Other" ] }, { "id": "9OUN", "url": "https://www.rcsb.org/structure/9OUN", "database": "PDB", "categories": [ "Other" ] }, { "id": "9OUP", "url": "https://www.rcsb.org/structure/9OUP", "database": "PDB", "categories": [ "Other" ] }, { "id": "9OUR", "url": "https://www.rcsb.org/structure/9OUR", "database": "PDB", "categories": [ "Other" ] }, { "id": "9OV4", "url": "https://www.rcsb.org/structure/9OV4", "database": "PDB", "categories": [ "Other" ] }, { "id": "9OUQ", "url": "https://www.rcsb.org/structure/9OUQ", "database": "PDB", "categories": [ "Other" ] }, { "id": "9OUO", "url": "https://www.rcsb.org/structure/9OUO", "database": "PDB", "categories": [ "Other" ] }, { "id": "9OUM|D|90", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9OUN|D|90", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9OUP|D|90", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9OUR|D|90", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9OV4|D|90", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9OUQ|D|90", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9OUO|D|90", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "MEYTIDIFFAQTWYDRRLKF", "down_seq": "STIKVLRLNSNMVGKIWIPD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=9OUM&bu=0&command=select+.D:90;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn128", "evidence": [ { "id": "P18508", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P18508#ptm_processing" }, { "id": "9OUM", "database": "PDB", "url": "https://www.rcsb.org/structure/9OUM" }, { "id": "9OUN", "database": "PDB", "url": "https://www.rcsb.org/structure/9OUN" }, { "id": "9OUP", "database": "PDB", "url": "https://www.rcsb.org/structure/9OUP" }, { "id": "9OUR", "database": "PDB", "url": "https://www.rcsb.org/structure/9OUR" }, { "id": "9OV4", "database": "PDB", "url": "https://www.rcsb.org/structure/9OV4" }, { "id": "9OUQ", "database": "PDB", "url": "https://www.rcsb.org/structure/9OUQ" }, { "id": "9OUO", "database": "PDB", "url": "https://www.rcsb.org/structure/9OUO" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P18508-1.246.246", "start_pos": 246, "end_pos": 246, "uniprot_canonical_ac": "P18508-1", "length": 466, "uniprot_id": "GBRG2_RAT", "protein_name": "Gamma-aminobutyric acid receptor subunit gamma-2", "refseq_ac": "NP_899156", "refseq_name": "gamma-aminobutyric acid receptor subunit gamma-2 isoform 2 precursor", "gene_name": "Gabrg2", "gene_names_uniprotkb": "Gabrg2", "gene_names_refseq": "Gabrg2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P18508", "url": "https://www.uniprot.org/uniprotkb/P18508" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P18508", "url": "https://www.uniprot.org/uniprotkb/P18508", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VEVGDTRSWRLYQFSFVGLR", "down_seq": "TTEVVKTTSGDYVVMSVYFD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn246", "evidence": [ { "id": "P18508", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P18508#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P18508-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "P18508-1", "length": 466, "uniprot_id": "GBRG2_RAT", "protein_name": "Gamma-aminobutyric acid receptor subunit gamma-2", "refseq_ac": "NP_899156", "refseq_name": "gamma-aminobutyric acid receptor subunit gamma-2 isoform 2 precursor", "gene_name": "Gabrg2", "gene_names_uniprotkb": "Gabrg2", "gene_names_refseq": "Gabrg2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P18508", "url": "https://www.uniprot.org/uniprotkb/P18508" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P18508", "url": "https://www.uniprot.org/uniprotkb/P18508", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SLYPGFTSQKSDDDYEDYAS", "down_seq": "KTWVLTPKVPEGDVTVILNN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn51", "evidence": [ { "id": "P18508", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P18508#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P18508-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P18508-1", "length": 466, "uniprot_id": "GBRG2_RAT", "protein_name": "Gamma-aminobutyric acid receptor subunit gamma-2", "refseq_ac": "NP_899156", "refseq_name": "gamma-aminobutyric acid receptor subunit gamma-2 isoform 2 precursor", "gene_name": "Gabrg2", "gene_names_uniprotkb": "Gabrg2", "gene_names_refseq": "Gabrg2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P18508", "url": "https://www.uniprot.org/uniprotkb/P18508" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P18508", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P18508" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P18508", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P18508", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P18508", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P18508" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "128", "end_pos": "128" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P22509-1.122.122", "start_pos": 122, "end_pos": 122, "uniprot_canonical_ac": "P22509-1", "length": 327, "uniprot_id": "FBRL_RAT", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "refseq_ac": "NP_001020814", "refseq_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "Fbl", "gene_names_uniprotkb": "Fbl", "gene_names_refseq": "Fbl", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22509", "url": "https://www.uniprot.org/uniprotkb/P22509" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P22509", "url": "https://www.uniprot.org/uniprotkb/P22509", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VFICRGKEDALVTKNLVPGE", "down_seq": "VYGEKRVSISEGDDKIEYRA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P22509", "url": "https://www.uniprot.org/uniprotkb/P22509" } ], "site_lbl": "Ser122" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "P22509-1.130.130", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P22509-1.132.132", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P22509-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "P22509-1", "length": 327, "uniprot_id": "FBRL_RAT", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "refseq_ac": "NP_001020814", "refseq_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "Fbl", "gene_names_uniprotkb": "Fbl", "gene_names_refseq": "Fbl", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22509", "url": "https://www.uniprot.org/uniprotkb/P22509" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P22509", "url": "https://www.uniprot.org/uniprotkb/P22509" }, { "database": "iPTMnet", "id": "P22509", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P22509" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P22509", "url": "https://www.uniprot.org/uniprotkb/P22509", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P22509", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P22509", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DALVTKNLVPGESVYGEKRV", "down_seq": "ISEGDDKIEYRAWNPFRSKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P22509", "url": "https://www.uniprot.org/uniprotkb/P22509" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P22509", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P22509" } ], "site_lbl": "Ser130" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P22509-1.122.122", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P22509-1.132.132", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P22509-1.132.132", "start_pos": 132, "end_pos": 132, "uniprot_canonical_ac": "P22509-1", "length": 327, "uniprot_id": "FBRL_RAT", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "refseq_ac": "NP_001020814", "refseq_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "Fbl", "gene_names_uniprotkb": "Fbl", "gene_names_refseq": "Fbl", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P22509", "url": "https://www.uniprot.org/uniprotkb/P22509" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P22509", "url": "https://www.uniprot.org/uniprotkb/P22509", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVTKNLVPGESVYGEKRVSI", "down_seq": "EGDDKIEYRAWNPFRSKLAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P22509", "url": "https://www.uniprot.org/uniprotkb/P22509" } ], "site_lbl": "Ser132" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "122", "end_pos": "122" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "132", "end_pos": "132" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P22509-1.122.122", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P22509-1.130.130", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P35411-1.345.345", "start_pos": 345, "end_pos": 345, "uniprot_canonical_ac": "P35411-1", "length": 354, "uniprot_id": "CX3C1_RAT", "protein_name": "CX3C chemokine receptor 1", "refseq_ac": "NP_598218", "refseq_name": "CX3C chemokine receptor 1", "gene_name": "Cx3cr1", "gene_names_uniprotkb": "Cx3cr1; Rbs11", "gene_names_refseq": "Cx3cr1; Rbs11", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35411", "url": "https://www.uniprot.org/uniprotkb/P35411" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P35411", "url": "https://www.uniprot.org/uniprotkb/P35411", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FSTESQRSRQDSILSSLTHY", "down_seq": "SEGEGSLLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P35411", "url": "https://www.uniprot.org/uniprotkb/P35411" } ], "site_lbl": "Thr345" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "345", "end_pos": "345" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q09426-1.333.333", "start_pos": 333, "end_pos": 333, "uniprot_canonical_ac": "Q09426-1", "length": 541, "uniprot_id": "CGT_RAT", "protein_name": "2-hydroxyacylsphingosine 1-beta-galactosyltransferase", "refseq_ac": "NP_062149", "refseq_name": "2-hydroxyacylsphingosine 1-beta-galactosyltransferase precursor", "gene_name": "Ugt8", "gene_names_uniprotkb": "Ugt8; Cgt; Ugt4", "gene_names_refseq": "CGalT; Ugt8a; Ugt8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q09426", "url": "https://www.uniprot.org/uniprotkb/Q09426" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Ceramide UDPgalactosyltransferase from myelinating rat brain: purification, cloning, and expression.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1993", "authors": "Schulte S, Stoffel W", "evidence": [ { "database": "UniProtKB", "id": "Q09426", "url": "https://www.uniprot.org/uniprotkb/Q09426#ptm_processing" }, { "database": "UniProtKB", "id": "Q09426", "url": "https://www.uniprot.org/uniprotkb/Q09426" } ], "reference": [ { "type": "PubMed", "id": "7694285", "url": "https://glygen.org/publication/PubMed/7694285" } ] } ], "crossref": [ { "id": "Q09426", "url": "https://www.uniprot.org/uniprotkb/Q09426", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7694285", "url": "https://glygen.org/publication/PubMed/7694285", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GRLPQKVIWRFSGTKPKNLG", "down_seq": "NTKLIEWLPQNDLLGHSNIR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn333", "evidence": [ { "id": "Q09426", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q09426#ptm_processing" }, { "id": "7694285", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/7694285" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "333", "end_pos": "333" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q09426-1.442.442", "start_pos": 442, "end_pos": 442, "uniprot_canonical_ac": "Q09426-1", "length": 541, "uniprot_id": "CGT_RAT", "protein_name": "2-hydroxyacylsphingosine 1-beta-galactosyltransferase", "refseq_ac": "NP_062149", "refseq_name": "2-hydroxyacylsphingosine 1-beta-galactosyltransferase precursor", "gene_name": "Ugt8", "gene_names_uniprotkb": "Ugt8; Cgt; Ugt4", "gene_names_refseq": "CGalT; Ugt8a; Ugt8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q09426", "url": "https://www.uniprot.org/uniprotkb/Q09426" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q09426", "url": "https://www.uniprot.org/uniprotkb/Q09426", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YRQRAQKLSEIHKDQPGHPV", "down_seq": "RTTYWIDYILRHDGAHHLRS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn442", "evidence": [ { "id": "Q09426", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q09426#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "333", "end_pos": "333" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q09426-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "Q09426-1", "length": 541, "uniprot_id": "CGT_RAT", "protein_name": "2-hydroxyacylsphingosine 1-beta-galactosyltransferase", "refseq_ac": "NP_062149", "refseq_name": "2-hydroxyacylsphingosine 1-beta-galactosyltransferase precursor", "gene_name": "Ugt8", "gene_names_uniprotkb": "Ugt8; Cgt; Ugt4", "gene_names_refseq": "CGalT; Ugt8a; Ugt8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q09426", "url": "https://www.uniprot.org/uniprotkb/Q09426" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Ceramide UDPgalactosyltransferase from myelinating rat brain: purification, cloning, and expression.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1993", "authors": "Schulte S, Stoffel W", "evidence": [ { "database": "UniProtKB", "id": "Q09426", "url": "https://www.uniprot.org/uniprotkb/Q09426#ptm_processing" }, { "database": "UniProtKB", "id": "Q09426", "url": "https://www.uniprot.org/uniprotkb/Q09426" } ], "reference": [ { "type": "PubMed", "id": "7694285", "url": "https://glygen.org/publication/PubMed/7694285" } ] } ], "crossref": [ { "id": "Q09426", "url": "https://www.uniprot.org/uniprotkb/Q09426", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7694285", "url": "https://glygen.org/publication/PubMed/7694285", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EGRDIDPSNHYSLQRYPGIF", "down_seq": "STTSDAFLQSKMRNIFSGRL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn78", "evidence": [ { "id": "Q09426", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q09426#ptm_processing" }, { "id": "7694285", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/7694285" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "333", "end_pos": "333" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64654-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "Q64654-1", "length": 503, "uniprot_id": "CP51A_RAT", "protein_name": "Lanosterol 14-alpha demethylase", "refseq_ac": "NP_037073", "refseq_name": "lanosterol 14-alpha demethylase", "gene_name": "Cyp51a1", "gene_names_uniprotkb": "Cyp51a1; Cyp51", "gene_names_refseq": "Cyp51a1; Cyp51; RATCP14DM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "The amino acid residues affecting the activity and azole susceptibility of rat CYP51 (sterol 14-demethylase P450).", "journal": "Journal of biochemistry", "date": "2001", "authors": "Nitahara Y, Kishimoto K, Yabusaki Y, Gotoh O, Yoshida Y, Horiuchi T, Aoyama Y", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "reference": [ { "type": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "crossref": [ { "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "GSDAAALLFNSKNEDLNAEE", "down_seq": "YGRLTTPVFGKGVAYDVPNA", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Decreases lanosterol 14-alpha demethylase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q64654-1.136.136", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q64654-1.139.139", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q64654-1.144.144", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64654-1.136.136", "start_pos": 136, "end_pos": 136, "uniprot_canonical_ac": "Q64654-1", "length": 503, "uniprot_id": "CP51A_RAT", "protein_name": "Lanosterol 14-alpha demethylase", "refseq_ac": "NP_037073", "refseq_name": "lanosterol 14-alpha demethylase", "gene_name": "Cyp51a1", "gene_names_uniprotkb": "Cyp51a1; Cyp51", "gene_names_refseq": "Cyp51a1; Cyp51; RATCP14DM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "The amino acid residues affecting the activity and azole susceptibility of rat CYP51 (sterol 14-demethylase P450).", "journal": "Journal of biochemistry", "date": "2001", "authors": "Nitahara Y, Kishimoto K, Yabusaki Y, Gotoh O, Yoshida Y, Horiuchi T, Aoyama Y", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "reference": [ { "type": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "crossref": [ { "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LLFNSKNEDLNAEEVYGRLT", "down_seq": "PVFGKGVAYDVPNAVFLEQK", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Decreases lanosterol 14-alpha demethylase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] }, { "sequence_org": "T", "sequence_mut": "V", "comment": "Decreases lanosterol 14-alpha demethylase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q64654-1.130.130", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q64654-1.139.139", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q64654-1.144.144", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64654-1.139.139", "start_pos": 139, "end_pos": 139, "uniprot_canonical_ac": "Q64654-1", "length": 503, "uniprot_id": "CP51A_RAT", "protein_name": "Lanosterol 14-alpha demethylase", "refseq_ac": "NP_037073", "refseq_name": "lanosterol 14-alpha demethylase", "gene_name": "Cyp51a1", "gene_names_uniprotkb": "Cyp51a1; Cyp51", "gene_names_refseq": "Cyp51a1; Cyp51; RATCP14DM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "The amino acid residues affecting the activity and azole susceptibility of rat CYP51 (sterol 14-demethylase P450).", "journal": "Journal of biochemistry", "date": "2001", "authors": "Nitahara Y, Kishimoto K, Yabusaki Y, Gotoh O, Yoshida Y, Horiuchi T, Aoyama Y", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "reference": [ { "type": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "crossref": [ { "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "NSKNEDLNAEEVYGRLTTPV", "down_seq": "GKGVAYDVPNAVFLEQKKIL", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Impairs lanosterol 14-alpha demethylase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q64654-1.130.130", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q64654-1.136.136", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q64654-1.144.144", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64654-1.144.144", "start_pos": 144, "end_pos": 144, "uniprot_canonical_ac": "Q64654-1", "length": 503, "uniprot_id": "CP51A_RAT", "protein_name": "Lanosterol 14-alpha demethylase", "refseq_ac": "NP_037073", "refseq_name": "lanosterol 14-alpha demethylase", "gene_name": "Cyp51a1", "gene_names_uniprotkb": "Cyp51a1; Cyp51", "gene_names_refseq": "Cyp51a1; Cyp51; RATCP14DM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "The amino acid residues affecting the activity and azole susceptibility of rat CYP51 (sterol 14-demethylase P450).", "journal": "Journal of biochemistry", "date": "2001", "authors": "Nitahara Y, Kishimoto K, Yabusaki Y, Gotoh O, Yoshida Y, Horiuchi T, Aoyama Y", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "reference": [ { "type": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "crossref": [ { "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "DLNAEEVYGRLTTPVFGKGV", "down_seq": "YDVPNAVFLEQKKILKSGLN", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "I", "comment": "Decreases lanosterol 14-alpha demethylase activity. Increases the susceptibility to ketoconazole.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] }, { "sequence_org": "A", "sequence_mut": "V", "comment": "Decreases lanosterol 14-alpha demethylase activity. Increases the susceptibility to ketoconazole.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q64654-1.130.130", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q64654-1.136.136", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q64654-1.139.139", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64654-1.227.227", "start_pos": 227, "end_pos": 227, "uniprot_canonical_ac": "Q64654-1", "length": 503, "uniprot_id": "CP51A_RAT", "protein_name": "Lanosterol 14-alpha demethylase", "refseq_ac": "NP_037073", "refseq_name": "lanosterol 14-alpha demethylase", "gene_name": "Cyp51a1", "gene_names_uniprotkb": "Cyp51a1; Cyp51", "gene_names_refseq": "Cyp51a1; Cyp51; RATCP14DM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "The amino acid residues affecting the activity and azole susceptibility of rat CYP51 (sterol 14-demethylase P450).", "journal": "Journal of biochemistry", "date": "2001", "authors": "Nitahara Y, Kishimoto K, Yabusaki Y, Gotoh O, Yoshida Y, Horiuchi T, Aoyama Y", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "reference": [ { "type": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "crossref": [ { "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "SHCLHGKEIRSQLNEKVAQL", "down_seq": "ADLDGGFSHAAWLLPGWLPL", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Significantly decreases lanosterol 14-alpha demethylase activity. Increases the susceptibility to ketoconazole.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q64654-1.231.231", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64654-1.231.231", "start_pos": 231, "end_pos": 231, "uniprot_canonical_ac": "Q64654-1", "length": 503, "uniprot_id": "CP51A_RAT", "protein_name": "Lanosterol 14-alpha demethylase", "refseq_ac": "NP_037073", "refseq_name": "lanosterol 14-alpha demethylase", "gene_name": "Cyp51a1", "gene_names_uniprotkb": "Cyp51a1; Cyp51", "gene_names_refseq": "Cyp51a1; Cyp51; RATCP14DM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "The amino acid residues affecting the activity and azole susceptibility of rat CYP51 (sterol 14-demethylase P450).", "journal": "Journal of biochemistry", "date": "2001", "authors": "Nitahara Y, Kishimoto K, Yabusaki Y, Gotoh O, Yoshida Y, Horiuchi T, Aoyama Y", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "reference": [ { "type": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "crossref": [ { "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "HGKEIRSQLNEKVAQLYADL", "down_seq": "GGFSHAAWLLPGWLPLPSFR", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Significantly decreases lanosterol 14-alpha demethylase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] }, { "sequence_org": "D", "sequence_mut": "E", "comment": "Significantly decreases lanosterol 14-alpha demethylase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q64654-1.227.227", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64654-1.314.314", "start_pos": 314, "end_pos": 314, "uniprot_canonical_ac": "Q64654-1", "length": 503, "uniprot_id": "CP51A_RAT", "protein_name": "Lanosterol 14-alpha demethylase", "refseq_ac": "NP_037073", "refseq_name": "lanosterol 14-alpha demethylase", "gene_name": "Cyp51a1", "gene_names_uniprotkb": "Cyp51a1; Cyp51", "gene_names_refseq": "Cyp51a1; Cyp51; RATCP14DM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "The amino acid residues affecting the activity and azole susceptibility of rat CYP51 (sterol 14-demethylase P450).", "journal": "Journal of biochemistry", "date": "2001", "authors": "Nitahara Y, Kishimoto K, Yabusaki Y, Gotoh O, Yoshida Y, Horiuchi T, Aoyama Y", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "reference": [ { "type": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "crossref": [ { "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "RPLTDDEIAGMLIGLLLAGQ", "down_seq": "TSSTTSAWMGFFLARDKPLQ", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Significantly decreases lanosterol 14-alpha demethylase activity. Increases the susceptibility to ketoconazole.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] }, { "sequence_org": "H", "sequence_mut": "D", "comment": "Significantly decreases lanosterol 14-alpha demethylase activity. Increases the susceptibility to ketoconazole.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] }, { "sequence_org": "H", "sequence_mut": "F", "comment": "Significantly decreases lanosterol 14-alpha demethylase activity. Increases the susceptibility to ketoconazole.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] }, { "sequence_org": "H", "sequence_mut": "K", "comment": "Significantly decreases lanosterol 14-alpha demethylase activity. Increases the susceptibility to ketoconazole.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q64654-1.315.315", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q64654-1.316.316", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64654-1.315.315", "start_pos": 315, "end_pos": 315, "uniprot_canonical_ac": "Q64654-1", "length": 503, "uniprot_id": "CP51A_RAT", "protein_name": "Lanosterol 14-alpha demethylase", "refseq_ac": "NP_037073", "refseq_name": "lanosterol 14-alpha demethylase", "gene_name": "Cyp51a1", "gene_names_uniprotkb": "Cyp51a1; Cyp51", "gene_names_refseq": "Cyp51a1; Cyp51; RATCP14DM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "The amino acid residues affecting the activity and azole susceptibility of rat CYP51 (sterol 14-demethylase P450).", "journal": "Journal of biochemistry", "date": "2001", "authors": "Nitahara Y, Kishimoto K, Yabusaki Y, Gotoh O, Yoshida Y, Horiuchi T, Aoyama Y", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "reference": [ { "type": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "crossref": [ { "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PLTDDEIAGMLIGLLLAGQH", "down_seq": "SSTTSAWMGFFLARDKPLQD", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Impairs lanosterol 14-alpha demethylase activity. Increases the susceptibility to ketoconazole.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] }, { "sequence_org": "T", "sequence_mut": "K", "comment": "Impairs lanosterol 14-alpha demethylase activity. Increases the susceptibility to ketoconazole.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] }, { "sequence_org": "T", "sequence_mut": "N", "comment": "Impairs lanosterol 14-alpha demethylase activity. Increases the susceptibility to ketoconazole.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] }, { "sequence_org": "T", "sequence_mut": "V", "comment": "Impairs lanosterol 14-alpha demethylase activity. Increases the susceptibility to ketoconazole.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q64654-1.314.314", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q64654-1.316.316", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64654-1.316.316", "start_pos": 316, "end_pos": 316, "uniprot_canonical_ac": "Q64654-1", "length": 503, "uniprot_id": "CP51A_RAT", "protein_name": "Lanosterol 14-alpha demethylase", "refseq_ac": "NP_037073", "refseq_name": "lanosterol 14-alpha demethylase", "gene_name": "Cyp51a1", "gene_names_uniprotkb": "Cyp51a1; Cyp51", "gene_names_refseq": "Cyp51a1; Cyp51; RATCP14DM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "The amino acid residues affecting the activity and azole susceptibility of rat CYP51 (sterol 14-demethylase P450).", "journal": "Journal of biochemistry", "date": "2001", "authors": "Nitahara Y, Kishimoto K, Yabusaki Y, Gotoh O, Yoshida Y, Horiuchi T, Aoyama Y", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" } ], "reference": [ { "type": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "crossref": [ { "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LTDDEIAGMLIGLLLAGQHT", "down_seq": "STTSAWMGFFLARDKPLQDK", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "L", "comment": "Significantly decreases lanosterol 14-alpha demethylase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] }, { "sequence_org": "S", "sequence_mut": "T", "comment": "Significantly decreases lanosterol 14-alpha demethylase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] }, { "sequence_org": "S", "sequence_mut": "V", "comment": "Significantly decreases lanosterol 14-alpha demethylase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q64654", "url": "https://www.uniprot.org/uniprotkb/Q64654" }, { "database": "PubMed", "id": "11328599", "url": "https://glygen.org/publication/PubMed/11328599" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "130", "end_pos": "130" }, { "start_pos": "136", "end_pos": "136" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "227", "end_pos": "227" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "316", "end_pos": "316" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q64654-1.314.314", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q64654-1.315.315", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK11-1.160.160", "start_pos": 160, "end_pos": 160, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PPPPPPAGASPLAEPAAPPS", "down_seq": "PAAPKRRGSGSVDETLFALP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr160", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9JK11-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9JK11-1.169.169", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9JK11-1.171.171", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK11-1.583.583", "start_pos": 583, "end_pos": 583, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IQESLYPTAQLCPSFEEAEA", "down_seq": "PSPVLPDIVMEAPLNSLLPS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr583", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK11-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPAPRGPLPAAPPAAPERQP", "down_seq": "WERSPAAPAPSLPPAAAVLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "site_lbl": "Ser107" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK11-1.149.149", "start_pos": 149, "end_pos": 149, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLPEDDEPPARPPPPPPAGA", "down_seq": "PLAEPAAPPSTPAAPKRRGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "site_lbl": "Ser149" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q9JK11-1.160.160", "categories": [ "glycosylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9JK11-1.169.169", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK11-1.169.169", "start_pos": 169, "end_pos": 169, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPLAEPAAPPSTPAAPKRRG", "down_seq": "GSVDETLFALPAASEPVIPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "site_lbl": "Ser169" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9JK11-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9JK11-1.160.160", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9JK11-1.171.171", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK11-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] }, { "title": "Phosphorylation-regulated cleavage of the reticulon protein Nogo-B by caspase-7 at a noncanonical recognition site.", "journal": "Proteomics", "date": "2007", "authors": "Schweigreiter R, Stasyk T, Contarini I, Frauscher S, Oertle T, Klimaschewski L, Huber LA, Bandtlow CE", "evidence": [ { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "reference": [ { "type": "PubMed", "id": "18072206", "url": "https://glygen.org/publication/PubMed/18072206" } ] } ], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18072206", "url": "https://glygen.org/publication/PubMed/18072206", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEDIDQSSLVSSSTD", "down_seq": "PPRPPPAFKYQFVTEPEDEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" }, { "database": "PubMed", "id": "18072206", "url": "https://glygen.org/publication/PubMed/18072206" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q9JK11-1.7.7", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK11-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LAEPAAPPSTPAAPKRRGSG", "down_seq": "VDETLFALPAASEPVIPSSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "site_lbl": "Ser171" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9JK11-1.160.160", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9JK11-1.169.169", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK11-1.329.329", "start_pos": 329, "end_pos": 329, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEVIVRSKDKEDLVCSAALH", "down_seq": "PQESPVGKEDRVVSPEKTMD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "site_lbl": "Ser329" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9JK11-1.333.333", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9JK11-1.343.343", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9JK11-1.347.347", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK11-1.333.333", "start_pos": 333, "end_pos": 333, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VRSKDKEDLVCSAALHSPQE", "down_seq": "PVGKEDRVVSPEKTMDIFNE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "site_lbl": "Ser333" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9JK11-1.329.329", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9JK11-1.343.343", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9JK11-1.347.347", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK11-1.343.343", "start_pos": 343, "end_pos": 343, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CSAALHSPQESPVGKEDRVV", "down_seq": "PEKTMDIFNEMQMSVVAPVR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "site_lbl": "Ser343" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9JK11-1.329.329", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9JK11-1.333.333", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9JK11-1.347.347", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK11-1.347.347", "start_pos": 347, "end_pos": 347, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LHSPQESPVGKEDRVVSPEK", "down_seq": "MDIFNEMQMSVVAPVREEYA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "site_lbl": "Thr347" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9JK11-1.329.329", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9JK11-1.333.333", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9JK11-1.343.343", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK11-1.425.425", "start_pos": 425, "end_pos": 425, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDSLEQKSLGKDSEGRNEDA", "down_seq": "FPSTPEPVKDSSRAYITCAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "site_lbl": "Ser425" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9JK11-1.429.429", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK11-1.429.429", "start_pos": 429, "end_pos": 429, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EQKSLGKDSEGRNEDASFPS", "down_seq": "PEPVKDSSRAYITCASFTSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "site_lbl": "Thr429" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9JK11-1.425.425", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK11-1.488.488", "start_pos": 488, "end_pos": 488, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NKTDEKKIEERKAQIITEKT", "down_seq": "PKTSNPFLVAVQDSEADYVT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "site_lbl": "Ser488" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK11-1.689.689", "start_pos": 689, "end_pos": 689, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APYISIACDLIKETKLSTEP", "down_seq": "PDFSNYSEIAKFEKSVPEHA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "site_lbl": "Ser689" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK11-1.726.726", "start_pos": 726, "end_pos": 726, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PEHAELVEDSSPESEPVDLF", "down_seq": "DDSIPEVPQTQEEAVMLMKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "site_lbl": "Ser726" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK11-1.766.766", "start_pos": 766, "end_pos": 766, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESLTEVSETVAQHKEERLSA", "down_seq": "PQELGKPYLESFQPNLHSTK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "site_lbl": "Ser766" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK11-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEDIDQ", "down_seq": "SLVSSSTDSPPRPPPAFKYQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "site_lbl": "Ser7" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q9JK11-1.16.16", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK11-1.830.830", "start_pos": 830, "end_pos": 830, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NTAIYSNDDLLSSKEDKIKE", "down_seq": "ETFSDSSPIEIIDEFPTFVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "site_lbl": "Ser830" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9JK11-1.832.832", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK11-1.832.832", "start_pos": 832, "end_pos": 832, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AIYSNDDLLSSKEDKIKESE", "down_seq": "FSDSSPIEIIDEFPTFVSAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "site_lbl": "Thr832" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9JK11-1.830.830", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK11-1.855.855", "start_pos": 855, "end_pos": 855, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSSPIEIIDEFPTFVSAKDD", "down_seq": "PKLAKEYTDLEVSDKSEIAN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "site_lbl": "Ser855" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK11-1.922.922", "start_pos": 922, "end_pos": 922, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVHVSDEFSENRSSVSKASI", "down_seq": "PSNVSALEPQTEMGSIVKSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JK11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JK11" } ], "site_lbl": "Ser922" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK11-1.962.962", "start_pos": 962, "end_pos": 962, "uniprot_canonical_ac": "Q9JK11-1", "length": 1163, "uniprot_id": "RTN4_RAT", "protein_name": "Reticulon-4", "refseq_ac": "XP_006251670", "refseq_name": "reticulon-4 isoform X2", "gene_name": "Rtn4", "gene_names_uniprotkb": "Rtn4; Nogo", "gene_names_refseq": "NI-250; Nogo-A; Nogo; Rtn4; Vp20; rat NogoA; rat N", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSLTKEAEKKLPSDTEKEDR", "down_seq": "LSAVLSAELSKTSVVDLLYW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK11", "url": "https://www.uniprot.org/uniprotkb/Q9JK11" } ], "site_lbl": "Ser962" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "583", "end_pos": "583" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "169", "end_pos": "169" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "689", "end_pos": "689" }, { "start_pos": "726", "end_pos": "726" }, { "start_pos": "766", "end_pos": "766" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "830", "end_pos": "830" }, { "start_pos": "832", "end_pos": "832" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "962", "end_pos": "962" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97836-1.990.990", "start_pos": 990, "end_pos": 990, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Shank, a novel family of postsynaptic density proteins that binds to the NMDA receptor/PSD-95/GKAP complex and cortactin.", "journal": "Neuron", "date": "1999", "authors": "Naisbitt S, Kim E, Tu JC, Xiao B, Sala C, Valtschanoff J, Weinberg RJ, Worley PF, Sheng M", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "reference": [ { "type": "PubMed", "id": "10433268", "url": "https://glygen.org/publication/PubMed/10433268" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10433268", "url": "https://glygen.org/publication/PubMed/10433268", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RQNSATESAESIEIYIPEAQ", "down_seq": "RL", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Abolishes interaction with SHANK1.", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "10433268", "url": "https://glygen.org/publication/PubMed/10433268" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P97836-1.991.991", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P97836-1.992.992", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.991.991", "start_pos": 991, "end_pos": 991, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Shank, a novel family of postsynaptic density proteins that binds to the NMDA receptor/PSD-95/GKAP complex and cortactin.", "journal": "Neuron", "date": "1999", "authors": "Naisbitt S, Kim E, Tu JC, Xiao B, Sala C, Valtschanoff J, Weinberg RJ, Worley PF, Sheng M", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "reference": [ { "type": "PubMed", "id": "10433268", "url": "https://glygen.org/publication/PubMed/10433268" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10433268", "url": "https://glygen.org/publication/PubMed/10433268", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "QNSATESAESIEIYIPEAQT", "down_seq": "", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "D", "comment": "Abolishes interaction with SHANK1.", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "10433268", "url": "https://glygen.org/publication/PubMed/10433268" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P97836-1.990.990", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P97836-1.992.992", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.992.992", "start_pos": 992, "end_pos": 992, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Shank, a novel family of postsynaptic density proteins that binds to the NMDA receptor/PSD-95/GKAP complex and cortactin.", "journal": "Neuron", "date": "1999", "authors": "Naisbitt S, Kim E, Tu JC, Xiao B, Sala C, Valtschanoff J, Weinberg RJ, Worley PF, Sheng M", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "reference": [ { "type": "PubMed", "id": "10433268", "url": "https://glygen.org/publication/PubMed/10433268" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10433268", "url": "https://glygen.org/publication/PubMed/10433268", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "NSATESAESIEIYIPEAQTR", "down_seq": "", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Abolishes interaction with SHANK1.", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "10433268", "url": "https://glygen.org/publication/PubMed/10433268" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P97836-1.990.990", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P97836-1.991.991", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.169.169", "start_pos": 169, "end_pos": 169, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FTKSHSLEGASKGGVNGGKA", "down_seq": "PDGSQTVRYGKRSKSKERRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "site_lbl": "Ser169" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97836-1.362.362", "start_pos": 362, "end_pos": 362, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EIPCRRMRSGSYIKAMGDED", "down_seq": "GDSDTSPKPSPKVAARRESY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "site_lbl": "Ser362" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P97836-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P97836-1.368.368", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P97836-1.372.372", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.365.365", "start_pos": 365, "end_pos": 365, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CRRMRSGSYIKAMGDEDSGD", "down_seq": "DTSPKPSPKVAARRESYLKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "site_lbl": "Ser365" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P97836-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P97836-1.368.368", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P97836-1.372.372", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.368.368", "start_pos": 368, "end_pos": 368, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MRSGSYIKAMGDEDSGDSDT", "down_seq": "PKPSPKVAARRESYLKATQP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "site_lbl": "Ser368" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P97836-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P97836-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P97836-1.372.372", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97836-1.372.372", "start_pos": 372, "end_pos": 372, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SYIKAMGDEDSGDSDTSPKP", "down_seq": "PKVAARRESYLKATQPSLTE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "site_lbl": "Ser372" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P97836-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P97836-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P97836-1.368.368", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P97836-1.389.389", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97836-1.389.389", "start_pos": 389, "end_pos": 389, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PKPSPKVAARRESYLKATQP", "down_seq": "LTELTTLKISNEHSPKLQIR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "site_lbl": "Ser389" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P97836-1.372.372", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.418.418", "start_pos": 418, "end_pos": 418, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISNEHSPKLQIRSHSYLRAV", "down_seq": "EVSINRSLDSLDPAGLLTSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "site_lbl": "Ser418" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P97836-1.421.421", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P97836-1.425.425", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P97836-1.428.428", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P97836-1.437.437", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.421.421", "start_pos": 421, "end_pos": 421, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EHSPKLQIRSHSYLRAVSEV", "down_seq": "INRSLDSLDPAGLLTSPKFR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "site_lbl": "Ser421" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P97836-1.418.418", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P97836-1.425.425", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P97836-1.428.428", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P97836-1.437.437", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.425.425", "start_pos": 425, "end_pos": 425, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLQIRSHSYLRAVSEVSINR", "down_seq": "LDSLDPAGLLTSPKFRSRNE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "site_lbl": "Ser425" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P97836-1.418.418", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P97836-1.421.421", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P97836-1.428.428", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P97836-1.437.437", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.428.428", "start_pos": 428, "end_pos": 428, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IRSHSYLRAVSEVSINRSLD", "down_seq": "LDPAGLLTSPKFRSRNESYM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "site_lbl": "Ser428" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P97836-1.418.418", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P97836-1.421.421", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P97836-1.425.425", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P97836-1.437.437", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.437.437", "start_pos": 437, "end_pos": 437, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VSEVSINRSLDSLDPAGLLT", "down_seq": "PKFRSRNESYMRAMSTISQV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "site_lbl": "Ser437" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P97836-1.418.418", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P97836-1.421.421", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P97836-1.425.425", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P97836-1.428.428", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.509.509", "start_pos": 509, "end_pos": 509, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MPGCFRMRSHSYVRAIEKGC", "down_seq": "QDDECVSLRSSSPPRTTTTV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "site_lbl": "Ser509" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P97836-1.516.516", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.516.516", "start_pos": 516, "end_pos": 516, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSHSYVRAIEKGCSQDDECV", "down_seq": "LRSSSPPRTTTTVRTIQSST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "site_lbl": "Ser516" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P97836-1.509.509", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97836-1.578.578", "start_pos": 578, "end_pos": 578, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPPVPPRTTTKPFISITAQS", "down_seq": "TESAQDAYMDGQGQRGDMIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "site_lbl": "Ser578" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P97836-1.579.579", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P97836-1.581.581", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97836-1.579.579", "start_pos": 579, "end_pos": 579, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PPVPPRTTTKPFISITAQSS", "down_seq": "ESAQDAYMDGQGQRGDMISQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "site_lbl": "Thr579" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P97836-1.578.578", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P97836-1.581.581", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97836-1.581.581", "start_pos": 581, "end_pos": 581, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VPPRTTTKPFISITAQSSTE", "down_seq": "AQDAYMDGQGQRGDMISQSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "site_lbl": "Ser581" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P97836-1.578.578", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P97836-1.579.579", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97836-1.605.605", "start_pos": 605, "end_pos": 605, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AYMDGQGQRGDMISQSGLSN", "down_seq": "TESLDSMKALTAAIEAANAQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "site_lbl": "Ser605" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P97836-1.606.606", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P97836-1.608.608", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P97836-1.611.611", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.606.606", "start_pos": 606, "end_pos": 606, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YMDGQGQRGDMISQSGLSNS", "down_seq": "ESLDSMKALTAAIEAANAQI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "site_lbl": "Thr606" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P97836-1.605.605", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P97836-1.608.608", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P97836-1.611.611", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97836-1.608.608", "start_pos": 608, "end_pos": 608, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGQGQRGDMISQSGLSNSTE", "down_seq": "LDSMKALTAAIEAANAQIHG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "site_lbl": "Ser608" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P97836-1.605.605", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P97836-1.606.606", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P97836-1.611.611", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.611.611", "start_pos": 611, "end_pos": 611, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GQRGDMISQSGLSNSTESLD", "down_seq": "MKALTAAIEAANAQIHGPAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "site_lbl": "Ser611" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P97836-1.605.605", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P97836-1.606.606", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P97836-1.608.608", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97836-1.947.947", "start_pos": 947, "end_pos": 947, "uniprot_canonical_ac": "P97836-1", "length": 992, "uniprot_id": "DLGP1_RAT", "protein_name": "Disks large-associated protein 1", "refseq_ac": "NP_001291216", "refseq_name": "disks large-associated protein 1 isoform 2", "gene_name": "Dlgap1", "gene_names_uniprotkb": "Dlgap1; Gkap", "gene_names_refseq": "DAP-1; Dlgap1; GKAP/SAPAP1; Gkap; SAPAP1; rGKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APPPVPKKPAKGPAPLIRER", "down_seq": "LESSQRQEARKRLMAAKRAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97836", "url": "https://www.uniprot.org/uniprotkb/P97836" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97836", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97836" } ], "site_lbl": "Ser947" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "990", "end_pos": "990" }, { "start_pos": "991", "end_pos": "991" }, { "start_pos": "992", "end_pos": "992" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "169", "end_pos": "169" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "509", "end_pos": "509" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "579", "end_pos": "579" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "605", "end_pos": "605" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "608", "end_pos": "608" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "947", "end_pos": "947" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5I6B8-1.471.471", "start_pos": 471, "end_pos": 471, "uniprot_canonical_ac": "Q5I6B8-1", "length": 688, "uniprot_id": "PI51C_RAT", "protein_name": "Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma", "refseq_ac": "NP_001029142", "refseq_name": "phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform b", "gene_name": "Pip5k1c", "gene_names_uniprotkb": "Pip5k1c", "gene_names_refseq": "Pip5k1c", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KSSPSKKGRGALLAVKPLGP", "down_seq": "AAFSASQIPSEREDVQYDLR", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr471", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "471", "end_pos": "471" }, { "start_pos": "656", "end_pos": "656" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "316", "end_pos": "316" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "554", "end_pos": "554" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "672", "end_pos": "672" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "688", "end_pos": "688" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5I6B8-1.656.656", "start_pos": 656, "end_pos": 656, "uniprot_canonical_ac": "Q5I6B8-1", "length": 688, "uniprot_id": "PI51C_RAT", "protein_name": "Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma", "refseq_ac": "NP_001029142", "refseq_name": "phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform b", "gene_name": "Pip5k1c", "gene_names_uniprotkb": "Pip5k1c", "gene_names_refseq": "Pip5k1c", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FFAHGRYWLFSPRRRRLRAV", "down_seq": "PSHTGAPTDGRSWVYSPLHY", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr656", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "471", "end_pos": "471" }, { "start_pos": "656", "end_pos": "656" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "316", "end_pos": "316" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "554", "end_pos": "554" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "672", "end_pos": "672" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "688", "end_pos": "688" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q5I6B8-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q5I6B8-1.672.672", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5I6B8-1.188.188", "start_pos": 188, "end_pos": 188, "uniprot_canonical_ac": "Q5I6B8-1", "length": 688, "uniprot_id": "PI51C_RAT", "protein_name": "Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma", "refseq_ac": "NP_001029142", "refseq_name": "phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform b", "gene_name": "Pip5k1c", "gene_names_uniprotkb": "Pip5k1c", "gene_names_refseq": "Pip5k1c", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "A novel neuronal-specific splice variant of Type I phosphatidylinositol 4-phosphate 5-kinase isoform gamma.", "journal": "The Biochemical journal", "date": "2004", "authors": "Giudici ML, Emson PC, Irvine RF", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "reference": [ { "type": "PubMed", "id": "14741049", "url": "https://glygen.org/publication/PubMed/14741049" } ] } ], "crossref": [ { "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14741049", "url": "https://glygen.org/publication/PubMed/14741049", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "SNPGASGSVFYVTSDDEFII", "down_seq": "TVMHKEAEFLQKLLPGYYMN", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Reduces activity by over 99%.", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" }, { "database": "PubMed", "id": "14741049", "url": "https://glygen.org/publication/PubMed/14741049" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "471", "end_pos": "471" }, { "start_pos": "656", "end_pos": "656" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "316", "end_pos": "316" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "554", "end_pos": "554" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "672", "end_pos": "672" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "688", "end_pos": "688" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5I6B8-1.316.316", "start_pos": 316, "end_pos": 316, "uniprot_canonical_ac": "Q5I6B8-1", "length": 688, "uniprot_id": "PI51C_RAT", "protein_name": "Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma", "refseq_ac": "NP_001029142", "refseq_name": "phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform b", "gene_name": "Pip5k1c", "gene_names_uniprotkb": "Pip5k1c", "gene_names_refseq": "Pip5k1c", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "A novel neuronal-specific splice variant of Type I phosphatidylinositol 4-phosphate 5-kinase isoform gamma.", "journal": "The Biochemical journal", "date": "2004", "authors": "Giudici ML, Emson PC, Irvine RF", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "reference": [ { "type": "PubMed", "id": "14741049", "url": "https://glygen.org/publication/PubMed/14741049" } ] } ], "crossref": [ { "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14741049", "url": "https://glygen.org/publication/PubMed/14741049", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "GALVKTLQRDCLVLESFKIM", "down_seq": "YSLLLGVHNIDQQERERQAE", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "K", "comment": "Loss of kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" }, { "database": "PubMed", "id": "14741049", "url": "https://glygen.org/publication/PubMed/14741049" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "471", "end_pos": "471" }, { "start_pos": "656", "end_pos": "656" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "316", "end_pos": "316" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "554", "end_pos": "554" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "672", "end_pos": "672" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "688", "end_pos": "688" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5I6B8-1.554.554", "start_pos": 554, "end_pos": 554, "uniprot_canonical_ac": "Q5I6B8-1", "length": 688, "uniprot_id": "PI51C_RAT", "protein_name": "Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma", "refseq_ac": "NP_001029142", "refseq_name": "phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform b", "gene_name": "Pip5k1c", "gene_names_uniprotkb": "Pip5k1c", "gene_names_refseq": "Pip5k1c", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" }, { "database": "iPTMnet", "id": "Q5I6B8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5I6B8" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5I6B8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5I6B8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IPERSPSDTSEQPRYRRRTQ", "down_seq": "SGQDGRPQEELHAEDLQKIT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5I6B8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5I6B8" } ], "site_lbl": "Ser554" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "471", "end_pos": "471" }, { "start_pos": "656", "end_pos": "656" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "316", "end_pos": "316" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "554", "end_pos": "554" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "672", "end_pos": "672" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "688", "end_pos": "688" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5I6B8-1.635.635", "start_pos": 635, "end_pos": 635, "uniprot_canonical_ac": "Q5I6B8-1", "length": 688, "uniprot_id": "PI51C_RAT", "protein_name": "Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma", "refseq_ac": "NP_001029142", "refseq_name": "phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform b", "gene_name": "Pip5k1c", "gene_names_uniprotkb": "Pip5k1c", "gene_names_refseq": "Pip5k1c", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "QASEPASQASDEEDAPSTDI", "down_seq": "FFAHGRYWLFSPRRRRLRAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by EGFR", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "site_lbl": "Tyr635" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "471", "end_pos": "471" }, { "start_pos": "656", "end_pos": "656" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "316", "end_pos": "316" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "554", "end_pos": "554" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "672", "end_pos": "672" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "688", "end_pos": "688" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5I6B8-1.671.671", "start_pos": 671, "end_pos": 671, "uniprot_canonical_ac": "Q5I6B8-1", "length": 688, "uniprot_id": "PI51C_RAT", "protein_name": "Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma", "refseq_ac": "NP_001029142", "refseq_name": "phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform b", "gene_name": "Pip5k1c", "gene_names_uniprotkb": "Pip5k1c", "gene_names_refseq": "Pip5k1c", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "RLRAVTPSHTGAPTDGRSWV", "down_seq": "SPLHYSARPASDGESDT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by CSK", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "site_lbl": "Tyr671" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "471", "end_pos": "471" }, { "start_pos": "656", "end_pos": "656" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "316", "end_pos": "316" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "554", "end_pos": "554" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "672", "end_pos": "672" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "688", "end_pos": "688" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q5I6B8-1.656.656", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q5I6B8-1.672.672", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q5I6B8-1.682.682", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q5I6B8-1.686.686", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q5I6B8-1.688.688", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5I6B8-1.672.672", "start_pos": 672, "end_pos": 672, "uniprot_canonical_ac": "Q5I6B8-1", "length": 688, "uniprot_id": "PI51C_RAT", "protein_name": "Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma", "refseq_ac": "NP_001029142", "refseq_name": "phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform b", "gene_name": "Pip5k1c", "gene_names_uniprotkb": "Pip5k1c", "gene_names_refseq": "Pip5k1c", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRAVTPSHTGAPTDGRSWVY", "down_seq": "PLHYSARPASDGESDT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CDK5, MAPK1 and CDK1", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "site_lbl": "Ser672" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "471", "end_pos": "471" }, { "start_pos": "656", "end_pos": "656" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "316", "end_pos": "316" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "554", "end_pos": "554" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "672", "end_pos": "672" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "688", "end_pos": "688" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q5I6B8-1.656.656", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q5I6B8-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q5I6B8-1.682.682", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q5I6B8-1.686.686", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q5I6B8-1.688.688", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5I6B8-1.682.682", "start_pos": 682, "end_pos": 682, "uniprot_canonical_ac": "Q5I6B8-1", "length": 688, "uniprot_id": "PI51C_RAT", "protein_name": "Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma", "refseq_ac": "NP_001029142", "refseq_name": "phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform b", "gene_name": "Pip5k1c", "gene_names_uniprotkb": "Pip5k1c", "gene_names_refseq": "Pip5k1c", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" }, { "database": "iPTMnet", "id": "Q5I6B8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5I6B8" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5I6B8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5I6B8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APTDGRSWVYSPLHYSARPA", "down_seq": "DGESDT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5I6B8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5I6B8" } ], "site_lbl": "Ser682" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "471", "end_pos": "471" }, { "start_pos": "656", "end_pos": "656" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "316", "end_pos": "316" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "554", "end_pos": "554" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "672", "end_pos": "672" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "688", "end_pos": "688" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q5I6B8-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q5I6B8-1.672.672", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q5I6B8-1.686.686", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q5I6B8-1.688.688", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5I6B8-1.686.686", "start_pos": 686, "end_pos": 686, "uniprot_canonical_ac": "Q5I6B8-1", "length": 688, "uniprot_id": "PI51C_RAT", "protein_name": "Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma", "refseq_ac": "NP_001029142", "refseq_name": "phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform b", "gene_name": "Pip5k1c", "gene_names_uniprotkb": "Pip5k1c", "gene_names_refseq": "Pip5k1c", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" }, { "database": "iPTMnet", "id": "Q5I6B8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5I6B8" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5I6B8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5I6B8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRSWVYSPLHYSARPASDGE", "down_seq": "DT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5I6B8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5I6B8" } ], "site_lbl": "Ser686" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "471", "end_pos": "471" }, { "start_pos": "656", "end_pos": "656" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "316", "end_pos": "316" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "554", "end_pos": "554" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "672", "end_pos": "672" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "688", "end_pos": "688" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q5I6B8-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q5I6B8-1.672.672", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q5I6B8-1.682.682", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q5I6B8-1.688.688", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5I6B8-1.688.688", "start_pos": 688, "end_pos": 688, "uniprot_canonical_ac": "Q5I6B8-1", "length": 688, "uniprot_id": "PI51C_RAT", "protein_name": "Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma", "refseq_ac": "NP_001029142", "refseq_name": "phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform b", "gene_name": "Pip5k1c", "gene_names_uniprotkb": "Pip5k1c", "gene_names_refseq": "Pip5k1c", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" }, { "database": "iPTMnet", "id": "Q5I6B8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5I6B8" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5I6B8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5I6B8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SWVYSPLHYSARPASDGESD", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5I6B8", "url": "https://www.uniprot.org/uniprotkb/Q5I6B8" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5I6B8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5I6B8" } ], "site_lbl": "Thr688" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "471", "end_pos": "471" }, { "start_pos": "656", "end_pos": "656" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "316", "end_pos": "316" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "554", "end_pos": "554" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "672", "end_pos": "672" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "688", "end_pos": "688" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q5I6B8-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q5I6B8-1.672.672", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q5I6B8-1.682.682", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q5I6B8-1.686.686", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.177.177", "start_pos": 177, "end_pos": 177, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ETPVVSATIVGTLARPGPEP", "down_seq": "PATDERDRVQKKTSTKWVNK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr177", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P30427", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P30427" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P30427", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P30427", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P30427" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.1050.1050", "start_pos": 1050, "end_pos": 1050, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MKSLLAWQSLNRDIQLIRSW", "down_seq": "LVTFRTLKPEEQRQALRNLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Ser1050" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.1438.1438", "start_pos": 1438, "end_pos": 1438, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AIKDYELQLITYKAQLEPVA", "down_seq": "PAKKPKVQSGSESVIQEYVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Ser1438" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.1724.1724", "start_pos": 1724, "end_pos": 1724, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QVALETAQRSAEVELQSKRP", "down_seq": "FAEKTAQLERTLQEEHVTVT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser1724" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.2634.2634", "start_pos": 2634, "end_pos": 2634, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEMQTVQQEQILQETQALQK", "down_seq": "FLSEKDSLLQRERFIEQEKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser2634" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.2777.2777", "start_pos": 2777, "end_pos": 2777, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TSQAAATKALPNGRDALDGP", "down_seq": "MEAEPEYTFEGLRQKVPAQQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Ser2777" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P30427-1.2784.2784", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.2784.2784", "start_pos": 2784, "end_pos": 2784, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KALPNGRDALDGPSMEAEPE", "down_seq": "TFEGLRQKVPAQQLQEAGIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Tyr2784" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P30427-1.2777.2777", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.2805.2805", "start_pos": 2805, "end_pos": 2805, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TFEGLRQKVPAQQLQEAGIL", "down_seq": "MEELQRLTQGHTTVAELTQR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser2805" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.2889.2889", "start_pos": 2889, "end_pos": 2889, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LLEAQAASGFLLDPVRNRRL", "down_seq": "VNEAVKEGVVGPELHHKLLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Thr2889" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.3036.3036", "start_pos": 3036, "end_pos": 3036, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ETGLRLLPLTDKAAKGGELV", "down_seq": "TDTEARDVFEKATVSAPFGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Tyr3036" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.3365.3365", "start_pos": 3365, "end_pos": 3365, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TGLSLLPLSEKAVRARQEEV", "down_seq": "SELQARETLEKAKVEVPVGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Tyr3365" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.3583.3583", "start_pos": 3583, "end_pos": 3583, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HEKLLSAEKAVTGYKDPYSG", "down_seq": "TISLFQAMKKGLVLRDHAIR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Ser3583" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.3788.3788", "start_pos": 3788, "end_pos": 3788, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KTEIIRQQNLASYDYVRRRL", "down_seq": "AEDLYEARIISLETYNLFRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Thr3788" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P30427-1.3793.3793", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.3793.3793", "start_pos": 3793, "end_pos": 3793, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "RQQNLASYDYVRRRLTAEDL", "down_seq": "EARIISLETYNLFREGTKSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Tyr3793" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P30427-1.3788.3788", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4033.4033", "start_pos": 4033, "end_pos": 4033, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] }, { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MLLPLSDARKLTFRGLRKQI", "down_seq": "VEELVRSQVMDEATALQLQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Thr4033" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.4057.4057", "start_pos": 4057, "end_pos": 4057, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVRSQVMDEATALQLQEGLT", "down_seq": "IEEVTKNLQKFLEGTSCIAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser4057" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4385.4385", "start_pos": 4385, "end_pos": 4385, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GTLSITEFADMLSGNAGGFR", "down_seq": "RSSSVGSSSSYPISSAVPRT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser4385" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P30427-1.4387.4387", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P30427-1.4388.4388", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P30427-1.4389.4389", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P30427-1.4392.4392", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P30427-1.4393.4393", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P30427-1.4394.4394", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P30427-1.4395.4395", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P30427-1.4396.4396", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P30427-1.4399.4399", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4387.4387", "start_pos": 