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"title": "Mechanisms underlying a decrease in KCl-induced contraction after long-term serum-free organ culture of rat isolated mesenteric artery.", "journal": "The Journal of veterinary medical science", "date": "2014", "authors": "Morita T, Okada M, Yamawaki H", "evidence": [ { "database": "iPTMnet", "id": "P42346", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42346" } ], "reference": [ { "type": "PubMed", "id": "24694942", "url": "https://glygen.org/publication/PubMed/24694942" } ] }, { "title": "Mitochondrial quality control systems sustain brain mitochondrial bioenergetics in early stages of type 2 diabetes.", "journal": "Molecular and cellular biochemistry", "date": "2014", "authors": "Santos RX, Correia SC, Alves MG, Oliveira PF, Cardoso S, Carvalho C, Seica R, Santos MS, Moreira PI", "evidence": [ { "database": "iPTMnet", "id": "P42346", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42346" } ], "reference": [ { "type": "PubMed", "id": 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"url": "https://glygen.org/publication/PubMed/25474550" } ] }, { "title": "Endurance exercise induces REDD1 expression and transiently decreases mTORC1 signaling in rat skeletal muscle.", "journal": "Physiological reports", "date": "2014", "authors": "Hayasaka M, Tsunekawa H, Yoshinaga M, Murakami T", "evidence": [ { "database": "iPTMnet", "id": "P42346", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42346" } ], "reference": [ { "type": "PubMed", "id": "25539833", "url": "https://glygen.org/publication/PubMed/25539833" } ] }, { "title": "The Effects of Methylene Blue on Autophagy and Apoptosis in MRI-Defined Normal Tissue, Ischemic Penumbra and Ischemic Core.", "journal": "PloS one", "date": "2015", "authors": "Jiang Z, Watts LT, Huang S, Shen Q, Rodriguez P, Chen C, Zhou C, Duong TQ", "evidence": [ { "database": "iPTMnet", "id": "P42346", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42346" } ], "reference": [ { "type": "PubMed", "id": "26121129", "url": "https://glygen.org/publication/PubMed/26121129" } ] }, { "title": "Age-dependent changes of the antioxidant system in rat livers are accompanied by altered MAPK activation and a decline in motor signaling.", "journal": "EXCLI journal", "date": "2015", "authors": "Yang W, Burkhardt B, Fischer L, Beirow M, Bork N, Wonne EC, Wagner C, Husen B, Zeilinger K, Liu L, Nussler AK", "evidence": [ { "database": "iPTMnet", "id": "P42346", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42346" } ], "reference": [ { "type": "PubMed", "id": "27004051", "url": "https://glygen.org/publication/PubMed/27004051" } ] }, { "title": "Activator of G-protein Signaling 3 Controls Renal Epithelial Cell Survival and ERK5 Activation.", "journal": "Journal of molecular signaling", "date": "2015", "authors": "Rasmussen SA, Kwon M, Pressly JD, Blumer JB, Regner KR, Park F", "evidence": [ { "database": "iPTMnet", "id": "P42346", "url": 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"journal": "Chinese medical journal", "date": "2018-05-20", "authors": "Wang Hao, Cui Na, Han Wen, Su Long-Xiang, Long Yun, Liu Da-Wei", "evidence": [ { "database": "iPTMnet", "id": "P42346", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42346" } ], "reference": [ { "type": "PubMed", "id": "29722337", "url": "https://glygen.org/publication/PubMed/29722337" } ] }, { "title": "Protective role of arnebin-1 in rats with nonalcoholic fatty liver disease.", "journal": "The Journal of international medical research", "date": "2019", "authors": "Yang W, Yang M, Yao H, Ma Y, Ren X, Teng L, Wang T", "evidence": [ { "database": "iPTMnet", "id": "P42346", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42346" } ], "reference": [ { "type": "PubMed", "id": "30678506", "url": "https://glygen.org/publication/PubMed/30678506" } ] }, { "title": "Palmitic acid-induced lipotoxicity promotes a novel interplay between Akt-mTOR, IRS-1, and FFAR1 signaling in pancreatic \u03b2-cells.", "journal": "Biological research", "date": "2019-08-19", "authors": "Marafie Sulaiman K, Al-Shawaf Eman M, Abubaker Jehad, Arefanian Hossein", "evidence": [ { "database": "iPTMnet", "id": "P42346", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42346" } ], "reference": [ { "type": "PubMed", "id": "31426858", "url": "https://glygen.org/publication/PubMed/31426858" } ] }, { "title": "Yokukansan, a Kampo medicine, enhances the level of neuronal lineage markers in differentiated P19 embryonic carcinoma cells.", "journal": "Heliyon", "date": "2019-10", "authors": "Fukui Makoto, Katayama Syouichi, Ikeya Yukinobu, Inazu Tetsuya", "evidence": [ { "database": "iPTMnet", "id": "P42346", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P42346" } ], "reference": [ { "type": "PubMed", "id": "31692643", "url": "https://glygen.org/publication/PubMed/31692643" } ] }, { "title": "Alpha-Lipoic Acid Protects Cardiomyocytes against Heat Stroke-Induced Apoptosis 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Reported structure can be attached to the following: ASN-93 ; ASN-93", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G50073PQ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "G55220VL", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "ASN-93", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G56555MU", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-93 ; ASN-93", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G60923RB", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "G62765YT", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G68318VE", "type": "N-linked;o-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "G79941IJ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "G82680EC", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. 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