4387, "end_pos": 4387, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSITEFADMLSGNAGGFRSR", "down_seq": "SSVGSSSSYPISSAVPRTQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Ser4387" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P30427-1.4385.4385", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P30427-1.4388.4388", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P30427-1.4389.4389", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P30427-1.4392.4392", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P30427-1.4393.4393", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P30427-1.4394.4394", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P30427-1.4395.4395", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P30427-1.4396.4396", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P30427-1.4399.4399", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.4388.4388", "start_pos": 4388, "end_pos": 4388, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SITEFADMLSGNAGGFRSRS", "down_seq": "SVGSSSSYPISSAVPRTQLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Ser4388" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P30427-1.4385.4385", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P30427-1.4387.4387", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P30427-1.4389.4389", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P30427-1.4392.4392", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P30427-1.4393.4393", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P30427-1.4394.4394", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P30427-1.4395.4395", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P30427-1.4396.4396", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P30427-1.4399.4399", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.4389.4389", "start_pos": 4389, "end_pos": 4389, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] }, { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ITEFADMLSGNAGGFRSRSS", "down_seq": "VGSSSSYPISSAVPRTQLAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Ser4389" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P30427-1.4385.4385", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P30427-1.4387.4387", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P30427-1.4388.4388", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P30427-1.4392.4392", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P30427-1.4393.4393", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P30427-1.4394.4394", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P30427-1.4395.4395", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P30427-1.4396.4396", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P30427-1.4399.4399", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P30427-1.4409.4409", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.4392.4392", "start_pos": 4392, "end_pos": 4392, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] }, { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FADMLSGNAGGFRSRSSSVG", "down_seq": "SSSYPISSAVPRTQLASWSD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Ser4392" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P30427-1.4385.4385", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P30427-1.4387.4387", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P30427-1.4388.4388", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P30427-1.4389.4389", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P30427-1.4393.4393", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P30427-1.4394.4394", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P30427-1.4395.4395", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P30427-1.4396.4396", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P30427-1.4399.4399", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P30427-1.4409.4409", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.4393.4393", "start_pos": 4393, "end_pos": 4393, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ADMLSGNAGGFRSRSSSVGS", "down_seq": "SSYPISSAVPRTQLASWSDP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser4393" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P30427-1.4385.4385", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P30427-1.4387.4387", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P30427-1.4388.4388", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P30427-1.4389.4389", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P30427-1.4392.4392", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P30427-1.4394.4394", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P30427-1.4395.4395", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P30427-1.4396.4396", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P30427-1.4399.4399", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P30427-1.4409.4409", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4394.4394", "start_pos": 4394, "end_pos": 4394, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DMLSGNAGGFRSRSSSVGSS", "down_seq": "SYPISSAVPRTQLASWSDPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Ser4394" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P30427-1.4385.4385", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P30427-1.4387.4387", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P30427-1.4388.4388", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P30427-1.4389.4389", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P30427-1.4392.4392", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P30427-1.4393.4393", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P30427-1.4395.4395", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P30427-1.4396.4396", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P30427-1.4399.4399", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P30427-1.4409.4409", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P30427-1.4414.4414", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.4395.4395", "start_pos": 4395, "end_pos": 4395, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MLSGNAGGFRSRSSSVGSSS", "down_seq": "YPISSAVPRTQLASWSDPTE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser4395" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P30427-1.4385.4385", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P30427-1.4387.4387", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P30427-1.4388.4388", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P30427-1.4389.4389", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P30427-1.4392.4392", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P30427-1.4393.4393", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P30427-1.4394.4394", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P30427-1.4396.4396", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P30427-1.4399.4399", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P30427-1.4409.4409", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P30427-1.4414.4414", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4396.4396", "start_pos": 4396, "end_pos": 4396, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LSGNAGGFRSRSSSVGSSSS", "down_seq": "PISSAVPRTQLASWSDPTEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Tyr4396" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P30427-1.4385.4385", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P30427-1.4387.4387", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P30427-1.4388.4388", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P30427-1.4389.4389", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P30427-1.4392.4392", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P30427-1.4393.4393", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P30427-1.4394.4394", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P30427-1.4395.4395", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P30427-1.4399.4399", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P30427-1.4409.4409", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P30427-1.4414.4414", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4399.4399", "start_pos": 4399, "end_pos": 4399, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NAGGFRSRSSSVGSSSSYPI", "down_seq": "SAVPRTQLASWSDPTEETGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser4399" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P30427-1.4385.4385", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P30427-1.4387.4387", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P30427-1.4388.4388", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P30427-1.4389.4389", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P30427-1.4392.4392", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P30427-1.4393.4393", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P30427-1.4394.4394", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P30427-1.4395.4395", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P30427-1.4396.4396", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P30427-1.4409.4409", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P30427-1.4414.4414", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4409.4409", "start_pos": 4409, "end_pos": 4409, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVGSSSSYPISSAVPRTQLA", "down_seq": "WSDPTEETGPVAGILDTETL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Ser4409" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P30427-1.4389.4389", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P30427-1.4392.4392", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P30427-1.4393.4393", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P30427-1.4394.4394", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P30427-1.4395.4395", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P30427-1.4396.4396", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P30427-1.4399.4399", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P30427-1.4414.4414", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.4414.4414", "start_pos": 4414, "end_pos": 4414, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSYPISSAVPRTQLASWSDP", "down_seq": "EETGPVAGILDTETLEKVSI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Thr4414" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P30427-1.4394.4394", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "P30427-1.4395.4395", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "P30427-1.4396.4396", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P30427-1.4399.4399", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P30427-1.4409.4409", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4542.4542", "start_pos": 4542, "end_pos": 4542, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EAGQRFLEVQYLTGGLIEPD", "down_seq": "PGRVSLDEALQRGTVDARTA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by CDK1", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Thr4542" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4610.4610", "start_pos": 4610, "end_pos": 4610, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LDRSMVEEGTGLRLLEAAAQ", "down_seq": "SKGYYSPYSVSGSGSTAGSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser4610" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "P30427-1.4616.4616", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P30427-1.4618.4618", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P30427-1.4619.4619", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P30427-1.4621.4621", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P30427-1.4625.4625", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P30427-1.4626.4626", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P30427-1.4629.4629", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4616.4616", "start_pos": 4616, "end_pos": 4616, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEGTGLRLLEAAAQSSKGYY", "down_seq": "PYSVSGSGSTAGSRTGSRTG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Ser4616" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P30427-1.4610.4610", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P30427-1.4618.4618", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P30427-1.4619.4619", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P30427-1.4621.4621", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P30427-1.4625.4625", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P30427-1.4626.4626", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P30427-1.4629.4629", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.4618.4618", "start_pos": 4618, "end_pos": 4618, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GTGLRLLEAAAQSSKGYYSP", "down_seq": "SVSGSGSTAGSRTGSRTGSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Tyr4618" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P30427-1.4610.4610", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P30427-1.4616.4616", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P30427-1.4619.4619", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P30427-1.4621.4621", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P30427-1.4625.4625", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P30427-1.4626.4626", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P30427-1.4629.4629", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4619.4619", "start_pos": 4619, "end_pos": 4619, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TGLRLLEAAAQSSKGYYSPY", "down_seq": "VSGSGSTAGSRTGSRTGSRA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser4619" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P30427-1.4610.4610", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P30427-1.4616.4616", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P30427-1.4618.4618", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P30427-1.4621.4621", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P30427-1.4625.4625", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P30427-1.4626.4626", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P30427-1.4629.4629", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4621.4621", "start_pos": 4621, "end_pos": 4621, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRLLEAAAQSSKGYYSPYSV", "down_seq": "GSGSTAGSRTGSRTGSRAGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser4621" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P30427-1.4610.4610", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P30427-1.4616.4616", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P30427-1.4618.4618", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P30427-1.4619.4619", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P30427-1.4625.4625", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P30427-1.4626.4626", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P30427-1.4629.4629", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4625.4625", "start_pos": 4625, "end_pos": 4625, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAAAQSSKGYYSPYSVSGSG", "down_seq": "TAGSRTGSRTGSRAGSRRGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser4625" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P30427-1.4610.4610", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P30427-1.4616.4616", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P30427-1.4618.4618", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P30427-1.4619.4619", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P30427-1.4621.4621", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P30427-1.4626.4626", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P30427-1.4629.4629", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P30427-1.4645.4645", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4626.4626", "start_pos": 4626, "end_pos": 4626, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AAAQSSKGYYSPYSVSGSGS", "down_seq": "AGSRTGSRTGSRAGSRRGSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Thr4626" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P30427-1.4610.4610", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P30427-1.4616.4616", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P30427-1.4618.4618", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P30427-1.4619.4619", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P30427-1.4621.4621", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P30427-1.4625.4625", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P30427-1.4629.4629", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P30427-1.4645.4645", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4629.4629", "start_pos": 4629, "end_pos": 4629, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QSSKGYYSPYSVSGSGSTAG", "down_seq": "RTGSRTGSRAGSRRGSFDAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Ser4629" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P30427-1.4610.4610", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P30427-1.4616.4616", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P30427-1.4618.4618", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P30427-1.4619.4619", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P30427-1.4621.4621", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P30427-1.4625.4625", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P30427-1.4626.4626", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P30427-1.4645.4645", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.4645.4645", "start_pos": 4645, "end_pos": 4645, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STAGSRTGSRTGSRAGSRRG", "down_seq": "FDATGSGFSMTFSSSSYSSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser4645" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P30427-1.4625.4625", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "P30427-1.4626.4626", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P30427-1.4629.4629", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.4678.4678", "start_pos": 4678, "end_pos": 4678, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSSYSSSGYGRRYASGPSA", "down_seq": "LGGPESAVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Ser4678" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30427-1.723.723", "start_pos": 723, "end_pos": 723, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QSIEEFRAKIERARNDESQL", "down_seq": "PATRGAYRDCLGRLDLQYAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P30427", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P30427" } ], "site_lbl": "Ser723" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P30427-1.818.818", "start_pos": 818, "end_pos": 818, "uniprot_canonical_ac": "P30427-1", "length": 4687, "uniprot_id": "PLEC_RAT", "protein_name": "Plectin", "refseq_ac": "", "refseq_name": "", "gene_name": "Plec", "gene_names_uniprotkb": "Plec; Plec1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YSALMRELEMKEKKIKEIQN", "down_seq": "GDRLLREDHPARPTVESFQA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P30427", "url": "https://www.uniprot.org/uniprotkb/P30427" } ], "site_lbl": "Thr818" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1050", "end_pos": "1050" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "2634", "end_pos": "2634" }, { "start_pos": "2777", "end_pos": "2777" }, { "start_pos": "2784", "end_pos": "2784" }, { "start_pos": "2805", "end_pos": "2805" }, { "start_pos": "2889", "end_pos": "2889" }, { "start_pos": "3036", "end_pos": "3036" }, { "start_pos": "3365", "end_pos": "3365" }, { "start_pos": "3583", "end_pos": "3583" }, { "start_pos": "3788", "end_pos": "3788" }, { "start_pos": "3793", "end_pos": "3793" }, { "start_pos": "4033", "end_pos": "4033" }, { "start_pos": "4057", "end_pos": "4057" }, { "start_pos": "4385", "end_pos": "4385" }, { "start_pos": "4387", "end_pos": "4387" }, { "start_pos": "4388", "end_pos": "4388" }, { "start_pos": "4389", "end_pos": "4389" }, { "start_pos": "4392", "end_pos": "4392" }, { "start_pos": "4393", "end_pos": "4393" }, { "start_pos": "4394", "end_pos": "4394" }, { "start_pos": "4395", "end_pos": "4395" }, { "start_pos": "4396", "end_pos": "4396" }, { "start_pos": "4399", "end_pos": "4399" }, { "start_pos": "4409", "end_pos": "4409" }, { "start_pos": "4414", "end_pos": "4414" }, { "start_pos": "4542", "end_pos": "4542" }, { "start_pos": "4610", "end_pos": "4610" }, { "start_pos": "4616", "end_pos": "4616" }, { "start_pos": "4618", "end_pos": "4618" }, { "start_pos": "4619", "end_pos": "4619" }, { "start_pos": "4621", "end_pos": "4621" }, { "start_pos": "4625", "end_pos": "4625" }, { "start_pos": "4626", "end_pos": "4626" }, { "start_pos": "4629", "end_pos": "4629" }, { "start_pos": "4645", "end_pos": "4645" }, { "start_pos": "4678", "end_pos": "4678" }, { "start_pos": "723", "end_pos": "723" }, { "start_pos": "818", "end_pos": "818" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62936-1.68.68", "start_pos": 68, "end_pos": 68, "uniprot_canonical_ac": "Q62936-1", "length": 849, "uniprot_id": "DLG3_RAT", "protein_name": "Disks large homolog 3", "refseq_ac": "NP_113827", "refseq_name": "disks large homolog 3", "gene_name": "Dlg3", "gene_names_uniprotkb": "Dlg3; Dlgh3", "gene_names_refseq": "Dlg3; Dlgh3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62936", "url": "https://www.uniprot.org/uniprotkb/Q62936" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSGYGGYSSQTLPSQAGATP", "down_seq": "PRTKAKLIPTGRDVGPVPPK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr68", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "68", "end_pos": "68" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "157", "end_pos": "157" }, { "start_pos": "705", "end_pos": "705" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62936-1.157.157", "start_pos": 157, "end_pos": 157, "uniprot_canonical_ac": "Q62936-1", "length": 849, "uniprot_id": "DLG3_RAT", "protein_name": "Disks large homolog 3", "refseq_ac": "NP_113827", "refseq_name": "disks large homolog 3", "gene_name": "Dlg3", "gene_names_uniprotkb": "Dlg3; Dlgh3", "gene_names_refseq": "Dlg3; Dlgh3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62936", "url": "https://www.uniprot.org/uniprotkb/Q62936" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62936", "url": "https://www.uniprot.org/uniprotkb/Q62936", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVNGSDGMFKYEEIVLERGN", "down_seq": "GLGFSIAGGIDNPHVPDDPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62936", "url": "https://www.uniprot.org/uniprotkb/Q62936" } ], "site_lbl": "Ser157" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "68", "end_pos": "68" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "157", "end_pos": "157" }, { "start_pos": "705", "end_pos": "705" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62936-1.705.705", "start_pos": 705, "end_pos": 705, "uniprot_canonical_ac": "Q62936-1", "length": 849, "uniprot_id": "DLG3_RAT", "protein_name": "Disks large homolog 3", "refseq_ac": "NP_113827", "refseq_name": "disks large homolog 3", "gene_name": "Dlg3", "gene_names_uniprotkb": "Dlg3; Dlgh3", "gene_names_refseq": "Dlg3; Dlgh3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62936", "url": "https://www.uniprot.org/uniprotkb/Q62936" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62936", "url": "https://www.uniprot.org/uniprotkb/Q62936", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GSCVPHTTRPRRDNEVDGQD", "down_seq": "HFVVSREQMEKDIQDNKFIE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q62936", "url": "https://www.uniprot.org/uniprotkb/Q62936" } ], "site_lbl": "Tyr705" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "68", "end_pos": "68" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "157", "end_pos": "157" }, { "start_pos": "705", "end_pos": "705" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QYF3-1.602.602", "start_pos": 602, "end_pos": 602, "uniprot_canonical_ac": "Q9QYF3-1", "length": 1828, "uniprot_id": "MYO5A_RAT", "protein_name": "Unconventional myosin-Va", "refseq_ac": "NP_071514", "refseq_name": "unconventional myosin-Va isoform 2", "gene_name": "Myo5a", "gene_names_uniprotkb": "Myo5a", "gene_names_refseq": "Dop; Myh12; Myo5a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSKFKMLPELFQDDEKAISP", "down_seq": "SATSSGRTPLTRVPVKPTKG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr602", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "602", "end_pos": "602" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "1425", "end_pos": "1425" }, { "start_pos": "1625", "end_pos": "1625" }, { "start_pos": "1733", "end_pos": "1733" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9QYF3-1.600.600", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QYF3-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9QYF3-1", "length": 1828, "uniprot_id": "MYO5A_RAT", "protein_name": "Unconventional myosin-Va", "refseq_ac": "NP_071514", "refseq_name": "unconventional myosin-Va isoform 2", "gene_name": "Myo5a", "gene_names_uniprotkb": "Myo5a", "gene_names_refseq": "Dop; Myh12; Myo5a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9QYF3", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9QYF3" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] } ], "crossref": [ { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9QYF3", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9QYF3", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "Q9QYF3", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9QYF3" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "602", "end_pos": "602" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "1425", "end_pos": "1425" }, { "start_pos": "1625", "end_pos": "1625" }, { "start_pos": "1733", "end_pos": "1733" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9QYF3-1.1032.1032", "start_pos": 1032, "end_pos": 1032, "uniprot_canonical_ac": "Q9QYF3-1", "length": 1828, "uniprot_id": "MYO5A_RAT", "protein_name": "Unconventional myosin-Va", "refseq_ac": "NP_071514", "refseq_name": "unconventional myosin-Va isoform 2", "gene_name": "Myo5a", "gene_names_uniprotkb": "Myo5a", "gene_names_refseq": "Dop; Myh12; Myo5a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" }, { "database": "iPTMnet", "id": "Q9QYF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QYF3" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9QYF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QYF3", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RADKYKQETEQLVSNLKEEN", "down_seq": "LLKQEKETLNHLMVEQAKEM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q9QYF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QYF3" } ], "site_lbl": "Thr1032" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "602", "end_pos": "602" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "1425", "end_pos": "1425" }, { "start_pos": "1625", "end_pos": "1625" }, { "start_pos": "1733", "end_pos": "1733" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9QYF3-1.1425.1425", "start_pos": 1425, "end_pos": 1425, "uniprot_canonical_ac": "Q9QYF3-1", "length": 1828, "uniprot_id": "MYO5A_RAT", "protein_name": "Unconventional myosin-Va", "refseq_ac": "NP_071514", "refseq_name": "unconventional myosin-Va isoform 2", "gene_name": "Myo5a", "gene_names_uniprotkb": "Myo5a", "gene_names_refseq": "Dop; Myh12; Myo5a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" }, { "database": "iPTMnet", "id": "Q9QYF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QYF3" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9QYF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QYF3", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QLKVFAKKIGELEVGQMENI", "down_seq": "PGQIIDEPIRPVNIPRKGKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9QYF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QYF3" } ], "site_lbl": "Ser1425" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "602", "end_pos": "602" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "1425", "end_pos": "1425" }, { "start_pos": "1625", "end_pos": "1625" }, { "start_pos": "1733", "end_pos": "1733" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9QYF3-1.1625.1625", "start_pos": 1625, "end_pos": 1625, "uniprot_canonical_ac": "Q9QYF3-1", "length": 1828, "uniprot_id": "MYO5A_RAT", "protein_name": "Unconventional myosin-Va", "refseq_ac": "NP_071514", "refseq_name": "unconventional myosin-Va isoform 2", "gene_name": "Myo5a", "gene_names_uniprotkb": "Myo5a", "gene_names_refseq": "Dop; Myh12; Myo5a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" }, { "database": "iPTMnet", "id": "Q9QYF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QYF3" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9QYF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QYF3", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HETIQGVSGVKPTGLRKRTS", "down_seq": "IADEGTYTLDSILRQLNSFH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9QYF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QYF3" } ], "site_lbl": "Ser1625" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "602", "end_pos": "602" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "1425", "end_pos": "1425" }, { "start_pos": "1625", "end_pos": "1625" }, { "start_pos": "1733", "end_pos": "1733" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9QYF3-1.1733.1733", "start_pos": 1733, "end_pos": 1733, "uniprot_canonical_ac": "Q9QYF3-1", "length": 1828, "uniprot_id": "MYO5A_RAT", "protein_name": "Unconventional myosin-Va", "refseq_ac": "NP_071514", "refseq_name": "unconventional myosin-Va isoform 2", "gene_name": "Myo5a", "gene_names_uniprotkb": "Myo5a", "gene_names_refseq": "Dop; Myh12; Myo5a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AKETLEPLIQAAQLLQVKKK", "down_seq": "DDDAEAICSMCNALTTAQIV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" } ], "site_lbl": "Thr1733" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "602", "end_pos": "602" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "1425", "end_pos": "1425" }, { "start_pos": "1625", "end_pos": "1625" }, { "start_pos": "1733", "end_pos": "1733" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QYF3-1.600.600", "start_pos": 600, "end_pos": 600, "uniprot_canonical_ac": "Q9QYF3-1", "length": 1828, "uniprot_id": "MYO5A_RAT", "protein_name": "Unconventional myosin-Va", "refseq_ac": "NP_071514", "refseq_name": "unconventional myosin-Va isoform 2", "gene_name": "Myo5a", "gene_names_uniprotkb": "Myo5a", "gene_names_refseq": "Dop; Myh12; Myo5a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" }, { "database": "iPTMnet", "id": "Q9QYF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QYF3" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9QYF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QYF3", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKSSKFKMLPELFQDDEKAI", "down_seq": "PTSATSSGRTPLTRVPVKPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QYF3", "url": "https://www.uniprot.org/uniprotkb/Q9QYF3" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9QYF3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QYF3" } ], "site_lbl": "Ser600" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "602", "end_pos": "602" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1032", "end_pos": "1032" }, { "start_pos": "1425", "end_pos": "1425" }, { "start_pos": "1625", "end_pos": "1625" }, { "start_pos": "1733", "end_pos": "1733" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9QYF3-1.602.602", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2GUV7-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NEEESASKQDKKKKGQKGKK", "down_seq": "SFDENDSEELEDKDSKSKKP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Thr107" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "B2GUV7-1.108.108", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "B2GUV7-1.114.114", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEESASKQDKKKKGQKGKKT", "down_seq": "FDENDSEELEDKDSKSKKPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser108" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "B2GUV7-1.107.107", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "B2GUV7-1.114.114", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KQDKKKKGQKGKKTSFDEND", "down_seq": "EELEDKDSKSKKPARPNSEV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser114" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "B2GUV7-1.107.107", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "B2GUV7-1.108.108", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.1164.1164", "start_pos": 1164, "end_pos": 1164, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VDVAKKGQEVCVKIEPIPGE", "down_seq": "PKMFGRHFEATDILVSKISR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser1164" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.137.137", "start_pos": 137, "end_pos": 137, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEDKDSKSKKPARPNSEVLL", "down_seq": "GSEDADDPNKLSKKGKKAQK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser137" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "B2GUV7-1.139.139", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.139.139", "start_pos": 139, "end_pos": 139, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DKDSKSKKPARPNSEVLLSG", "down_seq": "EDADDPNKLSKKGKKAQKST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser139" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "B2GUV7-1.137.137", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.165.165", "start_pos": 165, "end_pos": 165, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PNKLSKKGKKAQKSTKKRDG", "down_seq": "EEDEDNSKRSKERSRVNSSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser165" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "B2GUV7-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "B2GUV7-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "B2GUV7-1.184.184", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GKKAQKSTKKRDGSEEDEDN", "down_seq": "KRSKERSRVNSSGESGGESD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser172" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "B2GUV7-1.165.165", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "B2GUV7-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "B2GUV7-1.184.184", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "B2GUV7-1.187.187", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "B2GUV7-1.191.191", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.183.183", "start_pos": 183, "end_pos": 183, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGSEEDEDNSKRSKERSRVN", "down_seq": "SGESGGESDEFLQSRKGQKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser183" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "B2GUV7-1.165.165", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "B2GUV7-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "B2GUV7-1.184.184", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "B2GUV7-1.187.187", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "B2GUV7-1.191.191", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.184.184", "start_pos": 184, "end_pos": 184, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSEEDEDNSKRSKERSRVNS", "down_seq": "GESGGESDEFLQSRKGQKKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser184" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "B2GUV7-1.165.165", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "B2GUV7-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "B2GUV7-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "B2GUV7-1.187.187", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "B2GUV7-1.191.191", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.187.187", "start_pos": 187, "end_pos": 187, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDEDNSKRSKERSRVNSSGE", "down_seq": "GGESDEFLQSRKGQKKNQKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser187" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "B2GUV7-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "B2GUV7-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "B2GUV7-1.184.184", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "B2GUV7-1.191.191", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.191.191", "start_pos": 191, "end_pos": 191, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NSKRSKERSRVNSSGESGGE", "down_seq": "DEFLQSRKGQKKNQKNKSVP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser191" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "B2GUV7-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "B2GUV7-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "B2GUV7-1.184.184", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "B2GUV7-1.187.187", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "B2GUV7-1.209.209", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.209.209", "start_pos": 209, "end_pos": 209, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GESDEFLQSRKGQKKNQKNK", "down_seq": "VPTIDSGNEDDDSSFKIKTV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser209" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "B2GUV7-1.191.191", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "B2GUV7-1.215.215", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "B2GUV7-1.223.223", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.215.215", "start_pos": 215, "end_pos": 215, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LQSRKGQKKNQKNKSVPTID", "down_seq": "GNEDDDSSFKIKTVAQKKAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser215" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "B2GUV7-1.209.209", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "B2GUV7-1.223.223", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.223.223", "start_pos": 223, "end_pos": 223, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KNQKNKSVPTIDSGNEDDDS", "down_seq": "FKIKTVAQKKAEKKERERKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser223" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "B2GUV7-1.209.209", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "B2GUV7-1.215.215", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.437.437", "start_pos": 437, "end_pos": 437, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RAEVTLRHLQAQGVEVPSKD", "down_seq": "LPKKRPVYEDKKKKKTPQQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser437" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.497.497", "start_pos": 497, "end_pos": 497, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QGVPEKEETPPSVDAEEDEE", "down_seq": "EDAGLDDWEAMASDEEREKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Thr497" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.544.544", "start_pos": 544, "end_pos": 544, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" }, { "database": "iPTMnet", "id": "B2GUV7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUV7" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2GUV7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUV7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVEENPEEEEEEEEDEDEED", "down_seq": "EDEEDEGDSEGSDGDEEDYK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2GUV7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUV7" } ], "site_lbl": "Ser544" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "B2GUV7-1.553.553", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "B2GUV7-1.556.556", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2GUV7-1.553.553", "start_pos": 553, "end_pos": 553, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" }, { "database": "iPTMnet", "id": "B2GUV7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUV7" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2GUV7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUV7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEEEEDEDEEDSEDEEDEGD", "down_seq": "EGSDGDEEDYKLSDEKDLGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2GUV7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUV7" } ], "site_lbl": "Ser553" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "B2GUV7-1.544.544", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "B2GUV7-1.556.556", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2GUV7-1.556.556", "start_pos": 556, "end_pos": 556, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" }, { "database": "iPTMnet", "id": "B2GUV7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUV7" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2GUV7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUV7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEDEDEEDSEDEEDEGDSEG", "down_seq": "DGDEEDYKLSDEKDLGKAGD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2GUV7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUV7" } ], "site_lbl": "Ser556" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "B2GUV7-1.544.544", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "B2GUV7-1.553.553", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2GUV7-1.584.584", "start_pos": 584, "end_pos": 584, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLSDEKDLGKAGDTKPNKDA", "down_seq": "SDSEYDSDDDRTKEERAYDK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser584" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "B2GUV7-1.585.585", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "B2GUV7-1.587.587", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "B2GUV7-1.591.591", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.585.585", "start_pos": 585, "end_pos": 585, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSDEKDLGKAGDTKPNKDAS", "down_seq": "DSEYDSDDDRTKEERAYDKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser585" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "B2GUV7-1.584.584", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "B2GUV7-1.587.587", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "B2GUV7-1.591.591", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.587.587", "start_pos": 587, "end_pos": 587, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DEKDLGKAGDTKPNKDASSD", "down_seq": "EYDSDDDRTKEERAYDKAKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser587" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "B2GUV7-1.584.584", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "B2GUV7-1.585.585", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "B2GUV7-1.591.591", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.591.591", "start_pos": 591, "end_pos": 591, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGKAGDTKPNKDASSDSEYD", "down_seq": "DDDRTKEERAYDKAKRRIEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser591" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "B2GUV7-1.584.584", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "B2GUV7-1.585.585", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "B2GUV7-1.587.587", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUV7-1.66.66", "start_pos": 66, "end_pos": 66, "uniprot_canonical_ac": "B2GUV7-1", "length": 1216, "uniprot_id": "IF2P_RAT", "protein_name": "Eukaryotic translation initiation factor 5B", "refseq_ac": "NP_001103611", "refseq_name": "eukaryotic translation initiation factor 5B", "gene_name": "Eif5b", "gene_names_uniprotkb": "Eif5b; If2", "gene_names_refseq": "Eif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEKKKQDFDENDILRELEEL", "down_seq": "LEAQGIGADRDAATVKPTEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUV7", "url": "https://www.uniprot.org/uniprotkb/B2GUV7" } ], "site_lbl": "Ser66" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "1164", "end_pos": "1164" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "139", "end_pos": "139" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "497", "end_pos": "497" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "553", "end_pos": "553" }, { "start_pos": "556", "end_pos": "556" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "66", "end_pos": "66" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.458.458", "start_pos": 458, "end_pos": 458, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PDZ domains of Par-3 as potential phosphoinositide signaling integrators.", "journal": "Molecular cell", "date": "2007", "authors": "Wu H, Feng W, Chen J, Chan LN, Huang S, Zhang M", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "reference": [ { "type": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "APPNVLSTSVGSVYNTKRVG", "down_seq": "RLNIQLKKGTEGLGFSITSR", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "E", "comment": "Reduces binding to membranes containing phosphoinositol lipids by half. Abolishes binding to membranes containing phosphoinositol lipids; when associated with E-546.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z340-1.491.491", "start_pos": 491, "end_pos": 491, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PDZ domains of Par-3 as potential phosphoinositide signaling integrators.", "journal": "Molecular cell", "date": "2007", "authors": "Wu H, Feng W, Chen J, Chan LN, Huang S, Zhang M", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "reference": [ { "type": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LGFSITSRDVTIGGSAPIYV", "down_seq": "NILPRGAAIQDGRLKAGDRL", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Slightly reduced binding to membranes containing phosphoinositol lipids.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] }, { "sequence_org": "K", "sequence_mut": "E", "comment": "Strongly reduced binding to membranes containing phosphoinositol lipids.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9Z340-1.489.489", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9Z340-1.504.504", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9Z340-1.506.506", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z340-1.504.504", "start_pos": 504, "end_pos": 504, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PDZ domains of Par-3 as potential phosphoinositide signaling integrators.", "journal": "Molecular cell", "date": "2007", "authors": "Wu H, Feng W, Chen J, Chan LN, Huang S, Zhang M", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "reference": [ { "type": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "GSAPIYVKNILPRGAAIQDG", "down_seq": "LKAGDRLIEVNGVDLAGKSQ", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Slightly reduced binding to membranes containing phosphoinositol lipids; when associated with A-506.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] }, { "sequence_org": "R", "sequence_mut": "E", "comment": "Abolishes binding to membranes containing phosphoinositol lipids; when associated with E-506.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9Z340-1.489.489", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9Z340-1.491.491", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9Z340-1.506.506", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z340-1.506.506", "start_pos": 506, "end_pos": 506, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PDZ domains of Par-3 as potential phosphoinositide signaling integrators.", "journal": "Molecular cell", "date": "2007", "authors": "Wu H, Feng W, Chen J, Chan LN, Huang S, Zhang M", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "reference": [ { "type": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "APIYVKNILPRGAAIQDGRL", "down_seq": "AGDRLIEVNGVDLAGKSQEE", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Slightly reduced binding to membranes containing phosphoinositol lipids; when associated with A-504.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] }, { "sequence_org": "K", "sequence_mut": "E", "comment": "Abolishes binding to membranes containing phosphoinositol lipids; when associated with E-504.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9Z340-1.489.489", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9Z340-1.491.491", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9Z340-1.504.504", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z340-1.532.532", "start_pos": 532, "end_pos": 532, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PDZ domains of Par-3 as potential phosphoinositide signaling integrators.", "journal": "Molecular cell", "date": "2007", "authors": "Wu H, Feng W, Chen J, Chan LN, Huang S, Zhang M", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "reference": [ { "type": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "IEVNGVDLAGKSQEEVVSLL", "down_seq": "STKMEGTVSLLVFRQEEAFH", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Reduces binding to membranes containing phosphoinositol lipids by half; when associated with A-535.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] }, { "sequence_org": "R", "sequence_mut": "E", "comment": "Almost abolished binding to membranes containing phosphoinositol lipids; when associated with E-535.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9Z340-1.535.535", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9Z340-1.546.546", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z340-1.535.535", "start_pos": 535, "end_pos": 535, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PDZ domains of Par-3 as potential phosphoinositide signaling integrators.", "journal": "Molecular cell", "date": "2007", "authors": "Wu H, Feng W, Chen J, Chan LN, Huang S, Zhang M", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "reference": [ { "type": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "NGVDLAGKSQEEVVSLLRST", "down_seq": "MEGTVSLLVFRQEEAFHPRE", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Reduces binding to membranes containing phosphoinositol lipids by half; when associated with A-532.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] }, { "sequence_org": "K", "sequence_mut": "E", "comment": "Almost abolished binding to membranes containing phosphoinositol lipids; when associated with E-532.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9Z340-1.532.532", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9Z340-1.546.546", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z340-1.546.546", "start_pos": 546, "end_pos": 546, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PDZ domains of Par-3 as potential phosphoinositide signaling integrators.", "journal": "Molecular cell", "date": "2007", "authors": "Wu H, Feng W, Chen J, Chan LN, Huang S, Zhang M", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "reference": [ { "type": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "EVVSLLRSTKMEGTVSLLVF", "down_seq": "QEEAFHPREMNAEPSQMQSP", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "E", "comment": "Abolishes binding to membranes containing phosphoinositol lipids; when associated with E-458.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "18082612", "url": "https://glygen.org/publication/PubMed/18082612" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9Z340-1.532.532", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9Z340-1.535.535", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z340-1.827.827", "start_pos": 827, "end_pos": 827, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Substrate recognition mechanism of atypical protein kinase Cs revealed by the structure of PKCiota in complex with a substrate peptide from Par-3.", "journal": "Structure (London, England : 1993)", "date": "2012", "authors": "Wang C, Shang Y, Yu J, Zhang M", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "iPTMnet", "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340" } ], "reference": [ { "type": "PubMed", "id": "22579248", "url": "https://glygen.org/publication/PubMed/22579248" } ] }, { "title": "Involvement of ASIP/PAR-3 in the promotion of epithelial tight junction formation.", "journal": "Journal of cell science", "date": "2002", "authors": "Hirose T, Izumi Y, Nagashima Y, Tamai-Nagai Y, Kurihara H, Sakai T, Suzuki Y, Yamanaka T, Suzuki A, Mizuno K, Ohno S", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "iPTMnet", "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340" } ], "reference": [ { "type": "PubMed", "id": "12045219", "url": "https://glygen.org/publication/PubMed/12045219" } ] } ], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22579248", "url": "https://glygen.org/publication/PubMed/22579248", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12045219", "url": "https://glygen.org/publication/PubMed/12045219", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLSPDVDPVLAFQREGFGRQ", "down_seq": "MSEKRTKQFSNASQLDFVKT", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "E", "comment": "Abolishes binding to PKCI.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "22579248", "url": "https://glygen.org/publication/PubMed/22579248" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "22579248", "url": "https://glygen.org/publication/PubMed/22579248" }, { "database": "PubMed", "id": "12045219", "url": "https://glygen.org/publication/PubMed/12045219" }, { "database": "iPTMnet", "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340" } ], "site_lbl": "Ser827" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9Z340-1.809.809", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9Z340-1.829.829", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9Z340-1.837.837", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z340-1.829.829", "start_pos": 829, "end_pos": 829, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Substrate recognition mechanism of atypical protein kinase Cs revealed by the structure of PKCiota in complex with a substrate peptide from Par-3.", "journal": "Structure (London, England : 1993)", "date": "2012", "authors": "Wang C, Shang Y, Yu J, Zhang M", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "iPTMnet", "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340" } ], "reference": [ { "type": "PubMed", "id": "22579248", "url": "https://glygen.org/publication/PubMed/22579248" } ] } ], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22579248", "url": "https://glygen.org/publication/PubMed/22579248", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPDVDPVLAFQREGFGRQSM", "down_seq": "EKRTKQFSNASQLDFVKTRK", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "No detectable impact on binding to PKCI.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "22579248", "url": "https://glygen.org/publication/PubMed/22579248" } ] }, { "sequence_org": "S", "sequence_mut": "E", "comment": "Abolishes binding to PKCI.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "22579248", "url": "https://glygen.org/publication/PubMed/22579248" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9Z340-1.809.809", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9Z340-1.827.827", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9Z340-1.837.837", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z340-1.1046.1046", "start_pos": 1046, "end_pos": 1046, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FGKHRKDDKMEKMGRIKIQD", "down_seq": "FTSEEDRVRMKEEQERIQAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser1046" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.1116.1116", "start_pos": 1116, "end_pos": 1116, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "ERK2-mediated phosphorylation of Par3 regulates neuronal polarization.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2013", "authors": "Funahashi Y, Namba T, Fujisue S, Itoh N, Nakamuta S, Kato K, Shimada A, Xu C, Shan W, Nishioka T, Kaibuchi K", "evidence": [ { "database": "iPTMnet", "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340" } ], "reference": [ { "type": "PubMed", "id": "23946386", "url": "https://glygen.org/publication/PubMed/23946386" } ] } ], "crossref": [ { "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23946386", "url": "https://glygen.org/publication/PubMed/23946386", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLYGGMSSYDGCLALNARPQ", "down_seq": "PREGHLMDTLYAQVKKPRSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340" }, { "database": "PubMed", "id": "23946386", "url": "https://glygen.org/publication/PubMed/23946386" } ], "site_lbl": "Ser1116" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z340-1.156.156", "start_pos": 156, "end_pos": 156, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MPLHVRRSSDPALTGLSTSV", "down_seq": "DNNFSSEEPSRKNPTRWSTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser156" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q9Z340-1.174.174", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.174.174", "start_pos": 174, "end_pos": 174, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "iPTMnet", "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVSDNNFSSEEPSRKNPTRW", "down_seq": "TTAGFLKQNTTGSPKTCDRK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340" } ], "site_lbl": "Ser174" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9Z340-1.156.156", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z340-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VCFGRTRVVVPCGDGRMKVF", "down_seq": "LIQQAVTRYRKAVAKDPNYW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser25" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.383.383", "start_pos": 383, "end_pos": 383, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEQYEQLSQREMNNYSPGRF", "down_seq": "PDSHCVANRSVANNAPQALP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser383" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.489.489", "start_pos": 489, "end_pos": 489, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "EGLGFSITSRDVTIGGSAPI", "down_seq": "VKNILPRGAAIQDGRLKAGD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Tyr489" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9Z340-1.491.491", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9Z340-1.504.504", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9Z340-1.506.506", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.692.692", "start_pos": 692, "end_pos": 692, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRGMIQLIVARRISRCNELR", "down_seq": "PGSPAAPELPIETELDDRER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser692" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9Z340-1.695.695", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.695.695", "start_pos": 695, "end_pos": 695, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MIQLIVARRISRCNELRSPG", "down_seq": "PAAPELPIETELDDRERRIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser695" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9Z340-1.692.692", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9Z340-1.715.715", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.715.715", "start_pos": 715, "end_pos": 715, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPAAPELPIETELDDRERRI", "down_seq": "HSLYSGIEGLDESPTRNAAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser715" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9Z340-1.695.695", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9Z340-1.728.728", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.728.728", "start_pos": 728, "end_pos": 728, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DDRERRISHSLYSGIEGLDE", "down_seq": "PTRNAALSRIMGESGKCQLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser728" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q9Z340-1.715.715", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.809.809", "start_pos": 809, "end_pos": 809, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MTEAGTWAKATISDSADCSL", "down_seq": "PDVDPVLAFQREGFGRQSMS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser809" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q9Z340-1.827.827", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9Z340-1.829.829", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.837.837", "start_pos": 837, "end_pos": 837, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AFQREGFGRQSMSEKRTKQF", "down_seq": "NASQLDFVKTRKSKSMDLGI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser837" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9Z340-1.827.827", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9Z340-1.829.829", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9Z340-1.852.852", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.852.852", "start_pos": 852, "end_pos": 852, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "iPTMnet", "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RTKQFSNASQLDFVKTRKSK", "down_seq": "MDLGIADETKLNTVDDQRAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z340", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z340" } ], "site_lbl": "Ser852" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9Z340-1.837.837", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z340-1.873.873", "start_pos": 873, "end_pos": 873, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MDLGIADETKLNTVDDQRAG", "down_seq": "PNRDVGPSLGLKKSSSLESL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser873" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.91.91", "start_pos": 91, "end_pos": 91, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DKDRLVAVFDEQDPHHGGDG", "down_seq": "SASSTGTQSPEIFGSELGTN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Thr91" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.962.962", "start_pos": 962, "end_pos": 962, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DEGMETLEEDTEESSRSGRE", "down_seq": "VSTSSDQPSYSLERQMNGDP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by AURKA", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser962" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q9Z340-1.971.971", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9Z340-1.973.973", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.971.971", "start_pos": 971, "end_pos": 971, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DTEESSRSGRESVSTSSDQP", "down_seq": "YSLERQMNGDPEKRDKAEKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser971" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q9Z340-1.962.962", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9Z340-1.973.973", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z340-1.973.973", "start_pos": 973, "end_pos": 973, "uniprot_canonical_ac": "Q9Z340-1", "length": 1337, "uniprot_id": "PARD3_RAT", "protein_name": "Partitioning defective 3 homolog", "refseq_ac": "NP_112514", "refseq_name": "partitioning defective 3 homolog isoform 1", "gene_name": "Pard3", "gene_names_uniprotkb": "Pard3; Par3", "gene_names_refseq": "Par3; Pard3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EESSRSGRESVSTSSDQPSY", "down_seq": "LERQMNGDPEKRDKAEKKKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z340", "url": "https://www.uniprot.org/uniprotkb/Q9Z340" } ], "site_lbl": "Ser973" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "458" }, { "start_pos": "491", "end_pos": "491" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "829", "end_pos": "829" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1116", "end_pos": "1116" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "692", "end_pos": "692" }, { "start_pos": "695", "end_pos": "695" }, { "start_pos": "715", "end_pos": "715" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "809", "end_pos": "809" }, { "start_pos": "827", "end_pos": "827" }, { "start_pos": "837", "end_pos": "837" }, { "start_pos": "852", "end_pos": "852" }, { "start_pos": "873", "end_pos": "873" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "962", "end_pos": "962" }, { "start_pos": "971", "end_pos": "971" }, { "start_pos": "973", "end_pos": "973" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9Z340-1.962.962", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9Z340-1.971.971", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6P9U4-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "Q6P9U4-1", "length": 195, "uniprot_id": "PLD3B_RAT", "protein_name": "PRELI domain containing protein 3B", "refseq_ac": "NP_001009543", "refseq_name": "PRELI domain containing protein 3B", "gene_name": "Prelid3b", "gene_names_uniprotkb": "Prelid3b; Slmo2", "gene_names_refseq": "Prelid3b; Slmo2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6P9U4", "url": "https://www.uniprot.org/uniprotkb/Q6P9U4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q6P9U4", "url": "https://www.uniprot.org/uniprotkb/Q6P9U4" }, { "database": "iPTMnet", "id": "Q6P9U4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6P9U4" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q6P9U4", "url": "https://www.uniprot.org/uniprotkb/Q6P9U4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6P9U4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6P9U4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PNPMNPSVVGVDVLDRHVDP", "down_seq": "GKLHSHRLLSTEWGLPSIVK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6P9U4", "url": "https://www.uniprot.org/uniprotkb/Q6P9U4" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q6P9U4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6P9U4" } ], "site_lbl": "Ser46" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "46", "end_pos": "46" }, { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q6P9U4-1.51.51", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6P9U4-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "Q6P9U4-1", "length": 195, "uniprot_id": "PLD3B_RAT", "protein_name": "PRELI domain containing protein 3B", "refseq_ac": "NP_001009543", "refseq_name": "PRELI domain containing protein 3B", "gene_name": "Prelid3b", "gene_names_uniprotkb": "Prelid3b; Slmo2", "gene_names_refseq": "Prelid3b; Slmo2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6P9U4", "url": "https://www.uniprot.org/uniprotkb/Q6P9U4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q6P9U4", "url": "https://www.uniprot.org/uniprotkb/Q6P9U4" }, { "database": "iPTMnet", "id": "Q6P9U4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6P9U4" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q6P9U4", "url": "https://www.uniprot.org/uniprotkb/Q6P9U4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6P9U4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6P9U4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSVVGVDVLDRHVDPSGKLH", "down_seq": "HRLLSTEWGLPSIVKSLIGA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6P9U4", "url": "https://www.uniprot.org/uniprotkb/Q6P9U4" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q6P9U4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6P9U4" } ], "site_lbl": "Ser51" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "46", "end_pos": "46" }, { "start_pos": "51", "end_pos": "51" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q6P9U4-1.46.46", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08589-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "O08589-1", "length": 92, "uniprot_id": "PLM_RAT", "protein_name": "Phospholemman", "refseq_ac": "XP_006228901", "refseq_name": "phospholemman isoform X5", "gene_name": "Fxyd1", "gene_names_uniprotkb": "Fxyd1; Plm", "gene_names_refseq": "Fxyd1; Plm", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RCRCKFNQQQRTGEPDEEEG", "down_seq": "FRSSIRRLSTRRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" } ], "site_lbl": "Thr79" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "79", "end_pos": "79" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O08589-1.82.82", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O08589-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O08589-1.88.88", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O08589-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08589-1.82.82", "start_pos": 82, "end_pos": 82, "uniprot_canonical_ac": "O08589-1", "length": 92, "uniprot_id": "PLM_RAT", "protein_name": "Phospholemman", "refseq_ac": "XP_006228901", "refseq_name": "phospholemman isoform X5", "gene_name": "Fxyd1", "gene_names_uniprotkb": "Fxyd1; Plm", "gene_names_refseq": "Fxyd1; Plm", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CKFNQQQRTGEPDEEEGTFR", "down_seq": "SIRRLSTRRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" } ], "site_lbl": "Ser82" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "79", "end_pos": "79" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O08589-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O08589-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O08589-1.88.88", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O08589-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08589-1.83.83", "start_pos": 83, "end_pos": 83, "uniprot_canonical_ac": "O08589-1", "length": 92, "uniprot_id": "PLM_RAT", "protein_name": "Phospholemman", "refseq_ac": "XP_006228901", "refseq_name": "phospholemman isoform X5", "gene_name": "Fxyd1", "gene_names_uniprotkb": "Fxyd1; Plm", "gene_names_refseq": "Fxyd1; Plm", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "A separate pool of cardiac phospholemman that does not regulate or associate with the sodium pump: multimers of phospholemman in ventricular muscle.", "journal": "The Journal of biological chemistry", "date": "2013", "authors": "Wypijewski KJ, Howie J, Reilly L, Tulloch LB, Aughton KL, McLatchie LM, Shattock MJ, Calaghan SC, Fuller W", "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" }, { "database": "iPTMnet", "id": "O08589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08589" } ], "reference": [ { "type": "PubMed", "id": "23532852", "url": "https://glygen.org/publication/PubMed/23532852" } ] }, { "title": "FXYD1 phosphorylation in vitro and in adult rat cardiac myocytes: threonine 69 is a novel substrate for protein kinase C.", "journal": "American journal of physiology. Cell physiology", "date": "2009", "authors": "Fuller W, Howie J, McLatchie LM, Weber RJ, Hastie CJ, Burness K, Pavlovic D, Shattock MJ", "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" }, { "database": "iPTMnet", "id": "O08589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08589" } ], "reference": [ { "type": "PubMed", "id": "19339511", "url": "https://glygen.org/publication/PubMed/19339511" } ] } ], "crossref": [ { "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O08589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08589", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23532852", "url": "https://glygen.org/publication/PubMed/23532852", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19339511", "url": "https://glygen.org/publication/PubMed/19339511", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KFNQQQRTGEPDEEEGTFRS", "down_seq": "IRRLSTRRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA and PKC", "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" }, { "database": "iPTMnet", "id": "O08589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08589" }, { "database": "PubMed", "id": "23532852", "url": "https://glygen.org/publication/PubMed/23532852" }, { "database": "PubMed", "id": "19339511", "url": "https://glygen.org/publication/PubMed/19339511" } ], "site_lbl": "Ser83" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "79", "end_pos": "79" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O08589-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O08589-1.82.82", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O08589-1.88.88", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O08589-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08589-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "O08589-1", "length": 92, "uniprot_id": "PLM_RAT", "protein_name": "Phospholemman", "refseq_ac": "XP_006228901", "refseq_name": "phospholemman isoform X5", "gene_name": "Fxyd1", "gene_names_uniprotkb": "Fxyd1; Plm", "gene_names_refseq": "Fxyd1; Plm", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "A separate pool of cardiac phospholemman that does not regulate or associate with the sodium pump: multimers of phospholemman in ventricular muscle.", "journal": "The Journal of biological chemistry", "date": "2013", "authors": "Wypijewski KJ, Howie J, Reilly L, Tulloch LB, Aughton KL, McLatchie LM, Shattock MJ, Calaghan SC, Fuller W", "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" }, { "database": "iPTMnet", "id": "O08589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08589" } ], "reference": [ { "type": "PubMed", "id": "23532852", "url": "https://glygen.org/publication/PubMed/23532852" } ] }, { "title": "FXYD1 phosphorylation in vitro and in adult rat cardiac myocytes: threonine 69 is a novel substrate for protein kinase C.", "journal": "American journal of physiology. Cell physiology", "date": "2009", "authors": "Fuller W, Howie J, McLatchie LM, Weber RJ, Hastie CJ, Burness K, Pavlovic D, Shattock MJ", "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" }, { "database": "iPTMnet", "id": "O08589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08589" } ], "reference": [ { "type": "PubMed", "id": "19339511", "url": "https://glygen.org/publication/PubMed/19339511" } ] } ], "crossref": [ { "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O08589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08589", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23532852", "url": "https://glygen.org/publication/PubMed/23532852", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19339511", "url": "https://glygen.org/publication/PubMed/19339511", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QRTGEPDEEEGTFRSSIRRL", "down_seq": "TRRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA", "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" }, { "database": "iPTMnet", "id": "O08589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08589" }, { "database": "PubMed", "id": "23532852", "url": "https://glygen.org/publication/PubMed/23532852" }, { "database": "PubMed", "id": "19339511", "url": "https://glygen.org/publication/PubMed/19339511" } ], "site_lbl": "Ser88" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "79", "end_pos": "79" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O08589-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O08589-1.82.82", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O08589-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O08589-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08589-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "O08589-1", "length": 92, "uniprot_id": "PLM_RAT", "protein_name": "Phospholemman", "refseq_ac": "XP_006228901", "refseq_name": "phospholemman isoform X5", "gene_name": "Fxyd1", "gene_names_uniprotkb": "Fxyd1; Plm", "gene_names_refseq": "Fxyd1; Plm", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "FXYD1 phosphorylation in vitro and in adult rat cardiac myocytes: threonine 69 is a novel substrate for protein kinase C.", "journal": "American journal of physiology. Cell physiology", "date": "2009", "authors": "Fuller W, Howie J, McLatchie LM, Weber RJ, Hastie CJ, Burness K, Pavlovic D, Shattock MJ", "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" }, { "database": "iPTMnet", "id": "O08589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08589" } ], "reference": [ { "type": "PubMed", "id": "19339511", "url": "https://glygen.org/publication/PubMed/19339511" } ] } ], "crossref": [ { "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O08589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08589", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19339511", "url": "https://glygen.org/publication/PubMed/19339511", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RTGEPDEEEGTFRSSIRRLS", "down_seq": "RRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "O08589", "url": "https://www.uniprot.org/uniprotkb/O08589" }, { "database": "iPTMnet", "id": "O08589", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08589" }, { "database": "PubMed", "id": "19339511", "url": "https://glygen.org/publication/PubMed/19339511" } ], "site_lbl": "Thr89" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "79", "end_pos": "79" }, { "start_pos": "82", "end_pos": "82" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O08589-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O08589-1.82.82", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O08589-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O08589-1.88.88", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O88763-1.163.163", "start_pos": 163, "end_pos": 163, "uniprot_canonical_ac": "O88763-1", "length": 887, "uniprot_id": "PK3C3_RAT", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "refseq_ac": "NP_075247", "refseq_name": "phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "Pik3c3", "gene_names_uniprotkb": "Pik3c3; Vps34", "gene_names_refseq": "Pik3c3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LKVWPNVEADGSEPTRTPGR", "down_seq": "SSTLSEDQMSRLAKLTKAHR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by AMPK", "evidence": [ { "database": "UniProtKB", "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763" } ], "site_lbl": "Thr163" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "282", "end_pos": "282" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O88763-1.165.165", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88763-1.165.165", "start_pos": 165, "end_pos": 165, "uniprot_canonical_ac": "O88763-1", "length": 887, "uniprot_id": "PK3C3_RAT", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "refseq_ac": "NP_075247", "refseq_name": "phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "Pik3c3", "gene_names_uniprotkb": "Pik3c3; Vps34", "gene_names_refseq": "Pik3c3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VWPNVEADGSEPTRTPGRTS", "down_seq": "TLSEDQMSRLAKLTKAHRQG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by AMPK", "evidence": [ { "database": "UniProtKB", "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763" } ], "site_lbl": "Ser165" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "282", "end_pos": "282" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O88763-1.163.163", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88763-1.244.244", "start_pos": 244, "end_pos": 244, "uniprot_canonical_ac": "O88763-1", "length": 887, "uniprot_id": "PK3C3_RAT", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "refseq_ac": "NP_075247", "refseq_name": "phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "Pik3c3", "gene_names_uniprotkb": "Pik3c3; Vps34", "gene_names_refseq": "Pik3c3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763" }, { "database": "iPTMnet", "id": "O88763", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88763" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O88763", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88763", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VKCDDKEYGIVYYEKDGDES", "down_seq": "PILTSFELVKVPDPQMSMEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O88763", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88763" } ], "site_lbl": "Ser244" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "282", "end_pos": "282" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "O88763-1.261.261", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O88763-1.261.261", "start_pos": 261, "end_pos": 261, "uniprot_canonical_ac": "O88763-1", "length": 887, "uniprot_id": "PK3C3_RAT", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "refseq_ac": "NP_075247", "refseq_name": "phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "Pik3c3", "gene_names_uniprotkb": "Pik3c3; Vps34", "gene_names_refseq": "Pik3c3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DESSPILTSFELVKVPDPQM", "down_seq": "MENLVESKHHKLARSLRSGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763" } ], "site_lbl": "Ser261" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "282", "end_pos": "282" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O88763-1.244.244", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88763-1.282.282", "start_pos": 282, "end_pos": 282, "uniprot_canonical_ac": "O88763-1", "length": 887, "uniprot_id": "PK3C3_RAT", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "refseq_ac": "NP_075247", "refseq_name": "phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "Pik3c3", "gene_names_uniprotkb": "Pik3c3; Vps34", "gene_names_refseq": "Pik3c3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MENLVESKHHKLARSLRSGP", "down_seq": "DHDLKPNATTRDQLNIIVSY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88763", "url": "https://www.uniprot.org/uniprotkb/O88763" } ], "site_lbl": "Ser282" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "244", "end_pos": "244" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "282", "end_pos": "282" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P52164-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "P52164-1", "length": 160, "uniprot_id": "MAX_RAT", "protein_name": "Protein max", "refseq_ac": "NP_071546", "refseq_name": "protein max isoform 1", "gene_name": "Max", "gene_names_uniprotkb": "Max", "gene_names_refseq": "Max", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P52164", "url": "https://www.uniprot.org/uniprotkb/P52164" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P52164", "url": "https://www.uniprot.org/uniprotkb/P52164", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DLKRQNALLEQQVRALEKAR", "down_seq": "SAQLQTNYPSSDNSLYTNAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P52164", "url": "https://www.uniprot.org/uniprotkb/P52164" } ], "site_lbl": "Ser107" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "2", "end_pos": "2" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P52164-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "P52164-1", "length": 160, "uniprot_id": "MAX_RAT", "protein_name": "Protein max", "refseq_ac": "NP_071546", "refseq_name": "protein max isoform 1", "gene_name": "Max", "gene_names_uniprotkb": "Max", "gene_names_refseq": "Max", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P52164", "url": "https://www.uniprot.org/uniprotkb/P52164" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P52164", "url": "https://www.uniprot.org/uniprotkb/P52164" }, { "database": "iPTMnet", "id": "P52164", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52164" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P52164", "url": "https://www.uniprot.org/uniprotkb/P52164", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P52164", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52164", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSDNDDIEVE", "down_seq": "DEEQPRFQSAADKRAHHNAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P52164", "url": "https://www.uniprot.org/uniprotkb/P52164" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P52164", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52164" } ], "site_lbl": "Ser11" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "2", "end_pos": "2" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P52164-1.2.2", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P52164-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "P52164-1", "length": 160, "uniprot_id": "MAX_RAT", "protein_name": "Protein max", "refseq_ac": "NP_071546", "refseq_name": "protein max isoform 1", "gene_name": "Max", "gene_names_uniprotkb": "Max", "gene_names_refseq": "Max", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P52164", "url": "https://www.uniprot.org/uniprotkb/P52164" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P52164", "url": "https://www.uniprot.org/uniprotkb/P52164" }, { "database": "iPTMnet", "id": "P52164", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52164" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P52164", "url": "https://www.uniprot.org/uniprotkb/P52164", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P52164", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52164", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "M", "down_seq": "DNDDIEVESDEEQPRFQSAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P52164", "url": "https://www.uniprot.org/uniprotkb/P52164" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P52164", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52164" } ], "site_lbl": "Ser2" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "2", "end_pos": "2" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "P52164-1.11.11", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47860-1.540.540", "start_pos": 540, "end_pos": 540, "uniprot_canonical_ac": "P47860-1", "length": 788, "uniprot_id": "PFKAP_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, platelet type", "refseq_ac": "NP_996729", "refseq_name": "ATP-dependent 6-phosphofructokinase, platelet type", "gene_name": "Pfkp", "gene_names_uniprotkb": "Pfkp; Pfkc", "gene_names_refseq": "ATP-PFK; PFK-C; PFK-P; Pfkp; pfkc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AARNKHEAFCVPMVMVPATV", "down_seq": "NNVPGSDFSIGADTALNTIT", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GlcNAc) serine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser540", "evidence": [ { "id": "P47860", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47860#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P47860-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P47860-1", "length": 788, "uniprot_id": "PFKAP_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, platelet type", "refseq_ac": "NP_996729", "refseq_name": "ATP-dependent 6-phosphofructokinase, platelet type", "gene_name": "Pfkp", "gene_names_uniprotkb": "Pfkp; Pfkc", "gene_names_refseq": "ATP-PFK; PFK-C; PFK-P; Pfkp; pfkc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P47860", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47860" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P47860", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47860" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47860", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47860", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "P47860", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47860" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P47860-1.2.2", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P47860-1.6.6", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P47860-1.12.12", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47860-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "P47860-1", "length": 788, "uniprot_id": "PFKAP_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, platelet type", "refseq_ac": "NP_996729", "refseq_name": "ATP-dependent 6-phosphofructokinase, platelet type", "gene_name": "Pfkp", "gene_names_uniprotkb": "Pfkp; Pfkc", "gene_names_refseq": "ATP-PFK; PFK-C; PFK-P; Pfkp; pfkc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSDQDSSTSST", "down_seq": "FPKYLEHLSGDGKAIGVLTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" } ], "site_lbl": "Ser12" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P47860-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P47860-1.2.2", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P47860-1.6.6", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P47860-1.21.21", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P47860-1.142.142", "start_pos": 142, "end_pos": 142, "uniprot_canonical_ac": "P47860-1", "length": 788, "uniprot_id": "PFKAP_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, platelet type", "refseq_ac": "NP_996729", "refseq_name": "ATP-dependent 6-phosphofructokinase, platelet type", "gene_name": "Pfkp", "gene_names_uniprotkb": "Pfkp; Pfkc", "gene_names_refseq": "ATP-PFK; PFK-C; PFK-P; Pfkp; pfkc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" }, { "database": "iPTMnet", "id": "P47860", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47860" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47860", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47860", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LCVIGGDGSLTGANLFRKEW", "down_seq": "GLLEELAKNGEIDSDTVKKH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P47860", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47860" } ], "site_lbl": "Ser142" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47860-1.21.21", "start_pos": 21, "end_pos": 21, "uniprot_canonical_ac": "P47860-1", "length": 788, "uniprot_id": "PFKAP_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, platelet type", "refseq_ac": "NP_996729", "refseq_name": "ATP-dependent 6-phosphofructokinase, platelet type", "gene_name": "Pfkp", "gene_names_uniprotkb": "Pfkp; Pfkc", "gene_names_refseq": "ATP-PFK; PFK-C; PFK-P; Pfkp; pfkc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSDQDSSTSSTSFPKYLEHL", "down_seq": "GDGKAIGVLTSGGDAQGMNA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" } ], "site_lbl": "Ser21" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P47860-1.2.2", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P47860-1.6.6", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P47860-1.12.12", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P47860-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "P47860-1", "length": 788, "uniprot_id": "PFKAP_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, platelet type", "refseq_ac": "NP_996729", "refseq_name": "ATP-dependent 6-phosphofructokinase, platelet type", "gene_name": "Pfkp", "gene_names_uniprotkb": "Pfkp; Pfkc", "gene_names_refseq": "ATP-PFK; PFK-C; PFK-P; Pfkp; pfkc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" }, { "database": "iPTMnet", "id": "P47860", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47860" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47860", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47860", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "M", "down_seq": "DQDSSTSSTSFPKYLEHLSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P47860", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47860" } ], "site_lbl": "Ser2" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P47860-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P47860-1.6.6", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P47860-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P47860-1.21.21", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47860-1.386.386", "start_pos": 386, "end_pos": 386, "uniprot_canonical_ac": "P47860-1", "length": 788, "uniprot_id": "PFKAP_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, platelet type", "refseq_ac": "NP_996729", "refseq_name": "ATP-dependent 6-phosphofructokinase, platelet type", "gene_name": "Pfkp", "gene_names_uniprotkb": "Pfkp; Pfkc", "gene_names_refseq": "ATP-PFK; PFK-C; PFK-P; Pfkp; pfkc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" }, { "database": "iPTMnet", "id": "P47860", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47860" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47860", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47860", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVQKAMDERRFDEAVKLRGR", "down_seq": "FEGNLNTYKRLAIKEPDDKI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P47860", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47860" } ], "site_lbl": "Ser386" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47860-1.651.651", "start_pos": 651, "end_pos": 651, "uniprot_canonical_ac": "P47860-1", "length": 788, "uniprot_id": "PFKAP_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, platelet type", "refseq_ac": "NP_996729", "refseq_name": "ATP-dependent 6-phosphofructokinase, platelet type", "gene_name": "Pfkp", "gene_names_uniprotkb": "Pfkp; Pfkc", "gene_names_refseq": "ATP-PFK; PFK-C; PFK-P; Pfkp; pfkc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "QRGLVLRNENCSVNYTTDFI", "down_seq": "QLYSEEGKGVFDCRKNVLGH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" } ], "site_lbl": "Tyr651" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P47860-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "P47860-1", "length": 788, "uniprot_id": "PFKAP_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, platelet type", "refseq_ac": "NP_996729", "refseq_name": "ATP-dependent 6-phosphofructokinase, platelet type", "gene_name": "Pfkp", "gene_names_uniprotkb": "Pfkp; Pfkc", "gene_names_refseq": "ATP-PFK; PFK-C; PFK-P; Pfkp; pfkc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSDQD", "down_seq": "STSSTSFPKYLEHLSGDGKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47860", "url": "https://www.uniprot.org/uniprotkb/P47860" } ], "site_lbl": "Ser6" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P47860-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P47860-1.2.2", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P47860-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P47860-1.21.21", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIR4-1.257.257", "start_pos": 257, "end_pos": 257, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ERSRSQTPLSTAAVSSQDTA", "down_seq": "PGAPLHRNKGAEPSQQALGP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr257", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q9JIR4-1.241.241", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIR4-1.744.744", "start_pos": 744, "end_pos": 744, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSSSFESQKMERPSISVISP", "down_seq": "SPGALKDAPQVLPGQLSVKL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr744", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9JIR4-1.742.742", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9JIR4-1.745.745", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIR4-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9JIR4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9JIR4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9JIR4", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "Q9JIR4", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9JIR4" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.1045.1045", "start_pos": 1045, "end_pos": 1045, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QYSSEPDSELLMLPRAKRGR", "down_seq": "AESLHMTSELQPSLDRARSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "site_lbl": "Ser1045" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIR4-1.1175.1175", "start_pos": 1175, "end_pos": 1175, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APGGSAPPSPLLLTRTHRQG", "down_seq": "PTQSPPADTSFGSRRGRQLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "site_lbl": "Ser1175" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9JIR4-1.1177.1177", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9JIR4-1.1179.1179", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.1177.1177", "start_pos": 1177, "end_pos": 1177, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GGSAPPSPLLLTRTHRQGSP", "down_seq": "QSPPADTSFGSRRGRQLPQV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "site_lbl": "Thr1177" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9JIR4-1.1175.1175", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9JIR4-1.1179.1179", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.1179.1179", "start_pos": 1179, "end_pos": 1179, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SAPPSPLLLTRTHRQGSPTQ", "down_seq": "PPADTSFGSRRGRQLPQVPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "site_lbl": "Ser1179" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9JIR4-1.1175.1175", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9JIR4-1.1177.1177", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.1231.1231", "start_pos": 1231, "end_pos": 1231, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VEERTRQMKVKVHRFKQTTG", "down_seq": "GSSQELDHEQYSKYNIHKDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "site_lbl": "Ser1231" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9JIR4-1.1233.1233", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9JIR4-1.1234.1234", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.1233.1233", "start_pos": 1233, "end_pos": 1233, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERTRQMKVKVHRFKQTTGSG", "down_seq": "SQELDHEQYSKYNIHKDQYR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "site_lbl": "Ser1233" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9JIR4-1.1231.1231", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9JIR4-1.1234.1234", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.1234.1234", "start_pos": 1234, "end_pos": 1234, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RTRQMKVKVHRFKQTTGSGS", "down_seq": "QELDHEQYSKYNIHKDQYRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "site_lbl": "Ser1234" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9JIR4-1.1231.1231", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9JIR4-1.1233.1233", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.1262.1262", "start_pos": 1262, "end_pos": 1262, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YSKYNIHKDQYRSCDNASAK", "down_seq": "SDSDVSDVSAISRASSTSRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "site_lbl": "Ser1262" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9JIR4-1.1263.1263", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9JIR4-1.1265.1265", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIR4-1.1263.1263", "start_pos": 1263, "end_pos": 1263, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKYNIHKDQYRSCDNASAKS", "down_seq": "DSDVSDVSAISRASSTSRLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "site_lbl": "Ser1263" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9JIR4-1.1262.1262", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9JIR4-1.1265.1265", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIR4-1.1265.1265", "start_pos": 1265, "end_pos": 1265, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YNIHKDQYRSCDNASAKSSD", "down_seq": "DVSDVSAISRASSTSRLSST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "site_lbl": "Ser1265" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9JIR4-1.1262.1262", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9JIR4-1.1263.1263", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIR4-1.1339.1339", "start_pos": 1339, "end_pos": 1339, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IKSTSVSGEIYTLERNDGSQ", "down_seq": "DTAVGTVGAGGKKRRSSLSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "site_lbl": "Ser1339" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.1600.1600", "start_pos": 1600, "end_pos": 1600, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLFPPSSLVDPTLAPLTRRA", "down_seq": "QSSLESSSGPPCIRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "site_lbl": "Ser1600" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9JIR4-1.1603.1603", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9JIR4-1.1606.1606", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9JIR4-1.1615.1615", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.1603.1603", "start_pos": 1603, "end_pos": 1603, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPSSLVDPTLAPLTRRASQS", "down_seq": "LESSSGPPCIRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "site_lbl": "Ser1603" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9JIR4-1.1600.1600", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9JIR4-1.1606.1606", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9JIR4-1.1615.1615", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.1606.1606", "start_pos": 1606, "end_pos": 1606, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLVDPTLAPLTRRASQSSLE", "down_seq": "SSGPPCIRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "site_lbl": "Ser1606" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9JIR4-1.1600.1600", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9JIR4-1.1603.1603", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9JIR4-1.1615.1615", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIR4-1.1615.1615", "start_pos": 1615, "end_pos": 1615, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LTRRASQSSLESSSGPPCIR", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "site_lbl": "Ser1615" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9JIR4-1.1600.1600", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9JIR4-1.1603.1603", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9JIR4-1.1606.1606", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIR4-1.241.241", "start_pos": 241, "end_pos": 241, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Rim, a component of the presynaptic active zone and modulator of exocytosis, binds 14-3-3 through its N terminus.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Sun L, Bittner MA, Holz RW", "evidence": [ { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "12871946", "url": "https://glygen.org/publication/PubMed/12871946" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "12871946", "url": "https://glygen.org/publication/PubMed/12871946", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TGAGSEVPREKKARLQERSR", "down_seq": "QTPLSTAAVSSQDTATPGAP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" }, { "database": "PubMed", "id": "12871946", "url": "https://glygen.org/publication/PubMed/12871946" } ], "site_lbl": "Ser241" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "Q9JIR4-1.257.257", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.287.287", "start_pos": 287, "end_pos": 287, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Rim, a component of the presynaptic active zone and modulator of exocytosis, binds 14-3-3 through its N terminus.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Sun L, Bittner MA, Holz RW", "evidence": [ { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "12871946", "url": "https://glygen.org/publication/PubMed/12871946" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "12871946", "url": "https://glygen.org/publication/PubMed/12871946", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GAEPSQQALGPEQKQASRSR", "down_seq": "EPPRERKKAPGLSEQNGKGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" }, { "database": "PubMed", "id": "12871946", "url": "https://glygen.org/publication/PubMed/12871946" } ], "site_lbl": "Ser287" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.413.413", "start_pos": 413, "end_pos": 413, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Analysis of protein phosphorylation in nerve terminal reveals extensive changes in active zone proteins upon exocytosis.", "journal": "eLife", "date": "2016", "authors": "Kohansal-Nodehi M, Chua JJ, Urlaub H, Jahn R, Czernik D", "evidence": [ { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "27115346", "url": "https://glygen.org/publication/PubMed/27115346" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27115346", "url": "https://glygen.org/publication/PubMed/27115346", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEQQMRMHARVSRARHERRH", "down_seq": "DVALPHTEAAAAAPAEATAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" }, { "database": "PubMed", "id": "27115346", "url": "https://glygen.org/publication/PubMed/27115346" } ], "site_lbl": "Ser413" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.514.514", "start_pos": 514, "end_pos": 514, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SAVLLRKAKREKAESMLRND", "down_seq": "LSSDQSESVRPSPPKPHRPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "site_lbl": "Ser514" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.592.592", "start_pos": 592, "end_pos": 592, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKGDLDYYWLDPATWHSRET", "down_seq": "PISSHPVTWQPSKEGDRLIG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "site_lbl": "Ser592" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.742.742", "start_pos": 742, "end_pos": 742, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESSSSSFESQKMERPSISVI", "down_seq": "PTSPGALKDAPQVLPGQLSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "site_lbl": "Ser742" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9JIR4-1.744.744", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9JIR4-1.745.745", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIR4-1.745.745", "start_pos": 745, "end_pos": 745, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSFESQKMERPSISVISPT", "down_seq": "PGALKDAPQVLPGQLSVKLW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "site_lbl": "Ser745" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9JIR4-1.742.742", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9JIR4-1.744.744", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIR4-1.895.895", "start_pos": 895, "end_pos": 895, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EPHWYKLQTHDESSLPLPQP", "down_seq": "PFMPRRHIHGESSSKKLQRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "site_lbl": "Ser895" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIR4-1.991.991", "start_pos": 991, "end_pos": 991, "uniprot_canonical_ac": "Q9JIR4-1", "length": 1615, "uniprot_id": "RIMS1_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 1", "refseq_ac": "NP_439894", "refseq_name": "regulating synaptic membrane exocytosis protein 1 isoform 2", "gene_name": "Rims1", "gene_names_uniprotkb": "Rims1; Rim1", "gene_names_refseq": "RIM1a; Rim1; Rims1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HRGDDQGRPRSRLPNVPLQR", "down_seq": "LDEIHPTRRSRSPTRHHDAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIR4", "url": "https://www.uniprot.org/uniprotkb/Q9JIR4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIR4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIR4" } ], "site_lbl": "Ser991" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "257", "end_pos": "257" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1175", "end_pos": "1175" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "1233", "end_pos": "1233" }, { "start_pos": "1234", "end_pos": "1234" }, { "start_pos": "1262", "end_pos": "1262" }, { "start_pos": "1263", "end_pos": "1263" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1615", "end_pos": "1615" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "592", "end_pos": "592" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "895", "end_pos": "895" }, { "start_pos": "991", "end_pos": "991" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P69735-1.173.173", "start_pos": 173, "end_pos": 173, "uniprot_canonical_ac": "P69735-1", "length": 775, "uniprot_id": "RB3GP_RAT", "protein_name": "Rab3 GTPase-activating protein catalytic subunit", "refseq_ac": "", "refseq_name": "", "gene_name": "Rab3gap1", "gene_names_uniprotkb": "Rab3gap1; RGD1306487; Rab3gap", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DITHALSKLTEPAPVPIHKL", "down_seq": "VSNMVHTAKKKIRKHRGEES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735" } ], "site_lbl": "Ser173" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "173", "end_pos": "173" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "458", "end_pos": "458" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P69735-1.330.330", "start_pos": 330, "end_pos": 330, "uniprot_canonical_ac": "P69735-1", "length": 775, "uniprot_id": "RB3GP_RAT", "protein_name": "Rab3 GTPase-activating protein catalytic subunit", "refseq_ac": "", "refseq_name": "", "gene_name": "Rab3gap1", "gene_names_uniprotkb": "Rab3gap1; RGD1306487; Rab3gap", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LQMLNCCIERKKARDEGKKT", "down_seq": "PSDSMTKAYPADAGKAGGQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735" } ], "site_lbl": "Ser330" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "173", "end_pos": "173" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "458", "end_pos": "458" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P69735-1.373.373", "start_pos": 373, "end_pos": 373, "uniprot_canonical_ac": "P69735-1", "length": 775, "uniprot_id": "RB3GP_RAT", "protein_name": "Rab3 GTPase-activating protein catalytic subunit", "refseq_ac": "", "refseq_name": "", "gene_name": "Rab3gap1", "gene_names_uniprotkb": "Rab3gap1; RGD1306487; Rab3gap", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DHLRDTEKEKGEAGKSWDSW", "down_seq": "DSEEEFFECLSDAEDLRGNG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735" } ], "site_lbl": "Ser373" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "173", "end_pos": "173" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "458", "end_pos": "458" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P69735-1.375.375", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P69735-1.384.384", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P69735-1.375.375", "start_pos": 375, "end_pos": 375, "uniprot_canonical_ac": "P69735-1", "length": 775, "uniprot_id": "RB3GP_RAT", "protein_name": "Rab3 GTPase-activating protein catalytic subunit", "refseq_ac": "", "refseq_name": "", "gene_name": "Rab3gap1", "gene_names_uniprotkb": "Rab3gap1; RGD1306487; Rab3gap", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRDTEKEKGEAGKSWDSWSD", "down_seq": "EEEFFECLSDAEDLRGNGQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735" } ], "site_lbl": "Ser375" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "173", "end_pos": "173" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "458", "end_pos": "458" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P69735-1.373.373", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P69735-1.384.384", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P69735-1.384.384", "start_pos": 384, "end_pos": 384, "uniprot_canonical_ac": "P69735-1", "length": 775, "uniprot_id": "RB3GP_RAT", "protein_name": "Rab3 GTPase-activating protein catalytic subunit", "refseq_ac": "", "refseq_name": "", "gene_name": "Rab3gap1", "gene_names_uniprotkb": "Rab3gap1; RGD1306487; Rab3gap", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAGKSWDSWSDSEEEFFECL", "down_seq": "DAEDLRGNGQESTKKGGPKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735" } ], "site_lbl": "Ser384" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "173", "end_pos": "173" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "458", "end_pos": "458" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P69735-1.373.373", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P69735-1.375.375", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P69735-1.458.458", "start_pos": 458, "end_pos": 458, "uniprot_canonical_ac": "P69735-1", "length": 775, "uniprot_id": "RB3GP_RAT", "protein_name": "Rab3 GTPase-activating protein catalytic subunit", "refseq_ac": "", "refseq_name": "", "gene_name": "Rab3gap1", "gene_names_uniprotkb": "Rab3gap1; RGD1306487; Rab3gap", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APMTEDLLEEQSEVLAKLGT", "down_seq": "AEGAHLRARMQSACLLSDME", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P69735", "url": "https://www.uniprot.org/uniprotkb/P69735" } ], "site_lbl": "Ser458" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "173", "end_pos": "173" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "373", "end_pos": "373" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "458", "end_pos": "458" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PQS0-1.218.218", "start_pos": 218, "end_pos": 218, "uniprot_canonical_ac": "Q5PQS0-1", "length": 1059, "uniprot_id": "PKHM1_RAT", "protein_name": "Pleckstrin homology domain-containing family M member 1", "refseq_ac": "NP_001009677", "refseq_name": "pleckstrin homology domain-containing family M member 1", "gene_name": "Plekhm1", "gene_names_uniprotkb": "Plekhm1", "gene_names_refseq": "Plekhm1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQS0", "url": "https://www.uniprot.org/uniprotkb/Q5PQS0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5PQS0", "url": "https://www.uniprot.org/uniprotkb/Q5PQS0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CPLSELDPLTVSGAELQRKE", "down_seq": "LDSISHSSGSEDIEVQHSGH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQS0", "url": "https://www.uniprot.org/uniprotkb/Q5PQS0" } ], "site_lbl": "Ser218" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "433", "end_pos": "433" }, { "start_pos": "488", "end_pos": "488" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PQS0-1.430.430", "start_pos": 430, "end_pos": 430, "uniprot_canonical_ac": "Q5PQS0-1", "length": 1059, "uniprot_id": "PKHM1_RAT", "protein_name": "Pleckstrin homology domain-containing family M member 1", "refseq_ac": "NP_001009677", "refseq_name": "pleckstrin homology domain-containing family M member 1", "gene_name": "Plekhm1", "gene_names_uniprotkb": "Plekhm1", "gene_names_refseq": "Plekhm1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQS0", "url": "https://www.uniprot.org/uniprotkb/Q5PQS0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5PQS0", "url": "https://www.uniprot.org/uniprotkb/Q5PQS0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSEPWKALEYGRVGPKLVVS", "down_seq": "PTSPKGKSWISEDDFCRPPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQS0", "url": "https://www.uniprot.org/uniprotkb/Q5PQS0" } ], "site_lbl": "Ser430" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "433", "end_pos": "433" }, { "start_pos": "488", "end_pos": "488" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q5PQS0-1.433.433", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PQS0-1.433.433", "start_pos": 433, "end_pos": 433, "uniprot_canonical_ac": "Q5PQS0-1", "length": 1059, "uniprot_id": "PKHM1_RAT", "protein_name": "Pleckstrin homology domain-containing family M member 1", "refseq_ac": "NP_001009677", "refseq_name": "pleckstrin homology domain-containing family M member 1", "gene_name": "Plekhm1", "gene_names_uniprotkb": "Plekhm1", "gene_names_refseq": "Plekhm1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQS0", "url": "https://www.uniprot.org/uniprotkb/Q5PQS0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5PQS0", "url": "https://www.uniprot.org/uniprotkb/Q5PQS0" }, { "database": "iPTMnet", "id": "Q5PQS0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQS0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5PQS0", "url": "https://www.uniprot.org/uniprotkb/Q5PQS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5PQS0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQS0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PWKALEYGRVGPKLVVSSPT", "down_seq": "PKGKSWISEDDFCRPPKEHA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQS0", "url": "https://www.uniprot.org/uniprotkb/Q5PQS0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5PQS0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQS0" } ], "site_lbl": "Ser433" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "433", "end_pos": "433" }, { "start_pos": "488", "end_pos": "488" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q5PQS0-1.430.430", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5PQS0-1.488.488", "start_pos": 488, "end_pos": 488, "uniprot_canonical_ac": "Q5PQS0-1", "length": 1059, "uniprot_id": "PKHM1_RAT", "protein_name": "Pleckstrin homology domain-containing family M member 1", "refseq_ac": "NP_001009677", "refseq_name": "pleckstrin homology domain-containing family M member 1", "gene_name": "Plekhm1", "gene_names_uniprotkb": "Plekhm1", "gene_names_refseq": "Plekhm1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQS0", "url": "https://www.uniprot.org/uniprotkb/Q5PQS0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5PQS0", "url": "https://www.uniprot.org/uniprotkb/Q5PQS0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPELRTALHGPFSQGPRKSC", "down_seq": "LGALDKACVSSLDYRNAQTA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQS0", "url": "https://www.uniprot.org/uniprotkb/Q5PQS0" } ], "site_lbl": "Ser488" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "433", "end_pos": "433" }, { "start_pos": "488", "end_pos": "488" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70581-1.144.144", "start_pos": 144, "end_pos": 144, "uniprot_canonical_ac": "P70581-1", "length": 585, "uniprot_id": "NUP58_RAT", "protein_name": "Nucleoporin p58/p45", "refseq_ac": "NP_620791", "refseq_name": "nucleoporin p58/p45", "gene_name": "Nup58", "gene_names_uniprotkb": "Nup58; Nupl1", "gene_names_refseq": "Nup45; Nup58; Nupl1; p58/p45", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70581", "url": "https://www.uniprot.org/uniprotkb/P70581" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SALTSAPAASTGFTLNNLGA", "down_seq": "PATTTAASTGLSLGGALAGL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr144", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70581-1.35.35", "start_pos": 35, "end_pos": 35, "uniprot_canonical_ac": "P70581-1", "length": 585, "uniprot_id": "NUP58_RAT", "protein_name": "Nucleoporin p58/p45", "refseq_ac": "NP_620791", "refseq_name": "nucleoporin p58/p45", "gene_name": "Nup58", "gene_names_uniprotkb": "Nup58; Nupl1", "gene_names_refseq": "Nup45; Nup58; Nupl1; p58/p45", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70581", "url": "https://www.uniprot.org/uniprotkb/P70581" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TTVAPGGTGTGSGFSFGASS", "down_seq": "PSVGLNFGTLGSSATPASTS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr35", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "P70581-1.50.50", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70581-1.439.439", "start_pos": 439, "end_pos": 439, "uniprot_canonical_ac": "P70581-1", "length": 585, "uniprot_id": "NUP58_RAT", "protein_name": "Nucleoporin p58/p45", "refseq_ac": "NP_620791", "refseq_name": "nucleoporin p58/p45", "gene_name": "Nup58", "gene_names_uniprotkb": "Nup58; Nupl1", "gene_names_refseq": "Nup45; Nup58; Nupl1; p58/p45", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70581", "url": "https://www.uniprot.org/uniprotkb/P70581" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EARRTEAKKWQNAPRVTTGP", "down_seq": "PFSTMPNAAAVAMAATLTQQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr439", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70581-1.50.50", "start_pos": 50, "end_pos": 50, "uniprot_canonical_ac": "P70581-1", "length": 585, "uniprot_id": "NUP58_RAT", "protein_name": "Nucleoporin p58/p45", "refseq_ac": "NP_620791", "refseq_name": "nucleoporin p58/p45", "gene_name": "Nup58", "gene_names_uniprotkb": "Nup58; Nupl1", "gene_names_refseq": "Nup45; Nup58; Nupl1; p58/p45", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70581", "url": "https://www.uniprot.org/uniprotkb/P70581" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FGASSTPSVGLNFGTLGSSA", "down_seq": "PASTSTSASGFGTGLFGSKP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr50", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P70581-1.35.35", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70581-1.317.317", "start_pos": 317, "end_pos": 317, "uniprot_canonical_ac": "P70581-1", "length": 585, "uniprot_id": "NUP58_RAT", "protein_name": "Nucleoporin p58/p45", "refseq_ac": "NP_620791", "refseq_name": "nucleoporin p58/p45", "gene_name": "Nup58", "gene_names_uniprotkb": "Nup58; Nupl1", "gene_names_refseq": "Nup45; Nup58; Nupl1; p58/p45", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70581", "url": "https://www.uniprot.org/uniprotkb/P70581" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70581", "url": "https://www.uniprot.org/uniprotkb/P70581", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LKLETAQELKNAEIALRTQK", "down_seq": "PPGLQHENTAPADYFRVLVQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P70581", "url": "https://www.uniprot.org/uniprotkb/P70581" } ], "site_lbl": "Thr317" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "50", "end_pos": "50" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "317", "end_pos": "317" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q08603-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "Q08603-1", "length": 331, "uniprot_id": "PGTB2_RAT", "protein_name": "Geranylgeranyl transferase type-2 subunit beta", "refseq_ac": "NP_619715", "refseq_name": "geranylgeranyl transferase type-2 subunit beta", "gene_name": "Rabggtb", "gene_names_uniprotkb": "Rabggtb; Ggtb", "gene_names_refseq": "Rabggtb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q08603", "url": "https://www.uniprot.org/uniprotkb/Q08603" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q08603", "url": "https://www.uniprot.org/uniprotkb/Q08603", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MG", "down_seq": "QQKDVTIKSDAPDTLLLEKH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q08603", "url": "https://www.uniprot.org/uniprotkb/Q08603" } ], "site_lbl": "Thr3" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P83871-1.94.94", "start_pos": 94, "end_pos": 94, "uniprot_canonical_ac": "P83871-1", "length": 110, "uniprot_id": "PHF5A_RAT", "protein_name": "PHD finger-like domain-containing protein 5A", "refseq_ac": "NP_620243", "refseq_name": "PHD finger-like domain-containing protein 5A", "gene_name": "Phf5a", "gene_names_uniprotkb": "Phf5a; Ini", "gene_names_refseq": "Ac2-246; Phf5a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P83871", "url": "https://www.uniprot.org/uniprotkb/P83871" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P83871", "url": "https://www.uniprot.org/uniprotkb/P83871", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ECTIQEKDRDGCPKIVNLGS", "down_seq": "KTDLFYERKKYGFKKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P83871", "url": "https://www.uniprot.org/uniprotkb/P83871" } ], "site_lbl": "Ser94" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "94", "end_pos": "94" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63625-1.1002.1002", "start_pos": 1002, "end_pos": 1002, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VPSPDAPQITTHRIVEFRAS", "down_seq": "RSRSTSSSRSRKKTKKKKKV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "site_lbl": "Ser1002" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q63625-1.984.984", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63625-1.1135.1135", "start_pos": 1135, "end_pos": 1135, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HESRRRKRRHSGSRSRGRDG", "down_seq": "PHSSLERDRRHKHRERSRER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "site_lbl": "Ser1135" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q63625-1.1139.1139", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63625-1.1139.1139", "start_pos": 1139, "end_pos": 1139, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRKRRHSGSRSRGRDGSPHS", "down_seq": "LERDRRHKHRERSRERMDKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "site_lbl": "Ser1139" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q63625-1.1135.1135", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63625-1.1205.1205", "start_pos": 1205, "end_pos": 1205, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" }, { "database": "iPTMnet", "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PHSREKHPHSPEKKGAVREV", "down_seq": "PAPAPQGEPRQDGDHSTKPP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625" } ], "site_lbl": "Ser1205" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63625-1.1372.1372", "start_pos": 1372, "end_pos": 1372, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APSDQCLLRQDTVETTATTL", "down_seq": "TPGVLPMGKDSPLLSGRGCE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "site_lbl": "Ser1372" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q63625-1.1383.1383", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63625-1.1383.1383", "start_pos": 1383, "end_pos": 1383, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TVETTATTLSTPGVLPMGKD", "down_seq": "PLLSGRGCEVVRPKDAVAPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "site_lbl": "Ser1383" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q63625-1.1372.1372", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63625-1.1416.1416", "start_pos": 1416, "end_pos": 1416, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PKDAVAPAPLLRSRTLVKRV", "down_seq": "WNLQEAEASTPALDRDPRTP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "site_lbl": "Thr1416" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63625-1.335.335", "start_pos": 335, "end_pos": 335, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DETIEAVATGLSTAVYQRPL", "down_seq": "PRVPAKRKRKAGRRKKVLGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "site_lbl": "Thr335" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63625-1.450.450", "start_pos": 450, "end_pos": 450, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" }, { "database": "iPTMnet", "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DIGAASLSLFGDPYALDPFD", "down_seq": "NGEQSADPPSPLSAKRRVLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625" } ], "site_lbl": "Ser450" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q63625-1.460.460", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63625-1.460.460", "start_pos": 460, "end_pos": 460, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" }, { "database": "iPTMnet", "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GDPYALDPFDSNGEQSADPP", "down_seq": "PLSAKRRVLSRSALQSHQPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625" } ], "site_lbl": "Ser460" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q63625-1.450.450", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63625-1.817.817", "start_pos": 817, "end_pos": 817, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PGFCNTFRPVDSKVQRKENP", "down_seq": "PLFSIKKPKQLKSEIYDPFD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "site_lbl": "Ser817" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63625-1.848.848", "start_pos": 848, "end_pos": 848, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKSEIYDPFDPTGSDSSPPS", "down_seq": "SPESLGSGLLPSEITRTISI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "site_lbl": "Ser848" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q63625-1.849.849", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q63625-1.867.867", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63625-1.849.849", "start_pos": 849, "end_pos": 849, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSEIYDPFDPTGSDSSPPSS", "down_seq": "PESLGSGLLPSEITRTISIN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "site_lbl": "Ser849" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q63625-1.848.848", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q63625-1.867.867", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63625-1.867.867", "start_pos": 867, "end_pos": 867, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSPESLGSGLLPSEITRTI", "down_seq": "INSPKAPAFQTVRCVTSYRV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "site_lbl": "Ser867" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q63625-1.848.848", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q63625-1.849.849", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q63625-1.870.870", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63625-1.870.870", "start_pos": 870, "end_pos": 870, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" }, { "database": "iPTMnet", "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PESLGSGLLPSEITRTISIN", "down_seq": "PKAPAFQTVRCVTSYRVESV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625" } ], "site_lbl": "Ser870" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q63625-1.867.867", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63625-1.922.922", "start_pos": 922, "end_pos": 922, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" }, { "database": "iPTMnet", "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PGEPVSGMLELLGKGPAEGA", "down_seq": "DLEQEGLGEIEPTEIQGSSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63625", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63625" } ], "site_lbl": "Ser922" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63625-1.948.948", "start_pos": 948, "end_pos": 948, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLGEIEPTEIQGSSARAQRP", "down_seq": "PPDPWDDEDGVSCTPFFGSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "site_lbl": "Ser948" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63625-1.984.984", "start_pos": 984, "end_pos": 984, "uniprot_canonical_ac": "Q63625-1", "length": 1685, "uniprot_id": "PHRF1_RAT", "protein_name": "PHD and RING finger domain-containing protein 1", "refseq_ac": "XP_006230576", "refseq_name": "PHD and RING finger domain-containing protein 1 isoform X3", "gene_name": "Phrf1", "gene_names_uniprotkb": "Phrf1", "gene_names_refseq": "Phrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FFGSEERTVTCVTVEEPSVP", "down_seq": "PDAPQITTHRIVEFRASSRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63625", "url": "https://www.uniprot.org/uniprotkb/Q63625" } ], "site_lbl": "Ser984" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1002", "end_pos": "1002" }, { "start_pos": "1135", "end_pos": "1135" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1205", "end_pos": "1205" }, { "start_pos": "1372", "end_pos": "1372" }, { "start_pos": "1383", "end_pos": "1383" }, { "start_pos": "1416", "end_pos": "1416" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "817", "end_pos": "817" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "849", "end_pos": "849" }, { "start_pos": "867", "end_pos": "867" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "922", "end_pos": "922" }, { "start_pos": "948", "end_pos": "948" }, { "start_pos": "984", "end_pos": "984" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q63625-1.1002.1002", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KAQEETPQQPEAAAAVTTPV", "down_seq": "PAGHSHPETNSNEKHLTQQD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr33", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9WTP0-1.30.30", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Exploring the O-GlcNAc proteome: direct identification of O-GlcNAc-modified proteins from the brain.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2004", "authors": "Khidekel N, Ficarro SB, Peters EC, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9WTP0", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "15340146", "url": "https://glygen.org/publication/PubMed/15340146" } ] }, { "title": "Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics.", "journal": "Nature chemical biology", "date": "2007", "authors": "Khidekel N, Ficarro SB, Clark PM, Bryan MC, Swaney DL, Rexach JE, Sun YE, Coon JJ, Peters EC, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9WTP0", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "17496889", "url": "https://glygen.org/publication/PubMed/17496889" } ] }, { "title": "Mapping of O-linked beta-N-acetylglucosamine modification sites in key contractile proteins of rat skeletal muscle.", "journal": "Proteomics", "date": "2009", "authors": "Hedou J, Bastide B, Page A, Michalski JC, Morelle W", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9WTP0", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "19322778", "url": "https://glygen.org/publication/PubMed/19322778" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9WTP0", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] } ], "crossref": [ { "id": "15340146", "url": "https://glygen.org/publication/PubMed/15340146", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9WTP0", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "17496889", "url": "https://glygen.org/publication/PubMed/17496889", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19322778", "url": "https://glygen.org/publication/PubMed/19322778", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "15340146", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/15340146" }, { "id": "Q9WTP0", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9WTP0" }, { "id": "17496889", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/17496889" }, { "id": "19322778", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/19322778" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.30.30", "start_pos": 30, "end_pos": 30, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EVKKAQEETPQQPEAAAAVT", "down_seq": "PVTPAGHSHPETNSNEKHLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "site_lbl": "Thr30" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9WTP0-1.33.33", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.343.343", "start_pos": 343, "end_pos": 343, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KILKISYKRSNFYIKIRPGE", "down_seq": "EQFESTIGFKLPNHRSAKRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "site_lbl": "Tyr343" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.378.378", "start_pos": 378, "end_pos": 378, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSAKRLWKVCIEHHTFFRLV", "down_seq": "PEPPPKGFLVMGSKFRYSGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser378" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.430.430", "start_pos": 430, "end_pos": 430, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IDRPAPFFERSSSKRYTMSR", "down_seq": "LDGAEFSRPASVSENHDAGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser430" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q9WTP0-1.437.437", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.437.437", "start_pos": 437, "end_pos": 437, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FERSSSKRYTMSRSLDGAEF", "down_seq": "RPASVSENHDAGPDGDKRED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "site_lbl": "Ser437" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9WTP0-1.430.430", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.461.461", "start_pos": 461, "end_pos": 461, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVSENHDAGPDGDKREDDAE", "down_seq": "GGRRSEAEEGEVRTPTKIKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser461" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q9WTP0-1.466.466", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9WTP0-1.475.475", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.466.466", "start_pos": 466, "end_pos": 466, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HDAGPDGDKREDDAESGGRR", "down_seq": "EAEEGEVRTPTKIKELKPEQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser466" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9WTP0-1.461.461", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9WTP0-1.475.475", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.475.475", "start_pos": 475, "end_pos": 475, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "REDDAESGGRRSEAEEGEVR", "down_seq": "PTKIKELKPEQETTPRHKQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "site_lbl": "Thr475" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9WTP0-1.461.461", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9WTP0-1.466.466", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.510.510", "start_pos": 510, "end_pos": 510, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PRHKQEFLDKPEDVLLKHQA", "down_seq": "INELKRTLKEPNSKLIHRDR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser510" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.540.540", "start_pos": 540, "end_pos": 540, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EPNSKLIHRDRDWERERRLP", "down_seq": "SPASPSPKGTPEKASERAGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "site_lbl": "Ser540" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9WTP0-1.541.541", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9WTP0-1.544.544", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9WTP0-1.546.546", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9WTP0-1.550.550", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.541.541", "start_pos": 541, "end_pos": 541, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PNSKLIHRDRDWERERRLPS", "down_seq": "PASPSPKGTPEKASERAGLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "site_lbl": "Ser541" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9WTP0-1.540.540", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9WTP0-1.544.544", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9WTP0-1.546.546", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9WTP0-1.550.550", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.544.544", "start_pos": 544, "end_pos": 544, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLIHRDRDWERERRLPSSPA", "down_seq": "PSPKGTPEKASERAGLREGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "site_lbl": "Ser544" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9WTP0-1.540.540", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9WTP0-1.541.541", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9WTP0-1.546.546", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9WTP0-1.550.550", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9WTP0-1.564.564", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.546.546", "start_pos": 546, "end_pos": 546, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IHRDRDWERERRLPSSPASP", "down_seq": "PKGTPEKASERAGLREGSEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser546" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9WTP0-1.540.540", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9WTP0-1.541.541", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9WTP0-1.544.544", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9WTP0-1.550.550", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9WTP0-1.564.564", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.550.550", "start_pos": 550, "end_pos": 550, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RDWERERRLPSSPASPSPKG", "down_seq": "PEKASERAGLREGSEEKVKP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Thr550" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9WTP0-1.540.540", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9WTP0-1.541.541", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9WTP0-1.544.544", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9WTP0-1.546.546", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9WTP0-1.564.564", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.564.564", "start_pos": 564, "end_pos": 564, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPSPKGTPEKASERAGLREG", "down_seq": "EEKVKPPRPRAPESDTGDED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser564" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9WTP0-1.544.544", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q9WTP0-1.546.546", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9WTP0-1.550.550", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9WTP0-1.578.578", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9WTP0-1.580.580", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.578.578", "start_pos": 578, "end_pos": 578, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGLREGSEEKVKPPRPRAPE", "down_seq": "DTGDEDQDQERDAVFLKDNH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser578" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9WTP0-1.564.564", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9WTP0-1.580.580", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.580.580", "start_pos": 580, "end_pos": 580, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LREGSEEKVKPPRPRAPESD", "down_seq": "GDEDQDQERDAVFLKDNHLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Thr580" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q9WTP0-1.564.564", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9WTP0-1.578.578", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.639.639", "start_pos": 639, "end_pos": 639, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVDFTVIGDYHGGAFEDFSR", "down_seq": "LPELDRDKSDSETEGLVFAR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "site_lbl": "Ser639" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q9WTP0-1.648.648", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9WTP0-1.650.650", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.648.648", "start_pos": 648, "end_pos": 648, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YHGGAFEDFSRSLPELDRDK", "down_seq": "DSETEGLVFARDLKGPSSQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser648" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q9WTP0-1.639.639", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9WTP0-1.650.650", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9WTP0-1.665.665", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9WTP0-1.666.666", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.650.650", "start_pos": 650, "end_pos": 650, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGAFEDFSRSLPELDRDKSD", "down_seq": "ETEGLVFARDLKGPSSQEDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser650" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9WTP0-1.639.639", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9WTP0-1.648.648", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9WTP0-1.665.665", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9WTP0-1.666.666", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.665.665", "start_pos": 665, "end_pos": 665, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RDKSDSETEGLVFARDLKGP", "down_seq": "SQEDESGGIEDSPDRGACST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser665" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9WTP0-1.648.648", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9WTP0-1.650.650", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9WTP0-1.666.666", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9WTP0-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9WTP0-1.677.677", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9WTP0-1.684.684", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9WTP0-1.685.685", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.666.666", "start_pos": 666, "end_pos": 666, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DKSDSETEGLVFARDLKGPS", "down_seq": "QEDESGGIEDSPDRGACSTP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser666" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9WTP0-1.648.648", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9WTP0-1.650.650", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9WTP0-1.665.665", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9WTP0-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9WTP0-1.677.677", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9WTP0-1.684.684", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9WTP0-1.685.685", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.671.671", "start_pos": 671, "end_pos": 671, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ETEGLVFARDLKGPSSQEDE", "down_seq": "GGIEDSPDRGACSTPELPQF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "site_lbl": "Ser671" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9WTP0-1.665.665", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9WTP0-1.666.666", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9WTP0-1.677.677", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9WTP0-1.684.684", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9WTP0-1.685.685", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.677.677", "start_pos": 677, "end_pos": 677, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FARDLKGPSSQEDESGGIED", "down_seq": "PDRGACSTPELPQFESVKAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser677" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9WTP0-1.665.665", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9WTP0-1.666.666", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9WTP0-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9WTP0-1.684.684", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9WTP0-1.685.685", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.684.684", "start_pos": 684, "end_pos": 684, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSSQEDESGGIEDSPDRGAC", "down_seq": "TPELPQFESVKAETMTVSSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "site_lbl": "Ser684" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9WTP0-1.665.665", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q9WTP0-1.666.666", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9WTP0-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9WTP0-1.677.677", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9WTP0-1.685.685", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.685.685", "start_pos": 685, "end_pos": 685, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSQEDESGGIEDSPDRGACS", "down_seq": "PELPQFESVKAETMTVSSLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "site_lbl": "Thr685" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9WTP0-1.665.665", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "Q9WTP0-1.666.666", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9WTP0-1.671.671", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9WTP0-1.677.677", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9WTP0-1.684.684", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.721.721", "start_pos": 721, "end_pos": 721, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VSSLAIRKKIEPEAMLQSRV", "down_seq": "TADSTQVDGGAPAAKDFMTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "site_lbl": "Ser721" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.75.75", "start_pos": 75, "end_pos": 75, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RPAEQSLDMEEKDYCEADGL", "down_seq": "ERTTPSKAQKSPQKIAKKFK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser75" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9WTP0-1.79.79", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.782.782", "start_pos": 782, "end_pos": 782, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KGAAAMIPGPQTVATEIRSL", "down_seq": "PIIGKDVLTSTYGATAETLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser782" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WTP0-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QSLDMEEKDYCEADGLSERT", "down_seq": "PSKAQKSPQKIAKKFKSATC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "site_lbl": "Thr79" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9WTP0-1.75.75", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WTP0-1.868.868", "start_pos": 868, "end_pos": 868, "uniprot_canonical_ac": "Q9WTP0-1", "length": 879, "uniprot_id": "E41L1_RAT", "protein_name": "Band 4.1-like protein 1", "refseq_ac": "NP_742087", "refseq_name": "band 4.1-like protein 1 isoform S", "gene_name": "Epb41l1", "gene_names_uniprotkb": "Epb41l1; Epb4.1l1", "gene_names_refseq": "4.1N; Epb4.1l1; Epb41l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLQHPDMLVTKAVVYRETDP", "down_seq": "PEERDKKPQES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTP0", "url": "https://www.uniprot.org/uniprotkb/Q9WTP0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WTP0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTP0" } ], "site_lbl": "Ser868" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "30", "end_pos": "30" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "546", "end_pos": "546" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "639", "end_pos": "639" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "666", "end_pos": "666" }, { "start_pos": "671", "end_pos": "671" }, { "start_pos": "677", "end_pos": "677" }, { "start_pos": "684", "end_pos": "684" }, { "start_pos": "685", "end_pos": "685" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "782", "end_pos": "782" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "868", "end_pos": "868" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O88453-1.194.194", "start_pos": 194, "end_pos": 194, "uniprot_canonical_ac": "O88453-1", "length": 931, "uniprot_id": "SAFB1_RAT", "protein_name": "Scaffold attachment factor B1", "refseq_ac": "", "refseq_name": "", "gene_name": "Safb", "gene_names_uniprotkb": "Safb; Safb1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PEQLQELAIDDKEAINNVDT", "down_seq": "SSDFTILQEMEEASLEPENE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "site_lbl": "Ser194" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "405", "end_pos": "405" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "623", "end_pos": "623" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O88453-1.196.196", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O88453-1.208.208", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88453-1.196.196", "start_pos": 196, "end_pos": 196, "uniprot_canonical_ac": "O88453-1", "length": 931, "uniprot_id": "SAFB1_RAT", "protein_name": "Scaffold attachment factor B1", "refseq_ac": "", "refseq_name": "", "gene_name": "Safb", "gene_names_uniprotkb": "Safb; Safb1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QLQELAIDDKEAINNVDTSS", "down_seq": "DFTILQEMEEASLEPENEKI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "site_lbl": "Ser196" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "405", "end_pos": "405" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "623", "end_pos": "623" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O88453-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O88453-1.208.208", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88453-1.208.208", "start_pos": 208, "end_pos": 208, "uniprot_canonical_ac": "O88453-1", "length": 931, "uniprot_id": "SAFB1_RAT", "protein_name": "Scaffold attachment factor B1", "refseq_ac": "", "refseq_name": "", "gene_name": "Safb", "gene_names_uniprotkb": "Safb; Safb1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" }, { "database": "iPTMnet", "id": "O88453", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88453" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O88453", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88453", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "INNVDTSSSDFTILQEMEEA", "down_seq": "LEPENEKILDILGETCKSEP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O88453", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88453" } ], "site_lbl": "Ser208" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "405", "end_pos": "405" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "623", "end_pos": "623" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O88453-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O88453-1.196.196", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O88453-1.24.24", "start_pos": 24, "end_pos": 24, "uniprot_canonical_ac": "O88453-1", "length": 931, "uniprot_id": "SAFB1_RAT", "protein_name": "Scaffold attachment factor B1", "refseq_ac": "", "refseq_name": "", "gene_name": "Safb", "gene_names_uniprotkb": "Safb; Safb1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" }, { "database": "iPTMnet", "id": "O88453", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88453" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O88453", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88453", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLSGLGDSGAASAAAVSSAA", "down_seq": "ETGTRRLSDLRVIDLRAELR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O88453", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88453" } ], "site_lbl": "Ser24" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "405", "end_pos": "405" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "623", "end_pos": "623" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O88453-1.405.405", "start_pos": 405, "end_pos": 405, "uniprot_canonical_ac": "O88453-1", "length": 931, "uniprot_id": "SAFB1_RAT", "protein_name": "Scaffold attachment factor B1", "refseq_ac": "", "refseq_name": "", "gene_name": "Safb", "gene_names_uniprotkb": "Safb; Safb1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NDVPAAPKESSASEGADQKM", "down_seq": "SVEDDSDTKRLSREEKGRSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "site_lbl": "Ser405" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "405", "end_pos": "405" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "623", "end_pos": "623" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O88453-1.406.406", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88453-1.406.406", "start_pos": 406, "end_pos": 406, "uniprot_canonical_ac": "O88453-1", "length": 931, "uniprot_id": "SAFB1_RAT", "protein_name": "Scaffold attachment factor B1", "refseq_ac": "", "refseq_name": "", "gene_name": "Safb", "gene_names_uniprotkb": "Safb; Safb1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVPAAPKESSASEGADQKMS", "down_seq": "VEDDSDTKRLSREEKGRSSC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "site_lbl": "Ser406" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "405", "end_pos": "405" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "623", "end_pos": "623" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O88453-1.405.405", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88453-1.437.437", "start_pos": 437, "end_pos": 437, "uniprot_canonical_ac": "O88453-1", "length": 931, "uniprot_id": "SAFB1_RAT", "protein_name": "Scaffold attachment factor B1", "refseq_ac": "", "refseq_name": "", "gene_name": "Safb", "gene_names_uniprotkb": "Safb; Safb1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SREEKGRSSCGRNFWVSGLS", "down_seq": "TTRATDLKNLFSRYGKVVGA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "site_lbl": "Ser437" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "405", "end_pos": "405" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "623", "end_pos": "623" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88453-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "O88453-1", "length": 931, "uniprot_id": "SAFB1_RAT", "protein_name": "Scaffold attachment factor B1", "refseq_ac": "", "refseq_name": "", "gene_name": "Safb", "gene_names_uniprotkb": "Safb; Safb1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RVIDLRAELRKRNLTSSGNK", "down_seq": "VLMERLKKAIEEEGGNPDEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "site_lbl": "Ser55" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "405", "end_pos": "405" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "623", "end_pos": "623" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88453-1.602.602", "start_pos": 602, "end_pos": 602, "uniprot_canonical_ac": "O88453-1", "length": 931, "uniprot_id": "SAFB1_RAT", "protein_name": "Scaffold attachment factor B1", "refseq_ac": "", "refseq_name": "", "gene_name": "Safb", "gene_names_uniprotkb": "Safb; Safb1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TERTVVMDKSKGVPVISVKT", "down_seq": "GSKERASKSQDRKSVSREKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "site_lbl": "Ser602" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "405", "end_pos": "405" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "623", "end_pos": "623" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O88453-1.604.604", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88453-1.604.604", "start_pos": 604, "end_pos": 604, "uniprot_canonical_ac": "O88453-1", "length": 931, "uniprot_id": "SAFB1_RAT", "protein_name": "Scaffold attachment factor B1", "refseq_ac": "", "refseq_name": "", "gene_name": "Safb", "gene_names_uniprotkb": "Safb; Safb1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RTVVMDKSKGVPVISVKTSG", "down_seq": "KERASKSQDRKSVSREKRSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "site_lbl": "Ser604" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "405", "end_pos": "405" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "623", "end_pos": "623" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O88453-1.602.602", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O88453-1.623.623", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88453-1.623.623", "start_pos": 623, "end_pos": 623, "uniprot_canonical_ac": "O88453-1", "length": 931, "uniprot_id": "SAFB1_RAT", "protein_name": "Scaffold attachment factor B1", "refseq_ac": "", "refseq_name": "", "gene_name": "Safb", "gene_names_uniprotkb": "Safb; Safb1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSKERASKSQDRKSVSREKR", "down_seq": "VVSFDKVKESRKSRDSESRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "site_lbl": "Ser623" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "405", "end_pos": "405" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "623", "end_pos": "623" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O88453-1.604.604", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O88453-1.626.626", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88453-1.626.626", "start_pos": 626, "end_pos": 626, "uniprot_canonical_ac": "O88453-1", "length": 931, "uniprot_id": "SAFB1_RAT", "protein_name": "Scaffold attachment factor B1", "refseq_ac": "", "refseq_name": "", "gene_name": "Safb", "gene_names_uniprotkb": "Safb; Safb1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERASKSQDRKSVSREKRSVV", "down_seq": "FDKVKESRKSRDSESRRERE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "site_lbl": "Ser626" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "405", "end_pos": "405" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "623", "end_pos": "623" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O88453-1.623.623", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88453-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "O88453-1", "length": 931, "uniprot_id": "SAFB1_RAT", "protein_name": "Scaffold attachment factor B1", "refseq_ac": "", "refseq_name": "", "gene_name": "Safb", "gene_names_uniprotkb": "Safb; Safb1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERLKKAIEEEGGNPDEIEVI", "down_seq": "EGNKKMPKRPSKGKKPEDEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88453", "url": "https://www.uniprot.org/uniprotkb/O88453" } ], "site_lbl": "Ser79" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "405", "end_pos": "405" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "602", "end_pos": "602" }, { "start_pos": "604", "end_pos": "604" }, { "start_pos": "623", "end_pos": "623" }, { "start_pos": "626", "end_pos": "626" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6URK4-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "An O-GlcNAcylomic Approach Reveals ACLY as a Potential Target in Sepsis in the Young Rat.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q6URK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6URK4" } ], "reference": [ { "type": "PubMed", "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q6URK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6URK4" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q6URK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6URK4" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6URK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6URK4", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "34502162", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34502162" }, { "id": "Q6URK4", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6URK4" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q6URK4-1.14.14", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6URK4-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AMCARPHKVDGRVVEPKRAV", "down_seq": "REDSVKPGAHLTVKKIFVGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "site_lbl": "Ser112" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q6URK4-1.116.116", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q6URK4-1.124.124", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6URK4-1.116.116", "start_pos": 116, "end_pos": 116, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RPHKVDGRVVEPKRAVSRED", "down_seq": "VKPGAHLTVKKIFVGGIKED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "site_lbl": "Ser116" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q6URK4-1.112.112", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q6URK4-1.124.124", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6URK4-1.124.124", "start_pos": 124, "end_pos": 124, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VVEPKRAVSREDSVKPGAHL", "down_seq": "VKKIFVGGIKEDTEEYNLRD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "site_lbl": "Thr124" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q6URK4-1.112.112", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q6URK4-1.116.116", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6URK4-1.14.14", "start_pos": 14, "end_pos": 14, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEVKPPPGRPQPD", "down_seq": "GRRRRRRGEEGHDPKEPEQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "site_lbl": "Ser14" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q6URK4-1.0.0", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6URK4-1.351.351", "start_pos": 351, "end_pos": 351, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NDFGNYSGQQQSNYGPMKGG", "down_seq": "FGGRSSGSPYGGGYGSGGGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "site_lbl": "Ser351" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q6URK4-1.359.359", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q6URK4-1.361.361", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q6URK4-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q6URK4-1.367.367", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q6URK4-1.371.371", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6URK4-1.359.359", "start_pos": 359, "end_pos": 359, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" }, { "database": "iPTMnet", "id": "Q6URK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6URK4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6URK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6URK4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQQSNYGPMKGGSFGGRSSG", "down_seq": "PYGGGYGSGGGSGGYGSRRF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6URK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6URK4" } ], "site_lbl": "Ser359" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q6URK4-1.351.351", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q6URK4-1.361.361", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q6URK4-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q6URK4-1.367.367", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q6URK4-1.371.371", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q6URK4-1.374.374", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q6URK4-1.376.376", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6URK4-1.361.361", "start_pos": 361, "end_pos": 361, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "QSNYGPMKGGSFGGRSSGSP", "down_seq": "GGGYGSGGGSGGYGSRRF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "site_lbl": "Tyr361" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q6URK4-1.351.351", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q6URK4-1.359.359", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6URK4-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q6URK4-1.367.367", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q6URK4-1.371.371", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q6URK4-1.374.374", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q6URK4-1.376.376", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6URK4-1.365.365", "start_pos": 365, "end_pos": 365, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GPMKGGSFGGRSSGSPYGGG", "down_seq": "GSGGGSGGYGSRRF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "site_lbl": "Tyr365" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q6URK4-1.351.351", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q6URK4-1.359.359", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q6URK4-1.361.361", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q6URK4-1.367.367", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q6URK4-1.371.371", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q6URK4-1.374.374", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q6URK4-1.376.376", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6URK4-1.367.367", "start_pos": 367, "end_pos": 367, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MKGGSFGGRSSGSPYGGGYG", "down_seq": "GGGSGGYGSRRF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "site_lbl": "Ser367" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q6URK4-1.351.351", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q6URK4-1.359.359", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q6URK4-1.361.361", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q6URK4-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6URK4-1.371.371", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q6URK4-1.374.374", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q6URK4-1.376.376", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6URK4-1.371.371", "start_pos": 371, "end_pos": 371, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SFGGRSSGSPYGGGYGSGGG", "down_seq": "GGYGSRRF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "site_lbl": "Ser371" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q6URK4-1.351.351", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q6URK4-1.359.359", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q6URK4-1.361.361", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q6URK4-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q6URK4-1.367.367", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q6URK4-1.374.374", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q6URK4-1.376.376", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6URK4-1.374.374", "start_pos": 374, "end_pos": 374, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GRSSGSPYGGGYGSGGGSGG", "down_seq": "GSRRF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "site_lbl": "Tyr374" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q6URK4-1.359.359", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q6URK4-1.361.361", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q6URK4-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q6URK4-1.367.367", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q6URK4-1.371.371", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q6URK4-1.376.376", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6URK4-1.376.376", "start_pos": 376, "end_pos": 376, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSGSPYGGGYGSGGGSGGYG", "down_seq": "RRF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "site_lbl": "Ser376" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q6URK4-1.359.359", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q6URK4-1.361.361", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q6URK4-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q6URK4-1.367.367", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q6URK4-1.371.371", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q6URK4-1.374.374", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6URK4-1.43.43", "start_pos": 43, "end_pos": 43, "uniprot_canonical_ac": "Q6URK4-1", "length": 379, "uniprot_id": "ROA3_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "refseq_ac": "NP_001104764", "refseq_name": "heterogeneous nuclear ribonucleoprotein A3 isoform a", "gene_name": "Hnrnpa3; LOC100911361; LOC120096281", "gene_names_uniprotkb": "Hnrnpa3; LOC100911361; LOC120096281; Hnrnpa3; Hnrpa3; LOC120096281", "gene_names_refseq": "Hnrnpa3; Hnrpa3; mBx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEGHDPKEPEQLRKLFIGGL", "down_seq": "FETTDDSLREHFEKWGTLTD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6URK4", "url": "https://www.uniprot.org/uniprotkb/Q6URK4" } ], "site_lbl": "Ser43" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "376", "end_pos": "376" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P54921-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P54921-1", "length": 295, "uniprot_id": "SNAA_RAT", "protein_name": "Alpha-soluble NSF attachment protein", "refseq_ac": "NP_542152", "refseq_name": "alpha-soluble NSF attachment protein", "gene_name": "Napa", "gene_names_uniprotkb": "Napa; Snapa; Snap", "gene_names_refseq": "Napa; alpha-SNAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P54921", "url": "https://www.uniprot.org/uniprotkb/P54921" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P54921", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P54921" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] } ], "crossref": [ { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P54921", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P54921", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "P54921", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P54921" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P54921-1.195.195", "start_pos": 195, "end_pos": 195, "uniprot_canonical_ac": "P54921-1", "length": 295, "uniprot_id": "SNAA_RAT", "protein_name": "Alpha-soluble NSF attachment protein", "refseq_ac": "NP_542152", "refseq_name": "alpha-soluble NSF attachment protein", "gene_name": "Napa", "gene_names_uniprotkb": "Napa; Snapa; Snap", "gene_names_refseq": "Napa; alpha-SNAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P54921", "url": "https://www.uniprot.org/uniprotkb/P54921" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P54921", "url": "https://www.uniprot.org/uniprotkb/P54921", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEQYQKAIDIYEQVGTSAMD", "down_seq": "PLLKYSAKDYFFKAALCHFC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P54921", "url": "https://www.uniprot.org/uniprotkb/P54921" } ], "site_lbl": "Ser195" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P54921-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "P54921-1", "length": 295, "uniprot_id": "SNAA_RAT", "protein_name": "Alpha-soluble NSF attachment protein", "refseq_ac": "NP_542152", "refseq_name": "alpha-soluble NSF attachment protein", "gene_name": "Napa", "gene_names_uniprotkb": "Napa; Snapa; Snap", "gene_names_refseq": "Napa; alpha-SNAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P54921", "url": "https://www.uniprot.org/uniprotkb/P54921" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P54921", "url": "https://www.uniprot.org/uniprotkb/P54921", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KQAEAMALLAEAERKVKNSQ", "down_seq": "FFSGLFGGSSKIEEACEIYA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P54921", "url": "https://www.uniprot.org/uniprotkb/P54921" } ], "site_lbl": "Ser26" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P54921-1.29.29", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P54921-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "P54921-1", "length": 295, "uniprot_id": "SNAA_RAT", "protein_name": "Alpha-soluble NSF attachment protein", "refseq_ac": "NP_542152", "refseq_name": "alpha-soluble NSF attachment protein", "gene_name": "Napa", "gene_names_uniprotkb": "Napa; Snapa; Snap", "gene_names_refseq": "Napa; alpha-SNAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P54921", "url": "https://www.uniprot.org/uniprotkb/P54921" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P54921", "url": "https://www.uniprot.org/uniprotkb/P54921", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAMALLAEAERKVKNSQSFF", "down_seq": "GLFGGSSKIEEACEIYARAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P54921", "url": "https://www.uniprot.org/uniprotkb/P54921" } ], "site_lbl": "Ser29" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "29", "end_pos": "29" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P54921-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q920G0-1.151.151", "start_pos": 151, "end_pos": 151, "uniprot_canonical_ac": "Q920G0-1", "length": 358, "uniprot_id": "SKAP2_RAT", "protein_name": "Src kinase-associated phosphoprotein 2", "refseq_ac": "NP_569097", "refseq_name": "src kinase-associated phosphoprotein 2", "gene_name": "Skap2", "gene_names_uniprotkb": "Skap2; Scap2; Skap55r", "gene_names_refseq": "Scap2; Scap55r; Skap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "SFLGFEWQKRWCALSKTVFY", "down_seq": "YGSDKDKQQKGEFAIEGYDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "site_lbl": "Tyr151" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q920G0-1.197.197", "start_pos": 197, "end_pos": 197, "uniprot_canonical_ac": "Q920G0-1", "length": 358, "uniprot_id": "SKAP2_RAT", "protein_name": "Src kinase-associated phosphoprotein 2", "refseq_ac": "NP_569097", "refseq_name": "src kinase-associated phosphoprotein 2", "gene_name": "Skap2", "gene_names_uniprotkb": "Skap2; Scap2; Skap55r", "gene_names_refseq": "Scap2; Scap55r; Skap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LRKDAKKDCCFEICAPDKRI", "down_seq": "QFTAASPKDAEEWVQQLKFI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "site_lbl": "Tyr197" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q920G0-1.223.223", "start_pos": 223, "end_pos": 223, "uniprot_canonical_ac": "Q920G0-1", "length": 358, "uniprot_id": "SKAP2_RAT", "protein_name": "Src kinase-associated phosphoprotein 2", "refseq_ac": "NP_569097", "refseq_name": "src kinase-associated phosphoprotein 2", "gene_name": "Skap2", "gene_names_uniprotkb": "Skap2; Scap2; Skap55r", "gene_names_refseq": "Scap2; Scap55r; Skap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPKDAEEWVQQLKFILQDMG", "down_seq": "DVIPEDEDEKGDLYDDVDHP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "site_lbl": "Ser223" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q920G0-1.260.260", "start_pos": 260, "end_pos": 260, "uniprot_canonical_ac": "Q920G0-1", "length": 358, "uniprot_id": "SKAP2_RAT", "protein_name": "Src kinase-associated phosphoprotein 2", "refseq_ac": "NP_569097", "refseq_name": "src kinase-associated phosphoprotein 2", "gene_name": "Skap2", "gene_names_uniprotkb": "Skap2; Scap2; Skap55r", "gene_names_refseq": "Scap2; Scap55r; Skap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VDHPVPVSSPQRSQPIDDEI", "down_seq": "EELPEEEEDTASVKMDEQGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "site_lbl": "Tyr260" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q920G0-1.272.272", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q920G0-1.272.272", "start_pos": 272, "end_pos": 272, "uniprot_canonical_ac": "Q920G0-1", "length": 358, "uniprot_id": "SKAP2_RAT", "protein_name": "Src kinase-associated phosphoprotein 2", "refseq_ac": "NP_569097", "refseq_name": "src kinase-associated phosphoprotein 2", "gene_name": "Skap2", "gene_names_uniprotkb": "Skap2; Scap2; Skap55r", "gene_names_refseq": "Scap2; Scap55r; Skap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SQPIDDEIYEELPEEEEDTA", "down_seq": "VKMDEQGKGSRDSVQHPSGD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "site_lbl": "Ser272" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q920G0-1.260.260", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q920G0-1.282.282", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q920G0-1.285.285", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q920G0-1.282.282", "start_pos": 282, "end_pos": 282, "uniprot_canonical_ac": "Q920G0-1", "length": 358, "uniprot_id": "SKAP2_RAT", "protein_name": "Src kinase-associated phosphoprotein 2", "refseq_ac": "NP_569097", "refseq_name": "src kinase-associated phosphoprotein 2", "gene_name": "Skap2", "gene_names_uniprotkb": "Skap2; Scap2; Skap55r", "gene_names_refseq": "Scap2; Scap55r; Skap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELPEEEEDTASVKMDEQGKG", "down_seq": "RDSVQHPSGDKSTDYANFYQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "site_lbl": "Ser282" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q920G0-1.272.272", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q920G0-1.285.285", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q920G0-1.285.285", "start_pos": 285, "end_pos": 285, "uniprot_canonical_ac": "Q920G0-1", "length": 358, "uniprot_id": "SKAP2_RAT", "protein_name": "Src kinase-associated phosphoprotein 2", "refseq_ac": "NP_569097", "refseq_name": "src kinase-associated phosphoprotein 2", "gene_name": "Skap2", "gene_names_uniprotkb": "Skap2; Scap2; Skap55r", "gene_names_refseq": "Scap2; Scap55r; Skap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEEEDTASVKMDEQGKGSRD", "down_seq": "VQHPSGDKSTDYANFYQGLW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "site_lbl": "Ser285" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q920G0-1.272.272", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q920G0-1.282.282", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q920G0-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "Q920G0-1", "length": 358, "uniprot_id": "SKAP2_RAT", "protein_name": "Src kinase-associated phosphoprotein 2", "refseq_ac": "NP_569097", "refseq_name": "src kinase-associated phosphoprotein 2", "gene_name": "Skap2", "gene_names_uniprotkb": "Skap2; Scap2; Skap55r", "gene_names_refseq": "Scap2; Scap55r; Skap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MPNPG", "down_seq": "TSSPGSIPEEIRNLLADVET", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "site_lbl": "Ser6" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q920G0-1.9.9", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q920G0-1.75.75", "start_pos": 75, "end_pos": 75, "uniprot_canonical_ac": "Q920G0-1", "length": 358, "uniprot_id": "SKAP2_RAT", "protein_name": "Src kinase-associated phosphoprotein 2", "refseq_ac": "NP_569097", "refseq_name": "src kinase-associated phosphoprotein 2", "gene_name": "Skap2", "gene_names_uniprotkb": "Skap2; Scap2; Skap55r", "gene_names_refseq": "Scap2; Scap55r; Skap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VKSVYPQEFQDKGDAEEGDE", "down_seq": "DDPFAGPPDTISLASERYDK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "site_lbl": "Tyr75" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q920G0-1.87.87", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q920G0-1.90.90", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q920G0-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "Q920G0-1", "length": 358, "uniprot_id": "SKAP2_RAT", "protein_name": "Src kinase-associated phosphoprotein 2", "refseq_ac": "NP_569097", "refseq_name": "src kinase-associated phosphoprotein 2", "gene_name": "Skap2", "gene_names_uniprotkb": "Skap2; Scap2; Skap55r", "gene_names_refseq": "Scap2; Scap55r; Skap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GDAEEGDEYDDPFAGPPDTI", "down_seq": "LASERYDKDDDGPSDGNQFP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "site_lbl": "Ser87" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q920G0-1.75.75", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q920G0-1.90.90", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q920G0-1.90.90", "start_pos": 90, "end_pos": 90, "uniprot_canonical_ac": "Q920G0-1", "length": 358, "uniprot_id": "SKAP2_RAT", "protein_name": "Src kinase-associated phosphoprotein 2", "refseq_ac": "NP_569097", "refseq_name": "src kinase-associated phosphoprotein 2", "gene_name": "Skap2", "gene_names_uniprotkb": "Skap2; Scap2; Skap55r", "gene_names_refseq": "Scap2; Scap55r; Skap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEGDEYDDPFAGPPDTISLA", "down_seq": "ERYDKDDDGPSDGNQFPPIA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "site_lbl": "Ser90" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q920G0-1.75.75", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q920G0-1.87.87", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q920G0-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "Q920G0-1", "length": 358, "uniprot_id": "SKAP2_RAT", "protein_name": "Src kinase-associated phosphoprotein 2", "refseq_ac": "NP_569097", "refseq_name": "src kinase-associated phosphoprotein 2", "gene_name": "Skap2", "gene_names_uniprotkb": "Skap2; Scap2; Skap55r", "gene_names_refseq": "Scap2; Scap55r; Skap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MPNPGSTS", "down_seq": "PGSIPEEIRNLLADVETFVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q920G0", "url": "https://www.uniprot.org/uniprotkb/Q920G0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q920G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q920G0" } ], "site_lbl": "Ser9" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "151", "end_pos": "151" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "282", "end_pos": "282" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q920G0-1.6.6", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIM4-1.313.313", "start_pos": 313, "end_pos": 313, "uniprot_canonical_ac": "Q9JIM4-1", "length": 339, "uniprot_id": "DUS12_RAT", "protein_name": "Dual specificity protein phosphatase 12", "refseq_ac": "NP_071584", "refseq_name": "dual specificity protein phosphatase 12", "gene_name": "Dusp12", "gene_names_uniprotkb": "Dusp12; Gkap", "gene_names_refseq": "Dusp12; GKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIM4", "url": "https://www.uniprot.org/uniprotkb/Q9JIM4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SAKLGSFNWYGEQCSCGRWI", "down_seq": "PAFQIHKNRVDEVKTLPALG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr313", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "313", "end_pos": "313" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "334", "end_pos": "334" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIM4-1.334.334", "start_pos": 334, "end_pos": 334, "uniprot_canonical_ac": "Q9JIM4-1", "length": 339, "uniprot_id": "DUS12_RAT", "protein_name": "Dual specificity protein phosphatase 12", "refseq_ac": "NP_071584", "refseq_name": "dual specificity protein phosphatase 12", "gene_name": "Dusp12", "gene_names_uniprotkb": "Dusp12; Gkap", "gene_names_refseq": "Dusp12; GKAP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIM4", "url": "https://www.uniprot.org/uniprotkb/Q9JIM4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JIM4", "url": "https://www.uniprot.org/uniprotkb/Q9JIM4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PAFQIHKNRVDEVKTLPALG", "down_seq": "QTKKP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIM4", "url": "https://www.uniprot.org/uniprotkb/Q9JIM4" } ], "site_lbl": "Ser334" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "313", "end_pos": "313" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "334", "end_pos": "334" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PQJ5-1.1023.1023", "start_pos": 1023, "end_pos": 1023, "uniprot_canonical_ac": "Q5PQJ5-1", "length": 1266, "uniprot_id": "RHG29_RAT", "protein_name": "Rho GTPase-activating protein 29", "refseq_ac": "NP_001009405", "refseq_name": "rho GTPase-activating protein 29 isoform 3", "gene_name": "Arhgap29", "gene_names_uniprotkb": "Arhgap29; Abca4", "gene_names_refseq": "Arhgap29; B130017i01rik; RGD1306185", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SDRVANSVQRPTPRTRLRPV", "down_seq": "LPVDRLLLLAGSPTERSSRN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "site_lbl": "Ser1023" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "1149", "end_pos": "1149" }, { "start_pos": "1151", "end_pos": "1151" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "915", "end_pos": "915" }, { "start_pos": "951", "end_pos": "951" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PQJ5-1.1149.1149", "start_pos": 1149, "end_pos": 1149, "uniprot_canonical_ac": "Q5PQJ5-1", "length": 1266, "uniprot_id": "RHG29_RAT", "protein_name": "Rho GTPase-activating protein 29", "refseq_ac": "NP_001009405", "refseq_name": "rho GTPase-activating protein 29 isoform 3", "gene_name": "Arhgap29", "gene_names_uniprotkb": "Arhgap29; Abca4", "gene_names_refseq": "Arhgap29; B130017i01rik; RGD1306185", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSKAHADPARSARDTSEHSS", "down_seq": "DSCPVAAVRAPRTLQPQHWT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "site_lbl": "Ser1149" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "1149", "end_pos": "1149" }, { "start_pos": "1151", "end_pos": "1151" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "915", "end_pos": "915" }, { "start_pos": "951", "end_pos": "951" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q5PQJ5-1.1151.1151", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PQJ5-1.1151.1151", "start_pos": 1151, "end_pos": 1151, "uniprot_canonical_ac": "Q5PQJ5-1", "length": 1266, "uniprot_id": "RHG29_RAT", "protein_name": "Rho GTPase-activating protein 29", "refseq_ac": "NP_001009405", "refseq_name": "rho GTPase-activating protein 29 isoform 3", "gene_name": "Arhgap29", "gene_names_uniprotkb": "Arhgap29; Abca4", "gene_names_refseq": "Arhgap29; B130017i01rik; RGD1306185", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KAHADPARSARDTSEHSSSD", "down_seq": "CPVAAVRAPRTLQPQHWTTF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "site_lbl": "Ser1151" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "1149", "end_pos": "1149" }, { "start_pos": "1151", "end_pos": "1151" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "915", "end_pos": "915" }, { "start_pos": "951", "end_pos": "951" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q5PQJ5-1.1149.1149", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PQJ5-1.166.166", "start_pos": 166, "end_pos": 166, "uniprot_canonical_ac": "Q5PQJ5-1", "length": 1266, "uniprot_id": "RHG29_RAT", "protein_name": "Rho GTPase-activating protein 29", "refseq_ac": "NP_001009405", "refseq_name": "rho GTPase-activating protein 29 isoform 3", "gene_name": "Arhgap29", "gene_names_uniprotkb": "Arhgap29; Abca4", "gene_names_refseq": "Arhgap29; B130017i01rik; RGD1306185", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" }, { "database": "iPTMnet", "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LMGDVGNDSILRLPISRESK", "down_seq": "FENISMDSVDLPHEKGNFSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5" } ], "site_lbl": "Ser166" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "1149", "end_pos": "1149" }, { "start_pos": "1151", "end_pos": "1151" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "915", "end_pos": "915" }, { "start_pos": "951", "end_pos": "951" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q5PQJ5-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q5PQJ5-1.174.174", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q5PQJ5-1.185.185", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5PQJ5-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "Q5PQJ5-1", "length": 1266, "uniprot_id": "RHG29_RAT", "protein_name": "Rho GTPase-activating protein 29", "refseq_ac": "NP_001009405", "refseq_name": "rho GTPase-activating protein 29 isoform 3", "gene_name": "Arhgap29", "gene_names_uniprotkb": "Arhgap29; Abca4", "gene_names_refseq": "Arhgap29; B130017i01rik; RGD1306185", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" }, { "database": "iPTMnet", "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GNDSILRLPISRESKSFENI", "down_seq": "MDSVDLPHEKGNFSPIELDN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5" } ], "site_lbl": "Ser171" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "1149", "end_pos": "1149" }, { "start_pos": "1151", "end_pos": "1151" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "915", "end_pos": "915" }, { "start_pos": "951", "end_pos": "951" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q5PQJ5-1.166.166", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q5PQJ5-1.174.174", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q5PQJ5-1.185.185", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5PQJ5-1.174.174", "start_pos": 174, "end_pos": 174, "uniprot_canonical_ac": "Q5PQJ5-1", "length": 1266, "uniprot_id": "RHG29_RAT", "protein_name": "Rho GTPase-activating protein 29", "refseq_ac": "NP_001009405", "refseq_name": "rho GTPase-activating protein 29 isoform 3", "gene_name": "Arhgap29", "gene_names_uniprotkb": "Arhgap29; Abca4", "gene_names_refseq": "Arhgap29; B130017i01rik; RGD1306185", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" }, { "database": "iPTMnet", "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SILRLPISRESKSFENISMD", "down_seq": "VDLPHEKGNFSPIELDNLLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5" } ], "site_lbl": "Ser174" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "1149", "end_pos": "1149" }, { "start_pos": "1151", "end_pos": "1151" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "915", "end_pos": "915" }, { "start_pos": "951", "end_pos": "951" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q5PQJ5-1.166.166", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q5PQJ5-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q5PQJ5-1.185.185", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5PQJ5-1.185.185", "start_pos": 185, "end_pos": 185, "uniprot_canonical_ac": "Q5PQJ5-1", "length": 1266, "uniprot_id": "RHG29_RAT", "protein_name": "Rho GTPase-activating protein 29", "refseq_ac": "NP_001009405", "refseq_name": "rho GTPase-activating protein 29 isoform 3", "gene_name": "Arhgap29", "gene_names_uniprotkb": "Arhgap29; Abca4", "gene_names_refseq": "Arhgap29; B130017i01rik; RGD1306185", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" }, { "database": "iPTMnet", "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSFENISMDSVDLPHEKGNF", "down_seq": "PIELDNLLLKNSDSIELALS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5" } ], "site_lbl": "Ser185" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "1149", "end_pos": "1149" }, { "start_pos": "1151", "end_pos": "1151" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "915", "end_pos": "915" }, { "start_pos": "951", "end_pos": "951" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q5PQJ5-1.166.166", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q5PQJ5-1.171.171", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q5PQJ5-1.174.174", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5PQJ5-1.496.496", "start_pos": 496, "end_pos": 496, "uniprot_canonical_ac": "Q5PQJ5-1", "length": 1266, "uniprot_id": "RHG29_RAT", "protein_name": "Rho GTPase-activating protein 29", "refseq_ac": "NP_001009405", "refseq_name": "rho GTPase-activating protein 29 isoform 3", "gene_name": "Arhgap29", "gene_names_uniprotkb": "Arhgap29; Abca4", "gene_names_refseq": "Arhgap29; B130017i01rik; RGD1306185", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GNVNKQIASSPQTSGYEPAD", "down_seq": "LEDVARLPDSCHKLEEDRCS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "site_lbl": "Ser496" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "1149", "end_pos": "1149" }, { "start_pos": "1151", "end_pos": "1151" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "915", "end_pos": "915" }, { "start_pos": "951", "end_pos": "951" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q5PQJ5-1.516.516", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PQJ5-1.516.516", "start_pos": 516, "end_pos": 516, "uniprot_canonical_ac": "Q5PQJ5-1", "length": 1266, "uniprot_id": "RHG29_RAT", "protein_name": "Rho GTPase-activating protein 29", "refseq_ac": "NP_001009405", "refseq_name": "rho GTPase-activating protein 29 isoform 3", "gene_name": "Arhgap29", "gene_names_uniprotkb": "Arhgap29; Abca4", "gene_names_refseq": "Arhgap29; B130017i01rik; RGD1306185", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLEDVARLPDSCHKLEEDRC", "down_seq": "NSADMTGPSFIRSWKFGMFS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "site_lbl": "Ser516" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "1149", "end_pos": "1149" }, { "start_pos": "1151", "end_pos": "1151" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "915", "end_pos": "915" }, { "start_pos": "951", "end_pos": "951" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q5PQJ5-1.496.496", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PQJ5-1.549.549", "start_pos": 549, "end_pos": 549, "uniprot_canonical_ac": "Q5PQJ5-1", "length": 1266, "uniprot_id": "RHG29_RAT", "protein_name": "Rho GTPase-activating protein 29", "refseq_ac": "NP_001009405", "refseq_name": "rho GTPase-activating protein 29 isoform 3", "gene_name": "Arhgap29", "gene_names_uniprotkb": "Arhgap29; Abca4", "gene_names_refseq": "Arhgap29; B130017i01rik; RGD1306185", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" }, { "database": "iPTMnet", "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SWKFGMFSDSESTGGSSESR", "down_seq": "LDSESISPGDFHRKLPRTPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5" } ], "site_lbl": "Ser549" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "1149", "end_pos": "1149" }, { "start_pos": "1151", "end_pos": "1151" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "915", "end_pos": "915" }, { "start_pos": "951", "end_pos": "951" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5PQJ5-1.915.915", "start_pos": 915, "end_pos": 915, "uniprot_canonical_ac": "Q5PQJ5-1", "length": 1266, "uniprot_id": "RHG29_RAT", "protein_name": "Rho GTPase-activating protein 29", "refseq_ac": "NP_001009405", "refseq_name": "rho GTPase-activating protein 29 isoform 3", "gene_name": "Arhgap29", "gene_names_uniprotkb": "Arhgap29; Abca4", "gene_names_refseq": "Arhgap29; B130017i01rik; RGD1306185", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" }, { "database": "iPTMnet", "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ANTGAIAPQVDHGCHPKPLL", "down_seq": "PDERDSDHSLKQLFFSSKED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5PQJ5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQJ5" } ], "site_lbl": "Ser915" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "1149", "end_pos": "1149" }, { "start_pos": "1151", "end_pos": "1151" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "915", "end_pos": "915" }, { "start_pos": "951", "end_pos": "951" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5PQJ5-1.951.951", "start_pos": 951, "end_pos": 951, "uniprot_canonical_ac": "Q5PQJ5-1", "length": 1266, "uniprot_id": "RHG29_RAT", "protein_name": "Rho GTPase-activating protein 29", "refseq_ac": "NP_001009405", "refseq_name": "rho GTPase-activating protein 29 isoform 3", "gene_name": "Arhgap29", "gene_names_uniprotkb": "Arhgap29; Abca4", "gene_names_refseq": "Arhgap29; B130017i01rik; RGD1306185", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSKEDIRTMDCESKTFELTT", "down_seq": "FEESERKQNALGKCDAPILD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQJ5", "url": "https://www.uniprot.org/uniprotkb/Q5PQJ5" } ], "site_lbl": "Ser951" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1023", "end_pos": "1023" }, { "start_pos": "1149", "end_pos": "1149" }, { "start_pos": "1151", "end_pos": "1151" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "185", "end_pos": "185" }, { "start_pos": "496", "end_pos": "496" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "915", "end_pos": "915" }, { "start_pos": "951", "end_pos": "951" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54861-1.160.160", "start_pos": 160, "end_pos": 160, "uniprot_canonical_ac": "O54861-1", "length": 825, "uniprot_id": "SORT_RAT", "protein_name": "Sortilin", "refseq_ac": "NP_113955", "refseq_name": "sortilin precursor", "gene_name": "Sort1", "gene_names_uniprotkb": "Sort1", "gene_names_refseq": "Nt3; Nts3; Sort1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SKLYRSEDYGKNFKDITNLI", "down_seq": "NTFIRTEFGMAIGPENSGKV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn160", "evidence": [ { "id": "O54861", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54861#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "809", "end_pos": "809" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "819", "end_pos": "819" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54861-1.272.272", "start_pos": 272, "end_pos": 272, "uniprot_canonical_ac": "O54861-1", "length": 825, "uniprot_id": "SORT_RAT", "protein_name": "Sortilin", "refseq_ac": "NP_113955", "refseq_name": "sortilin precursor", "gene_name": "Sort1", "gene_names_uniprotkb": "Sort1", "gene_names_refseq": "Nt3; Nts3; Sort1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KAVCLAKWGPNNIIFFTTHV", "down_seq": "GSCKADLGALELWRTSDLGK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn272", "evidence": [ { "id": "O54861", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54861#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "809", "end_pos": "809" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "819", "end_pos": "819" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54861-1.404.404", "start_pos": 404, "end_pos": 404, "uniprot_canonical_ac": "O54861-1", "length": 825, "uniprot_id": "SORT_RAT", "protein_name": "Sortilin", "refseq_ac": "NP_113955", "refseq_name": "sortilin precursor", "gene_name": "Sort1", "gene_names_uniprotkb": "Sort1", "gene_names_refseq": "Nt3; Nts3; Sort1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861#ptm_processing" }, { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YSKSLDRHLYTTTGGETDFT", "down_seq": "VTSLRGVYITSTLSEDNSIQ", "glycosylation": [ { "glytoucan_ac": "G60230HH", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-404 ; ASN-404", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn404", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G80920RR", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn404", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn404", "evidence": [ { "id": "O54861", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54861#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "809", "end_pos": "809" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "819", "end_pos": "819" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 2 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 2 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O54861-1.580.580", "start_pos": 580, "end_pos": 580, "uniprot_canonical_ac": "O54861-1", "length": 825, "uniprot_id": "SORT_RAT", "protein_name": "Sortilin", "refseq_ac": "NP_113955", "refseq_name": "sortilin precursor", "gene_name": "Sort1", "gene_names_uniprotkb": "Sort1", "gene_names_refseq": "Nt3; Nts3; Sort1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FSQEPVYFTGLASEPGARSM", "down_seq": "ISIWGFTESFLTRQWVSYTI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn580", "evidence": [ { "id": "O54861", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54861#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "809", "end_pos": "809" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "819", "end_pos": "819" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54861-1.682.682", "start_pos": 682, "end_pos": 682, "uniprot_canonical_ac": "O54861-1", "length": 825, "uniprot_id": "SORT_RAT", "protein_name": "Sortilin", "refseq_ac": "NP_113955", "refseq_name": "sortilin precursor", "gene_name": "Sort1", "gene_names_uniprotkb": "Sort1", "gene_names_refseq": "Nt3; Nts3; Sort1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SICPCSLEDFLCDFGYFRPE", "down_seq": "ASECVEQPELKGHELEFCLY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn682", "evidence": [ { "id": "O54861", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54861#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "809", "end_pos": "809" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "819", "end_pos": "819" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54861-1.96.96", "start_pos": 96, "end_pos": 96, "uniprot_canonical_ac": "O54861-1", "length": 825, "uniprot_id": "SORT_RAT", "protein_name": "Sortilin", "refseq_ac": "NP_113955", "refseq_name": "sortilin precursor", "gene_name": "Sort1", "gene_names_uniprotkb": "Sort1", "gene_names_refseq": "Nt3; Nts3; Sort1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GAPAEDQDCGRLPDFIAKLT", "down_seq": "NTHQHVFDDLSGSVSLSWVG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn96", "evidence": [ { "id": "O54861", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54861#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "809", "end_pos": "809" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "819", "end_pos": "819" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54861-1.809.809", "start_pos": 809, "end_pos": 809, "uniprot_canonical_ac": "O54861-1", "length": 825, "uniprot_id": "SORT_RAT", "protein_name": "Sortilin", "refseq_ac": "NP_113955", "refseq_name": "sortilin precursor", "gene_name": "Sort1", "gene_names_uniprotkb": "Sort1", "gene_names_refseq": "Nt3; Nts3; Sort1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RYSVLQQHAEADGVEALDTA", "down_seq": "HAKSGYHDDSDEDLLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" } ], "site_lbl": "Ser809" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "809", "end_pos": "809" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "819", "end_pos": "819" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O54861-1.813.813", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O54861-1.819.819", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54861-1.813.813", "start_pos": 813, "end_pos": 813, "uniprot_canonical_ac": "O54861-1", "length": 825, "uniprot_id": "SORT_RAT", "protein_name": "Sortilin", "refseq_ac": "NP_113955", "refseq_name": "sortilin precursor", "gene_name": "Sort1", "gene_names_uniprotkb": "Sort1", "gene_names_refseq": "Nt3; Nts3; Sort1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LQQHAEADGVEALDTASHAK", "down_seq": "GYHDDSDEDLLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" } ], "site_lbl": "Ser813" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "809", "end_pos": "809" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "819", "end_pos": "819" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O54861-1.809.809", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O54861-1.819.819", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54861-1.819.819", "start_pos": 819, "end_pos": 819, "uniprot_canonical_ac": "O54861-1", "length": 825, "uniprot_id": "SORT_RAT", "protein_name": "Sortilin", "refseq_ac": "NP_113955", "refseq_name": "sortilin precursor", "gene_name": "Sort1", "gene_names_uniprotkb": "Sort1", "gene_names_refseq": "Nt3; Nts3; Sort1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" }, { "database": "iPTMnet", "id": "O54861", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54861" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O54861", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54861", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ADGVEALDTASHAKSGYHDD", "down_seq": "DEDLLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O54861", "url": "https://www.uniprot.org/uniprotkb/O54861" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O54861", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54861" } ], "site_lbl": "Ser819" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "404", "end_pos": "404" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "809", "end_pos": "809" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "819", "end_pos": "819" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O54861-1.809.809", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O54861-1.813.813", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P53534-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P53534-1", "length": 838, "uniprot_id": "PYGB_RAT", "protein_name": "Glycogen phosphorylase, brain form", "refseq_ac": "NP_037320", "refseq_name": "glycogen phosphorylase, brain form", "gene_name": "Pygb", "gene_names_uniprotkb": "Pygb", "gene_names_refseq": "GLYPHOA; Pygb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P53534", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P53534" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "An O-GlcNAcylomic Approach Reveals ACLY as a Potential Target in Sepsis in the Young Rat.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B", "evidence": [ { "database": "O-GlcNAc Database", "id": "P53534", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P53534" } ], "reference": [ { "type": "PubMed", "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162" } ] } ], "crossref": [ { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P53534", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P53534", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162", "database": "PubMed", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "P53534", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P53534" }, { "id": "34502162", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34502162" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "524", "end_pos": "524" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "P53534-1.15.15", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P53534-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "P53534-1", "length": 838, "uniprot_id": "PYGB_RAT", "protein_name": "Glycogen phosphorylase, brain form", "refseq_ac": "NP_037320", "refseq_name": "glycogen phosphorylase, brain form", "gene_name": "Pygb", "gene_names_uniprotkb": "Pygb", "gene_names_refseq": "GLYPHOA; Pygb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534" }, { "database": "iPTMnet", "id": "P53534", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53534" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P53534", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53534", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAKPLTDSERQKQI", "down_seq": "VRGIAGLGDVAEVRKSFNRH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P53534", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53534" } ], "site_lbl": "Ser15" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "524", "end_pos": "524" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P53534-1.0.0", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P53534-1.197.197", "start_pos": 197, "end_pos": 197, "uniprot_canonical_ac": "P53534-1", "length": 838, "uniprot_id": "PYGB_RAT", "protein_name": "Glycogen phosphorylase, brain form", "refseq_ac": "NP_037320", "refseq_name": "glycogen phosphorylase, brain form", "gene_name": "Pygb", "gene_names_uniprotkb": "Pygb", "gene_names_refseq": "GLYPHOA; Pygb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VEEADDWLRYGNPWEKARPE", "down_seq": "MLPVHFYGRVEHTPNGVLWL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534" } ], "site_lbl": "Tyr197" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "524", "end_pos": "524" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P53534-1.473.473", "start_pos": 473, "end_pos": 473, "uniprot_canonical_ac": "P53534-1", "length": 838, "uniprot_id": "PYGB_RAT", "protein_name": "Glycogen phosphorylase, brain form", "refseq_ac": "NP_037320", "refseq_name": "glycogen phosphorylase, brain form", "gene_name": "Pygb", "gene_names_uniprotkb": "Pygb", "gene_names_refseq": "GLYPHOA; Pygb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VNGVARIHSEIVKQSVFKDF", "down_seq": "ELEPEKFQNKTNGITPRRWL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534" } ], "site_lbl": "Tyr473" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "524", "end_pos": "524" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P53534-1.524.524", "start_pos": 524, "end_pos": 524, "uniprot_canonical_ac": "P53534-1", "length": 838, "uniprot_id": "PYGB_RAT", "protein_name": "Glycogen phosphorylase, brain form", "refseq_ac": "NP_037320", "refseq_name": "glycogen phosphorylase, brain form", "gene_name": "Pygb", "gene_names_uniprotkb": "Pygb", "gene_names_refseq": "GLYPHOA; Pygb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534" }, { "database": "iPTMnet", "id": "P53534", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53534" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P53534", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53534", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IVERIGEGFLTDLSQLKKLL", "down_seq": "LVDDEAFIRDVAKVKQENKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P53534", "url": "https://www.uniprot.org/uniprotkb/P53534" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P53534", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P53534" } ], "site_lbl": "Ser524" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "524", "end_pos": "524" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6PST4-1.217.217", "start_pos": 217, "end_pos": 217, "uniprot_canonical_ac": "Q6PST4-1", "length": 558, "uniprot_id": "ATLA1_RAT", "protein_name": "Atlastin-1", "refseq_ac": "NP_001009831", "refseq_name": "atlastin-1", "gene_name": "Atl1", "gene_names_uniprotkb": "Atl1; Spg3a", "gene_names_refseq": "Atl1; Spg3a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "SPG3A protein atlastin-1 is enriched in growth cones and promotes axon elongation during neuronal development.", "journal": "Human molecular genetics", "date": "2006", "authors": "Zhu PP, Soderblom C, Tao-Cheng JH, Stadler J, Blackstone C", "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" }, { "database": "RefSeq", "id": "NP_001009831", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001009831" } ], "reference": [ { "type": "PubMed", "id": "16537571", "url": "https://glygen.org/publication/PubMed/16537571" } ] } ], "crossref": [ { "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16537571", "url": "https://glygen.org/publication/PubMed/16537571", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "GRLAMEETFLKPFQSLIFLV", "down_seq": "DWSFPYEFSYGADGGAKFLE", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "Q", "comment": "Loss of GTPase activity. No effect on oligomerization.", "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" }, { "database": "PubMed", "id": "16537571", "url": "https://glygen.org/publication/PubMed/16537571" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "258", "end_pos": "258" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "23", "end_pos": "23" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6PST4-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "Q6PST4-1", "length": 558, "uniprot_id": "ATLA1_RAT", "protein_name": "Atlastin-1", "refseq_ac": "NP_001009831", "refseq_name": "atlastin-1", "gene_name": "Atl1", "gene_names_uniprotkb": "Atl1; Spg3a", "gene_names_refseq": "Atl1; Spg3a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "SPG3A protein atlastin-1 is enriched in growth cones and promotes axon elongation during neuronal development.", "journal": "Human molecular genetics", "date": "2006", "authors": "Zhu PP, Soderblom C, Tao-Cheng JH, Stadler J, Blackstone C", "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" }, { "database": "RefSeq", "id": "NP_001009831", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001009831" } ], "reference": [ { "type": "PubMed", "id": "16537571", "url": "https://glygen.org/publication/PubMed/16537571" } ] } ], "crossref": [ { "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16537571", "url": "https://glygen.org/publication/PubMed/16537571", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "WSFPYEFSYGADGGAKFLEK", "down_seq": "LKVSGNQHEELQNVRKHIHS", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "C", "comment": "Loss of GTPase activity. No effect on oligomerization.", "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" }, { "database": "PubMed", "id": "16537571", "url": "https://glygen.org/publication/PubMed/16537571" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "258", "end_pos": "258" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "23", "end_pos": "23" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q6PST4-1.258.258", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6PST4-1.258.258", "start_pos": 258, "end_pos": 258, "uniprot_canonical_ac": "Q6PST4-1", "length": 558, "uniprot_id": "ATLA1_RAT", "protein_name": "Atlastin-1", "refseq_ac": "NP_001009831", "refseq_name": "atlastin-1", "gene_name": "Atl1", "gene_names_uniprotkb": "Atl1; Spg3a", "gene_names_refseq": "Atl1; Spg3a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "SPG3A protein atlastin-1 is enriched in growth cones and promotes axon elongation during neuronal development.", "journal": "Human molecular genetics", "date": "2006", "authors": "Zhu PP, Soderblom C, Tao-Cheng JH, Stadler J, Blackstone C", "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" }, { "database": "RefSeq", "id": "NP_001009831", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001009831" } ], "reference": [ { "type": "PubMed", "id": "16537571", "url": "https://glygen.org/publication/PubMed/16537571" } ] } ], "crossref": [ { "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16537571", "url": "https://glygen.org/publication/PubMed/16537571", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "KRLKVSGNQHEELQNVRKHI", "down_seq": "SCFTNISCFLLPHPGLKVAT", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "R", "comment": "Loss of GTPase activity. No effect on oligomerization.", "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" }, { "database": "PubMed", "id": "16537571", "url": "https://glygen.org/publication/PubMed/16537571" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "258", "end_pos": "258" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "23", "end_pos": "23" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q6PST4-1.239.239", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6PST4-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "Q6PST4-1", "length": 558, "uniprot_id": "ATLA1_RAT", "protein_name": "Atlastin-1", "refseq_ac": "NP_001009831", "refseq_name": "atlastin-1", "gene_name": "Atl1", "gene_names_uniprotkb": "Atl1; Spg3a", "gene_names_refseq": "Atl1; Spg3a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" }, { "database": "iPTMnet", "id": "Q6PST4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PST4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6PST4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PST4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAKSRRDRN", "down_seq": "WGGFSEKSSDWSSEEEEPVR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6PST4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PST4" } ], "site_lbl": "Ser10" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "258", "end_pos": "258" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "23", "end_pos": "23" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q6PST4-1.22.22", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q6PST4-1.23.23", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6PST4-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "Q6PST4-1", "length": 558, "uniprot_id": "ATLA1_RAT", "protein_name": "Atlastin-1", "refseq_ac": "NP_001009831", "refseq_name": "atlastin-1", "gene_name": "Atl1", "gene_names_uniprotkb": "Atl1; Spg3a", "gene_names_refseq": "Atl1; Spg3a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" }, { "database": "iPTMnet", "id": "Q6PST4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PST4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6PST4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PST4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKSRRDRNSWGGFSEKSSDW", "down_seq": "SEEEEPVRKAGPVQVLIVKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6PST4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PST4" } ], "site_lbl": "Ser22" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "258", "end_pos": "258" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "23", "end_pos": "23" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q6PST4-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q6PST4-1.23.23", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6PST4-1.23.23", "start_pos": 23, "end_pos": 23, "uniprot_canonical_ac": "Q6PST4-1", "length": 558, "uniprot_id": "ATLA1_RAT", "protein_name": "Atlastin-1", "refseq_ac": "NP_001009831", "refseq_name": "atlastin-1", "gene_name": "Atl1", "gene_names_uniprotkb": "Atl1; Spg3a", "gene_names_refseq": "Atl1; Spg3a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" }, { "database": "iPTMnet", "id": "Q6PST4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PST4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6PST4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PST4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSRRDRNSWGGFSEKSSDWS", "down_seq": "EEEEPVRKAGPVQVLIVKDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6PST4", "url": "https://www.uniprot.org/uniprotkb/Q6PST4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6PST4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6PST4" } ], "site_lbl": "Ser23" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "217", "end_pos": "217" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "258", "end_pos": "258" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "23", "end_pos": "23" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q6PST4-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q6PST4-1.22.22", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B1H267-1.193.193", "start_pos": 193, "end_pos": 193, "uniprot_canonical_ac": "B1H267-1", "length": 404, "uniprot_id": "SNX5_RAT", "protein_name": "Sorting nexin-5", "refseq_ac": "NP_001386227", "refseq_name": "sorting nexin-5", "gene_name": "Snx5", "gene_names_uniprotkb": "Snx5", "gene_names_refseq": "Snx5", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B1H267", "url": "https://www.uniprot.org/uniprotkb/B1H267" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B1H267", "url": "https://www.uniprot.org/uniprotkb/B1H267", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVRRKNTKEMFGGFFKSVVK", "down_seq": "ADEVLFSGVKEVDDFFEQEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B1H267", "url": "https://www.uniprot.org/uniprotkb/B1H267" } ], "site_lbl": "Ser193" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "193", "end_pos": "193" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q2PQA9-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q2PQA9-1", "length": 963, "uniprot_id": "KINH_RAT", "protein_name": "Kinesin-1 heavy chain", "refseq_ac": "NP_476550", "refseq_name": "kinesin-1 heavy chain", "gene_name": "Kif5b", "gene_names_uniprotkb": "Kif5b; Khc", "gene_names_refseq": "Khc; Kif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q2PQA9", "url": "https://www.uniprot.org/uniprotkb/Q2PQA9" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q2PQA9", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q2PQA9" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q2PQA9", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q2PQA9", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "Q2PQA9", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q2PQA9" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "933", "end_pos": "933" }, { "start_pos": "945", "end_pos": "945" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2PQA9-1.933.933", "start_pos": 933, "end_pos": 933, "uniprot_canonical_ac": "Q2PQA9-1", "length": 963, "uniprot_id": "KINH_RAT", "protein_name": "Kinesin-1 heavy chain", "refseq_ac": "NP_476550", "refseq_name": "kinesin-1 heavy chain", "gene_name": "Kif5b", "gene_names_uniprotkb": "Kif5b; Khc", "gene_names_refseq": "Khc; Kif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q2PQA9", "url": "https://www.uniprot.org/uniprotkb/Q2PQA9" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q2PQA9", "url": "https://www.uniprot.org/uniprotkb/Q2PQA9" }, { "database": "iPTMnet", "id": "Q2PQA9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2PQA9" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q2PQA9", "url": "https://www.uniprot.org/uniprotkb/Q2PQA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q2PQA9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2PQA9", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRGHSAQIAKPIRPGQHPAA", "down_seq": "PTHPGAVRGGGSFVQNNQPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q2PQA9", "url": "https://www.uniprot.org/uniprotkb/Q2PQA9" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q2PQA9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2PQA9" } ], "site_lbl": "Ser933" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "933", "end_pos": "933" }, { "start_pos": "945", "end_pos": "945" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q2PQA9-1.945.945", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2PQA9-1.945.945", "start_pos": 945, "end_pos": 945, "uniprot_canonical_ac": "Q2PQA9-1", "length": 963, "uniprot_id": "KINH_RAT", "protein_name": "Kinesin-1 heavy chain", "refseq_ac": "NP_476550", "refseq_name": "kinesin-1 heavy chain", "gene_name": "Kif5b", "gene_names_uniprotkb": "Kif5b; Khc", "gene_names_refseq": "Khc; Kif5b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q2PQA9", "url": "https://www.uniprot.org/uniprotkb/Q2PQA9" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q2PQA9", "url": "https://www.uniprot.org/uniprotkb/Q2PQA9", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RPGQHPAASPTHPGAVRGGG", "down_seq": "FVQNNQPVGLRGGGGKQA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q2PQA9", "url": "https://www.uniprot.org/uniprotkb/Q2PQA9" } ], "site_lbl": "Ser945" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "933", "end_pos": "933" }, { "start_pos": "945", "end_pos": "945" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q2PQA9-1.933.933", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "F1LQX4-1.570.570", "start_pos": 570, "end_pos": 570, "uniprot_canonical_ac": "F1LQX4-1", "length": 814, "uniprot_id": "RHG44_RAT", "protein_name": "Rho GTPase-activating protein 44", "refseq_ac": "NP_001406525", "refseq_name": "rho GTPase-activating protein 44", "gene_name": "Arhgap44", "gene_names_uniprotkb": "Arhgap44; Rich2", "gene_names_refseq": "Arhgap44; RGD1305664; RICH-2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SELAAPLPSPLPEQVPDSPA", "down_seq": "PAPALSPSGASLQPTPERPS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr570", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "570", "end_pos": "570" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "682", "end_pos": "682" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "291", "end_pos": "291" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "805", "end_pos": "805" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "F1LQX4-1.585.585", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "F1LQX4-1.585.585", "start_pos": 585, "end_pos": 585, "uniprot_canonical_ac": "F1LQX4-1", "length": 814, "uniprot_id": "RHG44_RAT", "protein_name": "Rho GTPase-activating protein 44", "refseq_ac": "NP_001406525", "refseq_name": "rho GTPase-activating protein 44", "gene_name": "Arhgap44", "gene_names_uniprotkb": "Arhgap44; Rich2", "gene_names_refseq": "Arhgap44; RGD1305664; RICH-2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PDSPATPAPALSPSGASLQP", "down_seq": "PERPSVSKSKELSPGSGQKG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr585", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "570", "end_pos": "570" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "682", "end_pos": "682" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "291", "end_pos": "291" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "805", "end_pos": "805" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "F1LQX4-1.570.570", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "F1LQX4-1.678.678", "start_pos": 678, "end_pos": 678, "uniprot_canonical_ac": "F1LQX4-1", "length": 814, "uniprot_id": "RHG44_RAT", "protein_name": "Rho GTPase-activating protein 44", "refseq_ac": "NP_001406525", "refseq_name": "rho GTPase-activating protein 44", "gene_name": "Arhgap44", "gene_names_uniprotkb": "Arhgap44; Rich2", "gene_names_refseq": "Arhgap44; RGD1305664; RICH-2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QPGTVSDQPTGQPSPVSLSP", "down_seq": "PPSTPSPYGLSYPPGYSMAS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr678", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "570", "end_pos": "570" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "682", "end_pos": "682" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "291", "end_pos": "291" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "805", "end_pos": "805" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "F1LQX4-1.682.682", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "F1LQX4-1.682.682", "start_pos": 682, "end_pos": 682, "uniprot_canonical_ac": "F1LQX4-1", "length": 814, "uniprot_id": "RHG44_RAT", "protein_name": "Rho GTPase-activating protein 44", "refseq_ac": "NP_001406525", "refseq_name": "rho GTPase-activating protein 44", "gene_name": "Arhgap44", "gene_names_uniprotkb": "Arhgap44; Rich2", "gene_names_refseq": "Arhgap44; RGD1305664; RICH-2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VSDQPTGQPSPVSLSPTPPS", "down_seq": "PSPYGLSYPPGYSMASGQLS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr682", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "570", "end_pos": "570" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "682", "end_pos": "682" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "291", "end_pos": "291" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "805", "end_pos": "805" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "F1LQX4-1.678.678", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "F1LQX4-1.291.291", "start_pos": 291, "end_pos": 291, "uniprot_canonical_ac": "F1LQX4-1", "length": 814, "uniprot_id": "RHG44_RAT", "protein_name": "Rho GTPase-activating protein 44", "refseq_ac": "NP_001406525", "refseq_name": "rho GTPase-activating protein 44", "gene_name": "Arhgap44", "gene_names_uniprotkb": "Arhgap44; Rich2", "gene_names_refseq": "Arhgap44; RGD1305664; RICH-2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Dynamic recruitment of the curvature-sensitive protein ArhGAP44 to nanoscale membrane deformations limits exploratory filopodia initiation in neurons.", "journal": "eLife", "date": "2014", "authors": "Galic M, Tsai FC, Collins SR, Matis M, Bandara S, Meyer T", "evidence": [ { "database": "UniProtKB", "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4" }, { "database": "RefSeq", "id": "NP_001406525", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001406525" } ], "reference": [ { "type": "PubMed", "id": "25498153", "url": "https://glygen.org/publication/PubMed/25498153" } ] } ], "crossref": [ { "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25498153", "url": "https://glygen.org/publication/PubMed/25498153", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "PIEACVTMLLECGMQEEGLF", "down_seq": "VAPSASKLKKLKAALDCCVV", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "M", "comment": "Reduces GAP activity. Decreases inhibition of filopodia formation.", "evidence": [ { "database": "UniProtKB", "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4" }, { "database": "PubMed", "id": "25498153", "url": "https://glygen.org/publication/PubMed/25498153" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "570", "end_pos": "570" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "682", "end_pos": "682" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "291", "end_pos": "291" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "805", "end_pos": "805" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "F1LQX4-1.493.493", "start_pos": 493, "end_pos": 493, "uniprot_canonical_ac": "F1LQX4-1", "length": 814, "uniprot_id": "RHG44_RAT", "protein_name": "Rho GTPase-activating protein 44", "refseq_ac": "NP_001406525", "refseq_name": "rho GTPase-activating protein 44", "gene_name": "Arhgap44", "gene_names_uniprotkb": "Arhgap44; Rich2", "gene_names_refseq": "Arhgap44; RGD1305664; RICH-2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSPDMDPADRRQPEQARRPL", "down_seq": "VATDNMMLEFYKKDGLRKIQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4" } ], "site_lbl": "Ser493" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "570", "end_pos": "570" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "682", "end_pos": "682" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "291", "end_pos": "291" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "805", "end_pos": "805" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "F1LQX4-1.805.805", "start_pos": 805, "end_pos": 805, "uniprot_canonical_ac": "F1LQX4-1", "length": 814, "uniprot_id": "RHG44_RAT", "protein_name": "Rho GTPase-activating protein 44", "refseq_ac": "NP_001406525", "refseq_name": "rho GTPase-activating protein 44", "gene_name": "Arhgap44", "gene_names_uniprotkb": "Arhgap44; Rich2", "gene_names_refseq": "Arhgap44; RGD1305664; RICH-2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4" }, { "database": "iPTMnet", "id": "F1LQX4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F1LQX4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "F1LQX4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F1LQX4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLRLSPLEHARRHSVTDKRD", "down_seq": "EEESESTAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "F1LQX4", "url": "https://www.uniprot.org/uniprotkb/F1LQX4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "F1LQX4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/F1LQX4" } ], "site_lbl": "Ser805" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "570", "end_pos": "570" }, { "start_pos": "585", "end_pos": "585" }, { "start_pos": "678", "end_pos": "678" }, { "start_pos": "682", "end_pos": "682" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "291", "end_pos": "291" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "805", "end_pos": "805" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VIF7-1.111.111", "start_pos": 111, "end_pos": 111, "uniprot_canonical_ac": "Q8VIF7-1", "length": 472, "uniprot_id": "SBP1_RAT", "protein_name": "Methanethiol oxidase", "refseq_ac": "NP_001316822", "refseq_name": "methanethiol oxidase", "gene_name": "Selenbp1", "gene_names_uniprotkb": "Selenbp1; Sbp", "gene_names_refseq": "MTO; Selenbp1; Selenbp2; rSBP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIF7", "url": "https://www.uniprot.org/uniprotkb/Q8VIF7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIF7", "url": "https://www.uniprot.org/uniprotkb/Q8VIF7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RDKLILPSIISSRIYVVDVG", "down_seq": "EPRAPKLHKVIEPNEIHAKC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIF7", "url": "https://www.uniprot.org/uniprotkb/Q8VIF7" } ], "site_lbl": "Ser111" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "467", "end_pos": "467" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIF7-1.467.467", "start_pos": 467, "end_pos": 467, "uniprot_canonical_ac": "Q8VIF7-1", "length": 472, "uniprot_id": "SBP1_RAT", "protein_name": "Methanethiol oxidase", "refseq_ac": "NP_001316822", "refseq_name": "methanethiol oxidase", "gene_name": "Selenbp1", "gene_names_uniprotkb": "Selenbp1; Sbp", "gene_names_refseq": "MTO; Selenbp1; Selenbp2; rSBP", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIF7", "url": "https://www.uniprot.org/uniprotkb/Q8VIF7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIF7", "url": "https://www.uniprot.org/uniprotkb/Q8VIF7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GKEPLGPALAHELRYPGGDC", "down_seq": "SDIWI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIF7", "url": "https://www.uniprot.org/uniprotkb/Q8VIF7" } ], "site_lbl": "Ser467" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "467", "end_pos": "467" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q99N27-1.188.188", "start_pos": 188, "end_pos": 188, "uniprot_canonical_ac": "Q99N27-1", "length": 522, "uniprot_id": "SNX1_RAT", "protein_name": "Sorting nexin-1", "refseq_ac": "NP_445863", "refseq_name": "sorting nexin-1", "gene_name": "Snx1", "gene_names_uniprotkb": "Snx1; LOC102549158", "gene_names_refseq": "Snx1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" }, { "database": "iPTMnet", "id": "Q99N27", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99N27" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q99N27", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99N27", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TTQTSLPMFRSRQFAVKRRF", "down_seq": "DFLGLYEKLSEKHSQNGFIV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q99N27", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99N27" } ], "site_lbl": "Ser188" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q99N27-1.280.280", "start_pos": 280, "end_pos": 280, "uniprot_canonical_ac": "Q99N27-1", "length": 522, "uniprot_id": "SNX1_RAT", "protein_name": "Sorting nexin-1", "refseq_ac": "NP_445863", "refseq_name": "sorting nexin-1", "gene_name": "Snx1", "gene_names_uniprotkb": "Snx1; LOC102549158", "gene_names_refseq": "Snx1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVREFLEKEELPRAVGTQAL", "down_seq": "GAGLLKMFNKATDAVSKMTI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "site_lbl": "Ser280" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q99N27-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "Q99N27-1", "length": 522, "uniprot_id": "SNX1_RAT", "protein_name": "Sorting nexin-1", "refseq_ac": "NP_445863", "refseq_name": "sorting nexin-1", "gene_name": "Snx1", "gene_names_uniprotkb": "Snx1; LOC102549158", "gene_names_refseq": "Snx1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" }, { "database": "iPTMnet", "id": "Q99N27", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99N27" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q99N27", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99N27", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERLPPPFPGMDPESEGAAGG", "down_seq": "EPEAGDSDTEGEDIFTGAAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q99N27", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99N27" } ], "site_lbl": "Ser32" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q99N27-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q99N27-1.41.41", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q99N27-1.48.48", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q99N27-1.39.39", "start_pos": 39, "end_pos": 39, "uniprot_canonical_ac": "Q99N27-1", "length": 522, "uniprot_id": "SNX1_RAT", "protein_name": "Sorting nexin-1", "refseq_ac": "NP_445863", "refseq_name": "sorting nexin-1", "gene_name": "Snx1", "gene_names_uniprotkb": "Snx1; LOC102549158", "gene_names_refseq": "Snx1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PGMDPESEGAAGGSEPEAGD", "down_seq": "DTEGEDIFTGAAAASKPQSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "site_lbl": "Ser39" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q99N27-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q99N27-1.41.41", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q99N27-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q99N27-1.58.58", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q99N27-1.41.41", "start_pos": 41, "end_pos": 41, "uniprot_canonical_ac": "Q99N27-1", "length": 522, "uniprot_id": "SNX1_RAT", "protein_name": "Sorting nexin-1", "refseq_ac": "NP_445863", "refseq_name": "sorting nexin-1", "gene_name": "Snx1", "gene_names_uniprotkb": "Snx1; LOC102549158", "gene_names_refseq": "Snx1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MDPESEGAAGGSEPEAGDSD", "down_seq": "EGEDIFTGAAAASKPQSPKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "site_lbl": "Thr41" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q99N27-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q99N27-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q99N27-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q99N27-1.58.58", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q99N27-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "Q99N27-1", "length": 522, "uniprot_id": "SNX1_RAT", "protein_name": "Sorting nexin-1", "refseq_ac": "NP_445863", "refseq_name": "sorting nexin-1", "gene_name": "Snx1", "gene_names_uniprotkb": "Snx1; LOC102549158", "gene_names_refseq": "Snx1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AAGGSEPEAGDSDTEGEDIF", "down_seq": "GAAAASKPQSPKKTTSLFPI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "site_lbl": "Thr48" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q99N27-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q99N27-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q99N27-1.41.41", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q99N27-1.58.58", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q99N27-1.58.58", "start_pos": 58, "end_pos": 58, "uniprot_canonical_ac": "Q99N27-1", "length": 522, "uniprot_id": "SNX1_RAT", "protein_name": "Sorting nexin-1", "refseq_ac": "NP_445863", "refseq_name": "sorting nexin-1", "gene_name": "Snx1", "gene_names_uniprotkb": "Snx1; LOC102549158", "gene_names_refseq": "Snx1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSDTEGEDIFTGAAAASKPQ", "down_seq": "PKKTTSLFPIKNGSKENGIH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "site_lbl": "Ser58" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q99N27-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q99N27-1.41.41", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q99N27-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q99N27-1.72.72", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q99N27-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "Q99N27-1", "length": 522, "uniprot_id": "SNX1_RAT", "protein_name": "Sorting nexin-1", "refseq_ac": "NP_445863", "refseq_name": "sorting nexin-1", "gene_name": "Snx1", "gene_names_uniprotkb": "Snx1; LOC102549158", "gene_names_refseq": "Snx1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AASKPQSPKKTTSLFPIKNG", "down_seq": "KENGIHEEQDQEPQDLFADA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q99N27", "url": "https://www.uniprot.org/uniprotkb/Q99N27" } ], "site_lbl": "Ser72" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "188", "end_pos": "188" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q99N27-1.58.58", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P26453-1.160.160", "start_pos": 160, "end_pos": 160, "uniprot_canonical_ac": "P26453-1", "length": 388, "uniprot_id": "BASI_RAT", "protein_name": "Basigin", "refseq_ac": "NP_001103352", "refseq_name": "basigin isoform 1 precursor", "gene_name": "Bsg", "gene_names_uniprotkb": "Bsg", "gene_names_refseq": "5A11; Bsg; CE9; EMMPRIN; HT7; Ox47R; basignin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453#ptm_processing" }, { "database": "UniProtKB", "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GTIVTSVQEVDSKTQLTCFL", "down_seq": "SSGIDIVGHRWMRGGKVLQE", "glycosylation": [ { "glytoucan_ac": "G10820KD", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "ASN-160", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn160", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G19379ID", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn160", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G30159WR", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-160 ; ASN-160", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn160", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G82753OZ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "ASN-160", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn160", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G88725PI", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn160", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn160", "evidence": [ { "id": "P26453", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P26453#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "305", "end_pos": "305" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "357", "end_pos": "357" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 5 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 5 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 5 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 5 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P26453-1.269.269", "start_pos": 269, "end_pos": 269, "uniprot_canonical_ac": "P26453-1", "length": 388, "uniprot_id": "BASI_RAT", "protein_name": "Basigin", "refseq_ac": "NP_001103352", "refseq_name": "basigin isoform 1 precursor", "gene_name": "Bsg", "gene_names_uniprotkb": "Bsg", "gene_names_refseq": "5A11; Bsg; CE9; EMMPRIN; HT7; Ox47R; basignin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PPVDEWVWFKTSDTGDQTIS", "down_seq": "GTEANSKYVIISTPELSELI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn269", "evidence": [ { "id": "P26453", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P26453#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "305", "end_pos": "305" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "357", "end_pos": "357" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P26453-1.305.305", "start_pos": 305, "end_pos": 305, "uniprot_canonical_ac": "P26453-1", "length": 388, "uniprot_id": "BASI_RAT", "protein_name": "Basigin", "refseq_ac": "NP_001103352", "refseq_name": "basigin isoform 1 precursor", "gene_name": "Bsg", "gene_names_uniprotkb": "Bsg", "gene_names_refseq": "5A11; Bsg; CE9; EMMPRIN; HT7; Ox47R; basignin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LSELIISDLDMNVDPGTYVC", "down_seq": "ATNSQGSARETISLRVRSRL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn305", "evidence": [ { "id": "P26453", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P26453#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "305", "end_pos": "305" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "357", "end_pos": "357" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P26453-1.357.357", "start_pos": 357, "end_pos": 357, "uniprot_canonical_ac": "P26453-1", "length": 388, "uniprot_id": "BASI_RAT", "protein_name": "Basigin", "refseq_ac": "NP_001103352", "refseq_name": "basigin isoform 1 precursor", "gene_name": "Bsg", "gene_names_uniprotkb": "Bsg", "gene_names_refseq": "5A11; Bsg; CE9; EMMPRIN; HT7; Ox47R; basignin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453" }, { "database": "iPTMnet", "id": "P26453", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P26453" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P26453", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P26453", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EVLVLVTIIFIYEKRRKPDQ", "down_seq": "LDEDDPGAAPLKGSGSHLND", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P26453", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P26453" } ], "site_lbl": "Thr357" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "305", "end_pos": "305" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "357", "end_pos": "357" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "P26453-1.371.371", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P26453-1.371.371", "start_pos": 371, "end_pos": 371, "uniprot_canonical_ac": "P26453-1", "length": 388, "uniprot_id": "BASI_RAT", "protein_name": "Basigin", "refseq_ac": "NP_001103352", "refseq_name": "basigin isoform 1 precursor", "gene_name": "Bsg", "gene_names_uniprotkb": "Bsg", "gene_names_refseq": "5A11; Bsg; CE9; EMMPRIN; HT7; Ox47R; basignin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453" }, { "database": "iPTMnet", "id": "P26453", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P26453" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P26453", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P26453", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRKPDQTLDEDDPGAAPLKG", "down_seq": "GSHLNDKDKNVRQRNAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P26453", "url": "https://www.uniprot.org/uniprotkb/P26453" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P26453", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P26453" } ], "site_lbl": "Ser371" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "305", "end_pos": "305" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "357", "end_pos": "357" }, { "start_pos": "371", "end_pos": "371" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P26453-1.357.357", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIS1-1.14.14", "start_pos": 14, "end_pos": 14, "uniprot_canonical_ac": "Q9JIS1-1", "length": 1555, "uniprot_id": "RIMS2_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 2", "refseq_ac": "NP_665888", "refseq_name": "regulating synaptic membrane exocytosis protein 2 isoform 2", "gene_name": "Rims2", "gene_names_uniprotkb": "Rims2; Rim2", "gene_names_refseq": "Nim2; Rim2; Rims2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MSAPLGPRGRPAP", "down_seq": "PAASQPPPQPEMPDLSHLTE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr14", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "14", "end_pos": "14" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "1200", "end_pos": "1200" }, { "start_pos": "1276", "end_pos": "1276" }, { "start_pos": "1540", "end_pos": "1540" }, { "start_pos": "1543", "end_pos": "1543" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "713", "end_pos": "713" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9JIS1-1.0.0", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIS1-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9JIS1-1", "length": 1555, "uniprot_id": "RIMS2_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 2", "refseq_ac": "NP_665888", "refseq_name": "regulating synaptic membrane exocytosis protein 2 isoform 2", "gene_name": "Rims2", "gene_names_uniprotkb": "Rims2; Rim2", "gene_names_refseq": "Nim2; Rim2; Rims2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9JIS1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9JIS1" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIS1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9JIS1", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "Q9JIS1", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9JIS1" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "14", "end_pos": "14" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "1200", "end_pos": "1200" }, { "start_pos": "1276", "end_pos": "1276" }, { "start_pos": "1540", "end_pos": "1540" }, { "start_pos": "1543", "end_pos": "1543" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "713", "end_pos": "713" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q9JIS1-1.14.14", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIS1-1.1106.1106", "start_pos": 1106, "end_pos": 1106, "uniprot_canonical_ac": "Q9JIS1-1", "length": 1555, "uniprot_id": "RIMS2_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 2", "refseq_ac": "NP_665888", "refseq_name": "regulating synaptic membrane exocytosis protein 2 isoform 2", "gene_name": "Rims2", "gene_names_uniprotkb": "Rims2; Rim2", "gene_names_refseq": "Nim2; Rim2; Rims2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" }, { "database": "iPTMnet", "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SAPPSPALSRSHPRTGSVQT", "down_seq": "PSSTPVTGRRGRQLPQLPPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1" } ], "site_lbl": "Ser1106" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "14", "end_pos": "14" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "1200", "end_pos": "1200" }, { "start_pos": "1276", "end_pos": "1276" }, { "start_pos": "1540", "end_pos": "1540" }, { "start_pos": "1543", "end_pos": "1543" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "713", "end_pos": "713" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIS1-1.1200.1200", "start_pos": 1200, "end_pos": 1200, "uniprot_canonical_ac": "Q9JIS1-1", "length": 1555, "uniprot_id": "RIMS2_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 2", "refseq_ac": "NP_665888", "refseq_name": "regulating synaptic membrane exocytosis protein 2 isoform 2", "gene_name": "Rims2", "gene_names_uniprotkb": "Rims2; Rim2", "gene_names_refseq": "Nim2; Rim2; Rims2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" }, { "database": "iPTMnet", "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YRSGWDPHRGADTVSTKSSD", "down_seq": "DVSDVSAVSRTSSASRFSST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1" } ], "site_lbl": "Ser1200" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "14", "end_pos": "14" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "1200", "end_pos": "1200" }, { "start_pos": "1276", "end_pos": "1276" }, { "start_pos": "1540", "end_pos": "1540" }, { "start_pos": "1543", "end_pos": "1543" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "713", "end_pos": "713" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIS1-1.1276.1276", "start_pos": 1276, "end_pos": 1276, "uniprot_canonical_ac": "Q9JIS1-1", "length": 1555, "uniprot_id": "RIMS2_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 2", "refseq_ac": "NP_665888", "refseq_name": "regulating synaptic membrane exocytosis protein 2 isoform 2", "gene_name": "Rims2", "gene_names_uniprotkb": "Rims2; Rim2", "gene_names_refseq": "Nim2; Rim2; Rims2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" }, { "database": "iPTMnet", "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKSTSISGDMCSLEKNDGSQ", "down_seq": "DTAVGALGTSGKKRRSSIGA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1" } ], "site_lbl": "Ser1276" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "14", "end_pos": "14" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "1200", "end_pos": "1200" }, { "start_pos": "1276", "end_pos": "1276" }, { "start_pos": "1540", "end_pos": "1540" }, { "start_pos": "1543", "end_pos": "1543" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "713", "end_pos": "713" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIS1-1.1540.1540", "start_pos": 1540, "end_pos": 1540, "uniprot_canonical_ac": "Q9JIS1-1", "length": 1555, "uniprot_id": "RIMS2_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 2", "refseq_ac": "NP_665888", "refseq_name": "regulating synaptic membrane exocytosis protein 2 isoform 2", "gene_name": "Rims2", "gene_names_uniprotkb": "Rims2; Rim2", "gene_names_refseq": "Nim2; Rim2; Rims2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" }, { "database": "iPTMnet", "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLFPPSSLVDPTLAPLTRRA", "down_seq": "QSSLESSTGPSYSRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1" } ], "site_lbl": "Ser1540" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "14", "end_pos": "14" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "1200", "end_pos": "1200" }, { "start_pos": "1276", "end_pos": "1276" }, { "start_pos": "1540", "end_pos": "1540" }, { "start_pos": "1543", "end_pos": "1543" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "713", "end_pos": "713" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9JIS1-1.1543.1543", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIS1-1.1543.1543", "start_pos": 1543, "end_pos": 1543, "uniprot_canonical_ac": "Q9JIS1-1", "length": 1555, "uniprot_id": "RIMS2_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 2", "refseq_ac": "NP_665888", "refseq_name": "regulating synaptic membrane exocytosis protein 2 isoform 2", "gene_name": "Rims2", "gene_names_uniprotkb": "Rims2; Rim2", "gene_names_refseq": "Nim2; Rim2; Rims2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" }, { "database": "iPTMnet", "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPSSLVDPTLAPLTRRASQS", "down_seq": "LESSTGPSYSRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JIS1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JIS1" } ], "site_lbl": "Ser1543" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "14", "end_pos": "14" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "1200", "end_pos": "1200" }, { "start_pos": "1276", "end_pos": "1276" }, { "start_pos": "1540", "end_pos": "1540" }, { "start_pos": "1543", "end_pos": "1543" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "713", "end_pos": "713" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9JIS1-1.1540.1540", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JIS1-1.369.369", "start_pos": 369, "end_pos": 369, "uniprot_canonical_ac": "Q9JIS1-1", "length": 1555, "uniprot_id": "RIMS2_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 2", "refseq_ac": "NP_665888", "refseq_name": "regulating synaptic membrane exocytosis protein 2 isoform 2", "gene_name": "Rims2", "gene_names_uniprotkb": "Rims2; Rim2", "gene_names_refseq": "Nim2; Rim2; Rims2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YEEQMRIHAEVSRARHERRH", "down_seq": "DVSLANAELEDSRISLLRMD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "site_lbl": "Ser369" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "14", "end_pos": "14" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "1200", "end_pos": "1200" }, { "start_pos": "1276", "end_pos": "1276" }, { "start_pos": "1540", "end_pos": "1540" }, { "start_pos": "1543", "end_pos": "1543" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "713", "end_pos": "713" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIS1-1.611.611", "start_pos": 611, "end_pos": 611, "uniprot_canonical_ac": "Q9JIS1-1", "length": 1555, "uniprot_id": "RIMS2_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 2", "refseq_ac": "NP_665888", "refseq_name": "regulating synaptic membrane exocytosis protein 2 isoform 2", "gene_name": "Rims2", "gene_names_uniprotkb": "Rims2; Rim2", "gene_names_refseq": "Nim2; Rim2; Rims2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GSVPRDSGAMLGLKVVGGKM", "down_seq": "ESGRLCAFITKVKKGSLADT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "site_lbl": "Thr611" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "14", "end_pos": "14" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "1200", "end_pos": "1200" }, { "start_pos": "1276", "end_pos": "1276" }, { "start_pos": "1540", "end_pos": "1540" }, { "start_pos": "1543", "end_pos": "1543" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "713", "end_pos": "713" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIS1-1.713.713", "start_pos": 713, "end_pos": 713, "uniprot_canonical_ac": "Q9JIS1-1", "length": 1555, "uniprot_id": "RIMS2_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 2", "refseq_ac": "NP_665888", "refseq_name": "regulating synaptic membrane exocytosis protein 2 isoform 2", "gene_name": "Rims2", "gene_names_uniprotkb": "Rims2; Rim2", "gene_names_refseq": "Nim2; Rim2; Rims2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESSSSSFESQKMDRPSISVT", "down_seq": "PMSPGMLRDVPQFLSGQLSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "site_lbl": "Ser713" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "14", "end_pos": "14" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "1200", "end_pos": "1200" }, { "start_pos": "1276", "end_pos": "1276" }, { "start_pos": "1540", "end_pos": "1540" }, { "start_pos": "1543", "end_pos": "1543" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "713", "end_pos": "713" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9JIS1-1.716.716", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JIS1-1.716.716", "start_pos": 716, "end_pos": 716, "uniprot_canonical_ac": "Q9JIS1-1", "length": 1555, "uniprot_id": "RIMS2_RAT", "protein_name": "Regulating synaptic membrane exocytosis protein 2", "refseq_ac": "NP_665888", "refseq_name": "regulating synaptic membrane exocytosis protein 2 isoform 2", "gene_name": "Rims2", "gene_names_uniprotkb": "Rims2; Rim2", "gene_names_refseq": "Nim2; Rim2; Rims2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSFESQKMDRPSISVTSPM", "down_seq": "PGMLRDVPQFLSGQLSSQSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JIS1", "url": "https://www.uniprot.org/uniprotkb/Q9JIS1" } ], "site_lbl": "Ser716" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "14", "end_pos": "14" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "1200", "end_pos": "1200" }, { "start_pos": "1276", "end_pos": "1276" }, { "start_pos": "1540", "end_pos": "1540" }, { "start_pos": "1543", "end_pos": "1543" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "713", "end_pos": "713" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9JIS1-1.713.713", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q64568-1.1079.1079", "start_pos": 1079, "end_pos": 1079, "uniprot_canonical_ac": "Q64568-1", "length": 1258, "uniprot_id": "AT2B3_RAT", "protein_name": "Plasma membrane calcium-transporting ATPase 3", "refseq_ac": "NP_579822", "refseq_name": "plasma membrane calcium-transporting ATPase 3 isoform 3", "gene_name": "Atp2b3", "gene_names_uniprotkb": "Atp2b3; Pmca3", "gene_names_refseq": "Atp2b3; Pmca3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568" }, { "database": "iPTMnet", "id": "Q64568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64568" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q64568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64568", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PTSQLKCLKEAGHGPGKDEM", "down_seq": "DEELAEGEEEIDHAERELRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q64568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64568" } ], "site_lbl": "Thr1079" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1113", "end_pos": "1113" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64568-1.1113.1113", "start_pos": 1113, "end_pos": 1113, "uniprot_canonical_ac": "Q64568-1", "length": 1258, "uniprot_id": "AT2B3_RAT", "protein_name": "Plasma membrane calcium-transporting ATPase 3", "refseq_ac": "NP_579822", "refseq_name": "plasma membrane calcium-transporting ATPase 3 isoform 3", "gene_name": "Atp2b3", "gene_names_uniprotkb": "Atp2b3; Pmca3", "gene_names_refseq": "Atp2b3; Pmca3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AERELRRGQILWFRGLNRIQ", "down_seq": "QMEVVSTFKRSGSFQGAVRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568" } ], "site_lbl": "Thr1113" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1113", "end_pos": "1113" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q64568-1.1126.1126", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q64568-1.1126.1126", "start_pos": 1126, "end_pos": 1126, "uniprot_canonical_ac": "Q64568-1", "length": 1258, "uniprot_id": "AT2B3_RAT", "protein_name": "Plasma membrane calcium-transporting ATPase 3", "refseq_ac": "NP_579822", "refseq_name": "plasma membrane calcium-transporting ATPase 3 isoform 3", "gene_name": "Atp2b3", "gene_names_uniprotkb": "Atp2b3; Pmca3", "gene_names_refseq": "Atp2b3; Pmca3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568" }, { "database": "iPTMnet", "id": "Q64568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64568" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q64568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64568", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGLNRIQTQMEVVSTFKRSG", "down_seq": "FQGAVRRRSSVLSQLHDVTN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q64568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64568" } ], "site_lbl": "Ser1126" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1113", "end_pos": "1113" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q64568-1.1113.1113", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64568-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "Q64568-1", "length": 1258, "uniprot_id": "AT2B3_RAT", "protein_name": "Plasma membrane calcium-transporting ATPase 3", "refseq_ac": "NP_579822", "refseq_name": "plasma membrane calcium-transporting ATPase 3 isoform 3", "gene_name": "Atp2b3", "gene_names_uniprotkb": "Atp2b3; Pmca3", "gene_names_refseq": "Atp2b3; Pmca3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568" }, { "database": "iPTMnet", "id": "Q64568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64568" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q64568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64568", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MGDMANS", "down_seq": "IEFHPKPQQQREVPHVGGFG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q64568", "url": "https://www.uniprot.org/uniprotkb/Q64568" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q64568", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64568" } ], "site_lbl": "Ser8" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1113", "end_pos": "1113" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47858-1.530.530", "start_pos": 530, "end_pos": 530, "uniprot_canonical_ac": "P47858-1", "length": 780, "uniprot_id": "PFKAM_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, muscle type", "refseq_ac": "NP_113903", "refseq_name": "ATP-dependent 6-phosphofructokinase, muscle type", "gene_name": "Pfkm", "gene_names_uniprotkb": "Pfkm; Pfk-m", "gene_names_refseq": "ATP-PFK; PFK-A; Pfk-M; Pfkm", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EGRKQFDELCIPFVVIPATV", "down_seq": "NNVPGSDFSIGADTALNTIC", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GlcNAc) serine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser530", "evidence": [ { "id": "P47858", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P47858#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "530", "end_pos": "530" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "775", "end_pos": "775" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P47858-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P47858-1", "length": 780, "uniprot_id": "PFKAM_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, muscle type", "refseq_ac": "NP_113903", "refseq_name": "ATP-dependent 6-phosphofructokinase, muscle type", "gene_name": "Pfkm", "gene_names_uniprotkb": "Pfkm; Pfk-m", "gene_names_refseq": "ATP-PFK; PFK-A; Pfk-M; Pfkm", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "An O-GlcNAcylomic Approach Reveals ACLY as a Potential Target in Sepsis in the Young Rat.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B", "evidence": [ { "database": "O-GlcNAc Database", "id": "P47858", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47858" } ], "reference": [ { "type": "PubMed", "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P47858", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47858" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P47858", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47858" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47858", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47858", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "34502162", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34502162" }, { "id": "P47858", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47858" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "530", "end_pos": "530" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "775", "end_pos": "775" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47858-1.133.133", "start_pos": 133, "end_pos": 133, "uniprot_canonical_ac": "P47858-1", "length": 780, "uniprot_id": "PFKAM_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, muscle type", "refseq_ac": "NP_113903", "refseq_name": "ATP-dependent 6-phosphofructokinase, muscle type", "gene_name": "Pfkm", "gene_names_uniprotkb": "Pfkm; Pfk-m", "gene_names_refseq": "ATP-PFK; PFK-A; Pfk-M; Pfkm", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858" }, { "database": "iPTMnet", "id": "P47858", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47858" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47858", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47858", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LCVIGGDGSLTGADTFRSEW", "down_seq": "DLLNDLQKDGKITAEERTKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P47858", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47858" } ], "site_lbl": "Ser133" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "530", "end_pos": "530" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "775", "end_pos": "775" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47858-1.377.377", "start_pos": 377, "end_pos": 377, "uniprot_canonical_ac": "P47858-1", "length": 780, "uniprot_id": "PFKAM_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, muscle type", "refseq_ac": "NP_113903", "refseq_name": "ATP-dependent 6-phosphofructokinase, muscle type", "gene_name": "Pfkm", "gene_names_uniprotkb": "Pfkm; Pfk-m", "gene_names_refseq": "ATP-PFK; PFK-A; Pfk-M; Pfkm", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858" }, { "database": "iPTMnet", "id": "P47858", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47858" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47858", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47858", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVTKAMDEKRFDEAIKLRGR", "down_seq": "FMNNWEVYKLLAHVRPPVSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P47858", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47858" } ], "site_lbl": "Ser377" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "530", "end_pos": "530" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "775", "end_pos": "775" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47858-1.775.775", "start_pos": 775, "end_pos": 775, "uniprot_canonical_ac": "P47858-1", "length": 780, "uniprot_id": "PFKAM_RAT", "protein_name": "ATP-dependent 6-phosphofructokinase, muscle type", "refseq_ac": "NP_113903", "refseq_name": "ATP-dependent 6-phosphofructokinase, muscle type", "gene_name": "Pfkm", "gene_names_uniprotkb": "Pfkm; Pfk-m", "gene_names_refseq": "ATP-PFK; PFK-A; Pfk-M; Pfkm", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858" }, { "database": "iPTMnet", "id": "P47858", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47858" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47858", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47858", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YEIDLDTSDHAHLEHISRKR", "down_seq": "GEAAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P47858", "url": "https://www.uniprot.org/uniprotkb/P47858" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P47858", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P47858" } ], "site_lbl": "Ser775" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "530", "end_pos": "530" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "775", "end_pos": "775" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AYJ3-1.269.269", "start_pos": 269, "end_pos": 269, "uniprot_canonical_ac": "Q6AYJ3-1", "length": 398, "uniprot_id": "SPA6L_RAT", "protein_name": "Spermatogenesis associated 6-like protein", "refseq_ac": "NP_001014187", "refseq_name": "spermatogenesis associated 6-like protein", "gene_name": "Spata6l", "gene_names_uniprotkb": "Spata6l", "gene_names_refseq": "RGD1310039; Spata6l", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYJ3", "url": "https://www.uniprot.org/uniprotkb/Q6AYJ3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AYJ3", "url": "https://www.uniprot.org/uniprotkb/Q6AYJ3" }, { "database": "iPTMnet", "id": "Q6AYJ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYJ3" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AYJ3", "url": "https://www.uniprot.org/uniprotkb/Q6AYJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AYJ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYJ3", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QKSRRKPKFINFDLAKKRAF", "down_seq": "LDSLEANIKVVREPDERIVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYJ3", "url": "https://www.uniprot.org/uniprotkb/Q6AYJ3" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AYJ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYJ3" } ], "site_lbl": "Ser269" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "269", "end_pos": "269" }, { "start_pos": "272", "end_pos": "272" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q6AYJ3-1.272.272", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AYJ3-1.272.272", "start_pos": 272, "end_pos": 272, "uniprot_canonical_ac": "Q6AYJ3-1", "length": 398, "uniprot_id": "SPA6L_RAT", "protein_name": "Spermatogenesis associated 6-like protein", "refseq_ac": "NP_001014187", "refseq_name": "spermatogenesis associated 6-like protein", "gene_name": "Spata6l", "gene_names_uniprotkb": "Spata6l", "gene_names_refseq": "RGD1310039; Spata6l", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYJ3", "url": "https://www.uniprot.org/uniprotkb/Q6AYJ3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AYJ3", "url": "https://www.uniprot.org/uniprotkb/Q6AYJ3" }, { "database": "iPTMnet", "id": "Q6AYJ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYJ3" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AYJ3", "url": "https://www.uniprot.org/uniprotkb/Q6AYJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AYJ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYJ3", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRKPKFINFDLAKKRAFSLD", "down_seq": "LEANIKVVREPDERIVLRSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYJ3", "url": "https://www.uniprot.org/uniprotkb/Q6AYJ3" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AYJ3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYJ3" } ], "site_lbl": "Ser272" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "269", "end_pos": "269" }, { "start_pos": "272", "end_pos": "272" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q6AYJ3-1.269.269", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z2P4-1.102.102", "start_pos": 102, "end_pos": 102, "uniprot_canonical_ac": "Q9Z2P4-1", "length": 137, "uniprot_id": "RGCC_RAT", "protein_name": "Regulator of cell cycle RGCC", "refseq_ac": "NP_446460", "refseq_name": "regulator of cell cycle RGCC", "gene_name": "Rgccl1; Rgcc", "gene_names_uniprotkb": "Rgccl1; Rgcc; LOC683573; Rgc32; Rgccl1", "gene_names_refseq": "Rgc32; Rgcc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SLYRDSFTFSDEKLNSPTDS", "down_seq": "PALLSSAVTPRKAKLGDTKE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr102", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" } ] }, { "type": "snv", "site_list": [ { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9Z2P4-1.91.91", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9Z2P4-1.97.97", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9Z2P4-1.98.98", "categories": [ "snv_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9Z2P4-1.111.111", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z2P4-1.111.111", "start_pos": 111, "end_pos": 111, "uniprot_canonical_ac": "Q9Z2P4-1", "length": 137, "uniprot_id": "RGCC_RAT", "protein_name": "Regulator of cell cycle RGCC", "refseq_ac": "NP_446460", "refseq_name": "regulator of cell cycle RGCC", "gene_name": "Rgccl1; Rgcc", "gene_names_uniprotkb": "Rgccl1; Rgcc; LOC683573; Rgc32; Rgccl1", "gene_names_refseq": "Rgc32; Rgcc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SDEKLNSPTDSTPALLSSAV", "down_seq": "PRKAKLGDTKELEDFIADLD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr111", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by CDK1", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "site_lbl": "Thr111" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" } ] }, { "type": "snv", "site_list": [ { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9Z2P4-1.91.91", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9Z2P4-1.97.97", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9Z2P4-1.98.98", "categories": [ "snv_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9Z2P4-1.102.102", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z2P4-1.98.98", "start_pos": 98, "end_pos": 98, "uniprot_canonical_ac": "Q9Z2P4-1", "length": 137, "uniprot_id": "RGCC_RAT", "protein_name": "Regulator of cell cycle RGCC", "refseq_ac": "NP_446460", "refseq_name": "regulator of cell cycle RGCC", "gene_name": "Rgccl1; Rgcc", "gene_names_uniprotkb": "Rgccl1; Rgcc; LOC683573; Rgc32; Rgccl1", "gene_names_refseq": "Rgc32; Rgcc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "rs8147687", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs8147687", "database": "dbSNP", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "ESADSLYRDSFTFSDEKLNS", "down_seq": "TDSTPALLSSAVTPRKAKLG", "snv": [ { "evidence": [ { "id": "rs8147687", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs8147687" } ], "glycoeffect": [ "n-glyco-sequon-gain" ], "sequence_org": "P", "sequence_mut": "T", "comment": "Germline mutation passed 1 filters: n-glyco-sequon-gain (NSP->NST).", "chr_id": "5", "chr_pos": "89296519", "ref_nt": "T", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "P98", "keywords": [ "ebi", "germline" ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" } ] }, { "type": "snv", "site_list": [ { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "snv_flag" ], "glycosylation": [], "mutagenesis": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9Z2P4-1.91.91", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9Z2P4-1.97.97", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9Z2P4-1.102.102", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9Z2P4-1.111.111", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": true, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "sequence_org", "sequence_mut", "comment", "chr_id", "chr_pos", "ref_nt", "alt_nt", "minor_allelic_frequency", "site_lbl" ] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "sequence_org", "sequence_mut", "comment", "chr_id", "chr_pos", "ref_nt", "alt_nt", "minor_allelic_frequency", "site_lbl" ] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z2P4-1.67.67", "start_pos": 67, "end_pos": 67, "uniprot_canonical_ac": "Q9Z2P4-1", "length": 137, "uniprot_id": "RGCC_RAT", "protein_name": "Regulator of cell cycle RGCC", "refseq_ac": "NP_446460", "refseq_name": "regulator of cell cycle RGCC", "gene_name": "Rgccl1; Rgcc", "gene_names_uniprotkb": "Rgccl1; Rgcc; LOC683573; Rgc32; Rgccl1", "gene_names_refseq": "Rgc32; Rgcc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HERHFHYEEHLERMKRRSSA", "down_seq": "VSDSSGFSDSESADSLYRDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "site_lbl": "Ser67" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" } ] }, { "type": "snv", "site_list": [ { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9Z2P4-1.69.69", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9Z2P4-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9Z2P4-1.75.75", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z2P4-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "Q9Z2P4-1", "length": 137, "uniprot_id": "RGCC_RAT", "protein_name": "Regulator of cell cycle RGCC", "refseq_ac": "NP_446460", "refseq_name": "regulator of cell cycle RGCC", "gene_name": "Rgccl1; Rgcc", "gene_names_uniprotkb": "Rgccl1; Rgcc; LOC683573; Rgc32; Rgccl1", "gene_names_refseq": "Rgc32; Rgcc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RHFHYEEHLERMKRRSSASV", "down_seq": "DSSGFSDSESADSLYRDSFT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "site_lbl": "Ser69" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" } ] }, { "type": "snv", "site_list": [ { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9Z2P4-1.67.67", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9Z2P4-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9Z2P4-1.75.75", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z2P4-1.71.71", "start_pos": 71, "end_pos": 71, "uniprot_canonical_ac": "Q9Z2P4-1", "length": 137, "uniprot_id": "RGCC_RAT", "protein_name": "Regulator of cell cycle RGCC", "refseq_ac": "NP_446460", "refseq_name": "regulator of cell cycle RGCC", "gene_name": "Rgccl1; Rgcc", "gene_names_uniprotkb": "Rgccl1; Rgcc; LOC683573; Rgc32; Rgccl1", "gene_names_refseq": "Rgc32; Rgcc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FHYEEHLERMKRRSSASVSD", "down_seq": "SGFSDSESADSLYRDSFTFS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "site_lbl": "Ser71" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" } ] }, { "type": "snv", "site_list": [ { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9Z2P4-1.67.67", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9Z2P4-1.69.69", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9Z2P4-1.75.75", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9Z2P4-1.91.91", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z2P4-1.75.75", "start_pos": 75, "end_pos": 75, "uniprot_canonical_ac": "Q9Z2P4-1", "length": 137, "uniprot_id": "RGCC_RAT", "protein_name": "Regulator of cell cycle RGCC", "refseq_ac": "NP_446460", "refseq_name": "regulator of cell cycle RGCC", "gene_name": "Rgccl1; Rgcc", "gene_names_uniprotkb": "Rgccl1; Rgcc; LOC683573; Rgc32; Rgccl1", "gene_names_refseq": "Rgc32; Rgcc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EHLERMKRRSSASVSDSSGF", "down_seq": "DSESADSLYRDSFTFSDEKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "site_lbl": "Ser75" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" } ] }, { "type": "snv", "site_list": [ { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q9Z2P4-1.67.67", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9Z2P4-1.69.69", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9Z2P4-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9Z2P4-1.91.91", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z2P4-1.91.91", "start_pos": 91, "end_pos": 91, "uniprot_canonical_ac": "Q9Z2P4-1", "length": 137, "uniprot_id": "RGCC_RAT", "protein_name": "Regulator of cell cycle RGCC", "refseq_ac": "NP_446460", "refseq_name": "regulator of cell cycle RGCC", "gene_name": "Rgccl1; Rgcc", "gene_names_uniprotkb": "Rgccl1; Rgcc; LOC683573; Rgc32; Rgccl1", "gene_names_refseq": "Rgc32; Rgcc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" }, { "database": "iPTMnet", "id": "Q9Z2P4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2P4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z2P4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2P4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSGFSDSESADSLYRDSFTF", "down_seq": "DEKLNSPTDSTPALLSSAVT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z2P4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2P4" } ], "site_lbl": "Ser91" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" } ] }, { "type": "snv", "site_list": [ { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9Z2P4-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9Z2P4-1.75.75", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9Z2P4-1.97.97", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9Z2P4-1.98.98", "categories": [ "snv_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9Z2P4-1.102.102", "categories": [ "glycosylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9Z2P4-1.111.111", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z2P4-1.97.97", "start_pos": 97, "end_pos": 97, "uniprot_canonical_ac": "Q9Z2P4-1", "length": 137, "uniprot_id": "RGCC_RAT", "protein_name": "Regulator of cell cycle RGCC", "refseq_ac": "NP_446460", "refseq_name": "regulator of cell cycle RGCC", "gene_name": "Rgccl1; Rgcc", "gene_names_uniprotkb": "Rgccl1; Rgcc; LOC683573; Rgc32; Rgccl1", "gene_names_refseq": "Rgc32; Rgcc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" }, { "database": "iPTMnet", "id": "Q9Z2P4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2P4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z2P4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2P4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SESADSLYRDSFTFSDEKLN", "down_seq": "PTDSTPALLSSAVTPRKAKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2P4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2P4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z2P4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2P4" } ], "site_lbl": "Ser97" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "111", "end_pos": "111" } ] }, { "type": "snv", "site_list": [ { "start_pos": "98", "end_pos": "98" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "97", "end_pos": "97" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9Z2P4-1.91.91", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9Z2P4-1.98.98", "categories": [ "snv_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9Z2P4-1.102.102", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9Z2P4-1.111.111", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63737-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "Q63737-1", "length": 301, "uniprot_id": "PHLP_RAT", "protein_name": "Phosducin-like protein", "refseq_ac": "NP_071583", "refseq_name": "phosducin-like protein", "gene_name": "Pdcl", "gene_names_uniprotkb": "Pdcl; AABR07051787.1", "gene_names_refseq": "Pdcl1; Pdcl; Phlp", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DEDSDHEDKDRGRGAPASSS", "down_seq": "PAEAELAGEGISVNTGPKGV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr42", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "296", "end_pos": "296" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q63737-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63737-1.20.20", "start_pos": 20, "end_pos": 20, "uniprot_canonical_ac": "Q63737-1", "length": 301, "uniprot_id": "PHLP_RAT", "protein_name": "Phosducin-like protein", "refseq_ac": "NP_071583", "refseq_name": "phosducin-like protein", "gene_name": "Pdcl", "gene_names_uniprotkb": "Pdcl; AABR07051787.1", "gene_names_refseq": "Pdcl1; Pdcl; Phlp", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" }, { "database": "iPTMnet", "id": "Q63737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63737" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63737", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "", "down_seq": "EDEDSDHEDKDRGRGAPASS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63737" } ], "site_lbl": "Ser20" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "296", "end_pos": "296" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q63737-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63737-1.226.226", "start_pos": 226, "end_pos": 226, "uniprot_canonical_ac": "Q63737-1", "length": 301, "uniprot_id": "PHLP_RAT", "protein_name": "Phosducin-like protein", "refseq_ac": "NP_071583", "refseq_name": "phosducin-like protein", "gene_name": "Pdcl", "gene_names_uniprotkb": "Pdcl; AABR07051787.1", "gene_names_refseq": "Pdcl1; Pdcl; Phlp", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAEYPTVKFCRVRSSVIGAS", "down_seq": "RFTRNALPALLIYKAGELIG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" } ], "site_lbl": "Ser226" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "296", "end_pos": "296" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63737-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "Q63737-1", "length": 301, "uniprot_id": "PHLP_RAT", "protein_name": "Phosducin-like protein", "refseq_ac": "NP_071583", "refseq_name": "phosducin-like protein", "gene_name": "Pdcl", "gene_names_uniprotkb": "Pdcl; AABR07051787.1", "gene_names_refseq": "Pdcl1; Pdcl; Phlp", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" }, { "database": "iPTMnet", "id": "Q63737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63737" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63737", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DDKLLGEKLQYYYSTSEDED", "down_seq": "DHEDKDRGRGAPASSSTPAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63737" } ], "site_lbl": "Ser25" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "296", "end_pos": "296" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q63737-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q63737-1.42.42", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63737-1.293.293", "start_pos": 293, "end_pos": 293, "uniprot_canonical_ac": "Q63737-1", "length": 301, "uniprot_id": "PHLP_RAT", "protein_name": "Phosducin-like protein", "refseq_ac": "NP_071583", "refseq_name": "phosducin-like protein", "gene_name": "Pdcl", "gene_names_uniprotkb": "Pdcl; AABR07051787.1", "gene_names_refseq": "Pdcl1; Pdcl; Phlp", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" }, { "database": "iPTMnet", "id": "Q63737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63737" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63737", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLPEKEVLVLTSVRNSATCH", "down_seq": "EDSDLEID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63737" } ], "site_lbl": "Ser293" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "296", "end_pos": "296" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q63737-1.296.296", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63737-1.296.296", "start_pos": 296, "end_pos": 296, "uniprot_canonical_ac": "Q63737-1", "length": 301, "uniprot_id": "PHLP_RAT", "protein_name": "Phosducin-like protein", "refseq_ac": "NP_071583", "refseq_name": "phosducin-like protein", "gene_name": "Pdcl", "gene_names_uniprotkb": "Pdcl; AABR07051787.1", "gene_names_refseq": "Pdcl1; Pdcl; Phlp", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" }, { "database": "iPTMnet", "id": "Q63737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63737" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63737", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKEVLVLTSVRNSATCHSED", "down_seq": "DLEID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63737", "url": "https://www.uniprot.org/uniprotkb/Q63737" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63737", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63737" } ], "site_lbl": "Ser296" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "296", "end_pos": "296" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q63737-1.293.293", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P59622-1.274.274", "start_pos": 274, "end_pos": 274, "uniprot_canonical_ac": "P59622-1", "length": 312, "uniprot_id": "SLAP1_RAT", "protein_name": "Src-like-adapter", "refseq_ac": "NP_835198", "refseq_name": "src-like-adapter", "gene_name": "Sla", "gene_names_uniprotkb": "Sla; Slap1; Slap", "gene_names_refseq": "Slap1; Sla", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P59622", "url": "https://www.uniprot.org/uniprotkb/P59622" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P59622", "url": "https://www.uniprot.org/uniprotkb/P59622" }, { "database": "iPTMnet", "id": "P59622", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59622" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P59622", "url": "https://www.uniprot.org/uniprotkb/P59622", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P59622", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59622", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IASYLSLTGDDSSNFDRKKK", "down_seq": "LSLIYSGSKRKSSFFSAPNT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P59622", "url": "https://www.uniprot.org/uniprotkb/P59622" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P59622", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P59622" } ], "site_lbl": "Ser274" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "274", "end_pos": "274" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P55016-1.442.442", "start_pos": 442, "end_pos": 442, "uniprot_canonical_ac": "P55016-1", "length": 1095, "uniprot_id": "S12A1_RAT", "protein_name": "Solute carrier family 12 member 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc12a1", "gene_names_uniprotkb": "Slc12a1; Nkcc2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YIGVAICVRACVVRDATGSM", "down_seq": "DTVVSGMNCNGSAACGLGYD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn442", "evidence": [ { "id": "P55016", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P55016#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "442", "end_pos": "442" }, { "start_pos": "452", "end_pos": "452" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "P55016-1.452.452", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P55016-1.452.452", "start_pos": 452, "end_pos": 452, "uniprot_canonical_ac": "P55016-1", "length": 1095, "uniprot_id": "S12A1_RAT", "protein_name": "Solute carrier family 12 member 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc12a1", "gene_names_uniprotkb": "Slc12a1; Nkcc2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "CVVRDATGSMNDTVVSGMNC", "down_seq": "GSAACGLGYDFSRCQHEPCQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn452", "evidence": [ { "id": "P55016", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P55016#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "442", "end_pos": "442" }, { "start_pos": "452", "end_pos": "452" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P55016-1.442.442", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P55016-1.101.101", "start_pos": 101, "end_pos": 101, "uniprot_canonical_ac": "P55016-1", "length": 1095, "uniprot_id": "S12A1_RAT", "protein_name": "Solute carrier family 12 member 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc12a1", "gene_names_uniprotkb": "Slc12a1; Nkcc2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Calcineurin and Sorting-Related Receptor with A-Type Repeats Interact to Regulate the Renal Na(+)-K(+)-2Cl(-) Cotransporter.", "journal": "Journal of the American Society of Nephrology : JASN", "date": "2016", "authors": "Borschewski A, Himmerkus N, Boldt C, Blankenstein KI, McCormick JA, Lazelle R, Willnow TE, Jankowski V, Plain A, Bleich M, Ellison DH, Bachmann S, Mutig K", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "reference": [ { "type": "PubMed", "id": "25967121", "url": "https://glygen.org/publication/PubMed/25967121" } ] } ], "crossref": [ { "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25967121", "url": "https://glygen.org/publication/PubMed/25967121", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TFHAYDSHTNTYYLQTFGHN", "down_seq": "MDAVPKIEYYRNTGSVSGPK", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of interaction with PPP3CB.", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "PubMed", "id": "25967121", "url": "https://glygen.org/publication/PubMed/25967121" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "No effect on interaction with PPP3CB.", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "PubMed", "id": "25967121", "url": "https://glygen.org/publication/PubMed/25967121" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "site_lbl": "Thr101" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "442", "end_pos": "442" }, { "start_pos": "452", "end_pos": "452" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P55016-1.87.87", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P55016-1.91.91", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P55016-1.96.96", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P55016-1.114.114", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P55016-1.116.116", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P55016-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "P55016-1", "length": 1095, "uniprot_id": "S12A1_RAT", "protein_name": "Solute carrier family 12 member 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc12a1", "gene_names_uniprotkb": "Slc12a1; Nkcc2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Calcineurin and Sorting-Related Receptor with A-Type Repeats Interact to Regulate the Renal Na(+)-K(+)-2Cl(-) Cotransporter.", "journal": "Journal of the American Society of Nephrology : JASN", "date": "2016", "authors": "Borschewski A, Himmerkus N, Boldt C, Blankenstein KI, McCormick JA, Lazelle R, Willnow TE, Jankowski V, Plain A, Bleich M, Ellison DH, Bachmann S, Mutig K", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "reference": [ { "type": "PubMed", "id": "25967121", "url": "https://glygen.org/publication/PubMed/25967121" } ] }, { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "iPTMnet", "id": "P55016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55016" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25967121", "url": "https://glygen.org/publication/PubMed/25967121", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P55016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55016", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LQTFGHNTMDAVPKIEYYRN", "down_seq": "GSVSGPKVNRPSLQEIHEQL", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of interaction with PPP3CB.", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "PubMed", "id": "25967121", "url": "https://glygen.org/publication/PubMed/25967121" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "No effect on interaction with PPP3CB.", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "PubMed", "id": "25967121", "url": "https://glygen.org/publication/PubMed/25967121" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P55016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55016" } ], "site_lbl": "Thr114" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "442", "end_pos": "442" }, { "start_pos": "452", "end_pos": "452" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P55016-1.96.96", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P55016-1.101.101", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P55016-1.116.116", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P55016-1.126.126", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P55016-1.96.96", "start_pos": 96, "end_pos": 96, "uniprot_canonical_ac": "P55016-1", "length": 1095, "uniprot_id": "S12A1_RAT", "protein_name": "Solute carrier family 12 member 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc12a1", "gene_names_uniprotkb": "Slc12a1; Nkcc2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Calcineurin and Sorting-Related Receptor with A-Type Repeats Interact to Regulate the Renal Na(+)-K(+)-2Cl(-) Cotransporter.", "journal": "Journal of the American Society of Nephrology : JASN", "date": "2016", "authors": "Borschewski A, Himmerkus N, Boldt C, Blankenstein KI, McCormick JA, Lazelle R, Willnow TE, Jankowski V, Plain A, Bleich M, Ellison DH, Bachmann S, Mutig K", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "reference": [ { "type": "PubMed", "id": "25967121", "url": "https://glygen.org/publication/PubMed/25967121" } ] } ], "crossref": [ { "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25967121", "url": "https://glygen.org/publication/PubMed/25967121", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AKTDTTFHAYDSHTNTYYLQ", "down_seq": "FGHNTMDAVPKIEYYRNTGS", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of interaction with PPP3CB.", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "PubMed", "id": "25967121", "url": "https://glygen.org/publication/PubMed/25967121" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "No effect on interaction with PPP3CB.", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "PubMed", "id": "25967121", "url": "https://glygen.org/publication/PubMed/25967121" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "site_lbl": "Thr96" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "442", "end_pos": "442" }, { "start_pos": "452", "end_pos": "452" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P55016-1.87.87", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P55016-1.91.91", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P55016-1.101.101", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P55016-1.114.114", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P55016-1.116.116", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P55016-1.116.116", "start_pos": 116, "end_pos": 116, "uniprot_canonical_ac": "P55016-1", "length": 1095, "uniprot_id": "S12A1_RAT", "protein_name": "Solute carrier family 12 member 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc12a1", "gene_names_uniprotkb": "Slc12a1; Nkcc2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "iPTMnet", "id": "P55016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55016" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P55016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55016", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TFGHNTMDAVPKIEYYRNTG", "down_seq": "VSGPKVNRPSLQEIHEQLAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P55016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55016" } ], "site_lbl": "Ser116" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "442", "end_pos": "442" }, { "start_pos": "452", "end_pos": "452" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P55016-1.96.96", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P55016-1.101.101", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P55016-1.114.114", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P55016-1.126.126", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P55016-1.126.126", "start_pos": 126, "end_pos": 126, "uniprot_canonical_ac": "P55016-1", "length": 1095, "uniprot_id": "S12A1_RAT", "protein_name": "Solute carrier family 12 member 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc12a1", "gene_names_uniprotkb": "Slc12a1; Nkcc2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Regulation of the renal-specific Na+-K+-2Cl- co-transporter NKCC2 by AMP-activated protein kinase (AMPK).", "journal": "The Biochemical journal", "date": "2007", "authors": "Fraser SA, Gimenez I, Cook N, Jennings I, Katerelos M, Katsis F, Levidiotis V, Kemp BE, Power DA", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "iPTMnet", "id": "P55016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55016" } ], "reference": [ { "type": "PubMed", "id": "17341212", "url": "https://glygen.org/publication/PubMed/17341212" } ] } ], "crossref": [ { "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P55016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55016", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17341212", "url": "https://glygen.org/publication/PubMed/17341212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PKIEYYRNTGSVSGPKVNRP", "down_seq": "LQEIHEQLAKNVAVAPGSAD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by AMPK", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "iPTMnet", "id": "P55016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55016" }, { "database": "PubMed", "id": "17341212", "url": "https://glygen.org/publication/PubMed/17341212" } ], "site_lbl": "Ser126" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "442", "end_pos": "442" }, { "start_pos": "452", "end_pos": "452" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P55016-1.114.114", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P55016-1.116.116", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P55016-1.144.144", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P55016-1.144.144", "start_pos": 144, "end_pos": 144, "uniprot_canonical_ac": "P55016-1", "length": 1095, "uniprot_id": "S12A1_RAT", "protein_name": "Solute carrier family 12 member 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc12a1", "gene_names_uniprotkb": "Slc12a1; Nkcc2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "iPTMnet", "id": "P55016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55016" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P55016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55016", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RPSLQEIHEQLAKNVAVAPG", "down_seq": "ADRVANGDGMPGDEQAENKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P55016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55016" } ], "site_lbl": "Ser144" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "442", "end_pos": "442" }, { "start_pos": "452", "end_pos": "452" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P55016-1.126.126", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P55016-1.57.57", "start_pos": 57, "end_pos": 57, "uniprot_canonical_ac": "P55016-1", "length": 1095, "uniprot_id": "S12A1_RAT", "protein_name": "Solute carrier family 12 member 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc12a1", "gene_names_uniprotkb": "Slc12a1; Nkcc2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DPPHYEETSFGDEAQNRLKI", "down_seq": "FRPGNQECYENFLQTGETAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "site_lbl": "Ser57" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "442", "end_pos": "442" }, { "start_pos": "452", "end_pos": "452" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P55016-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "P55016-1", "length": 1095, "uniprot_id": "S12A1_RAT", "protein_name": "Solute carrier family 12 member 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc12a1", "gene_names_uniprotkb": "Slc12a1; Nkcc2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ENFLQTGETAKTDTTFHAYD", "down_seq": "HTNTYYLQTFGHNTMDAVPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "site_lbl": "Ser87" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "442", "end_pos": "442" }, { "start_pos": "452", "end_pos": "452" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P55016-1.91.91", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P55016-1.96.96", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P55016-1.101.101", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P55016-1.91.91", "start_pos": 91, "end_pos": 91, "uniprot_canonical_ac": "P55016-1", "length": 1095, "uniprot_id": "S12A1_RAT", "protein_name": "Solute carrier family 12 member 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc12a1", "gene_names_uniprotkb": "Slc12a1; Nkcc2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QTGETAKTDTTFHAYDSHTN", "down_seq": "YYLQTFGHNTMDAVPKIEYY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P55016", "url": "https://www.uniprot.org/uniprotkb/P55016" } ], "site_lbl": "Thr91" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "442", "end_pos": "442" }, { "start_pos": "452", "end_pos": "452" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P55016-1.87.87", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P55016-1.96.96", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P55016-1.101.101", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q811V6-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "Q811V6-1", "length": 281, "uniprot_id": "SPAS1_RAT", "protein_name": "Spermatogenesis-associated serine-rich protein 1", "refseq_ac": "NP_852041", "refseq_name": "spermatogenesis-associated serine-rich protein 1", "gene_name": "Spats1", "gene_names_uniprotkb": "Spats1; Srsp1", "gene_names_refseq": "Spats1; Srsp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LSSDGTGLRVTDAPGLPRVM", "down_seq": "PSDTASGLGQKTSSTSSSSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" } ], "site_lbl": "Thr53" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "53", "end_pos": "53" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q811V6-1.71.71", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q811V6-1.71.71", "start_pos": 71, "end_pos": 71, "uniprot_canonical_ac": "Q811V6-1", "length": 281, "uniprot_id": "SPAS1_RAT", "protein_name": "Spermatogenesis-associated serine-rich protein 1", "refseq_ac": "NP_852041", "refseq_name": "spermatogenesis-associated serine-rich protein 1", "gene_name": "Spats1", "gene_names_uniprotkb": "Spats1; Srsp1", "gene_names_refseq": "Spats1; Srsp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" }, { "database": "iPTMnet", "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VMTPSDTASGLGQKTSSTSS", "down_seq": "SSSSSSSSPSSSSSAQANRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6" } ], "site_lbl": "Ser71" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "53", "end_pos": "53" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q811V6-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q811V6-1.74.74", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q811V6-1.77.77", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q811V6-1.78.78", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q811V6-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q811V6-1.91.91", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q811V6-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "Q811V6-1", "length": 281, "uniprot_id": "SPAS1_RAT", "protein_name": "Spermatogenesis-associated serine-rich protein 1", "refseq_ac": "NP_852041", "refseq_name": "spermatogenesis-associated serine-rich protein 1", "gene_name": "Spats1", "gene_names_uniprotkb": "Spats1; Srsp1", "gene_names_refseq": "Spats1; Srsp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" }, { "database": "iPTMnet", "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSDTASGLGQKTSSTSSSSS", "down_seq": "SSSSSPSSSSSAQANRSLKV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6" } ], "site_lbl": "Ser74" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "53", "end_pos": "53" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q811V6-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q811V6-1.77.77", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q811V6-1.78.78", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q811V6-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q811V6-1.91.91", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q811V6-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "Q811V6-1", "length": 281, "uniprot_id": "SPAS1_RAT", "protein_name": "Spermatogenesis-associated serine-rich protein 1", "refseq_ac": "NP_852041", "refseq_name": "spermatogenesis-associated serine-rich protein 1", "gene_name": "Spats1", "gene_names_uniprotkb": "Spats1; Srsp1", "gene_names_refseq": "Spats1; Srsp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" }, { "database": "iPTMnet", "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TASGLGQKTSSTSSSSSSSS", "down_seq": "SSPSSSSSAQANRSLKVSLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6" } ], "site_lbl": "Ser77" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "53", "end_pos": "53" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q811V6-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q811V6-1.74.74", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q811V6-1.78.78", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q811V6-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q811V6-1.91.91", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q811V6-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "Q811V6-1", "length": 281, "uniprot_id": "SPAS1_RAT", "protein_name": "Spermatogenesis-associated serine-rich protein 1", "refseq_ac": "NP_852041", "refseq_name": "spermatogenesis-associated serine-rich protein 1", "gene_name": "Spats1", "gene_names_uniprotkb": "Spats1; Srsp1", "gene_names_refseq": "Spats1; Srsp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" }, { "database": "iPTMnet", "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASGLGQKTSSTSSSSSSSSS", "down_seq": "SPSSSSSAQANRSLKVSLPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6" } ], "site_lbl": "Ser78" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "53", "end_pos": "53" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q811V6-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q811V6-1.74.74", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q811V6-1.77.77", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q811V6-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q811V6-1.91.91", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q811V6-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "Q811V6-1", "length": 281, "uniprot_id": "SPAS1_RAT", "protein_name": "Spermatogenesis-associated serine-rich protein 1", "refseq_ac": "NP_852041", "refseq_name": "spermatogenesis-associated serine-rich protein 1", "gene_name": "Spats1", "gene_names_uniprotkb": "Spats1; Srsp1", "gene_names_refseq": "Spats1; Srsp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" }, { "database": "iPTMnet", "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGLGQKTSSTSSSSSSSSSS", "down_seq": "PSSSSSAQANRSLKVSLPEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6" } ], "site_lbl": "Ser79" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "53", "end_pos": "53" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q811V6-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q811V6-1.74.74", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q811V6-1.77.77", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q811V6-1.78.78", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q811V6-1.91.91", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q811V6-1.91.91", "start_pos": 91, "end_pos": 91, "uniprot_canonical_ac": "Q811V6-1", "length": 281, "uniprot_id": "SPAS1_RAT", "protein_name": "Spermatogenesis-associated serine-rich protein 1", "refseq_ac": "NP_852041", "refseq_name": "spermatogenesis-associated serine-rich protein 1", "gene_name": "Spats1", "gene_names_uniprotkb": "Spats1; Srsp1", "gene_names_refseq": "Spats1; Srsp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" }, { "database": "iPTMnet", "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSSSSSSSPSSSSSAQANR", "down_seq": "LKVSLPEIQKEKYPEEFSLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q811V6", "url": "https://www.uniprot.org/uniprotkb/Q811V6" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q811V6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q811V6" } ], "site_lbl": "Ser91" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "53", "end_pos": "53" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q811V6-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q811V6-1.74.74", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q811V6-1.77.77", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q811V6-1.78.78", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q811V6-1.79.79", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56A18-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "Q56A18-1", "length": 376, "uniprot_id": "SMCE1_RAT", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1", "refseq_ac": "NP_001020164", "refseq_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform 2", "gene_name": "Smarce1", "gene_names_uniprotkb": "Smarce1; Baf57", "gene_names_refseq": "BAF57; RGD1304726; Smarce1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q56A18", "url": "https://www.uniprot.org/uniprotkb/Q56A18" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MSKRPSYAPPP", "down_seq": "PAPATASSGITIPKPPKPPD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr12", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "366", "end_pos": "366" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q56A18-1.366.366", "start_pos": 366, "end_pos": 366, "uniprot_canonical_ac": "Q56A18-1", "length": 376, "uniprot_id": "SMCE1_RAT", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1", "refseq_ac": "NP_001020164", "refseq_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform 2", "gene_name": "Smarce1", "gene_names_uniprotkb": "Smarce1; Baf57", "gene_names_refseq": "BAF57; RGD1304726; Smarce1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q56A18", "url": "https://www.uniprot.org/uniprotkb/Q56A18" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GTSDSNTGSESNSATVEEPP", "down_seq": "DPVPEDEKKE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr366", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "366", "end_pos": "366" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q56A18-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "Q56A18-1", "length": 376, "uniprot_id": "SMCE1_RAT", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1", "refseq_ac": "NP_001020164", "refseq_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform 2", "gene_name": "Smarce1", "gene_names_uniprotkb": "Smarce1; Baf57", "gene_names_refseq": "BAF57; RGD1304726; Smarce1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q56A18", "url": "https://www.uniprot.org/uniprotkb/Q56A18" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q56A18", "url": "https://www.uniprot.org/uniprotkb/Q56A18", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLQIEERHQEKKRKFLESTD", "down_seq": "FNNELKRLCGLKVEVDMEKI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q56A18", "url": "https://www.uniprot.org/uniprotkb/Q56A18" } ], "site_lbl": "Ser230" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "366", "end_pos": "366" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "230", "end_pos": "230" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5BJN8-1.267.267", "start_pos": 267, "end_pos": 267, "uniprot_canonical_ac": "Q5BJN8-1", "length": 448, "uniprot_id": "SDE2_RAT", "protein_name": "UBL fusion protein SDE2", "refseq_ac": "NP_001020141", "refseq_name": "UBL fusion protein SDE2", "gene_name": "Sde2", "gene_names_uniprotkb": "Sde2", "gene_names_refseq": "RGD1305572; Sde2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SCCARENGSDGGEVAADSPG", "down_seq": "VQSSGSGTRSESPKELQNPM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8" } ], "site_lbl": "Ser267" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "332", "end_pos": "332" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q5BJN8-1.275.275", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q5BJN8-1.279.279", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5BJN8-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "Q5BJN8-1", "length": 448, "uniprot_id": "SDE2_RAT", "protein_name": "UBL fusion protein SDE2", "refseq_ac": "NP_001020141", "refseq_name": "UBL fusion protein SDE2", "gene_name": "Sde2", "gene_names_uniprotkb": "Sde2", "gene_names_refseq": "RGD1305572; Sde2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SDGGEVAADSPGSVQSSGSG", "down_seq": "RSESPKELQNPMTEPGQGIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8" } ], "site_lbl": "Thr275" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "332", "end_pos": "332" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q5BJN8-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q5BJN8-1.279.279", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5BJN8-1.279.279", "start_pos": 279, "end_pos": 279, "uniprot_canonical_ac": "Q5BJN8-1", "length": 448, "uniprot_id": "SDE2_RAT", "protein_name": "UBL fusion protein SDE2", "refseq_ac": "NP_001020141", "refseq_name": "UBL fusion protein SDE2", "gene_name": "Sde2", "gene_names_uniprotkb": "Sde2", "gene_names_refseq": "RGD1305572; Sde2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVAADSPGSVQSSGSGTRSE", "down_seq": "PKELQNPMTEPGQGILENTG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8" } ], "site_lbl": "Ser279" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "332", "end_pos": "332" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q5BJN8-1.267.267", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q5BJN8-1.275.275", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5BJN8-1.324.324", "start_pos": 324, "end_pos": 324, "uniprot_canonical_ac": "Q5BJN8-1", "length": 448, "uniprot_id": "SDE2_RAT", "protein_name": "UBL fusion protein SDE2", "refseq_ac": "NP_001020141", "refseq_name": "UBL fusion protein SDE2", "gene_name": "Sde2", "gene_names_uniprotkb": "Sde2", "gene_names_refseq": "RGD1305572; Sde2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ETSTREHNERKTVTVTETEE", "down_seq": "PARKETESPEPTEKGQETGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8" } ], "site_lbl": "Thr324" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "332", "end_pos": "332" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q5BJN8-1.332.332", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5BJN8-1.332.332", "start_pos": 332, "end_pos": 332, "uniprot_canonical_ac": "Q5BJN8-1", "length": 448, "uniprot_id": "SDE2_RAT", "protein_name": "UBL fusion protein SDE2", "refseq_ac": "NP_001020141", "refseq_name": "UBL fusion protein SDE2", "gene_name": "Sde2", "gene_names_uniprotkb": "Sde2", "gene_names_refseq": "RGD1305572; Sde2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8" }, { "database": "iPTMnet", "id": "Q5BJN8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5BJN8" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5BJN8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5BJN8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERKTVTVTETEETPARKETE", "down_seq": "PEPTEKGQETGVIGEDRAAM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5BJN8", "url": "https://www.uniprot.org/uniprotkb/Q5BJN8" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5BJN8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5BJN8" } ], "site_lbl": "Ser332" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "267", "end_pos": "267" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "332", "end_pos": "332" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q5BJN8-1.324.324", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.100.100", "start_pos": 100, "end_pos": 100, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EELGVVVHEAPYSGSFTIEG", "down_seq": "NSFAQRFQGIYRCYASNNLG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn100", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05695-1.1021.1021", "start_pos": 1021, "end_pos": 1021, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GEAIVREGGTMALFGKPDFG", "down_seq": "ISVTAGENYSVVSWVPREGQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1021", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q05695-1.1029.1029", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05695-1.1029.1029", "start_pos": 1029, "end_pos": 1029, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GTMALFGKPDFGNISVTAGE", "down_seq": "YSVVSWVPREGQCNFRFHIL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1029", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q05695-1.1021.1021", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05695-1.1072.1072", "start_pos": 1072, "end_pos": 1072, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" }, { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals.", "journal": "Molecular omics", "date": "2021", "authors": "Matthies I, Abrahams JL, Jensen P, Oliveira T, Kolarich D, Larsen MR", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals", "journal": "Molecular Omics", "date": "2021", "authors": "Matthies I., Abrahams J.L., Jensen P., Oliveira T., Kolarich D., Larsen M.R.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "DOI", "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099", "database": "PubMed", "categories": [ "Other" ] }, { "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B", "database": "DOI", "categories": [ "Other" ] }, { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ALPEGKVSPDHQPQPQYVSY", "down_seq": "QSSYTQWDLQPDTKYEIHLM", "glycosylation": [ { "glytoucan_ac": "G02815KT", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1072", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1072", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.1106.1106", "start_pos": 1106, "end_pos": 1106, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KYEIHLMREKVLLHHLAVKT", "down_seq": "GTGPVRVSTTGSFASEGWFI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1106", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05695-1.202.202", "start_pos": 202, "end_pos": 202, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" }, { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ERVSMGQNGDLYFANVLTSD", "down_seq": "HSDYICNAHFPGTRTIIQKE", "glycosylation": [ { "glytoucan_ac": "G19379ID", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn202", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G25987BV", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn202", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G88725PI", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn202", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn202", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 3 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 3 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 3 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 3 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.246.246", "start_pos": 246, "end_pos": 246, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LRVKPTNSMIDRKPRLLFPT", "down_seq": "SSSHLVALQGQSLILECIAE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn246", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05695-1.293.293", "start_pos": 293, "end_pos": 293, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "N-Glycosylation in isolated rat nerve terminals.", "journal": "Molecular omics", "date": "2021", "authors": "Matthies I, Abrahams JL, Jensen P, Oliveira T, Kolarich D, Larsen MR", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals", "journal": "Molecular Omics", "date": "2021", "authors": "Matthies I., Abrahams J.L., Jensen P., Oliveira T., Kolarich D., Larsen M.R.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "DOI", "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] } ], "crossref": [ { "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B", "database": "DOI", "categories": [ "Other" ] }, { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IKWLHPSDPMPTDRVIYQNH", "down_seq": "KTLQLLNVGEEDDGEYTCLA", "glycosylation": [ { "glytoucan_ac": "G49955PK", "type": "N-linked;o-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn293", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn293", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.432.432", "start_pos": 432, "end_pos": 432, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LLANAYIYVVQLPARILTKD", "down_seq": "QTYMAVEGSTAYLLCKAFGA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn432", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05695-1.489.489", "start_pos": 489, "end_pos": 489, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QDERFFPYANGHLGIRDLQA", "down_seq": "DTGRYFCQAANDQNNVTILA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn489", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q05695-1.504.504", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05695-1.504.504", "start_pos": 504, "end_pos": 504, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RDLQANDTGRYFCQAANDQN", "down_seq": "VTILANLQVKEATQITQGPR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn504", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q05695-1.489.489", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05695-1.670.670", "start_pos": 670, "end_pos": 670, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" }, { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EFEDKEMAPEKWFSLGKVPG", "down_seq": "QTSTTLKLSPYVHYTFRVTA", "glycosylation": [ { "glytoucan_ac": "G02815KT", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn670", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G15486FH", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn670", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G16407EV", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn670", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G25987BV", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn670", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G83555HU", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn670", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G88725PI", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn670", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn670", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 7 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 6 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 6 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 6 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 6 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.725.725", "start_pos": 725, "end_pos": 725, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" }, { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TVVTPEAAPEKNPVDVRGEG", "down_seq": "ETNNMVITWKPLRWMDWNAP", "glycosylation": [ { "glytoucan_ac": "G44211QA", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn725", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G60033FS", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn725", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G65184UU", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn725", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G83633GK", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn725", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G85740DB", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn725", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn725", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 5 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 5 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 5 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 5 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.776.776", "start_pos": 776, "end_pos": 776, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LGKQETWKEQTVSDPFLVVS", "down_seq": "TSTFVPYEIKVQAVNNQGKG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn776", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05695-1.824.824", "start_pos": 824, "end_pos": 824, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GYSGEDYPQVSPELEDITIF", "down_seq": "SSTVLVRWRPVDLAQVKGHL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn824", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05695-1.848.848", "start_pos": 848, "end_pos": 848, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" }, { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VLVRWRPVDLAQVKGHLRGY", "down_seq": "VTYWWKGSQRKHSKRHVHKS", "glycosylation": [ { "glytoucan_ac": "G31852PQ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn848", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G41247ZX", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn848", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn848", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 2 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 2 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.875.875", "start_pos": 875, "end_pos": 875, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GSQRKHSKRHVHKSHMVVPA", "down_seq": "TTSAILSGLRPYSSYHVEVQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn875", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05695-1.968.968", "start_pos": 968, "end_pos": 968, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" }, { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals.", "journal": "Molecular omics", "date": "2021", "authors": "Matthies I, Abrahams JL, Jensen P, Oliveira T, Kolarich D, Larsen MR", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals", "journal": "Molecular Omics", "date": "2021", "authors": "Matthies I., Abrahams J.L., Jensen P., Oliveira T., Kolarich D., Larsen M.R.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "DOI", "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099", "database": "PubMed", "categories": [ "Other" ] }, { "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B", "database": "DOI", "categories": [ "Other" ] }, { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TGYLLSYHPLDGESKEQLFF", "down_seq": "LSDPELRTHNLTNLNPDLQY", "glycosylation": [ { "glytoucan_ac": "G25987BV", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn968", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "G50073PQ", "type": "N-linked;o-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn968", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "G82680EC", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "ASN-968", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn968", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G88725PI", "type": "N-linked;o-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn968", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn968", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q05695-1.978.978", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 2 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 2 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 2 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 2 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.978.978", "start_pos": 978, "end_pos": 978, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" }, { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals.", "journal": "Molecular omics", "date": "2021", "authors": "Matthies I, Abrahams JL, Jensen P, Oliveira T, Kolarich D, Larsen MR", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals", "journal": "Molecular Omics", "date": "2021", "authors": "Matthies I., Abrahams J.L., Jensen P., Oliveira T., Kolarich D., Larsen M.R.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "DOI", "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099", "database": "PubMed", "categories": [ "Other" ] }, { "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B", "database": "DOI", "categories": [ "Other" ] }, { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DGESKEQLFFNLSDPELRTH", "down_seq": "LTNLNPDLQYRFQLQATTHQ", "glycosylation": [ { "glytoucan_ac": "G19379ID", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn978", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G25987BV", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn978", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G79941IJ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn978", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G83555HU", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn978", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G87051GH", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn978", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G88725PI", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn978", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn978", "evidence": [ { "id": "Q05695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q05695#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q05695-1.968.968", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 7 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 6 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 6 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 6 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 6 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q05695", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q05695" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q05695", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q05695", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "Q05695", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q05695" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.1154.1154", "start_pos": 1154, "end_pos": 1154, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Involvement of p90rsk in neurite outgrowth mediated by the cell adhesion molecule L1.", "journal": "The Journal of biological chemistry", "date": "1996", "authors": "Wong EV, Schaefer AW, Landreth G, Lemmon V", "evidence": [ { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" } ], "reference": [ { "type": "PubMed", "id": "8663493", "url": "https://glygen.org/publication/PubMed/8663493" } ] } ], "crossref": [ { "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "8663493", "url": "https://glygen.org/publication/PubMed/8663493", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLLLILLILCFIKRSKGGKY", "down_seq": "VKDKEDTQVDSEARPMKDET", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "F1M7N7-1", "kinase_gene_name": "Rps6ka2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" }, { "database": "PubMed", "id": "8663493", "url": "https://glygen.org/publication/PubMed/8663493" } ], "site_lbl": "Ser1154" }, { "kinase_uniprot_canonical_ac": "Q63531-1", "kinase_gene_name": "Rps6ka1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" }, { "database": "PubMed", "id": "8663493", "url": "https://glygen.org/publication/PubMed/8663493" } ], "site_lbl": "Ser1154" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q05695-1.1165.1165", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.1165.1165", "start_pos": 1165, "end_pos": 1165, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IKRSKGGKYSVKDKEDTQVD", "down_seq": "EARPMKDETFGEYRSLESDN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "site_lbl": "Ser1165" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q05695-1.1154.1154", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q05695-1.1180.1180", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q05695-1.1183.1183", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q05695-1.1180.1180", "start_pos": 1180, "end_pos": 1180, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DTQVDSEARPMKDETFGEYR", "down_seq": "LESDNEEKAFGSSQPSLNGD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" } ], "site_lbl": "Ser1180" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q05695-1.1165.1165", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q05695-1.1183.1183", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q05695-1.1196.1196", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.1183.1183", "start_pos": 1183, "end_pos": 1183, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Casein kinase II phosphorylates the neural cell adhesion molecule L1.", "journal": "Journal of neurochemistry", "date": "1996", "authors": "Wong EV, Schaefer AW, Landreth G, Lemmon V", "evidence": [ { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" } ], "reference": [ { "type": "PubMed", "id": "8592152", "url": "https://glygen.org/publication/PubMed/8592152" } ] }, { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "8592152", "url": "https://glygen.org/publication/PubMed/8592152", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VDSEARPMKDETFGEYRSLE", "down_seq": "DNEEKAFGSSQPSLNGDIKP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "P19139-1", "kinase_gene_name": "Csnk2a1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" }, { "database": "PubMed", "id": "8592152", "url": "https://glygen.org/publication/PubMed/8592152" } ], "site_lbl": "Ser1183" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" }, { "database": "PubMed", "id": "8592152", "url": "https://glygen.org/publication/PubMed/8592152" } ], "site_lbl": "Ser1183" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q05695-1.1165.1165", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q05695-1.1180.1180", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q05695-1.1196.1196", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.1196.1196", "start_pos": 1196, "end_pos": 1196, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GEYRSLESDNEEKAFGSSQP", "down_seq": "LNGDIKPLGSDDSLADYGGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" } ], "site_lbl": "Ser1196" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q05695-1.1180.1180", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q05695-1.1183.1183", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.1245.1245", "start_pos": 1245, "end_pos": 1245, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSFIGQYSGKKEKEAAGGND", "down_seq": "SGATSPINPAVALE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" } ], "site_lbl": "Ser1245" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q05695-1.1246.1246", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q05695-1.1250.1250", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.1246.1246", "start_pos": 1246, "end_pos": 1246, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SFIGQYSGKKEKEAAGGNDS", "down_seq": "GATSPINPAVALE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q05695", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05695" } ], "site_lbl": "Ser1246" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q05695-1.1245.1245", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q05695-1.1250.1250", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q05695-1.1250.1250", "start_pos": 1250, "end_pos": 1250, "uniprot_canonical_ac": "Q05695-1", "length": 1259, "uniprot_id": "L1CAM_RAT", "protein_name": "Neural cell adhesion molecule L1", "refseq_ac": "NP_059041", "refseq_name": "neural cell adhesion molecule L1 isoform 1 precursor", "gene_name": "L1cam", "gene_names_uniprotkb": "L1cam; Caml1", "gene_names_refseq": "Hsas; Hyd; L1cam; N-CAM L1; NCAML1; NgCAM", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QYSGKKEKEAAGGNDSSGAT", "down_seq": "PINPAVALE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q05695", "url": "https://www.uniprot.org/uniprotkb/Q05695" } ], "site_lbl": "Ser1250" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "1021", "end_pos": "1021" }, { "start_pos": "1029", "end_pos": "1029" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1106", "end_pos": "1106" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "504", "end_pos": "504" }, { "start_pos": "670", "end_pos": "670" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "824", "end_pos": "824" }, { "start_pos": "848", "end_pos": "848" }, { "start_pos": "875", "end_pos": "875" }, { "start_pos": "968", "end_pos": "968" }, { "start_pos": "978", "end_pos": "978" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1154", "end_pos": "1154" }, { "start_pos": "1165", "end_pos": "1165" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1183", "end_pos": "1183" }, { "start_pos": "1196", "end_pos": "1196" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1246", "end_pos": "1246" }, { "start_pos": "1250", "end_pos": "1250" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q05695-1.1245.1245", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q05695-1.1246.1246", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1569.1569", "start_pos": 1569, "end_pos": 1569, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PTSKSTIEEDLKKLIDLESP", "down_seq": "PESQKNFKFHGLSSPQSPFP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1569", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Thr1569" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O35412-1.1567.1567", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O35412-1.1572.1572", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O35412-1.1583.1583", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O35412-1.1586.1586", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GESFFGLLKGYKDDRADRGP", "down_seq": "PTKLSDFLITGGGKGSGFSL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr239", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "O35412-1.255.255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.795.795", "start_pos": 795, "end_pos": 795, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FVIVRAHNPCTESVCYSVAV", "down_seq": "RSRDVPSFGPPIPKGVTFPK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr795", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1344.1344", "start_pos": 1344, "end_pos": 1344, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Regulation of postsynaptic RapGAP SPAR by Polo-like kinase 2 and the SCFbeta-TRCP ubiquitin ligase in hippocampal neurons.", "journal": "The Journal of biological chemistry", "date": "2008", "authors": "Ang XL, Seeburg DP, Sheng M, Harper JW", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "reference": [ { "type": "PubMed", "id": "18723513", "url": "https://glygen.org/publication/PubMed/18723513" } ] } ], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18723513", "url": "https://glygen.org/publication/PubMed/18723513", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GDRTESDLNSYNYLQGTSAD", "down_seq": "GIDTASYGLSHGSTASLGAS", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes ubiquitination and degradation by the proteasome; when associated with A-1348.", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "PubMed", "id": "18723513", "url": "https://glygen.org/publication/PubMed/18723513" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PLK2", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" }, { "database": "PubMed", "id": "18723513", "url": "https://glygen.org/publication/PubMed/18723513" } ], "site_lbl": "Ser1344" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O35412-1.1348.1348", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35412-1.1348.1348", "start_pos": 1348, "end_pos": 1348, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Regulation of postsynaptic RapGAP SPAR by Polo-like kinase 2 and the SCFbeta-TRCP ubiquitin ligase in hippocampal neurons.", "journal": "The Journal of biological chemistry", "date": "2008", "authors": "Ang XL, Seeburg DP, Sheng M, Harper JW", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "reference": [ { "type": "PubMed", "id": "18723513", "url": "https://glygen.org/publication/PubMed/18723513" } ] } ], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18723513", "url": "https://glygen.org/publication/PubMed/18723513", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ESDLNSYNYLQGTSADSGID", "down_seq": "ASYGLSHGSTASLGASTSSP", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Abolishes ubiquitination and degradation by the proteasome; when associated with A-1344.", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "PubMed", "id": "18723513", "url": "https://glygen.org/publication/PubMed/18723513" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PLK2", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" }, { "database": "PubMed", "id": "18723513", "url": "https://glygen.org/publication/PubMed/18723513" } ], "site_lbl": "Thr1348" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O35412-1.1344.1344", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O35412-1.1367.1367", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35412-1.1367.1367", "start_pos": 1367, "end_pos": 1367, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Critical role of CDK5 and Polo-like kinase 2 in homeostatic synaptic plasticity during elevated activity.", "journal": "Neuron", "date": "2008", "authors": "Seeburg DP, Feliu-Mojer M, Gaiottino J, Pak DT, Sheng M", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "reference": [ { "type": "PubMed", "id": "18498738", "url": "https://glygen.org/publication/PubMed/18498738" } ] } ], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18498738", "url": "https://glygen.org/publication/PubMed/18498738", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DTASYGLSHGSTASLGASTS", "down_seq": "PRSGPGKEKVAPLWHSSSEV", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes phosphorylation by CDK5 and subsequent phosphorylation by PLK2, leading to prevent ubiquitination and degradation by the proteasome.", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "PubMed", "id": "18498738", "url": "https://glygen.org/publication/PubMed/18498738" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CDK5", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" }, { "database": "PubMed", "id": "18498738", "url": "https://glygen.org/publication/PubMed/18498738" } ], "site_lbl": "Ser1367" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O35412-1.1348.1348", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O35412-1.1384.1384", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35412-1.743.743", "start_pos": 743, "end_pos": 743, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Regulation of dendritic spine morphology by SPAR, a PSD-95-associated RapGAP.", "journal": "Neuron", "date": "2001", "authors": "Pak DT, Yang S, Rudolph-Correia S, Kim E, Sheng M", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "reference": [ { "type": "PubMed", "id": "11502259", "url": "https://glygen.org/publication/PubMed/11502259" } ] } ], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11502259", "url": "https://glygen.org/publication/PubMed/11502259", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "FHVSTMLPYTPNNKQQLLRK", "down_seq": "HIGNDIVTIVFQEPGAQPFS", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Decreases stimulation of the GTPase activity of RAP2A.", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "PubMed", "id": "11502259", "url": "https://glygen.org/publication/PubMed/11502259" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35412-1.846.847", "start_pos": 846, "end_pos": 847, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Regulation of dendritic spine morphology by SPAR, a PSD-95-associated RapGAP.", "journal": "Neuron", "date": "2001", "authors": "Pak DT, Yang S, Rudolph-Correia S, Kim E, Sheng M", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "reference": [ { "type": "PubMed", "id": "11502259", "url": "https://glygen.org/publication/PubMed/11502259" } ] } ], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11502259", "url": "https://glygen.org/publication/PubMed/11502259", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "RT", "start_aa": "R", "up_seq": "KVINAENAAHKSEKFRAMAT", "down_seq": "RQEYLKDLAEKNVTNTPIDP", "mutagenesis": [ { "sequence_org": "RT", "sequence_mut": "AS", "comment": "Abolishes stimulation of the GTPase activity of RAP2A.", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "PubMed", "id": "11502259", "url": "https://glygen.org/publication/PubMed/11502259" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35412-1.1117.1117", "start_pos": 1117, "end_pos": 1117, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YKFPFRSNNKWQRNAGKGAH", "down_seq": "PQVPLQLQSPMISRVNAGKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1117" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "O35412-1.1126.1126", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1126.1126", "start_pos": 1126, "end_pos": 1126, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KWQRNAGKGAHSPQVPLQLQ", "down_seq": "PMISRVNAGKGDGKMPLPER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1126" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O35412-1.1117.1117", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1155.1155", "start_pos": 1155, "end_pos": 1155, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GKGDGKMPLPERAANIPRSI", "down_seq": "SDGRPLERRLSPGSDIYVTV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1155" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "O35412-1.1166.1166", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1166.1166", "start_pos": 1166, "end_pos": 1166, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RAANIPRSISSDGRPLERRL", "down_seq": "PGSDIYVTVSSMALARSQCR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1166" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O35412-1.1155.1155", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1188.1188", "start_pos": 1188, "end_pos": 1188, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSDIYVTVSSMALARSQCRN", "down_seq": "PSNLSSSSETGSGGGTYRQK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1188" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1209.1209", "start_pos": 1209, "end_pos": 1209, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSNLSSSSETGSGGGTYRQK", "down_seq": "MPEGFGVSRRSPASIDRQNT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1209" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "O35412-1.1220.1220", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1220.1220", "start_pos": 1220, "end_pos": 1220, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGGGTYRQKSMPEGFGVSRR", "down_seq": "PASIDRQNTQSDIGGSGKST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1220" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O35412-1.1209.1209", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1273.1273", "start_pos": 1273, "end_pos": 1273, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QMEPTCHLPAVSKVLPAFRE", "down_seq": "PSGRLMRQDPVVHLSPNKQG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1273" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "O35412-1.1288.1288", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1288.1288", "start_pos": 1288, "end_pos": 1288, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PAFRESPSGRLMRQDPVVHL", "down_seq": "PNKQGHSDSHYSSHSSSNTL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "site_lbl": "Ser1288" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O35412-1.1273.1273", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35412-1.1384.1384", "start_pos": 1384, "end_pos": 1384, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STSSPRSGPGKEKVAPLWHS", "down_seq": "SEVLSLADRTLETEGHGMDR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1384" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O35412-1.1367.1367", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1408.1408", "start_pos": 1408, "end_pos": 1408, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSLADRTLETEGHGMDRKTE", "down_seq": "SLSLDIHSKSQGGSSPLTRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1408" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O35412-1.1409.1409", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1409.1409", "start_pos": 1409, "end_pos": 1409, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLADRTLETEGHGMDRKTES", "down_seq": "LSLDIHSKSQGGSSPLTREN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1409" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O35412-1.1408.1408", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1430.1430", "start_pos": 1430, "end_pos": 1430, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSLDIHSKSQGGSSPLTREN", "down_seq": "TFSINDATSHTSTMSSRHSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1430" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "O35412-1.1449.1449", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1449.1449", "start_pos": 1449, "end_pos": 1449, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NSTFSINDATSHTSTMSSRH", "down_seq": "ASPVVFSSARSSPKEELHPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "site_lbl": "Ser1449" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O35412-1.1430.1430", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O35412-1.1451.1451", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35412-1.1451.1451", "start_pos": 1451, "end_pos": 1451, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TFSINDATSHTSTMSSRHSA", "down_seq": "PVVFSSARSSPKEELHPTTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "site_lbl": "Ser1451" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O35412-1.1449.1449", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35412-1.1546.1546", "start_pos": 1546, "end_pos": 1546, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SDGNEIAHTRLRASTRDLRA", "down_seq": "PKPTSKSTIEEDLKKLIDLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1546" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1567.1567", "start_pos": 1567, "end_pos": 1567, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PKPTSKSTIEEDLKKLIDLE", "down_seq": "PTPESQKNFKFHGLSSPQSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "site_lbl": "Ser1567" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O35412-1.1569.1569", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O35412-1.1572.1572", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O35412-1.1583.1583", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O35412-1.1586.1586", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35412-1.1572.1572", "start_pos": 1572, "end_pos": 1572, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSTIEEDLKKLIDLESPTPE", "down_seq": "QKNFKFHGLSSPQSPFPSTP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1572" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O35412-1.1567.1567", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O35412-1.1569.1569", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O35412-1.1583.1583", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O35412-1.1586.1586", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1583.1583", "start_pos": 1583, "end_pos": 1583, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IDLESPTPESQKNFKFHGLS", "down_seq": "PQSPFPSTPTSRRALHRTLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1583" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O35412-1.1567.1567", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O35412-1.1569.1569", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O35412-1.1572.1572", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O35412-1.1586.1586", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O35412-1.1603.1603", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1586.1586", "start_pos": 1586, "end_pos": 1586, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESPTPESQKNFKFHGLSSPQ", "down_seq": "PFPSTPTSRRALHRTLSDES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1586" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O35412-1.1567.1567", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O35412-1.1569.1569", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O35412-1.1572.1572", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O35412-1.1583.1583", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O35412-1.1603.1603", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O35412-1.1606.1606", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1603.1603", "start_pos": 1603, "end_pos": 1603, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPQSPFPSTPTSRRALHRTL", "down_seq": "DESIYSSQREHFFTSRASLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "site_lbl": "Ser1603" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O35412-1.1583.1583", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O35412-1.1586.1586", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O35412-1.1606.1606", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O35412-1.1621.1621", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35412-1.1606.1606", "start_pos": 1606, "end_pos": 1606, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPFPSTPTSRRALHRTLSDE", "down_seq": "IYSSQREHFFTSRASLLDQA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1606" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O35412-1.1586.1586", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O35412-1.1603.1603", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O35412-1.1621.1621", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1621.1621", "start_pos": 1621, "end_pos": 1621, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLSDESIYSSQREHFFTSRA", "down_seq": "LLDQALPNDVFFSSTYPSLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1621" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O35412-1.1603.1603", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O35412-1.1606.1606", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KTGPAESMDSRFLMPEAYPS", "down_seq": "PRKALRRIRQRSNSDITISE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser162" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1665.1665", "start_pos": 1665, "end_pos": 1665, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLRRPSYTLGMKSLHGEFFA", "down_seq": "DSSLTDIQETRRQPIPDPGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1665" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O35412-1.1668.1668", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1668.1668", "start_pos": 1668, "end_pos": 1668, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RPSYTLGMKSLHGEFFASDS", "down_seq": "LTDIQETRRQPIPDPGLMPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1668" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O35412-1.1665.1665", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1726.1726", "start_pos": 1726, "end_pos": 1726, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AYEVQRASFFAASDENHRPL", "down_seq": "AASNSDQLEEQALVQMKSYS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1726" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O35412-1.1729.1729", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O35412-1.1746.1746", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1729.1729", "start_pos": 1729, "end_pos": 1729, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VQRASFFAASDENHRPLSAA", "down_seq": "NSDQLEEQALVQMKSYSSSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1729" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O35412-1.1726.1726", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O35412-1.1746.1746", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O35412-1.1747.1747", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1746.1746", "start_pos": 1746, "end_pos": 1746, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SAASNSDQLEEQALVQMKSY", "down_seq": "SSKDSSPTLASKVDQLEGML", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1746" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O35412-1.1726.1726", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O35412-1.1729.1729", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O35412-1.1747.1747", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O35412-1.1752.1752", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1747.1747", "start_pos": 1747, "end_pos": 1747, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AASNSDQLEEQALVQMKSYS", "down_seq": "SKDSSPTLASKVDQLEGMLK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser1747" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O35412-1.1729.1729", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O35412-1.1746.1746", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O35412-1.1752.1752", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.1752.1752", "start_pos": 1752, "end_pos": 1752, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DQLEEQALVQMKSYSSSKDS", "down_seq": "PTLASKVDQLEGMLKMLRED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35412", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35412" } ], "site_lbl": "Ser1752" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O35412-1.1746.1746", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O35412-1.1747.1747", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35412-1.187.187", "start_pos": 187, "end_pos": 187, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRRIRQRSNSDITISELDVD", "down_seq": "FDECISPTYKSGPSLHREYG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser187" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "O35412-1.193.193", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.193.193", "start_pos": 193, "end_pos": 193, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSNSDITISELDVDSFDECI", "down_seq": "PTYKSGPSLHREYGSTSSID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser193" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O35412-1.187.187", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O35412-1.208.208", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.208.208", "start_pos": 208, "end_pos": 208, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FDECISPTYKSGPSLHREYG", "down_seq": "TSSIDKQGTSGESFFGLLKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser208" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O35412-1.193.193", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.255.255", "start_pos": 255, "end_pos": 255, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DRGPTPTKLSDFLITGGGKG", "down_seq": "GFSLDVIDGPISQRENLRLF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser255" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O35412-1.239.239", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35412-1.288.288", "start_pos": 288, "end_pos": 288, "uniprot_canonical_ac": "O35412-1", "length": 1822, "uniprot_id": "SI1L1_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 1", "refseq_ac": "NP_647546", "refseq_name": "signal-induced proliferation-associated 1-like protein 1 isoform 1", "gene_name": "Sipa1l1", "gene_names_uniprotkb": "Sipa1l1; Spa1", "gene_names_refseq": "SPAL; Sipa1l1; Spa-1; Spa1; Spar", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QRENLRLFKEREKPLKRRSK", "down_seq": "ETGDSSIFRKLRNAKGEELG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35412", "url": "https://www.uniprot.org/uniprotkb/O35412" } ], "site_lbl": "Ser288" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "239", "end_pos": "239" }, { "start_pos": "795", "end_pos": "795" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "743", "end_pos": "743" }, { "start_pos": "846", "end_pos": "847" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1117", "end_pos": "1117" }, { "start_pos": "1126", "end_pos": "1126" }, { "start_pos": "1155", "end_pos": "1155" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1188", "end_pos": "1188" }, { "start_pos": "1209", "end_pos": "1209" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1273", "end_pos": "1273" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1344", "end_pos": "1344" }, { "start_pos": "1348", "end_pos": "1348" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1384", "end_pos": "1384" }, { "start_pos": "1408", "end_pos": "1408" }, { "start_pos": "1409", "end_pos": "1409" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1449", "end_pos": "1449" }, { "start_pos": "1451", "end_pos": "1451" }, { "start_pos": "1546", "end_pos": "1546" }, { "start_pos": "1567", "end_pos": "1567" }, { "start_pos": "1569", "end_pos": "1569" }, { "start_pos": "1572", "end_pos": "1572" }, { "start_pos": "1583", "end_pos": "1583" }, { "start_pos": "1586", "end_pos": "1586" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1606", "end_pos": "1606" }, { "start_pos": "1621", "end_pos": "1621" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "1665", "end_pos": "1665" }, { "start_pos": "1668", "end_pos": "1668" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1729", "end_pos": "1729" }, { "start_pos": "1746", "end_pos": "1746" }, { "start_pos": "1747", "end_pos": "1747" }, { "start_pos": "1752", "end_pos": "1752" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "288", "end_pos": "288" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62876-1.73.73", "start_pos": 73, "end_pos": 73, "uniprot_canonical_ac": "Q62876-1", "length": 234, "uniprot_id": "SNG1_RAT", "protein_name": "Synaptogyrin-1", "refseq_ac": "NP_062039", "refseq_name": "synaptogyrin-1", "gene_name": "Syngr1", "gene_names_uniprotkb": "Syngr1", "gene_names_refseq": "Syngr1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62876", "url": "https://www.uniprot.org/uniprotkb/Q62876" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EEEEEFCIYNRNPNACSYGV", "down_seq": "VGVLAFLTCLVYLALDVYFP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr73", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "73", "end_pos": "73" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97690-1.1013.1013", "start_pos": 1013, "end_pos": 1013, "uniprot_canonical_ac": "P97690-1", "length": 1191, "uniprot_id": "SMC3_RAT", "protein_name": "Structural maintenance of chromosomes protein 3", "refseq_ac": "", "refseq_name": "", "gene_name": "Smc3", "gene_names_uniprotkb": "Smc3; Bam; Bmh; Cspg6; Smc3l1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FSEQKEKLIKRQEELDRGYK", "down_seq": "IMELMNVLELRKYEAIQLTF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "site_lbl": "Ser1013" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1013", "end_pos": "1013" }, { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "1067", "end_pos": "1067" }, { "start_pos": "1074", "end_pos": "1074" }, { "start_pos": "1083", "end_pos": "1083" }, { "start_pos": "783", "end_pos": "783" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "886", "end_pos": "886" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97690-1.1065.1065", "start_pos": 1065, "end_pos": 1065, "uniprot_canonical_ac": "P97690-1", "length": 1191, "uniprot_id": "SMC3_RAT", "protein_name": "Structural maintenance of chromosomes protein 3", "refseq_ac": "", "refseq_name": "", "gene_name": "Smc3", "gene_names_uniprotkb": "Smc3; Bam; Bmh; Cspg6; Smc3l1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QKLVPGAKATLVMKKGDVEG", "down_seq": "QSQDEGEGSGESERGSGSQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "site_lbl": "Ser1065" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1013", "end_pos": "1013" }, { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "1067", "end_pos": "1067" }, { "start_pos": "1074", "end_pos": "1074" }, { "start_pos": "1083", "end_pos": "1083" }, { "start_pos": "783", "end_pos": "783" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "886", "end_pos": "886" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P97690-1.1067.1067", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P97690-1.1074.1074", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P97690-1.1083.1083", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97690-1.1067.1067", "start_pos": 1067, "end_pos": 1067, "uniprot_canonical_ac": "P97690-1", "length": 1191, "uniprot_id": "SMC3_RAT", "protein_name": "Structural maintenance of chromosomes protein 3", "refseq_ac": "", "refseq_name": "", "gene_name": "Smc3", "gene_names_uniprotkb": "Smc3; Bam; Bmh; Cspg6; Smc3l1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" }, { "database": "iPTMnet", "id": "P97690", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97690" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97690", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97690", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVPGAKATLVMKKGDVEGSQ", "down_seq": "QDEGEGSGESERGSGSQSSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97690", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97690" } ], "site_lbl": "Ser1067" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1013", "end_pos": "1013" }, { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "1067", "end_pos": "1067" }, { "start_pos": "1074", "end_pos": "1074" }, { "start_pos": "1083", "end_pos": "1083" }, { "start_pos": "783", "end_pos": "783" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "886", "end_pos": "886" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P97690-1.1065.1065", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P97690-1.1074.1074", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P97690-1.1083.1083", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97690-1.1074.1074", "start_pos": 1074, "end_pos": 1074, "uniprot_canonical_ac": "P97690-1", "length": 1191, "uniprot_id": "SMC3_RAT", "protein_name": "Structural maintenance of chromosomes protein 3", "refseq_ac": "", "refseq_name": "", "gene_name": "Smc3", "gene_names_uniprotkb": "Smc3; Bam; Bmh; Cspg6; Smc3l1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" }, { "database": "iPTMnet", "id": "P97690", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97690" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97690", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97690", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLVMKKGDVEGSQSQDEGEG", "down_seq": "GESERGSGSQSSVPSVDQFT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97690", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97690" } ], "site_lbl": "Ser1074" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1013", "end_pos": "1013" }, { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "1067", "end_pos": "1067" }, { "start_pos": "1074", "end_pos": "1074" }, { "start_pos": "1083", "end_pos": "1083" }, { "start_pos": "783", "end_pos": "783" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "886", "end_pos": "886" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P97690-1.1065.1065", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P97690-1.1067.1067", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P97690-1.1083.1083", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97690-1.1083.1083", "start_pos": 1083, "end_pos": 1083, "uniprot_canonical_ac": "P97690-1", "length": 1191, "uniprot_id": "SMC3_RAT", "protein_name": "Structural maintenance of chromosomes protein 3", "refseq_ac": "", "refseq_name": "", "gene_name": "Smc3", "gene_names_uniprotkb": "Smc3; Bam; Bmh; Cspg6; Smc3l1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EGSQSQDEGEGSGESERGSG", "down_seq": "QSSVPSVDQFTGVGIRVSFT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "site_lbl": "Ser1083" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1013", "end_pos": "1013" }, { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "1067", "end_pos": "1067" }, { "start_pos": "1074", "end_pos": "1074" }, { "start_pos": "1083", "end_pos": "1083" }, { "start_pos": "783", "end_pos": "783" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "886", "end_pos": "886" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P97690-1.1065.1065", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P97690-1.1067.1067", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P97690-1.1074.1074", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97690-1.783.783", "start_pos": 783, "end_pos": 783, "uniprot_canonical_ac": "P97690-1", "length": 1191, "uniprot_id": "SMC3_RAT", "protein_name": "Structural maintenance of chromosomes protein 3", "refseq_ac": "", "refseq_name": "", "gene_name": "Smc3", "gene_names_uniprotkb": "Smc3; Bam; Bmh; Cspg6; Smc3l1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LEASLHAMESTRESLKAELG", "down_seq": "DLPSQLSLEDQKRVDALNDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "site_lbl": "Thr783" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1013", "end_pos": "1013" }, { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "1067", "end_pos": "1067" }, { "start_pos": "1074", "end_pos": "1074" }, { "start_pos": "1083", "end_pos": "1083" }, { "start_pos": "783", "end_pos": "783" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "886", "end_pos": "886" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P97690-1.787.787", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97690-1.787.787", "start_pos": 787, "end_pos": 787, "uniprot_canonical_ac": "P97690-1", "length": 1191, "uniprot_id": "SMC3_RAT", "protein_name": "Structural maintenance of chromosomes protein 3", "refseq_ac": "", "refseq_name": "", "gene_name": "Smc3", "gene_names_uniprotkb": "Smc3; Bam; Bmh; Cspg6; Smc3l1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LHAMESTRESLKAELGTDLP", "down_seq": "QLSLEDQKRVDALNDEIRQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "site_lbl": "Ser787" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1013", "end_pos": "1013" }, { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "1067", "end_pos": "1067" }, { "start_pos": "1074", "end_pos": "1074" }, { "start_pos": "1083", "end_pos": "1083" }, { "start_pos": "783", "end_pos": "783" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "886", "end_pos": "886" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P97690-1.783.783", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97690-1.886.886", "start_pos": 886, "end_pos": 886, "uniprot_canonical_ac": "P97690-1", "length": 1191, "uniprot_id": "SMC3_RAT", "protein_name": "Structural maintenance of chromosomes protein 3", "refseq_ac": "", "refseq_name": "", "gene_name": "Smc3", "gene_names_uniprotkb": "Smc3; Bam; Bmh; Cspg6; Smc3l1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEAINKRVKDTMARSEDLDN", "down_seq": "IDKTEAGIKELQKSMERWKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97690", "url": "https://www.uniprot.org/uniprotkb/P97690" } ], "site_lbl": "Ser886" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1013", "end_pos": "1013" }, { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "1067", "end_pos": "1067" }, { "start_pos": "1074", "end_pos": "1074" }, { "start_pos": "1083", "end_pos": "1083" }, { "start_pos": "783", "end_pos": "783" }, { "start_pos": "787", "end_pos": "787" }, { "start_pos": "886", "end_pos": "886" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M824-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "Q5M824-1", "length": 469, "uniprot_id": "SHC1_RAT", "protein_name": "SHC-transforming protein 1", "refseq_ac": "NP_445969", "refseq_name": "SHC-transforming protein 1 isoform b", "gene_name": "Shc1", "gene_names_uniprotkb": "Shc1", "gene_names_refseq": "P66shc; Shc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MAGFDGSAWDEEEEELPDHQ", "down_seq": "YNDFPGKEPPLGGVVDMRLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824" } ], "site_lbl": "Tyr239" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "339", "end_pos": "339" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q5M824-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M824-1.240.240", "start_pos": 240, "end_pos": 240, "uniprot_canonical_ac": "Q5M824-1", "length": 469, "uniprot_id": "SHC1_RAT", "protein_name": "SHC-transforming protein 1", "refseq_ac": "NP_445969", "refseq_name": "SHC-transforming protein 1 isoform b", "gene_name": "Shc1", "gene_names_uniprotkb": "Shc1", "gene_names_refseq": "P66shc; Shc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "AGFDGSAWDEEEEELPDHQY", "down_seq": "NDFPGKEPPLGGVVDMRLRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824" } ], "site_lbl": "Tyr240" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "339", "end_pos": "339" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q5M824-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M824-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "Q5M824-1", "length": 469, "uniprot_id": "SHC1_RAT", "protein_name": "SHC-transforming protein 1", "refseq_ac": "NP_445969", "refseq_name": "SHC-transforming protein 1 isoform b", "gene_name": "Shc1", "gene_names_uniprotkb": "Shc1", "gene_names_refseq": "P66shc; Shc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRRTRVEGGQLGGEEWTRHG", "down_seq": "FVNKPTRGWLHPNDKVMGPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824" } ], "site_lbl": "Ser29" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "339", "end_pos": "339" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M824-1.313.313", "start_pos": 313, "end_pos": 313, "uniprot_canonical_ac": "Q5M824-1", "length": 469, "uniprot_id": "SHC1_RAT", "protein_name": "SHC-transforming protein 1", "refseq_ac": "NP_445969", "refseq_name": "SHC-transforming protein 1 isoform b", "gene_name": "Shc1", "gene_names_uniprotkb": "Shc1", "gene_names_refseq": "P66shc; Shc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "RKQMLPPPPCPGRELFDDPS", "down_seq": "VNIQNLDKARQAGGGAGPPN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824" } ], "site_lbl": "Tyr313" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "339", "end_pos": "339" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M824-1.339.339", "start_pos": 339, "end_pos": 339, "uniprot_canonical_ac": "Q5M824-1", "length": 469, "uniprot_id": "SHC1_RAT", "protein_name": "SHC-transforming protein 1", "refseq_ac": "NP_445969", "refseq_name": "SHC-transforming protein 1 isoform b", "gene_name": "Shc1", "gene_names_uniprotkb": "Shc1", "gene_names_refseq": "P66shc; Shc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LDKARQAGGGAGPPNPSVNG", "down_seq": "APRDLFDMKPFEDALRVPPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M824", "url": "https://www.uniprot.org/uniprotkb/Q5M824" } ], "site_lbl": "Ser339" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "339", "end_pos": "339" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q71MB6-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "Q71MB6-1", "length": 724, "uniprot_id": "SO4C1_RAT", "protein_name": "Solute carrier organic anion transporter family member 4C1", "refseq_ac": "NP_001002024", "refseq_name": "solute carrier organic anion transporter family member 4C1", "gene_name": "Slco4c1", "gene_names_uniprotkb": "Slco4c1; Oatp4c1; Slc21a20", "gene_names_refseq": "Oatp-H; Oatp-M1; Oatp4c1; Slc21A20; Slco4c1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" }, { "database": "iPTMnet", "id": "Q71MB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q71MB6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q71MB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q71MB6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MQGSKGVENPAFVP", "down_seq": "SPDTPRRASASPSQVEVSAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q71MB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q71MB6" } ], "site_lbl": "Ser15" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "28", "end_pos": "28" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q71MB6-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q71MB6-1.19.19", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q71MB6-1.24.24", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q71MB6-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q71MB6-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q71MB6-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "Q71MB6-1", "length": 724, "uniprot_id": "SO4C1_RAT", "protein_name": "Solute carrier organic anion transporter family member 4C1", "refseq_ac": "NP_001002024", "refseq_name": "solute carrier organic anion transporter family member 4C1", "gene_name": "Slco4c1", "gene_names_uniprotkb": "Slco4c1; Oatp4c1; Slc21a20", "gene_names_refseq": "Oatp-H; Oatp-M1; Oatp4c1; Slc21A20; Slco4c1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" }, { "database": "iPTMnet", "id": "Q71MB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q71MB6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q71MB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q71MB6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MQGSKGVENPAFVPS", "down_seq": "PDTPRRASASPSQVEVSAVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q71MB6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q71MB6" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "28", "end_pos": "28" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q71MB6-1.15.15", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q71MB6-1.19.19", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q71MB6-1.24.24", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q71MB6-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q71MB6-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q71MB6-1.19.19", "start_pos": 19, "end_pos": 19, "uniprot_canonical_ac": "Q71MB6-1", "length": 724, "uniprot_id": "SO4C1_RAT", "protein_name": "Solute carrier organic anion transporter family member 4C1", "refseq_ac": "NP_001002024", "refseq_name": "solute carrier organic anion transporter family member 4C1", "gene_name": "Slco4c1", "gene_names_uniprotkb": "Slco4c1; Oatp4c1; Slc21a20", "gene_names_refseq": "Oatp-H; Oatp-M1; Oatp4c1; Slc21A20; Slco4c1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MQGSKGVENPAFVPSSPD", "down_seq": "PRRASASPSQVEVSAVASRN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" } ], "site_lbl": "Thr19" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "28", "end_pos": "28" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q71MB6-1.15.15", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q71MB6-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q71MB6-1.24.24", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q71MB6-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q71MB6-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q71MB6-1.24.24", "start_pos": 24, "end_pos": 24, "uniprot_canonical_ac": "Q71MB6-1", "length": 724, "uniprot_id": "SO4C1_RAT", "protein_name": "Solute carrier organic anion transporter family member 4C1", "refseq_ac": "NP_001002024", "refseq_name": "solute carrier organic anion transporter family member 4C1", "gene_name": "Slco4c1", "gene_names_uniprotkb": "Slco4c1; Oatp4c1; Slc21a20", "gene_names_refseq": "Oatp-H; Oatp-M1; Oatp4c1; Slc21A20; Slco4c1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKGVENPAFVPSSPDTPRRA", "down_seq": "ASPSQVEVSAVASRNQNGGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" } ], "site_lbl": "Ser24" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "28", "end_pos": "28" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q71MB6-1.15.15", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q71MB6-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q71MB6-1.19.19", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q71MB6-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q71MB6-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q71MB6-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "Q71MB6-1", "length": 724, "uniprot_id": "SO4C1_RAT", "protein_name": "Solute carrier organic anion transporter family member 4C1", "refseq_ac": "NP_001002024", "refseq_name": "solute carrier organic anion transporter family member 4C1", "gene_name": "Slco4c1", "gene_names_uniprotkb": "Slco4c1; Oatp4c1; Slc21a20", "gene_names_refseq": "Oatp-H; Oatp-M1; Oatp4c1; Slc21A20; Slco4c1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GVENPAFVPSSPDTPRRASA", "down_seq": "PSQVEVSAVASRNQNGGSQP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" } ], "site_lbl": "Ser26" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "28", "end_pos": "28" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q71MB6-1.15.15", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q71MB6-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q71MB6-1.19.19", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q71MB6-1.24.24", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q71MB6-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q71MB6-1.28.28", "start_pos": 28, "end_pos": 28, "uniprot_canonical_ac": "Q71MB6-1", "length": 724, "uniprot_id": "SO4C1_RAT", "protein_name": "Solute carrier organic anion transporter family member 4C1", "refseq_ac": "NP_001002024", "refseq_name": "solute carrier organic anion transporter family member 4C1", "gene_name": "Slco4c1", "gene_names_uniprotkb": "Slco4c1; Oatp4c1; Slc21a20", "gene_names_refseq": "Oatp-H; Oatp-M1; Oatp4c1; Slc21A20; Slco4c1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ENPAFVPSSPDTPRRASASP", "down_seq": "QVEVSAVASRNQNGGSQPRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q71MB6", "url": "https://www.uniprot.org/uniprotkb/Q71MB6" } ], "site_lbl": "Ser28" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "24", "end_pos": "24" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "28", "end_pos": "28" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q71MB6-1.15.15", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q71MB6-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q71MB6-1.19.19", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q71MB6-1.24.24", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q71MB6-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JHS2-1.426.426", "start_pos": 426, "end_pos": 426, "uniprot_canonical_ac": "Q9JHS2-1", "length": 662, "uniprot_id": "HIF3A_RAT", "protein_name": "Hypoxia-inducible factor 3-alpha", "refseq_ac": "NP_071973", "refseq_name": "hypoxia-inducible factor 3-alpha isoform 1", "gene_name": "Hif3a", "gene_names_uniprotkb": "Hif3a", "gene_names_refseq": "Hif3a; Ipas; Mop7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHS2", "url": "https://www.uniprot.org/uniprotkb/Q9JHS2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CSPDLRRLMAPILDGPPTAA", "down_seq": "PSTPQAARRPQSPLPADLPD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr426", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "556", "end_pos": "556" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JHS2-1.556.556", "start_pos": 556, "end_pos": 556, "uniprot_canonical_ac": "Q9JHS2-1", "length": 662, "uniprot_id": "HIF3A_RAT", "protein_name": "Hypoxia-inducible factor 3-alpha", "refseq_ac": "NP_071973", "refseq_name": "hypoxia-inducible factor 3-alpha isoform 1", "gene_name": "Hif3a", "gene_names_uniprotkb": "Hif3a", "gene_names_refseq": "Hif3a; Ipas; Mop7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHS2", "url": "https://www.uniprot.org/uniprotkb/Q9JHS2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PRWGSDPRLNCSSPSKGDPP", "down_seq": "APLTPRTRKRALAQSSEDKG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr556", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "426", "end_pos": "426" }, { "start_pos": "556", "end_pos": "556" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6T393-1.5.5", "start_pos": 5, "end_pos": 5, "uniprot_canonical_ac": "Q6T393-1", "length": 789, "uniprot_id": "SPT20_RAT", "protein_name": "Spermatogenesis-associated protein 20", "refseq_ac": "NP_955434", "refseq_name": "spermatogenesis-associated protein 20", "gene_name": "Spata20", "gene_names_uniprotkb": "Spata20", "gene_names_refseq": "Spata20; Ssp411", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6T393", "url": "https://www.uniprot.org/uniprotkb/Q6T393" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6T393", "url": "https://www.uniprot.org/uniprotkb/Q6T393" }, { "database": "iPTMnet", "id": "Q6T393", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6T393" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6T393", "url": "https://www.uniprot.org/uniprotkb/Q6T393", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6T393", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6T393", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSHH", "down_seq": "PPPPKHKGEHKGHGLPRGSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6T393", "url": "https://www.uniprot.org/uniprotkb/Q6T393" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6T393", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6T393" } ], "site_lbl": "Ser5" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "5", "end_pos": "5" }, { "start_pos": "652", "end_pos": "652" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6T393-1.652.652", "start_pos": 652, "end_pos": 652, "uniprot_canonical_ac": "Q6T393-1", "length": 789, "uniprot_id": "SPT20_RAT", "protein_name": "Spermatogenesis-associated protein 20", "refseq_ac": "NP_955434", "refseq_name": "spermatogenesis-associated protein 20", "gene_name": "Spata20", "gene_names_uniprotkb": "Spata20", "gene_names_refseq": "Spata20; Ssp411", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6T393", "url": "https://www.uniprot.org/uniprotkb/Q6T393" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6T393", "url": "https://www.uniprot.org/uniprotkb/Q6T393" }, { "database": "iPTMnet", "id": "Q6T393", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6T393" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6T393", "url": "https://www.uniprot.org/uniprotkb/Q6T393", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6T393", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6T393", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DLPLRLKDDQDGAEPSANSV", "down_seq": "AHNLLRLHGLTGHKDWMDKC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6T393", "url": "https://www.uniprot.org/uniprotkb/Q6T393" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6T393", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6T393" } ], "site_lbl": "Ser652" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "5", "end_pos": "5" }, { "start_pos": "652", "end_pos": "652" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5JCS6-1.1637.1637", "start_pos": 1637, "end_pos": 1637, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DLQHGQELEGAPELSLCVDP", "down_seq": "SGKEFMDTPGERSPSTLTGK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1637", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5JCS6-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TLNTSSLSEGGGGGGGPANG", "down_seq": "PAVPKMGVRARVSEWPPKKD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr69", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5JCS6-1.1030.1030", "start_pos": 1030, "end_pos": 1030, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DLLRTSVTVKVVIIQPHEDG", "down_seq": "PRRGCSELCRIPMVEYKLDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "site_lbl": "Ser1030" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5JCS6-1.1245.1245", "start_pos": 1245, "end_pos": 1245, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" }, { "database": "iPTMnet", "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSNTLSSNTSSNSDDKHFG", "down_seq": "GDLMDPELLGLTYIKGASTD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6" } ], "site_lbl": "Ser1245" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5JCS6-1.1461.1461", "start_pos": 1461, "end_pos": 1461, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" }, { "database": "iPTMnet", "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VPEAQHVLSKDDFLKLMLPD", "down_seq": "PLVEEGRRKFSFYGNLSPRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6" } ], "site_lbl": "Ser1461" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q5JCS6-1.1472.1472", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q5JCS6-1.1478.1478", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5JCS6-1.1472.1472", "start_pos": 1472, "end_pos": 1472, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DFLKLMLPDSPLVEEGRRKF", "down_seq": "FYGNLSPRRSLYRTLSDESV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "site_lbl": "Ser1472" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q5JCS6-1.1461.1461", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q5JCS6-1.1478.1478", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q5JCS6-1.1488.1488", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5JCS6-1.1478.1478", "start_pos": 1478, "end_pos": 1478, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" }, { "database": "iPTMnet", "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPDSPLVEEGRRKFSFYGNL", "down_seq": "PRRSLYRTLSDESVCSNRRG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6" } ], "site_lbl": "Ser1478" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q5JCS6-1.1461.1461", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q5JCS6-1.1472.1472", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q5JCS6-1.1488.1488", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5JCS6-1.1488.1488", "start_pos": 1488, "end_pos": 1488, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" }, { "database": "iPTMnet", "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRKFSFYGNLSPRRSLYRTL", "down_seq": "DESVCSNRRGSSFASSRSSI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6" } ], "site_lbl": "Ser1488" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q5JCS6-1.1472.1472", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q5JCS6-1.1478.1478", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5JCS6-1.149.149", "start_pos": 149, "end_pos": 149, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" }, { "database": "iPTMnet", "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EQLDLDFVEAKYTIGDIFVH", "down_seq": "PQRGLHPIRQRSNSDITISD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6" } ], "site_lbl": "Ser149" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5JCS6-1.1549.1549", "start_pos": 1549, "end_pos": 1549, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" }, { "database": "iPTMnet", "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPPRTHPAPSMGSLRNEFWF", "down_seq": "DGSLSDKSKCADPGLMPLPD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5JCS6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5JCS6" } ], "site_lbl": "Ser1549" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q5JCS6-1.1552.1552", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5JCS6-1.1552.1552", "start_pos": 1552, "end_pos": 1552, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RTHPAPSMGSLRNEFWFSDG", "down_seq": "LSDKSKCADPGLMPLPDTAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "site_lbl": "Ser1552" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q5JCS6-1.1549.1549", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5JCS6-1.1591.1591", "start_pos": 1591, "end_pos": 1591, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAGLDWSHLVDAARAFEGLD", "down_seq": "DEELGLLCHHASYLDQRVAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "site_lbl": "Ser1591" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5JCS6-1.380.380", "start_pos": 380, "end_pos": 380, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TGASAASQTPVPVGPAGGCE", "down_seq": "PLGSKEDLNAKENPDADEGD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "site_lbl": "Ser380" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q5JCS6-1.384.384", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5JCS6-1.384.384", "start_pos": 384, "end_pos": 384, "uniprot_canonical_ac": "Q5JCS6-1", "length": 1722, "uniprot_id": "SI1L2_RAT", "protein_name": "Signal-induced proliferation-associated 1-like protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Sipa1l2", "gene_names_uniprotkb": "Sipa1l2; Sersap2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AASQTPVPVGPAGGCESPLG", "down_seq": "KEDLNAKENPDADEGDGKSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5JCS6", "url": "https://www.uniprot.org/uniprotkb/Q5JCS6" } ], "site_lbl": "Ser384" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1637", "end_pos": "1637" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1030", "end_pos": "1030" }, { "start_pos": "1245", "end_pos": "1245" }, { "start_pos": "1461", "end_pos": "1461" }, { "start_pos": "1472", "end_pos": "1472" }, { "start_pos": "1478", "end_pos": "1478" }, { "start_pos": "1488", "end_pos": "1488" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "1549", "end_pos": "1549" }, { "start_pos": "1552", "end_pos": "1552" }, { "start_pos": "1591", "end_pos": "1591" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "384", "end_pos": "384" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q5JCS6-1.380.380", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08815-1.386.386", "start_pos": 386, "end_pos": 386, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RTEHNTSGDKFSNKVLSEKP", "down_seq": "PEGPEKTVDVDGPANDVNLE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr386", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O08815-1.372.372", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08815-1.1065.1065", "start_pos": 1065, "end_pos": 1065, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SEAKTRMAMFKKSLRINSTA", "down_seq": "PDQDREKIKQFAAQEEKRQK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "site_lbl": "Thr1065" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08815-1.14.14", "start_pos": 14, "end_pos": 14, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSFFNFRKIFKLG", "down_seq": "EKKKKQYEHVKRDLNPEEFW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "site_lbl": "Ser14" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08815-1.183.183", "start_pos": 183, "end_pos": 183, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Regulation of Ste20-like kinase, SLK, activity: Dimerization and activation segment phosphorylation.", "journal": "PloS one", "date": "2017", "authors": "Cybulsky AV, Guillemette J, Papillon J, Abouelazm NT", "evidence": [ { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "reference": [ { "type": "PubMed", "id": "28475647", "url": "https://glygen.org/publication/PubMed/28475647" } ] } ], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28475647", "url": "https://glygen.org/publication/PubMed/28475647", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FTLDGDIKLADFGVSAKNTR", "down_seq": "IQRRDSFIGTPYWMAPEVVM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" }, { "database": "PubMed", "id": "28475647", "url": "https://glygen.org/publication/PubMed/28475647" } ], "site_lbl": "Thr183" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "O08815-1.189.189", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O08815-1.193.193", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08815-1.189.189", "start_pos": 189, "end_pos": 189, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Regulation of Ste20-like kinase, SLK, activity: Dimerization and activation segment phosphorylation.", "journal": "PloS one", "date": "2017", "authors": "Cybulsky AV, Guillemette J, Papillon J, Abouelazm NT", "evidence": [ { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "reference": [ { "type": "PubMed", "id": "28475647", "url": "https://glygen.org/publication/PubMed/28475647" } ] } ], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28475647", "url": "https://glygen.org/publication/PubMed/28475647", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IKLADFGVSAKNTRTIQRRD", "down_seq": "FIGTPYWMAPEVVMCETSKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" }, { "database": "PubMed", "id": "28475647", "url": "https://glygen.org/publication/PubMed/28475647" } ], "site_lbl": "Ser189" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O08815-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O08815-1.193.193", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08815-1.193.193", "start_pos": 193, "end_pos": 193, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Regulation of Ste20-like kinase, SLK, activity: Dimerization and activation segment phosphorylation.", "journal": "PloS one", "date": "2017", "authors": "Cybulsky AV, Guillemette J, Papillon J, Abouelazm NT", "evidence": [ { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "reference": [ { "type": "PubMed", "id": "28475647", "url": "https://glygen.org/publication/PubMed/28475647" } ] } ], "crossref": [ { "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28475647", "url": "https://glygen.org/publication/PubMed/28475647", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DFGVSAKNTRTIQRRDSFIG", "down_seq": "PYWMAPEVVMCETSKDRPYD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" }, { "database": "PubMed", "id": "28475647", "url": "https://glygen.org/publication/PubMed/28475647" } ], "site_lbl": "Thr193" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O08815-1.183.183", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O08815-1.189.189", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08815-1.340.340", "start_pos": 340, "end_pos": 340, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEDDDDETESALPIPANKRA", "down_seq": "SDLSIASSEEDKLSQNACIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "site_lbl": "Ser340" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O08815-1.341.341", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O08815-1.344.344", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O08815-1.347.347", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O08815-1.348.348", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O08815-1.354.354", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08815-1.341.341", "start_pos": 341, "end_pos": 341, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDDDDETESALPIPANKRAS", "down_seq": "DLSIASSEEDKLSQNACILE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "site_lbl": "Ser341" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O08815-1.340.340", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O08815-1.344.344", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O08815-1.347.347", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O08815-1.348.348", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O08815-1.354.354", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08815-1.344.344", "start_pos": 344, "end_pos": 344, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DDETESALPIPANKRASSDL", "down_seq": "IASSEEDKLSQNACILESVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "site_lbl": "Ser344" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O08815-1.340.340", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O08815-1.341.341", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O08815-1.347.347", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O08815-1.348.348", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O08815-1.354.354", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08815-1.347.347", "start_pos": 347, "end_pos": 347, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TESALPIPANKRASSDLSIA", "down_seq": "SEEDKLSQNACILESVSERT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "site_lbl": "Ser347" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O08815-1.340.340", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O08815-1.341.341", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O08815-1.344.344", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O08815-1.348.348", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O08815-1.354.354", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08815-1.348.348", "start_pos": 348, "end_pos": 348, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESALPIPANKRASSDLSIAS", "down_seq": "EEDKLSQNACILESVSERTE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "site_lbl": "Ser348" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O08815-1.340.340", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O08815-1.341.341", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O08815-1.344.344", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O08815-1.347.347", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O08815-1.354.354", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08815-1.354.354", "start_pos": 354, "end_pos": 354, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PANKRASSDLSIASSEEDKL", "down_seq": "QNACILESVSERTEHNTSGD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "site_lbl": "Ser354" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O08815-1.340.340", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O08815-1.341.341", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O08815-1.344.344", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O08815-1.347.347", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O08815-1.348.348", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O08815-1.372.372", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08815-1.372.372", "start_pos": 372, "end_pos": 372, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLSQNACILESVSERTEHNT", "down_seq": "GDKFSNKVLSEKPTPEGPEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "site_lbl": "Ser372" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O08815-1.354.354", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O08815-1.386.386", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08815-1.545.545", "start_pos": 545, "end_pos": 545, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TQEKLGKDDKTHKVVISDIT", "down_seq": "EVGTDEPPGDTQKSAEQSQD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "site_lbl": "Ser545" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "O08815-1.563.563", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08815-1.563.563", "start_pos": 563, "end_pos": 563, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ITSEVGTDEPPGDTQKSAEQ", "down_seq": "QDAEGGAGEEAPEPAQTLTE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "site_lbl": "Ser563" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O08815-1.545.545", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08815-1.645.645", "start_pos": 645, "end_pos": 645, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TSESTRATTEEPETDEVDQV", "down_seq": "ESNSIEELERLGVTGAEEQA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "site_lbl": "Ser645" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O08815-1.649.649", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08815-1.649.649", "start_pos": 649, "end_pos": 649, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TRATTEEPETDEVDQVSESN", "down_seq": "IEELERLGVTGAEEQALGSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "site_lbl": "Ser649" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O08815-1.645.645", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O08815-1.668.668", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08815-1.668.668", "start_pos": 668, "end_pos": 668, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NSIEELERLGVTGAEEQALG", "down_seq": "KGEAATELDLEREENAQELP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "site_lbl": "Ser668" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O08815-1.649.649", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08815-1.776.776", "start_pos": 776, "end_pos": 776, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ENSSSDLNLSISSFLSKTKD", "down_seq": "GSVSLQETRRQKKTLKKTRK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "site_lbl": "Ser776" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O08815-1.778.778", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08815-1.778.778", "start_pos": 778, "end_pos": 778, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSDLNLSISSFLSKTKDSG", "down_seq": "VSLQETRRQKKTLKKTRKFI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O08815", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08815" } ], "site_lbl": "Ser778" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O08815-1.776.776", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08815-1.813.813", "start_pos": 813, "end_pos": 813, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KTRKFIVDGVEVSVTTSKIV", "down_seq": "DSDSKTEELRFLRRQELREL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "site_lbl": "Thr813" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O08815-1.817.817", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08815-1.817.817", "start_pos": 817, "end_pos": 817, "uniprot_canonical_ac": "O08815-1", "length": 1206, "uniprot_id": "SLK_RAT", "protein_name": "STE20-like serine/threonine-protein kinase", "refseq_ac": "NP_062222", "refseq_name": "STE20-like serine/threonine-protein kinase", "gene_name": "Slk", "gene_names_uniprotkb": "Slk; Sk2", "gene_names_refseq": "SK2; Slk; Stk2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FIVDGVEVSVTTSKIVTDSD", "down_seq": "KTEELRFLRRQELRELRLLQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08815", "url": "https://www.uniprot.org/uniprotkb/O08815" } ], "site_lbl": "Ser817" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "386", "end_pos": "386" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1065", "end_pos": "1065" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "645", "end_pos": "645" }, { "start_pos": "649", "end_pos": "649" }, { "start_pos": "668", "end_pos": "668" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "813", "end_pos": "813" }, { "start_pos": "817", "end_pos": "817" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O08815-1.813.813", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.399.399", "start_pos": 399, "end_pos": 399, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KLLEGEEERLKLSPSPSSRV", "down_seq": "VSRASSSRSVRTTRGKRKRV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr399", "evidence": [ { "id": "P70615", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P70615#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P70615-1.393.393", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.126.126", "start_pos": 126, "end_pos": 126, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" }, { "database": "iPTMnet", "id": "P70615", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70615" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P70615", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70615", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELGKFKAEHDQLLLNYAKKE", "down_seq": "DLSGAQIKLREYEAALNSKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P70615", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70615" } ], "site_lbl": "Ser126" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P70615-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" }, { "database": "iPTMnet", "id": "P70615", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70615" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P70615", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70615", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YEAALNSKDAALATALGDKK", "down_seq": "LEGDLEDLKDQIAQLEASLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P70615", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70615" } ], "site_lbl": "Ser158" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P70615-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MATATPVQQRAGSRA", "down_seq": "APATPFSPTRLSRLQEKEEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P70615-1.3.3", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P70615-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P70615-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P70615-1.23.23", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P70615-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P70615-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.200.200", "start_pos": 200, "end_pos": 200, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKKQLADETLLKVDLENRCQ", "down_seq": "LTEDLEFRKNMYEEEINETR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Ser200" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.20.20", "start_pos": 20, "end_pos": 20, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "", "down_seq": "PFSPTRLSRLQEKEELRELN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Thr20" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P70615-1.3.3", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P70615-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P70615-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P70615-1.23.23", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P70615-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P70615-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YEEEINETRRKHETRLVEVD", "down_seq": "GRQIEYEYKLAQALHEMREQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Ser232" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.23.23", "start_pos": 23, "end_pos": 23, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TATPVQQRAGSRASAPATPF", "down_seq": "PTRLSRLQEKEELRELNDRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Ser23" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P70615-1.3.3", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "P70615-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P70615-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P70615-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P70615-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P70615-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TPVQQRAGSRASAPATPFSP", "down_seq": "RLSRLQEKEELRELNDRLAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Thr25" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P70615-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P70615-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P70615-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P70615-1.23.23", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P70615-1.28.28", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.278.278", "start_pos": 278, "end_pos": 278, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RLYKEELEQTYHAKLENARL", "down_seq": "SEMNTSTVNSARGGMMESRM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Ser278" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.28.28", "start_pos": 28, "end_pos": 28, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQRAGSRASAPATPFSPTRL", "down_seq": "RLQEKEELRELNDRLAVYID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Ser28" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P70615-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P70615-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P70615-1.23.23", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P70615-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.302.302", "start_pos": 302, "end_pos": 302, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NTSTVNSARGGMMESRMRIE", "down_seq": "LSSQLSNLQKDSRACLERIQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Ser302" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.375.375", "start_pos": 375, "end_pos": 375, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQLNDYEQLLDVKLALDMEI", "down_seq": "AYRKLLEGEEERLKLSPSPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Ser375" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "P70615-1.393.393", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.393.393", "start_pos": 393, "end_pos": 393, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EISAYRKLLEGEEERLKLSP", "down_seq": "PSSRVTVSRASSSRSVRTTR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Ser393" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P70615-1.375.375", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P70615-1.399.399", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MA", "down_seq": "ATPVQQRAGSRASAPATPFS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Thr3" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P70615-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P70615-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P70615-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P70615-1.23.23", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.534.534", "start_pos": 534, "end_pos": 534, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IWKNQNSWGTGEDVKVVLKN", "down_seq": "QGEEVAQRSTVFKTTIPEEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Ser534" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70615-1.576.576", "start_pos": 576, "end_pos": 576, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" }, { "database": "iPTMnet", "id": "P70615", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70615" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P70615", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70615", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EEEEEPIGVPLEEERFHQQG", "down_seq": "PRASNKSCAIM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P70615", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70615" } ], "site_lbl": "Thr576" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P70615-1.5.5", "start_pos": 5, "end_pos": 5, "uniprot_canonical_ac": "P70615-1", "length": 587, "uniprot_id": "LMNB1_RAT", "protein_name": "Lamin-B1", "refseq_ac": "NP_446357", "refseq_name": "lamin-B1", "gene_name": "Lmnb1", "gene_names_uniprotkb": "Lmnb1", "gene_names_refseq": "Lmnb1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MATA", "down_seq": "PVQQRAGSRASAPATPFSPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P70615", "url": "https://www.uniprot.org/uniprotkb/P70615" } ], "site_lbl": "Thr5" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "399", "end_pos": "399" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P70615-1.3.3", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P70615-1.16.16", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P70615-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P70615-1.23.23", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P70615-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O55034-1.344.344", "start_pos": 344, "end_pos": 344, "uniprot_canonical_ac": "O55034-1", "length": 444, "uniprot_id": "SPAG4_RAT", "protein_name": "Sperm-associated antigen 4 protein", "refseq_ac": "NP_113980", "refseq_name": "sperm-associated antigen 4 protein", "gene_name": "Spag4", "gene_names_uniprotkb": "Spag4; Sun4", "gene_names_refseq": "Spag4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O55034", "url": "https://www.uniprot.org/uniprotkb/O55034" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VIRLPGHVQLSDITLQHPPP", "down_seq": "VAHTGGASSAPRDFAVFGLQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr344", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "344", "end_pos": "344" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54980-1.185.185", "start_pos": 185, "end_pos": 185, "uniprot_canonical_ac": "O54980-1", "length": 224, "uniprot_id": "SNG2_RAT", "protein_name": "Synaptogyrin-2", "refseq_ac": "NP_446005", "refseq_name": "synaptogyrin-2", "gene_name": "Syngr2", "gene_names_uniprotkb": "Syngr2", "gene_names_refseq": "Syngr2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54980", "url": "https://www.uniprot.org/uniprotkb/O54980" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LAYQRYKAGVDAFIQNYVDP", "down_seq": "PDPTTAYASYPSASVENYQQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr185", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "185", "end_pos": "185" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "15", "end_pos": "17" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54980-1.15.17", "start_pos": 15, "end_pos": 17, "uniprot_canonical_ac": "O54980-1", "length": 224, "uniprot_id": "SNG2_RAT", "protein_name": "Synaptogyrin-2", "refseq_ac": "NP_446005", "refseq_name": "synaptogyrin-2", "gene_name": "Syngr2", "gene_names_uniprotkb": "Syngr2", "gene_names_refseq": "Syngr2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54980", "url": "https://www.uniprot.org/uniprotkb/O54980" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Alternative routes to the cell surface underpin insulin-regulated membrane trafficking of GLUT4.", "journal": "Journal of cell science", "date": "2015", "authors": "Kioumourtzoglou D, Pryor PR, Gould GW, Bryant NJ", "evidence": [ { "database": "UniProtKB", "id": "O54980", "url": "https://www.uniprot.org/uniprotkb/O54980" } ], "reference": [ { "type": "PubMed", "id": "26071524", "url": "https://glygen.org/publication/PubMed/26071524" } ] } ], "crossref": [ { "id": "O54980", "url": "https://www.uniprot.org/uniprotkb/O54980", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26071524", "url": "https://glygen.org/publication/PubMed/26071524", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "FDL", "start_aa": "F", "up_seq": "MESGAYGAANAGGS", "down_seq": "RRYVSQPQVVTRLVSMVLAL", "mutagenesis": [ { "sequence_org": "FDL", "sequence_mut": "AAA", "comment": "Increased localization to the plasma membrane.", "evidence": [ { "database": "UniProtKB", "id": "O54980", "url": "https://www.uniprot.org/uniprotkb/O54980" }, { "database": "PubMed", "id": "26071524", "url": "https://glygen.org/publication/PubMed/26071524" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "185", "end_pos": "185" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "15", "end_pos": "17" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O54980-1.3.3", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O54980-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "O54980-1", "length": 224, "uniprot_id": "SNG2_RAT", "protein_name": "Synaptogyrin-2", "refseq_ac": "NP_446005", "refseq_name": "synaptogyrin-2", "gene_name": "Syngr2", "gene_names_uniprotkb": "Syngr2", "gene_names_refseq": "Syngr2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54980", "url": "https://www.uniprot.org/uniprotkb/O54980" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54980", "url": "https://www.uniprot.org/uniprotkb/O54980", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ME", "down_seq": "GAYGAANAGGSFDLRRYVSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O54980", "url": "https://www.uniprot.org/uniprotkb/O54980" } ], "site_lbl": "Ser3" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "185", "end_pos": "185" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "15", "end_pos": "17" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "O54980-1.15.17", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08651-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "O08651-1", "length": 533, "uniprot_id": "SERA_RAT", "protein_name": "D-3-phosphoglycerate dehydrogenase", "refseq_ac": "NP_113808", "refseq_name": "D-3-phosphoglycerate dehydrogenase", "gene_name": "Phgdh", "gene_names_uniprotkb": "Phgdh", "gene_names_refseq": "Phgdh", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08651", "url": "https://www.uniprot.org/uniprotkb/O08651" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "O08651", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O08651" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] } ], "crossref": [ { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O08651", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O08651", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "O08651", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O08651" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "O08651-1.14.14", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08651-1.14.14", "start_pos": 14, "end_pos": 14, "uniprot_canonical_ac": "O08651-1", "length": 533, "uniprot_id": "SERA_RAT", "protein_name": "D-3-phosphoglycerate dehydrogenase", "refseq_ac": "NP_113808", "refseq_name": "D-3-phosphoglycerate dehydrogenase", "gene_name": "Phgdh", "gene_names_uniprotkb": "Phgdh", "gene_names_refseq": "Phgdh", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08651", "url": "https://www.uniprot.org/uniprotkb/O08651" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08651", "url": "https://www.uniprot.org/uniprotkb/O08651", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAFANLRKILISD", "down_seq": "LDPCCRKILQDGGLQVVEKQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08651", "url": "https://www.uniprot.org/uniprotkb/O08651" } ], "site_lbl": "Ser14" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O08651-1.0.0", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08651-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "O08651-1", "length": 533, "uniprot_id": "SERA_RAT", "protein_name": "D-3-phosphoglycerate dehydrogenase", "refseq_ac": "NP_113808", "refseq_name": "D-3-phosphoglycerate dehydrogenase", "gene_name": "Phgdh", "gene_names_uniprotkb": "Phgdh", "gene_names_refseq": "Phgdh", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08651", "url": "https://www.uniprot.org/uniprotkb/O08651" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08651", "url": "https://www.uniprot.org/uniprotkb/O08651", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KVTADVINAAEKLQVVGRAG", "down_seq": "GVDNVDLEAATRKGVLVMNT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O08651", "url": "https://www.uniprot.org/uniprotkb/O08651" } ], "site_lbl": "Thr78" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35314-1.236.236", "start_pos": 236, "end_pos": 236, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AEAHFVELEKTHSREQSSQE", "down_seq": "GEETRRQEKPQELPDQDQSE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (Xyl...) (chondroitin sulfate) serine", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser236", "evidence": [ { "id": "O35314", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O35314#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "O35314-1.255.255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35314-1.93.93", "start_pos": 93, "end_pos": 93, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KGENENSKFEVRLLRDPSDA", "down_seq": "VGRWASSREETGAPVEDSPG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (Xyl...) (chondroitin sulfate) serine", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser93", "evidence": [ { "id": "O35314", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O35314#ptm_processing" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "site_lbl": "Ser93" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "O35314-1.99.99", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O35314-1.100.100", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35314-1.100.100", "start_pos": 100, "end_pos": 100, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KFEVRLLRDPSDASVGRWAS", "down_seq": "REETGAPVEDSPGQAKVDNE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "site_lbl": "Ser100" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O35314-1.93.93", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O35314-1.99.99", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35314-1.129.129", "start_pos": 129, "end_pos": 129, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDSPGQAKVDNEEWTGGGGH", "down_seq": "REAVDDQESLHPSNQQVSKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "site_lbl": "Ser129" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "O35314-1.147.147", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35314-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GHSREAVDDQESLHPSNQQV", "down_seq": "KEAKIRHSEERGGKEEEEEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "site_lbl": "Ser147" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O35314-1.129.129", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35314-1.190.190", "start_pos": 190, "end_pos": 190, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IYPKGEHRGDAGEEKKHTEE", "down_seq": "GEKHNAFSNKRSEASAKKKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "site_lbl": "Ser190" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35314-1.255.255", "start_pos": 255, "end_pos": 255, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESGEETRRQEKPQELPDQDQ", "down_seq": "EEESEEGEEGEEGATSEVTK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "site_lbl": "Ser255" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O35314-1.236.236", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O35314-1.259.259", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35314-1.259.259", "start_pos": 259, "end_pos": 259, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ETRRQEKPQELPDQDQSEEE", "down_seq": "EEGEEGEEGATSEVTKRRPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "site_lbl": "Ser259" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O35314-1.255.255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35314-1.291.291", "start_pos": 291, "end_pos": 291, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEVTKRRPRHHHWRSQSNKP", "down_seq": "YEGRRPLSEERKHAAGESKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "site_lbl": "Ser291" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "O35314-1.309.309", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35314-1.309.309", "start_pos": 309, "end_pos": 309, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KPSYEGRRPLSEERKHAAGE", "down_seq": "KDANVATANLGEKRGHHLAH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "site_lbl": "Ser309" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O35314-1.291.291", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35314-1.333.333", "start_pos": 333, "end_pos": 333, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NVATANLGEKRGHHLAHYRA", "down_seq": "EEEPDYGEELRSYPGFQAPQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "site_lbl": "Ser333" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35314-1.362.362", "start_pos": 362, "end_pos": 362, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELRSYPGFQAPQGLQYQGRG", "down_seq": "EEVRAPSPRSEESQEKEYKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "site_lbl": "Ser362" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "O35314-1.372.372", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O35314-1.375.375", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35314-1.372.372", "start_pos": 372, "end_pos": 372, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PQGLQYQGRGSEEVRAPSPR", "down_seq": "EESQEKEYKRNHPDSELEST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "site_lbl": "Ser372" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O35314-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O35314-1.375.375", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35314-1.375.375", "start_pos": 375, "end_pos": 375, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LQYQGRGSEEVRAPSPRSEE", "down_seq": "QEKEYKRNHPDSELESTANR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "site_lbl": "Ser375" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O35314-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O35314-1.372.372", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35314-1.397.397", "start_pos": 397, "end_pos": 397, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKEYKRNHPDSELESTANRH", "down_seq": "EETEEERSYEGAKGRQHRGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "site_lbl": "Ser397" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35314-1.490.490", "start_pos": 490, "end_pos": 490, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DEEGDQGRWWQQEEQLEPEE", "down_seq": "REEVSFPDRQYAPYPTTEKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "site_lbl": "Ser490" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35314-1.529.529", "start_pos": 529, "end_pos": 529, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRKRLGALFNPYFDPLQWKN", "down_seq": "DFEKKGNPDDSFLDDDGEDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "site_lbl": "Ser529" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "O35314-1.540.540", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35314-1.540.540", "start_pos": 540, "end_pos": 540, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YFDPLQWKNSDFEKKGNPDD", "down_seq": "FLDDDGEDGNGVTMTEKNFF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "site_lbl": "Ser540" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O35314-1.529.529", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35314-1.624.624", "start_pos": 624, "end_pos": 624, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "A sulfated, phosphorylated 7 kDa secreted peptide characterized by direct analysis of cell culture media.", "journal": "Journal of proteome research", "date": "2008", "authors": "Taylor SW, Sun C, Hsieh A, Andon NL, Ghosh SS", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "reference": [ { "type": "PubMed", "id": "18181560", "url": "https://glygen.org/publication/PubMed/18181560" } ] }, { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18181560", "url": "https://glygen.org/publication/PubMed/18181560", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELDQLLHYRKKAAEFPDFYD", "down_seq": "EEQMGPHQEAEDEKDRADQR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" }, { "database": "PubMed", "id": "18181560", "url": "https://glygen.org/publication/PubMed/18181560" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35314", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35314" } ], "site_lbl": "Ser624" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35314-1.99.99", "start_pos": 99, "end_pos": 99, "uniprot_canonical_ac": "O35314-1", "length": 675, "uniprot_id": "SCG1_RAT", "protein_name": "Secretogranin-1", "refseq_ac": "NP_036658", "refseq_name": "secretogranin-1 precursor", "gene_name": "Chgb", "gene_names_uniprotkb": "Chgb", "gene_names_refseq": "Chgb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKFEVRLLRDPSDASVGRWA", "down_seq": "SREETGAPVEDSPGQAKVDN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35314", "url": "https://www.uniprot.org/uniprotkb/O35314" } ], "site_lbl": "Ser99" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "236", "end_pos": "236" }, { "start_pos": "93", "end_pos": "93" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "100", "end_pos": "100" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "255", "end_pos": "255" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "624", "end_pos": "624" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "99", "end_pos": "99" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O35314-1.93.93", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O35314-1.100.100", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70593-1.213.213", "start_pos": 213, "end_pos": 213, "uniprot_canonical_ac": "O70593-1", "length": 314, "uniprot_id": "SGTA_RAT", "protein_name": "Small glutamine-rich tetratricopeptide repeat-containing protein alpha", "refseq_ac": "NP_073194", "refseq_name": "small glutamine-rich tetratricopeptide repeat-containing protein alpha", "gene_name": "Sgta", "gene_names_uniprotkb": "Sgta; Sgt1; Sgt; Stg", "gene_names_refseq": "Sgta; Stg", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DTYKSNLKIAELKLREAPSP", "down_seq": "GGVGSLDIAGLLNNPHFITM", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr213", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "260", "end_pos": "260" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70593-1.260.260", "start_pos": 260, "end_pos": 260, "uniprot_canonical_ac": "O70593-1", "length": 314, "uniprot_id": "SGTA_RAT", "protein_name": "Small glutamine-rich tetratricopeptide repeat-containing protein alpha", "refseq_ac": "NP_073194", "refseq_name": "small glutamine-rich tetratricopeptide repeat-containing protein alpha", "gene_name": "Sgta", "gene_names_uniprotkb": "Sgta; Sgt1; Sgt; Stg", "gene_names_refseq": "Sgta; Stg", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SPQLQQLMSGMISGGHNPLG", "down_seq": "PGSSPQHSDLASLIQAGQQF", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr260", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "260", "end_pos": "260" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70593-1.302.302", "start_pos": 302, "end_pos": 302, "uniprot_canonical_ac": "O70593-1", "length": 314, "uniprot_id": "SGTA_RAT", "protein_name": "Small glutamine-rich tetratricopeptide repeat-containing protein alpha", "refseq_ac": "NP_073194", "refseq_name": "small glutamine-rich tetratricopeptide repeat-containing protein alpha", "gene_name": "Sgta", "gene_names_uniprotkb": "Sgta; Sgt1; Sgt; Stg", "gene_names_refseq": "Sgta; Stg", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQMQQQNPEFVEQIRSQVVR", "down_seq": "RTPSASHEEQQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" } ], "site_lbl": "Ser302" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "260", "end_pos": "260" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O70593-1.304.304", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O70593-1.306.306", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70593-1.304.304", "start_pos": 304, "end_pos": 304, "uniprot_canonical_ac": "O70593-1", "length": 314, "uniprot_id": "SGTA_RAT", "protein_name": "Small glutamine-rich tetratricopeptide repeat-containing protein alpha", "refseq_ac": "NP_073194", "refseq_name": "small glutamine-rich tetratricopeptide repeat-containing protein alpha", "gene_name": "Sgta", "gene_names_uniprotkb": "Sgta; Sgt1; Sgt; Stg", "gene_names_refseq": "Sgta; Stg", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MQQQNPEFVEQIRSQVVRSR", "down_seq": "PSASHEEQQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" } ], "site_lbl": "Thr304" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "260", "end_pos": "260" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O70593-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O70593-1.306.306", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70593-1.306.306", "start_pos": 306, "end_pos": 306, "uniprot_canonical_ac": "O70593-1", "length": 314, "uniprot_id": "SGTA_RAT", "protein_name": "Small glutamine-rich tetratricopeptide repeat-containing protein alpha", "refseq_ac": "NP_073194", "refseq_name": "small glutamine-rich tetratricopeptide repeat-containing protein alpha", "gene_name": "Sgta", "gene_names_uniprotkb": "Sgta; Sgt1; Sgt; Stg", "gene_names_refseq": "Sgta; Stg", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQNPEFVEQIRSQVVRSRTP", "down_seq": "ASHEEQQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" } ], "site_lbl": "Ser306" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "260", "end_pos": "260" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O70593-1.302.302", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O70593-1.304.304", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70593-1.81.81", "start_pos": 81, "end_pos": 81, "uniprot_canonical_ac": "O70593-1", "length": 314, "uniprot_id": "SGTA_RAT", "protein_name": "Small glutamine-rich tetratricopeptide repeat-containing protein alpha", "refseq_ac": "NP_073194", "refseq_name": "small glutamine-rich tetratricopeptide repeat-containing protein alpha", "gene_name": "Sgta", "gene_names_uniprotkb": "Sgta; Sgt1; Sgt; Stg", "gene_names_refseq": "Sgta; Stg", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" }, { "database": "iPTMnet", "id": "O70593", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70593" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] }, { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" }, { "database": "iPTMnet", "id": "O70593", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70593" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O70593", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70593", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IFEAATASKEMPQDPRGPDR", "down_seq": "PPSEEDSAEAERLKTEGNEQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O70593", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70593" } ], "site_lbl": "Thr81" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "260", "end_pos": "260" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O70593-1.84.84", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70593-1.84.84", "start_pos": 84, "end_pos": 84, "uniprot_canonical_ac": "O70593-1", "length": 314, "uniprot_id": "SGTA_RAT", "protein_name": "Small glutamine-rich tetratricopeptide repeat-containing protein alpha", "refseq_ac": "NP_073194", "refseq_name": "small glutamine-rich tetratricopeptide repeat-containing protein alpha", "gene_name": "Sgta", "gene_names_uniprotkb": "Sgta; Sgt1; Sgt; Stg", "gene_names_refseq": "Sgta; Stg", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" }, { "database": "iPTMnet", "id": "O70593", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70593" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O70593", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70593", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AATASKEMPQDPRGPDRTPP", "down_seq": "EEDSAEAERLKTEGNEQMKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70593", "url": "https://www.uniprot.org/uniprotkb/O70593" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O70593", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70593" } ], "site_lbl": "Ser84" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "213", "end_pos": "213" }, { "start_pos": "260", "end_pos": "260" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "302", "end_pos": "302" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O70593-1.81.81", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P02634-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "P02634-1", "length": 79, "uniprot_id": "S100G_RAT", "protein_name": "Protein S100-G", "refseq_ac": "NP_036653", "refseq_name": "protein S100-G", "gene_name": "S100g", "gene_names_uniprotkb": "S100g; Calb3; S100d", "gene_names_refseq": "Cabp; Calb3; Cbpi; Rncalbd9; S100g", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P02634", "url": "https://www.uniprot.org/uniprotkb/P02634" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P02634", "url": "https://www.uniprot.org/uniprotkb/P02634" }, { "database": "iPTMnet", "id": "P02634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P02634" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P02634", "url": "https://www.uniprot.org/uniprotkb/P02634", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P02634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P02634", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GDPNQLSKEELKLLIQSEFP", "down_seq": "LLKASSTLDNLFKELDKNGD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P02634", "url": "https://www.uniprot.org/uniprotkb/P02634" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P02634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P02634" } ], "site_lbl": "Ser42" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "42", "end_pos": "42" }, { "start_pos": "47", "end_pos": "47" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P02634-1.47.47", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P02634-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "P02634-1", "length": 79, "uniprot_id": "S100G_RAT", "protein_name": "Protein S100-G", "refseq_ac": "NP_036653", "refseq_name": "protein S100-G", "gene_name": "S100g", "gene_names_uniprotkb": "S100g; Calb3; S100d", "gene_names_refseq": "Cabp; Calb3; Cbpi; Rncalbd9; S100g", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P02634", "url": "https://www.uniprot.org/uniprotkb/P02634" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P02634", "url": "https://www.uniprot.org/uniprotkb/P02634" }, { "database": "iPTMnet", "id": "P02634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P02634" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P02634", "url": "https://www.uniprot.org/uniprotkb/P02634", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P02634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P02634", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSKEELKLLIQSEFPSLLKA", "down_seq": "STLDNLFKELDKNGDGEVSY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P02634", "url": "https://www.uniprot.org/uniprotkb/P02634" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P02634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P02634" } ], "site_lbl": "Ser47" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "42", "end_pos": "42" }, { "start_pos": "47", "end_pos": "47" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P02634-1.42.42", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M869-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "Q5M869-1", "length": 178, "uniprot_id": "SIT1_RAT", "protein_name": "Signaling threshold-regulating transmembrane adapter 1", "refseq_ac": "NP_001019515", "refseq_name": "signaling threshold-regulating transmembrane adapter 1", "gene_name": "Sit1", "gene_names_uniprotkb": "Sit1; Sit", "gene_names_refseq": "Sit1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "MSREN", "down_seq": "CTTADLAWGIPSITQAWGLW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn6", "evidence": [ { "id": "Q5M869", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5M869#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M869-1.109.109", "start_pos": 109, "end_pos": 109, "uniprot_canonical_ac": "Q5M869-1", "length": 178, "uniprot_id": "SIT1_RAT", "protein_name": "Signaling threshold-regulating transmembrane adapter 1", "refseq_ac": "NP_001019515", "refseq_name": "signaling threshold-regulating transmembrane adapter 1", "gene_name": "Sit1", "gene_names_uniprotkb": "Sit1; Sit", "gene_names_refseq": "Sit1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "SEEQDPSSGGLARGAEEATC", "down_seq": "TSLQLRPAQGRIPSSGTPIK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "site_lbl": "Tyr109" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q5M869-1.89.89", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q5M869-1.126.126", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M869-1.126.126", "start_pos": 126, "end_pos": 126, "uniprot_canonical_ac": "Q5M869-1", "length": 178, "uniprot_id": "SIT1_RAT", "protein_name": "Signaling threshold-regulating transmembrane adapter 1", "refseq_ac": "NP_001019515", "refseq_name": "signaling threshold-regulating transmembrane adapter 1", "gene_name": "Sit1", "gene_names_uniprotkb": "Sit1; Sit", "gene_names_refseq": "Sit1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ATCYTSLQLRPAQGRIPSSG", "down_seq": "PIKYCEVVLDSEPKPQASGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "site_lbl": "Thr126" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q5M869-1.109.109", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q5M869-1.130.130", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M869-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "Q5M869-1", "length": 178, "uniprot_id": "SIT1_RAT", "protein_name": "Signaling threshold-regulating transmembrane adapter 1", "refseq_ac": "NP_001019515", "refseq_name": "signaling threshold-regulating transmembrane adapter 1", "gene_name": "Sit1", "gene_names_uniprotkb": "Sit1; Sit", "gene_names_refseq": "Sit1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TSLQLRPAQGRIPSSGTPIK", "down_seq": "CEVVLDSEPKPQASGPEPEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "site_lbl": "Tyr130" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q5M869-1.126.126", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M869-1.151.151", "start_pos": 151, "end_pos": 151, "uniprot_canonical_ac": "Q5M869-1", "length": 178, "uniprot_id": "SIT1_RAT", "protein_name": "Signaling threshold-regulating transmembrane adapter 1", "refseq_ac": "NP_001019515", "refseq_name": "signaling threshold-regulating transmembrane adapter 1", "gene_name": "Sit1", "gene_names_uniprotkb": "Sit1; Sit", "gene_names_refseq": "Sit1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "CEVVLDSEPKPQASGPEPEL", "down_seq": "ASVCAQTRRARASFPDQAYA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "site_lbl": "Tyr151" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q5M869-1.164.164", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q5M869-1.170.170", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M869-1.164.164", "start_pos": 164, "end_pos": 164, "uniprot_canonical_ac": "Q5M869-1", "length": 178, "uniprot_id": "SIT1_RAT", "protein_name": "Signaling threshold-regulating transmembrane adapter 1", "refseq_ac": "NP_001019515", "refseq_name": "signaling threshold-regulating transmembrane adapter 1", "gene_name": "Sit1", "gene_names_uniprotkb": "Sit1; Sit", "gene_names_refseq": "Sit1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" }, { "database": "iPTMnet", "id": "Q5M869", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M869" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M869", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M869", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGPEPELYASVCAQTRRARA", "down_seq": "FPDQAYANSQPAPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5M869", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M869" } ], "site_lbl": "Ser164" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q5M869-1.151.151", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q5M869-1.170.170", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M869-1.170.170", "start_pos": 170, "end_pos": 170, "uniprot_canonical_ac": "Q5M869-1", "length": 178, "uniprot_id": "SIT1_RAT", "protein_name": "Signaling threshold-regulating transmembrane adapter 1", "refseq_ac": "NP_001019515", "refseq_name": "signaling threshold-regulating transmembrane adapter 1", "gene_name": "Sit1", "gene_names_uniprotkb": "Sit1; Sit", "gene_names_refseq": "Sit1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LYASVCAQTRRARASFPDQA", "down_seq": "ANSQPAPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "site_lbl": "Tyr170" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q5M869-1.151.151", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q5M869-1.164.164", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M869-1.62.62", "start_pos": 62, "end_pos": 62, "uniprot_canonical_ac": "Q5M869-1", "length": 178, "uniprot_id": "SIT1_RAT", "protein_name": "Signaling threshold-regulating transmembrane adapter 1", "refseq_ac": "NP_001019515", "refseq_name": "signaling threshold-regulating transmembrane adapter 1", "gene_name": "Sit1", "gene_names_uniprotkb": "Sit1; Sit", "gene_names_refseq": "Sit1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ALLSQWTRGRRRTQEEQGPP", "down_seq": "GRSVEEVPLYGNLHYLQTGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "site_lbl": "Ser62" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q5M869-1.65.65", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q5M869-1.72.72", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M869-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "Q5M869-1", "length": 178, "uniprot_id": "SIT1_RAT", "protein_name": "Signaling threshold-regulating transmembrane adapter 1", "refseq_ac": "NP_001019515", "refseq_name": "signaling threshold-regulating transmembrane adapter 1", "gene_name": "Sit1", "gene_names_uniprotkb": "Sit1; Sit", "gene_names_refseq": "Sit1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" }, { "database": "iPTMnet", "id": "Q5M869", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M869" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M869", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M869", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SQWTRGRRRTQEEQGPPSGR", "down_seq": "VEEVPLYGNLHYLQTGRLSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5M869", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M869" } ], "site_lbl": "Ser65" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q5M869-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q5M869-1.72.72", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q5M869-1.84.84", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M869-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "Q5M869-1", "length": 178, "uniprot_id": "SIT1_RAT", "protein_name": "Signaling threshold-regulating transmembrane adapter 1", "refseq_ac": "NP_001019515", "refseq_name": "signaling threshold-regulating transmembrane adapter 1", "gene_name": "Sit1", "gene_names_uniprotkb": "Sit1; Sit", "gene_names_refseq": "Sit1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "RRTQEEQGPPSGRSVEEVPL", "down_seq": "GNLHYLQTGRLSEESRSEEQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "site_lbl": "Tyr72" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q5M869-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q5M869-1.65.65", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q5M869-1.84.84", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q5M869-1.87.87", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q5M869-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M869-1.84.84", "start_pos": 84, "end_pos": 84, "uniprot_canonical_ac": "Q5M869-1", "length": 178, "uniprot_id": "SIT1_RAT", "protein_name": "Signaling threshold-regulating transmembrane adapter 1", "refseq_ac": "NP_001019515", "refseq_name": "signaling threshold-regulating transmembrane adapter 1", "gene_name": "Sit1", "gene_names_uniprotkb": "Sit1; Sit", "gene_names_refseq": "Sit1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSVEEVPLYGNLHYLQTGRL", "down_seq": "EESRSEEQDPSSGGLARGAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "site_lbl": "Ser84" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q5M869-1.65.65", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q5M869-1.72.72", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q5M869-1.87.87", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q5M869-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M869-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "Q5M869-1", "length": 178, "uniprot_id": "SIT1_RAT", "protein_name": "Signaling threshold-regulating transmembrane adapter 1", "refseq_ac": "NP_001019515", "refseq_name": "signaling threshold-regulating transmembrane adapter 1", "gene_name": "Sit1", "gene_names_uniprotkb": "Sit1; Sit", "gene_names_refseq": "Sit1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" }, { "database": "iPTMnet", "id": "Q5M869", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M869" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M869", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M869", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEVPLYGNLHYLQTGRLSEE", "down_seq": "RSEEQDPSSGGLARGAEEAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5M869", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M869" } ], "site_lbl": "Ser87" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q5M869-1.72.72", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q5M869-1.84.84", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q5M869-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M869-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "Q5M869-1", "length": 178, "uniprot_id": "SIT1_RAT", "protein_name": "Signaling threshold-regulating transmembrane adapter 1", "refseq_ac": "NP_001019515", "refseq_name": "signaling threshold-regulating transmembrane adapter 1", "gene_name": "Sit1", "gene_names_uniprotkb": "Sit1; Sit", "gene_names_refseq": "Sit1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" }, { "database": "iPTMnet", "id": "Q5M869", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M869" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M869", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M869", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VPLYGNLHYLQTGRLSEESR", "down_seq": "EEQDPSSGGLARGAEEATCY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M869", "url": "https://www.uniprot.org/uniprotkb/Q5M869" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5M869", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M869" } ], "site_lbl": "Ser89" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "6", "end_pos": "6" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "126", "end_pos": "126" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q5M869-1.72.72", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q5M869-1.84.84", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q5M869-1.87.87", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q5M869-1.109.109", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M9G6-1.149.149", "start_pos": 149, "end_pos": 149, "uniprot_canonical_ac": "Q5M9G6-1", "length": 389, "uniprot_id": "SNIP1_RAT", "protein_name": "Smad nuclear interacting protein 1", "refseq_ac": "NP_001014091", "refseq_name": "smad nuclear interacting protein 1", "gene_name": "Snip1", "gene_names_uniprotkb": "Snip1", "gene_names_refseq": "Snip1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" }, { "database": "iPTMnet", "id": "Q5M9G6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M9G6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M9G6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M9G6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRARNSERDRHRGHARQRRS", "down_seq": "DERPVSGQGRDRDSQILQAQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5M9G6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M9G6" } ], "site_lbl": "Ser149" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M9G6-1.18.18", "start_pos": 18, "end_pos": 18, "uniprot_canonical_ac": "Q5M9G6-1", "length": 389, "uniprot_id": "SNIP1_RAT", "protein_name": "Smad nuclear interacting protein 1", "refseq_ac": "NP_001014091", "refseq_name": "smad nuclear interacting protein 1", "gene_name": "Snip1", "gene_names_uniprotkb": "Snip1", "gene_names_refseq": "Snip1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" }, { "database": "iPTMnet", "id": "Q5M9G6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M9G6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M9G6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M9G6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MKAGKSERERSSRRRHR", "down_seq": "GDALATVVVKQERLSPEPVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5M9G6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M9G6" } ], "site_lbl": "Ser18" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q5M9G6-1.33.33", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M9G6-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "Q5M9G6-1", "length": 389, "uniprot_id": "SNIP1_RAT", "protein_name": "Smad nuclear interacting protein 1", "refseq_ac": "NP_001014091", "refseq_name": "smad nuclear interacting protein 1", "gene_name": "Snip1", "gene_names_uniprotkb": "Snip1", "gene_names_refseq": "Snip1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRRHRSGDALATVVVKQERL", "down_seq": "PEPVAHRRPDAPAASPPPPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" } ], "site_lbl": "Ser33" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q5M9G6-1.18.18", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q5M9G6-1.48.48", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M9G6-1.386.386", "start_pos": 386, "end_pos": 386, "uniprot_canonical_ac": "Q5M9G6-1", "length": 389, "uniprot_id": "SNIP1_RAT", "protein_name": "Smad nuclear interacting protein 1", "refseq_ac": "NP_001014091", "refseq_name": "smad nuclear interacting protein 1", "gene_name": "Snip1", "gene_names_uniprotkb": "Snip1", "gene_names_refseq": "Snip1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DTSELDRKEDEDEEEEEEMV", "down_seq": "DSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" } ], "site_lbl": "Ser386" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M9G6-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "Q5M9G6-1", "length": 389, "uniprot_id": "SNIP1_RAT", "protein_name": "Smad nuclear interacting protein 1", "refseq_ac": "NP_001014091", "refseq_name": "smad nuclear interacting protein 1", "gene_name": "Snip1", "gene_names_uniprotkb": "Snip1", "gene_names_refseq": "Snip1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" }, { "database": "iPTMnet", "id": "Q5M9G6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M9G6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M9G6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M9G6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KQERLSPEPVAHRRPDAPAA", "down_seq": "PPPPAAESGSAGHRGSRARG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5M9G6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M9G6" } ], "site_lbl": "Ser48" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q5M9G6-1.33.33", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M9G6-1.95.95", "start_pos": 95, "end_pos": 95, "uniprot_canonical_ac": "Q5M9G6-1", "length": 389, "uniprot_id": "SNIP1_RAT", "protein_name": "Smad nuclear interacting protein 1", "refseq_ac": "NP_001014091", "refseq_name": "smad nuclear interacting protein 1", "gene_name": "Snip1", "gene_names_uniprotkb": "Snip1", "gene_names_refseq": "Snip1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" }, { "database": "iPTMnet", "id": "Q5M9G6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M9G6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M9G6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M9G6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKKSKSSGRRSKSPRTKRSR", "down_seq": "PHYSTVKVKQEREDHPRRGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5M9G6", "url": "https://www.uniprot.org/uniprotkb/Q5M9G6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5M9G6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M9G6" } ], "site_lbl": "Ser95" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "149", "end_pos": "149" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63553-1.613.613", "start_pos": 613, "end_pos": 613, "uniprot_canonical_ac": "Q63553-1", "length": 746, "uniprot_id": "SNRK_RAT", "protein_name": "SNF-related serine/threonine-protein kinase", "refseq_ac": "NP_620188", "refseq_name": "SNF-related serine/threonine-protein kinase", "gene_name": "Snrk", "gene_names_uniprotkb": "Snrk", "gene_names_refseq": "Snrk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DKASPGEQGTGGSGQGGSGG", "down_seq": "PSGTAGSSRRCAGPDSSSSS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr613", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "613", "end_pos": "613" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "518", "end_pos": "518" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63553-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "Q63553-1", "length": 746, "uniprot_id": "SNRK_RAT", "protein_name": "SNF-related serine/threonine-protein kinase", "refseq_ac": "NP_620188", "refseq_name": "SNF-related serine/threonine-protein kinase", "gene_name": "Snrk", "gene_names_uniprotkb": "Snrk", "gene_names_refseq": "Snrk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PENVVFFEKQGLVKLTDFGF", "down_seq": "NKFQPGKKLTTSCGSLAYSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" } ], "site_lbl": "Ser162" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "613", "end_pos": "613" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "518", "end_pos": "518" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q63553-1.173.173", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63553-1.173.173", "start_pos": 173, "end_pos": 173, "uniprot_canonical_ac": "Q63553-1", "length": 746, "uniprot_id": "SNRK_RAT", "protein_name": "SNF-related serine/threonine-protein kinase", "refseq_ac": "NP_620188", "refseq_name": "SNF-related serine/threonine-protein kinase", "gene_name": "Snrk", "gene_names_uniprotkb": "Snrk", "gene_names_refseq": "Snrk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LVKLTDFGFSNKFQPGKKLT", "down_seq": "SCGSLAYSAPEILLGDEYDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by LKB1", "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" } ], "site_lbl": "Thr173" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "613", "end_pos": "613" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "518", "end_pos": "518" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q63553-1.162.162", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63553-1.362.362", "start_pos": 362, "end_pos": 362, "uniprot_canonical_ac": "Q63553-1", "length": 746, "uniprot_id": "SNRK_RAT", "protein_name": "SNF-related serine/threonine-protein kinase", "refseq_ac": "NP_620188", "refseq_name": "SNF-related serine/threonine-protein kinase", "gene_name": "Snrk", "gene_names_uniprotkb": "Snrk", "gene_names_refseq": "Snrk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" }, { "database": "iPTMnet", "id": "Q63553", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63553" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63553", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63553", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKEIQTRSASPSNIKAQFRQ", "down_seq": "WPTKIDVPQDLEDDLTATPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63553", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63553" } ], "site_lbl": "Ser362" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "613", "end_pos": "613" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "518", "end_pos": "518" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63553-1.390.390", "start_pos": 390, "end_pos": 390, "uniprot_canonical_ac": "Q63553-1", "length": 746, "uniprot_id": "SNRK_RAT", "protein_name": "SNF-related serine/threonine-protein kinase", "refseq_ac": "NP_620188", "refseq_name": "SNF-related serine/threonine-protein kinase", "gene_name": "Snrk", "gene_names_uniprotkb": "Snrk", "gene_names_refseq": "Snrk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PQDLEDDLTATPLSHATVPQ", "down_seq": "PARAGDSVLNGHRSKGLCDP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" } ], "site_lbl": "Ser390" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "613", "end_pos": "613" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "518", "end_pos": "518" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63553-1.482.482", "start_pos": 482, "end_pos": 482, "uniprot_canonical_ac": "Q63553-1", "length": 746, "uniprot_id": "SNRK_RAT", "protein_name": "SNF-related serine/threonine-protein kinase", "refseq_ac": "NP_620188", "refseq_name": "SNF-related serine/threonine-protein kinase", "gene_name": "Snrk", "gene_names_uniprotkb": "Snrk", "gene_names_refseq": "Snrk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STQVVLRRKPSVTNRLTSRK", "down_seq": "APVLNQIFEEGESDDEFDMD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" } ], "site_lbl": "Ser482" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "613", "end_pos": "613" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "518", "end_pos": "518" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q63553-1.495.495", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63553-1.495.495", "start_pos": 495, "end_pos": 495, "uniprot_canonical_ac": "Q63553-1", "length": 746, "uniprot_id": "SNRK_RAT", "protein_name": "SNF-related serine/threonine-protein kinase", "refseq_ac": "NP_620188", "refseq_name": "SNF-related serine/threonine-protein kinase", "gene_name": "Snrk", "gene_names_uniprotkb": "Snrk", "gene_names_refseq": "Snrk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" }, { "database": "iPTMnet", "id": "Q63553", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63553" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63553", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63553", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NRLTSRKSAPVLNQIFEEGE", "down_seq": "DDEFDMDENLPPKLSRLKMN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63553", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63553" } ], "site_lbl": "Ser495" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "613", "end_pos": "613" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "518", "end_pos": "518" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q63553-1.482.482", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63553-1.518.518", "start_pos": 518, "end_pos": 518, "uniprot_canonical_ac": "Q63553-1", "length": 746, "uniprot_id": "SNRK_RAT", "protein_name": "SNF-related serine/threonine-protein kinase", "refseq_ac": "NP_620188", "refseq_name": "SNF-related serine/threonine-protein kinase", "gene_name": "Snrk", "gene_names_uniprotkb": "Snrk", "gene_names_refseq": "Snrk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" }, { "database": "iPTMnet", "id": "Q63553", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63553" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63553", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63553", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EFDMDENLPPKLSRLKMNIA", "down_seq": "PGTVHKRYHRRKSQGRGSSC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63553", "url": "https://www.uniprot.org/uniprotkb/Q63553" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63553", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63553" } ], "site_lbl": "Ser518" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "613", "end_pos": "613" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "482", "end_pos": "482" }, { "start_pos": "495", "end_pos": "495" }, { "start_pos": "518", "end_pos": "518" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.123.123", "start_pos": 123, "end_pos": 123, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERPTSQADLELDYNPPRVQL", "down_seq": "DEMFVFQDGRWVNESCRLQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser123" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q6AXV6-1.143.143", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SDEMFVFQDGRWVNESCRLQ", "down_seq": "PYFSPSSSFHHKLHHKRMAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser143" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q6AXV6-1.123.123", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6AXV6-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q6AXV6-1.149.149", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FVFQDGRWVNESCRLQSPYF", "down_seq": "PSSSFHHKLHHKRMAKEYLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser147" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q6AXV6-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q6AXV6-1.149.149", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.149.149", "start_pos": 149, "end_pos": 149, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FQDGRWVNESCRLQSPYFSP", "down_seq": "SSFHHKLHHKRMAKEYLLQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser149" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q6AXV6-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q6AXV6-1.147.147", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.211.211", "start_pos": 211, "end_pos": 211, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ENKILQVFWEEHKVTLGHEE", "down_seq": "QTSSPLLHKDTTSQEVVKKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser211" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q6AXV6-1.224.224", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.224.224", "start_pos": 224, "end_pos": 224, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTLGHEESQTSSPLLHKDTT", "down_seq": "QEVVKKDNATLPAQRSKENT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser224" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q6AXV6-1.211.211", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.272.272", "start_pos": 272, "end_pos": 272, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NRALQQLLEQRQAYWAQAEE", "down_seq": "ATSAEEGKPTSSPKEEPHNS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser272" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q6AXV6-1.275.275", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LQQLLEQRQAYWAQAEESAT", "down_seq": "AEEGKPTSSPKEEPHNSGLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser275" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q6AXV6-1.272.272", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.333.333", "start_pos": 333, "end_pos": 333, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PTTQEDSKTLRALREMVTNL", "down_seq": "GPSGEEEGKAGPNLTDSAQP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser333" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q6AXV6-1.336.336", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.336.336", "start_pos": 336, "end_pos": 336, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QEDSKTLRALREMVTNLSGP", "down_seq": "GEEEGKAGPNLTDSAQPLQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser336" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q6AXV6-1.333.333", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.41.41", "start_pos": 41, "end_pos": 41, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WHLTLHSRPNFTRKREIRSE", "down_seq": "LEIPINVILPQRGTEPFLRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser41" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.85.85", "start_pos": 85, "end_pos": 85, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YTTPRCSRQAAMPRISRRVA", "down_seq": "QHSYPLNRFSSMPFDPMERP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser85" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q6AXV6-1.88.88", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q6AXV6-1.96.96", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PRCSRQAAMPRISRRVASQH", "down_seq": "YPLNRFSSMPFDPMERPTSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser88" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q6AXV6-1.85.85", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q6AXV6-1.96.96", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AXV6-1.96.96", "start_pos": 96, "end_pos": 96, "uniprot_canonical_ac": "Q6AXV6-1", "length": 447, "uniprot_id": "CBY2_RAT", "protein_name": "Protein chibby homolog 2", "refseq_ac": "NP_001017506", "refseq_name": "protein chibby homolog 2", "gene_name": "Cby2", "gene_names_uniprotkb": "Cby2; Spert", "gene_names_refseq": "Cby2; Spert", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MPRISRRVASQHSYPLNRFS", "down_seq": "MPFDPMERPTSQADLELDYN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AXV6", "url": "https://www.uniprot.org/uniprotkb/Q6AXV6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AXV6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AXV6" } ], "site_lbl": "Ser96" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "224", "end_pos": "224" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "333", "end_pos": "333" }, { "start_pos": "336", "end_pos": "336" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q6AXV6-1.85.85", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q6AXV6-1.88.88", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9R1U5-1.358.358", "start_pos": 358, "end_pos": 358, "uniprot_canonical_ac": "Q9R1U5-1", "length": 776, "uniprot_id": "SIK1_RAT", "protein_name": "Serine/threonine-protein kinase SIK1", "refseq_ac": "NP_067725", "refseq_name": "serine/threonine-protein kinase SIK1", "gene_name": "Sik1", "gene_names_uniprotkb": "Sik1; Kid2; Sik; Snf1lk", "gene_names_refseq": "Sik1; Sik; Snf1lk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YYLLLERLREHRSTQPSSRA", "down_seq": "PAPARQPQLRNSDLSSLEVP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr358", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "358", "end_pos": "358" }, { "start_pos": "528", "end_pos": "528" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "322", "end_pos": "322" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9R1U5-1.528.528", "start_pos": 528, "end_pos": 528, "uniprot_canonical_ac": "Q9R1U5-1", "length": 776, "uniprot_id": "SIK1_RAT", "protein_name": "Serine/threonine-protein kinase SIK1", "refseq_ac": "NP_067725", "refseq_name": "serine/threonine-protein kinase SIK1", "gene_name": "Sik1", "gene_names_uniprotkb": "Sik1; Kid2; Sik; Snf1lk", "gene_names_refseq": "Sik1; Sik; Snf1lk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DSCLPFSASEGPAGLGGGLA", "down_seq": "PGLLGTSSPVRLASPFLGSQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr528", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "358", "end_pos": "358" }, { "start_pos": "528", "end_pos": "528" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "322", "end_pos": "322" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9R1U5-1.322.322", "start_pos": 322, "end_pos": 322, "uniprot_canonical_ac": "Q9R1U5-1", "length": 776, "uniprot_id": "SIK1_RAT", "protein_name": "Serine/threonine-protein kinase SIK1", "refseq_ac": "NP_067725", "refseq_name": "serine/threonine-protein kinase SIK1", "gene_name": "Sik1", "gene_names_uniprotkb": "Sik1; Kid2; Sik; Snf1lk", "gene_names_refseq": "Sik1; Sik; Snf1lk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "SIK1 is part of a cell sodium-sensing network that regulates active sodium transport through a calcium-dependent process.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2007", "authors": "Sjostrom M, Stenstrom K, Eneling K, Zwiller J, Katz AI, Takemori H, Bertorello AM", "evidence": [ { "database": "UniProtKB", "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5" }, { "database": "iPTMnet", "id": "Q9R1U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1U5" } ], "reference": [ { "type": "PubMed", "id": "17939993", "url": "https://glygen.org/publication/PubMed/17939993" } ] } ], "crossref": [ { "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17939993", "url": "https://glygen.org/publication/PubMed/17939993", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9R1U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1U5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GDYNEQVLGIMQALGIDRQR", "down_seq": "VESLQNSSYNHFAAIYYLLL", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Abolishes ability to regulate sodium/potassium-transporting ATPase activity following increases in intracellular sodium.", "evidence": [ { "database": "UniProtKB", "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5" }, { "database": "PubMed", "id": "17939993", "url": "https://glygen.org/publication/PubMed/17939993" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by CaMK1", "evidence": [ { "database": "UniProtKB", "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5" }, { "database": "iPTMnet", "id": "Q9R1U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1U5" }, { "database": "PubMed", "id": "17939993", "url": "https://glygen.org/publication/PubMed/17939993" } ], "site_lbl": "Thr322" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "358", "end_pos": "358" }, { "start_pos": "528", "end_pos": "528" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "322", "end_pos": "322" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9R1U5-1.182.182", "start_pos": 182, "end_pos": 182, "uniprot_canonical_ac": "Q9R1U5-1", "length": 776, "uniprot_id": "SIK1_RAT", "protein_name": "Serine/threonine-protein kinase SIK1", "refseq_ac": "NP_067725", "refseq_name": "serine/threonine-protein kinase SIK1", "gene_name": "Sik1", "gene_names_uniprotkb": "Sik1; Kid2; Sik; Snf1lk", "gene_names_refseq": "Sik1; Sik; Snf1lk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Cocaine induces the expression of MEF2C transcription factor in rat striatum through activation of SIK1 and phosphorylation of the histone deacetylase HDAC5.", "journal": "Synapse (New York, N.Y.)", "date": "2012", "authors": "Dietrich JB, Takemori H, Grosch-Dirrig S, Bertorello A, Zwiller J", "evidence": [ { "database": "iPTMnet", "id": "Q9R1U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1U5" } ], "reference": [ { "type": "PubMed", "id": "21954104", "url": "https://glygen.org/publication/PubMed/21954104" } ] }, { "title": "Role of salt-inducible kinase 1 in the activation of MEF2-dependent transcription by BDNF.", "journal": "PloS one", "date": "2013", "authors": "Finsterwald C, Carrard A, Martin JL", "evidence": [ { "database": "iPTMnet", "id": "Q9R1U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1U5" } ], "reference": [ { "type": "PubMed", "id": "23349925", "url": "https://glygen.org/publication/PubMed/23349925" } ] }, { "title": "Salt-inducible kinase 1 is involved in high glucose-induced mesangial cell proliferation mediated by the ALK5 signaling pathway.", "journal": "International journal of molecular medicine", "date": "2013", "authors": "Yu J, Hu X, Yang Z, Takemori H, Li Y, Zheng H, Hong S, Liao Q, Wen X", "evidence": [ { "database": "iPTMnet", "id": "Q9R1U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1U5" } ], "reference": [ { "type": "PubMed", "id": "23670276", "url": "https://glygen.org/publication/PubMed/23670276" } ] } ], "crossref": [ { "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9R1U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1U5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21954104", "url": "https://glygen.org/publication/PubMed/21954104", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23349925", "url": "https://glygen.org/publication/PubMed/23349925", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23670276", "url": "https://glygen.org/publication/PubMed/23670276", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DIKLADFGFGNFYKPGEPLS", "down_seq": "WCGSPPYAAPEVFEGKEYEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by LKB1 and GSK3-beta", "evidence": [ { "database": "UniProtKB", "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5" }, { "database": "iPTMnet", "id": "Q9R1U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1U5" }, { "database": "PubMed", "id": "21954104", "url": "https://glygen.org/publication/PubMed/21954104" }, { "database": "PubMed", "id": "23349925", "url": "https://glygen.org/publication/PubMed/23349925" }, { "database": "PubMed", "id": "23670276", "url": "https://glygen.org/publication/PubMed/23670276" } ], "site_lbl": "Thr182" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "358", "end_pos": "358" }, { "start_pos": "528", "end_pos": "528" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "322", "end_pos": "322" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9R1U5-1.186.186", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9R1U5-1.186.186", "start_pos": 186, "end_pos": 186, "uniprot_canonical_ac": "Q9R1U5-1", "length": 776, "uniprot_id": "SIK1_RAT", "protein_name": "Serine/threonine-protein kinase SIK1", "refseq_ac": "NP_067725", "refseq_name": "serine/threonine-protein kinase SIK1", "gene_name": "Sik1", "gene_names_uniprotkb": "Sik1; Kid2; Sik; Snf1lk", "gene_names_refseq": "Sik1; Sik; Snf1lk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ADFGFGNFYKPGEPLSTWCG", "down_seq": "PPYAAPEVFEGKEYEGPQLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5" } ], "site_lbl": "Ser186" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "358", "end_pos": "358" }, { "start_pos": "528", "end_pos": "528" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "322", "end_pos": "322" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9R1U5-1.182.182", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9R1U5-1.577.577", "start_pos": 577, "end_pos": 577, "uniprot_canonical_ac": "Q9R1U5-1", "length": 776, "uniprot_id": "SIK1_RAT", "protein_name": "Serine/threonine-protein kinase SIK1", "refseq_ac": "NP_067725", "refseq_name": "serine/threonine-protein kinase SIK1", "gene_name": "Sik1", "gene_names_uniprotkb": "Sik1; Kid2; Sik; Snf1lk", "gene_names_refseq": "Sik1; Sik; Snf1lk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Adenovirus-mediated expression of SIK1 improves hepatic glucose and lipid metabolism in type 2 diabetes mellitus rats.", "journal": "PloS one", "date": "2019", "authors": "Song D, Yin L, Wang C, Wen X", "evidence": [ { "database": "RefSeq", "id": "NP_067725", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_067725" }, { "database": "iPTMnet", "id": "Q9R1U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1U5" } ], "reference": [ { "type": "PubMed", "id": "31233505", "url": "https://glygen.org/publication/PubMed/31233505" } ] } ], "crossref": [ { "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q9R1U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1U5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "31233505", "url": "https://glygen.org/publication/PubMed/31233505", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QAGLGATVLPPVSFQEGRRA", "down_seq": "DTSLTQGLKAFRQQLRKNAR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA", "evidence": [ { "database": "UniProtKB", "id": "Q9R1U5", "url": "https://www.uniprot.org/uniprotkb/Q9R1U5" }, { "database": "iPTMnet", "id": "Q9R1U5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1U5" }, { "database": "PubMed", "id": "31233505", "url": "https://glygen.org/publication/PubMed/31233505" } ], "site_lbl": "Ser577" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "358", "end_pos": "358" }, { "start_pos": "528", "end_pos": "528" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "322", "end_pos": "322" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "577", "end_pos": "577" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WUB5-1.196.196", "start_pos": 196, "end_pos": 196, "uniprot_canonical_ac": "Q9WUB5-1", "length": 533, "uniprot_id": "NCOR1_RAT", "protein_name": "Nuclear receptor corepressor 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Ncor1", "gene_names_uniprotkb": "Ncor1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QTSPSALSSTPVRTKPSSRY", "down_seq": "PESQSQTVLHPRPGPRVSPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "site_lbl": "Ser196" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "196", "end_pos": "196" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q9WUB5-1.214.214", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WUB5-1.214.214", "start_pos": 214, "end_pos": 214, "uniprot_canonical_ac": "Q9WUB5-1", "length": 533, "uniprot_id": "NCOR1_RAT", "protein_name": "Nuclear receptor corepressor 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Ncor1", "gene_names_uniprotkb": "Ncor1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RYSPESQSQTVLHPRPGPRV", "down_seq": "PENLVDKSRGSRPGKSPERS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "site_lbl": "Ser214" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "196", "end_pos": "196" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9WUB5-1.196.196", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9WUB5-1.230.230", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WUB5-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "Q9WUB5-1", "length": 533, "uniprot_id": "NCOR1_RAT", "protein_name": "Nuclear receptor corepressor 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Ncor1", "gene_names_uniprotkb": "Ncor1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GPRVSPENLVDKSRGSRPGK", "down_seq": "PERSHIPSEPYEPISPPQGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "site_lbl": "Ser230" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "196", "end_pos": "196" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q9WUB5-1.214.214", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9WUB5-1.245.245", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WUB5-1.245.245", "start_pos": 245, "end_pos": 245, "uniprot_canonical_ac": "Q9WUB5-1", "length": 533, "uniprot_id": "NCOR1_RAT", "protein_name": "Nuclear receptor corepressor 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Ncor1", "gene_names_uniprotkb": "Ncor1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRPGKSPERSHIPSEPYEPI", "down_seq": "PPQGPAVHEKQDSMLLLSQR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "site_lbl": "Ser245" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "196", "end_pos": "196" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9WUB5-1.230.230", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WUB5-1.278.278", "start_pos": 278, "end_pos": 278, "uniprot_canonical_ac": "Q9WUB5-1", "length": 533, "uniprot_id": "NCOR1_RAT", "protein_name": "Nuclear receptor corepressor 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Ncor1", "gene_names_uniprotkb": "Ncor1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SMLLLSQRGMDPAEQRSDSR", "down_seq": "PGSISYLPYFFTKLESTSPM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" } ], "site_lbl": "Ser278" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "196", "end_pos": "196" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WUB5-1.492.492", "start_pos": 492, "end_pos": 492, "uniprot_canonical_ac": "Q9WUB5-1", "length": 533, "uniprot_id": "NCOR1_RAT", "protein_name": "Nuclear receptor corepressor 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Ncor1", "gene_names_uniprotkb": "Ncor1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GSTQFPYNPLTIRMLSSTPP", "down_seq": "PIACAPSAITQAAPHQQSRI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" } ], "site_lbl": "Thr492" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "196", "end_pos": "196" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WUB5-1.529.529", "start_pos": 529, "end_pos": 529, "uniprot_canonical_ac": "Q9WUB5-1", "length": 533, "uniprot_id": "NCOR1_RAT", "protein_name": "Nuclear receptor corepressor 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Ncor1", "gene_names_uniprotkb": "Ncor1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QSRIWEREPAPLLSAQYETL", "down_seq": "DSDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "site_lbl": "Ser529" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "196", "end_pos": "196" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9WUB5-1.531.531", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WUB5-1.531.531", "start_pos": 531, "end_pos": 531, "uniprot_canonical_ac": "Q9WUB5-1", "length": 533, "uniprot_id": "NCOR1_RAT", "protein_name": "Nuclear receptor corepressor 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Ncor1", "gene_names_uniprotkb": "Ncor1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RIWEREPAPLLSAQYETLSD", "down_seq": "DD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "site_lbl": "Ser531" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "196", "end_pos": "196" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9WUB5-1.529.529", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WUB5-1.73.73", "start_pos": 73, "end_pos": 73, "uniprot_canonical_ac": "Q9WUB5-1", "length": 533, "uniprot_id": "NCOR1_RAT", "protein_name": "Nuclear receptor corepressor 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Ncor1", "gene_names_uniprotkb": "Ncor1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSSLSSHRYEAPSDAIEVI", "down_seq": "PASSPAPPQEKPQTYQPEMV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WUB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WUB5" } ], "site_lbl": "Ser73" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "196", "end_pos": "196" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9WUB5-1.77.77", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WUB5-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "Q9WUB5-1", "length": 533, "uniprot_id": "NCOR1_RAT", "protein_name": "Nuclear receptor corepressor 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Ncor1", "gene_names_uniprotkb": "Ncor1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSSHRYEAPSDAIEVISPAS", "down_seq": "PAPPQEKPQTYQPEMVKANQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUB5", "url": "https://www.uniprot.org/uniprotkb/Q9WUB5" } ], "site_lbl": "Ser77" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "196", "end_pos": "196" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "278", "end_pos": "278" }, { "start_pos": "492", "end_pos": "492" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "77", "end_pos": "77" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9WUB5-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK66-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9JK66-1", "length": 465, "uniprot_id": "PRKN_RAT", "protein_name": "E3 ubiquitin-protein ligase parkin", "refseq_ac": "NP_064478", "refseq_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "Prkn", "gene_names_uniprotkb": "Prkn; AABR07001519.1; Park2", "gene_names_refseq": "Park2; Park; Prkn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "O-linked N-acetylglucosamine affects mitochondrial homeostasis by regulating Parkin-dependent mitophagy in hyperoxia-injured alveolar type II cells injury.", "journal": "Respiratory research", "date": "2023-01-16", "authors": "Xuefei Yu, Dongyan Liu, Tianming Li, Hejuan Zheng, Jianhua Fu", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9JK66", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9JK66" } ], "reference": [ { "type": "PubMed", "id": "36647045", "url": "https://glygen.org/publication/PubMed/36647045" } ] } ], "crossref": [ { "id": "36647045", "url": "https://glygen.org/publication/PubMed/36647045", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JK66", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9JK66", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "36647045", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/36647045" }, { "id": "Q9JK66", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9JK66" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "403", "end_pos": "403" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK66-1.403.403", "start_pos": 403, "end_pos": 403, "uniprot_canonical_ac": "Q9JK66-1", "length": 465, "uniprot_id": "PRKN_RAT", "protein_name": "E3 ubiquitin-protein ligase parkin", "refseq_ac": "NP_064478", "refseq_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "Prkn", "gene_names_uniprotkb": "Prkn; AABR07001519.1; Park2", "gene_names_refseq": "Park2; Park; Prkn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Structure of parkin reveals mechanisms for ubiquitin ligase activation.", "journal": "Science (New York, N.Y.)", "date": "2013", "authors": "Trempe JF, Sauve V, Grenier K, Seirafi M, Tang MY, Menade M, Al-Abdul-Wahid S, Krett J, Wong K, Kozlov G, Nagar B, Fon EA, Gehring K", "evidence": [ { "database": "UniProtKB", "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66" } ], "reference": [ { "type": "PubMed", "id": "23661642", "url": "https://glygen.org/publication/PubMed/23661642" } ] } ], "crossref": [ { "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23661642", "url": "https://glygen.org/publication/PubMed/23661642", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "W", "start_aa": "W", "up_seq": "ASGATSQAYRVDQRAAEQAR", "down_seq": "EEASKETIKKTTKPCPRCNV", "mutagenesis": [ { "sequence_org": "W", "sequence_mut": "A", "comment": "Increased autoubiquitination.", "evidence": [ { "database": "UniProtKB", "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66" }, { "database": "PubMed", "id": "23661642", "url": "https://glygen.org/publication/PubMed/23661642" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "403", "end_pos": "403" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JK66-1.175.175", "start_pos": 175, "end_pos": 175, "uniprot_canonical_ac": "Q9JK66-1", "length": 465, "uniprot_id": "PRKN_RAT", "protein_name": "E3 ubiquitin-protein ligase parkin", "refseq_ac": "NP_064478", "refseq_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "Prkn", "gene_names_uniprotkb": "Prkn; AABR07001519.1; Park2", "gene_names_refseq": "Park2; Park; Prkn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HKVQPGKLRVQCGTCRQATL", "down_seq": "LAQGPSCWDDVLIPNRMSGE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PINK1", "evidence": [ { "database": "UniProtKB", "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66" } ], "site_lbl": "Thr175" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "403", "end_pos": "403" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK66-1.217.217", "start_pos": 217, "end_pos": 217, "uniprot_canonical_ac": "Q9JK66-1", "length": 465, "uniprot_id": "PRKN_RAT", "protein_name": "E3 ubiquitin-protein ligase parkin", "refseq_ac": "NP_064478", "refseq_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "Prkn", "gene_names_uniprotkb": "Prkn; AABR07001519.1; Park2", "gene_names_refseq": "Park2; Park; Prkn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QSPDCPGTRAEFFFKCGAHP", "down_seq": "SDKDTSVALNLITNNSRSIP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66" } ], "site_lbl": "Thr217" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "403", "end_pos": "403" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK66-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "Q9JK66-1", "length": 465, "uniprot_id": "PRKN_RAT", "protein_name": "E3 ubiquitin-protein ligase parkin", "refseq_ac": "NP_064478", "refseq_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "Prkn", "gene_names_uniprotkb": "Prkn; AABR07001519.1; Park2", "gene_names_refseq": "Park2; Park; Prkn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FAGKELQNHLTVQNCDLEQQ", "down_seq": "IVHIVQRPQRKSHETNASGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PINK1", "evidence": [ { "database": "UniProtKB", "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66" } ], "site_lbl": "Ser65" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "403", "end_pos": "403" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q9JK66-1.80.80", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JK66-1.80.80", "start_pos": 80, "end_pos": 80, "uniprot_canonical_ac": "Q9JK66-1", "length": 465, "uniprot_id": "PRKN_RAT", "protein_name": "E3 ubiquitin-protein ligase parkin", "refseq_ac": "NP_064478", "refseq_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "Prkn", "gene_names_uniprotkb": "Prkn; AABR07001519.1; Park2", "gene_names_refseq": "Park2; Park; Prkn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DLEQQSIVHIVQRPQRKSHE", "down_seq": "NASGGDKPQSTPEGSIWEPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9JK66", "url": "https://www.uniprot.org/uniprotkb/Q9JK66" } ], "site_lbl": "Thr80" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "403", "end_pos": "403" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9JK66-1.65.65", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9R064-1.425.425", "start_pos": 425, "end_pos": 425, "uniprot_canonical_ac": "Q9R064-1", "length": 454, "uniprot_id": "GORS2_RAT", "protein_name": "Golgi reassembly-stacking protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gorasp2", "gene_names_uniprotkb": "Gorasp2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Exploring the O-GlcNAc proteome: direct identification of O-GlcNAc-modified proteins from the brain.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2004", "authors": "Khidekel N, Ficarro SB, Peters EC, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9R064", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9R064" }, { "database": "O-GlcNAc Atlas", "id": "Q9R064", "url": "https://oglcnac.org/atlas/detail/Q9R064" } ], "reference": [ { "type": "PubMed", "id": "15340146", "url": "https://glygen.org/publication/PubMed/15340146" } ] }, { "title": "Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics.", "journal": "Nature chemical biology", "date": "2007", "authors": "Khidekel N, Ficarro SB, Clark PM, Bryan MC, Swaney DL, Rexach JE, Sun YE, Coon JJ, Peters EC, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Atlas", "id": "Q9R064", "url": "https://oglcnac.org/atlas/detail/Q9R064" } ], "reference": [ { "type": "PubMed", "id": "17496889", "url": "https://glygen.org/publication/PubMed/17496889" } ] } ], "crossref": [ { "id": "15340146", "url": "https://glygen.org/publication/PubMed/15340146", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9R064", "url": "https://oglcnac.org/atlas/detail/Q9R064", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "17496889", "url": "https://glygen.org/publication/PubMed/17496889", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AKADTSSLTVDVMSPASKVP", "down_seq": "TVEDRVSDCTPAMEKPVSAV", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr425", "evidence": [ { "id": "15340146", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/15340146" }, { "id": "Q9R064", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9R064" }, { "id": "17496889", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/17496889" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "426", "end_pos": "426" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9R064-1.411.411", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9R064-1.426.426", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9R064-1.435.435", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9R064-1.443.443", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9R064-1.426.426", "start_pos": 426, "end_pos": 426, "uniprot_canonical_ac": "Q9R064-1", "length": 454, "uniprot_id": "GORS2_RAT", "protein_name": "Golgi reassembly-stacking protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gorasp2", "gene_names_uniprotkb": "Gorasp2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Exploring the O-GlcNAc proteome: direct identification of O-GlcNAc-modified proteins from the brain.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2004", "authors": "Khidekel N, Ficarro SB, Peters EC, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9R064", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9R064" }, { "database": "O-GlcNAc Atlas", "id": "Q9R064", "url": "https://oglcnac.org/atlas/detail/Q9R064" } ], "reference": [ { "type": "PubMed", "id": "15340146", "url": "https://glygen.org/publication/PubMed/15340146" } ] }, { "title": "Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics.", "journal": "Nature chemical biology", "date": "2007", "authors": "Khidekel N, Ficarro SB, Clark PM, Bryan MC, Swaney DL, Rexach JE, Sun YE, Coon JJ, Peters EC, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Atlas", "id": "Q9R064", "url": "https://oglcnac.org/atlas/detail/Q9R064" } ], "reference": [ { "type": "PubMed", "id": "17496889", "url": "https://glygen.org/publication/PubMed/17496889" } ] } ], "crossref": [ { "id": "15340146", "url": "https://glygen.org/publication/PubMed/15340146", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9R064", "url": "https://oglcnac.org/atlas/detail/Q9R064", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "17496889", "url": "https://glygen.org/publication/PubMed/17496889", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KADTSSLTVDVMSPASKVPT", "down_seq": "VEDRVSDCTPAMEKPVSAVT", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr426", "evidence": [ { "id": "15340146", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/15340146" }, { "id": "Q9R064", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9R064" }, { "id": "17496889", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/17496889" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "426", "end_pos": "426" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9R064-1.411.411", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9R064-1.425.425", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9R064-1.435.435", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9R064-1.443.443", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9R064-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9R064-1", "length": 454, "uniprot_id": "GORS2_RAT", "protein_name": "Golgi reassembly-stacking protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gorasp2", "gene_names_uniprotkb": "Gorasp2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Exploring the O-GlcNAc proteome: direct identification of O-GlcNAc-modified proteins from the brain.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2004", "authors": "Khidekel N, Ficarro SB, Peters EC, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9R064", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9R064" }, { "database": "O-GlcNAc Atlas", "id": "Q9R064", "url": "https://oglcnac.org/atlas/detail/Q9R064" } ], "reference": [ { "type": "PubMed", "id": "15340146", "url": "https://glygen.org/publication/PubMed/15340146" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9R064", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9R064" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags.", "journal": "Nature chemical biology", "date": "2010", "authors": "Rexach JE, Rogers CJ, Yu SH, Tao J, Sun YE, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9R064", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9R064" } ], "reference": [ { "type": "PubMed", "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584" } ] }, { "title": "GRASP55 Senses Glucose Deprivation through O-GlcNAcylation to Promote Autophagosome-Lysosome Fusion.", "journal": "Developmental cell", "date": "2018", "authors": "Zhang X, Wang L, Lak B, Li J, Jokitalo E, Wang Y", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9R064", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9R064" } ], "reference": [ { "type": "PubMed", "id": "29689198", "url": "https://glygen.org/publication/PubMed/29689198" } ] } ], "crossref": [ { "id": "15340146", "url": "https://glygen.org/publication/PubMed/15340146", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9R064", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9R064", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29689198", "url": "https://glygen.org/publication/PubMed/29689198", "database": "PubMed", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "15340146", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/15340146" }, { "id": "Q9R064", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9R064" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "20657584", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20657584" }, { "id": "29689198", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29689198" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "426", "end_pos": "426" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9R064-1.2.2", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9R064-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "Q9R064-1", "length": 454, "uniprot_id": "GORS2_RAT", "protein_name": "Golgi reassembly-stacking protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gorasp2", "gene_names_uniprotkb": "Gorasp2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "GRASP55, a second mammalian GRASP protein involved in the stacking of Golgi cisternae in a cell-free system.", "journal": "The EMBO journal", "date": "1999", "authors": "Shorter J, Watson R, Giannakou ME, Clarke M, Warren G, Barr FA", "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "reference": [ { "type": "PubMed", "id": "10487747", "url": "https://glygen.org/publication/PubMed/10487747" } ] } ], "crossref": [ { "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10487747", "url": "https://glygen.org/publication/PubMed/10487747", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "M", "down_seq": "SSQSVEIPGGGTEGYHVLRV", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "No or few Golgi targeting, accumulates in the cytoplasm.", "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" }, { "database": "PubMed", "id": "10487747", "url": "https://glygen.org/publication/PubMed/10487747" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "426", "end_pos": "426" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9R064-1.0.0", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9R064-1.214.214", "start_pos": 214, "end_pos": 214, "uniprot_canonical_ac": "Q9R064-1", "length": 454, "uniprot_id": "GORS2_RAT", "protein_name": "Golgi reassembly-stacking protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gorasp2", "gene_names_uniprotkb": "Gorasp2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IGYGYLHRIPTRPFEEGKKI", "down_seq": "LPGQMTGTPITPLKDGFTQV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "site_lbl": "Ser214" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "426", "end_pos": "426" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q9R064-1.222.222", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9R064-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9R064-1.222.222", "start_pos": 222, "end_pos": 222, "uniprot_canonical_ac": "Q9R064-1", "length": 454, "uniprot_id": "GORS2_RAT", "protein_name": "Golgi reassembly-stacking protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gorasp2", "gene_names_uniprotkb": "Gorasp2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IPTRPFEEGKKISLPGQMTG", "down_seq": "PITPLKDGFTQVQLSSVSPP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "site_lbl": "Thr222" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "426", "end_pos": "426" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q9R064-1.214.214", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9R064-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9R064-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "Q9R064-1", "length": 454, "uniprot_id": "GORS2_RAT", "protein_name": "Golgi reassembly-stacking protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gorasp2", "gene_names_uniprotkb": "Gorasp2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RPFEEGKKISLPGQMTGTPI", "down_seq": "PLKDGFTQVQLSSVSPPSLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by MAPK", "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "site_lbl": "Thr225" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "426", "end_pos": "426" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9R064-1.214.214", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9R064-1.222.222", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9R064-1.411.411", "start_pos": 411, "end_pos": 411, "uniprot_canonical_ac": "Q9R064-1", "length": 454, "uniprot_id": "GORS2_RAT", "protein_name": "Golgi reassembly-stacking protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gorasp2", "gene_names_uniprotkb": "Gorasp2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPAMGPPSDPVMTTAKADTS", "down_seq": "LTVDVMSPASKVPTTVEDRV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "site_lbl": "Ser411" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "426", "end_pos": "426" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q9R064-1.425.425", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9R064-1.426.426", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9R064-1.435.435", "start_pos": 435, "end_pos": 435, "uniprot_canonical_ac": "Q9R064-1", "length": 454, "uniprot_id": "GORS2_RAT", "protein_name": "Golgi reassembly-stacking protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gorasp2", "gene_names_uniprotkb": "Gorasp2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DVMSPASKVPTTVEDRVSDC", "down_seq": "PAMEKPVSAVTDANASGAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "site_lbl": "Thr435" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "426", "end_pos": "426" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9R064-1.425.425", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9R064-1.426.426", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9R064-1.443.443", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9R064-1.451.451", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9R064-1.443.443", "start_pos": 443, "end_pos": 443, "uniprot_canonical_ac": "Q9R064-1", "length": 454, "uniprot_id": "GORS2_RAT", "protein_name": "Golgi reassembly-stacking protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gorasp2", "gene_names_uniprotkb": "Gorasp2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VPTTVEDRVSDCTPAMEKPV", "down_seq": "AVTDANASGAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "site_lbl": "Ser443" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "426", "end_pos": "426" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9R064-1.425.425", "categories": [ "glycosylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q9R064-1.426.426", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9R064-1.435.435", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9R064-1.451.451", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9R064-1.451.451", "start_pos": 451, "end_pos": 451, "uniprot_canonical_ac": "Q9R064-1", "length": 454, "uniprot_id": "GORS2_RAT", "protein_name": "Golgi reassembly-stacking protein 2", "refseq_ac": "", "refseq_name": "", "gene_name": "Gorasp2", "gene_names_uniprotkb": "Gorasp2", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VSDCTPAMEKPVSAVTDANA", "down_seq": "GAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9R064", "url": "https://www.uniprot.org/uniprotkb/Q9R064" } ], "site_lbl": "Ser451" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "425", "end_pos": "425" }, { "start_pos": "426", "end_pos": "426" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "214", "end_pos": "214" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "451", "end_pos": "451" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q9R064-1.435.435", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9R064-1.443.443", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q64578-1.441.441", "start_pos": 441, "end_pos": 441, "uniprot_canonical_ac": "Q64578-1", "length": 994, "uniprot_id": "AT2A1_RAT", "protein_name": "Sarcoplasmic/endoplasmic reticulum calcium ATPase 1", "refseq_ac": "NP_478120", "refseq_name": "sarcoplasmic/endoplasmic reticulum calcium ATPase 1", "gene_name": "AABR07005775.1; Atp2a1", "gene_names_uniprotkb": "AABR07005775.1; Atp2a1; AABR07005775.1; Atp2a1", "gene_names_refseq": "Atp2a1; Serca1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578" }, { "database": "iPTMnet", "id": "Q64578", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64578" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q64578", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64578", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NDSSLDFNETKGVYEKVGEA", "down_seq": "ETALTTLVEKMNVFNTEVRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q64578", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64578" } ], "site_lbl": "Thr441" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "441", "end_pos": "441" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64578-1.569.569", "start_pos": 569, "end_pos": 569, "uniprot_canonical_ac": "Q64578-1", "length": 994, "uniprot_id": "AT2A1_RAT", "protein_name": "Sarcoplasmic/endoplasmic reticulum calcium ATPase 1", "refseq_ac": "NP_478120", "refseq_name": "sarcoplasmic/endoplasmic reticulum calcium ATPase 1", "gene_name": "AABR07005775.1; Atp2a1", "gene_names_uniprotkb": "AABR07005775.1; Atp2a1; AABR07005775.1; Atp2a1", "gene_names_refseq": "Atp2a1; Serca1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578" }, { "database": "iPTMnet", "id": "Q64578", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64578" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q64578", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64578", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IKEWGTGRDTLRCLALATRD", "down_seq": "PPKREEMVLDDSAKFMEYEM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q64578", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64578" } ], "site_lbl": "Thr569" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "441", "end_pos": "441" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q64578-1.581.581", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64578-1.581.581", "start_pos": 581, "end_pos": 581, "uniprot_canonical_ac": "Q64578-1", "length": 994, "uniprot_id": "AT2A1_RAT", "protein_name": "Sarcoplasmic/endoplasmic reticulum calcium ATPase 1", "refseq_ac": "NP_478120", "refseq_name": "sarcoplasmic/endoplasmic reticulum calcium ATPase 1", "gene_name": "AABR07005775.1; Atp2a1", "gene_names_uniprotkb": "AABR07005775.1; Atp2a1; AABR07005775.1; Atp2a1", "gene_names_refseq": "Atp2a1; Serca1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578" }, { "database": "iPTMnet", "id": "Q64578", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64578" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q64578", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64578", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CLALATRDTPPKREEMVLDD", "down_seq": "AKFMEYEMDLTFVGVVGMLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q64578", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64578" } ], "site_lbl": "Ser581" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "441", "end_pos": "441" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q64578-1.569.569", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64578-1.643.643", "start_pos": 643, "end_pos": 643, "uniprot_canonical_ac": "Q64578-1", "length": 994, "uniprot_id": "AT2A1_RAT", "protein_name": "Sarcoplasmic/endoplasmic reticulum calcium ATPase 1", "refseq_ac": "NP_478120", "refseq_name": "sarcoplasmic/endoplasmic reticulum calcium ATPase 1", "gene_name": "AABR07005775.1; Atp2a1", "gene_names_uniprotkb": "AABR07005775.1; Atp2a1; AABR07005775.1; Atp2a1", "gene_names_refseq": "Atp2a1; Serca1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578" }, { "database": "iPTMnet", "id": "Q64578", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64578" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q64578", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64578", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MITGDNKGTAIAICRRIGIF", "down_seq": "ENEEVADRAYTGREFDDLPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q64578", "url": "https://www.uniprot.org/uniprotkb/Q64578" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q64578", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64578" } ], "site_lbl": "Ser643" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "441", "end_pos": "441" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "643", "end_pos": "643" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63358-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q63358-1", "length": 1980, "uniprot_id": "MYO9B_RAT", "protein_name": "Unconventional myosin-IXb", "refseq_ac": "", "refseq_name": "", "gene_name": "Myo9b", "gene_names_uniprotkb": "Myo9b; Myr5", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q63358", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q63358" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63358", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q63358", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "Q63358", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q63358" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1108", "end_pos": "1108" }, { "start_pos": "1115", "end_pos": "1115" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1222", "end_pos": "1222" }, { "start_pos": "1229", "end_pos": "1229" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1247", "end_pos": "1247" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1268", "end_pos": "1268" }, { "start_pos": "1304", "end_pos": "1304" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1327", "end_pos": "1327" }, { "start_pos": "1329", "end_pos": "1329" }, { "start_pos": "1337", "end_pos": "1337" }, { "start_pos": "1649", "end_pos": "1649" }, { "start_pos": "1886", "end_pos": "1886" }, { "start_pos": "1932", "end_pos": "1932" }, { "start_pos": "1952", "end_pos": "1952" }, { "start_pos": "1959", "end_pos": "1959" }, { "start_pos": "1965", "end_pos": "1965" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "718", "end_pos": "718" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63358-1.1046.1046", "start_pos": 1046, "end_pos": 1046, "uniprot_canonical_ac": "Q63358-1", "length": 1980, "uniprot_id": "MYO9B_RAT", "protein_name": "Unconventional myosin-IXb", "refseq_ac": "", "refseq_name": "", "gene_name": "Myo9b", "gene_names_uniprotkb": "Myo9b; Myr5", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" }, { "database": "iPTMnet", "id": "Q63358", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63358" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63358", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63358", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RHSIIRLQSLCRGHLQRRSF", "down_seq": "QMMLEKQKAEQARETAGAEM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63358", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63358" } ], "site_lbl": "Ser1046" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1108", "end_pos": "1108" }, { "start_pos": "1115", "end_pos": "1115" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1222", "end_pos": "1222" }, { "start_pos": "1229", "end_pos": "1229" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1247", "end_pos": "1247" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1268", "end_pos": "1268" }, { "start_pos": "1304", "end_pos": "1304" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1327", "end_pos": "1327" }, { "start_pos": "1329", "end_pos": "1329" }, { "start_pos": "1337", "end_pos": "1337" }, { "start_pos": "1649", "end_pos": "1649" }, { "start_pos": "1886", "end_pos": "1886" }, { "start_pos": "1932", "end_pos": "1932" }, { "start_pos": "1952", "end_pos": "1952" }, { "start_pos": "1959", "end_pos": "1959" }, { "start_pos": "1965", "end_pos": "1965" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "718", "end_pos": "718" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63358-1.1108.1108", "start_pos": 1108, "end_pos": 1108, "uniprot_canonical_ac": "Q63358-1", "length": 1980, "uniprot_id": "MYO9B_RAT", "protein_name": "Unconventional myosin-IXb", "refseq_ac": "", "refseq_name": "", "gene_name": "Myo9b", "gene_names_uniprotkb": "Myo9b; Myr5", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PESLGVETETWMNSKSPNGL", "down_seq": "PKKEIPSPEMETPAQKTVPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" } ], "site_lbl": "Ser1108" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1108", "end_pos": "1108" }, { "start_pos": "1115", "end_pos": "1115" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1222", "end_pos": "1222" }, { "start_pos": "1229", "end_pos": "1229" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1247", "end_pos": "1247" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1268", "end_pos": "1268" }, { "start_pos": "1304", "end_pos": "1304" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1327", "end_pos": "1327" }, { "start_pos": "1329", "end_pos": "1329" }, { "start_pos": "1337", "end_pos": "1337" }, { "start_pos": "1649", "end_pos": "1649" }, { "start_pos": "1886", "end_pos": "1886" }, { "start_pos": "1932", "end_pos": "1932" }, { "start_pos": "1952", "end_pos": "1952" }, { "start_pos": "1959", "end_pos": "1959" }, { "start_pos": "1965", "end_pos": "1965" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "718", "end_pos": "718" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q63358-1.1115.1115", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63358-1.1115.1115", "start_pos": 1115, "end_pos": 1115, "uniprot_canonical_ac": "Q63358-1", "length": 1980, "uniprot_id": "MYO9B_RAT", "protein_name": "Unconventional myosin-IXb", "refseq_ac": "", "refseq_name": "", "gene_name": "Myo9b", "gene_names_uniprotkb": "Myo9b; Myr5", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TETWMNSKSPNGLSPKKEIP", "down_seq": "PEMETPAQKTVPAESHEKVP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" } ], "site_lbl": "Ser1115" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1108", "end_pos": "1108" }, { "start_pos": "1115", "end_pos": "1115" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1222", "end_pos": "1222" }, { "start_pos": "1229", "end_pos": "1229" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1247", "end_pos": "1247" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1268", "end_pos": "1268" }, { "start_pos": "1304", "end_pos": "1304" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1327", "end_pos": "1327" }, { "start_pos": "1329", "end_pos": "1329" }, { "start_pos": "1337", "end_pos": "1337" }, { "start_pos": "1649", "end_pos": "1649" }, { "start_pos": "1886", "end_pos": "1886" }, { "start_pos": "1932", "end_pos": "1932" }, { "start_pos": "1952", "end_pos": "1952" }, { "start_pos": "1959", "end_pos": "1959" }, { "start_pos": "1965", "end_pos": "1965" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "718", "end_pos": "718" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q63358-1.1108.1108", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63358-1.1177.1177", "start_pos": 1177, "end_pos": 1177, "uniprot_canonical_ac": "Q63358-1", "length": 1980, "uniprot_id": "MYO9B_RAT", "protein_name": "Unconventional myosin-IXb", "refseq_ac": "", "refseq_name": "", "gene_name": "Myo9b", "gene_names_uniprotkb": "Myo9b; Myr5", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" }, { "database": "iPTMnet", "id": "Q63358", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63358" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63358", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63358", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KHIQSCREENSTLREPSRKA", "down_seq": "LETGESFPEDTKEPREDGLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63358", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63358" } ], "site_lbl": "Ser1177" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1108", "end_pos": "1108" }, { "start_pos": "1115", "end_pos": "1115" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1222", "end_pos": "1222" }, { "start_pos": "1229", "end_pos": "1229" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1247", "end_pos": "1247" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1268", "end_pos": "1268" }, { "start_pos": "1304", "end_pos": "1304" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1327", "end_pos": "1327" }, { "start_pos": "1329", "end_pos": "1329" }, { "start_pos": "1337", "end_pos": "1337" }, { "start_pos": "1649", "end_pos": "1649" }, { "start_pos": "1886", "end_pos": "1886" }, { "start_pos": "1932", "end_pos": "1932" }, { "start_pos": "1952", "end_pos": "1952" }, { "start_pos": "1959", "end_pos": "1959" }, { "start_pos": "1965", "end_pos": "1965" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "718", "end_pos": "718" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63358-1.1220.1220", "start_pos": 1220, "end_pos": 1220, "uniprot_canonical_ac": "Q63358-1", "length": 1980, "uniprot_id": "MYO9B_RAT", "protein_name": "Unconventional myosin-IXb", "refseq_ac": "", "refseq_name": "", "gene_name": "Myo9b", "gene_names_uniprotkb": "Myo9b; Myr5", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" }, { "database": "iPTMnet", "id": "Q63358", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63358" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63358", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63358", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TETAAPSCPKQVPIVGDPPR", "down_seq": "PSPLQRPASLDLDSRVSPVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63358", "url": "https://www.uniprot.org/uniprotkb/Q63358" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63358", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63358" } ], "site_lbl": "Ser1220" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1046", "end_pos": "1046" }, { "start_pos": "1108", "end_pos": "1108" }, { "start_pos": "1115", "end_pos": "1115" }, { "start_pos": "1177", "end_pos": "1177" }, { "start_pos": "1220", "end_pos": "1220" }, { "start_pos": "1222", "end_pos": "1222" }, { "start_pos": "1229", "end_pos": "1229" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1247", "end_pos": "1247" }, { "start_pos": "1266", "end_pos": "1266" }, { "start_pos": "1268", "end_pos": "1268" }, { "start_pos": "1304", "end_pos": "1304" }, { "start_pos": "1319", "end_pos": "1319" }, { "start_pos": "1327", "end_pos": "1327" }, { "start_pos": "1329", "end_pos": "1329" }, { "start_pos": "1337", "end_pos": "1337" }, { "start_pos": "1649", "end_pos": "1649" }, { "start_pos": "1886", "end_pos": "1886" }, { "start_pos": "1932", "end_pos": "1932" }, { "start_pos": "1952", "end_pos": "1952" }, { "start_pos": "1959", "end_pos": "1959" }, { "start_pos": "1965", "end_pos": "1965" }, { "start_pos": "717", "end_pos": "717" }, { "start_pos": "718", "end_pos": "718" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q63358-1.1222.1222", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q63358-1.1229.1229", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q63358-1.1237.1237", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] } ]