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Genomics", "date": "2022", "authors": "He Luqingqing, Zhang Qinxin, Jiang Dongya, Zhang Yunfeng, Wei Yuxuan, Yang Yuxi, Li Nan, Wang Shuang, Yue Yunyun, Zhao Qingshun", "reference": { "type": "PubMed", "id": "34923164", "url": "https://pubmed.ncbi.nlm.nih.gov/34923164" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q804Q5-1", "protein_name": "Fez family zinc finger protein 2", "gene_name": "fezf2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q804Q5", "url": "https://www.uniprot.org/uniprotkb/Q804Q5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34923164", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"date": "2005-05", "authors": "Simons Matias, Gloy Joachim, Ganner Athina, Bullerkotte Axel, Bashkurov Mikhail, Kr\u00f6nig Corinna, Schermer Bernhard, Benzing Thomas, Cabello Olga A, Jenny Andreas, Mlodzik Marek, Polok Bozena, Driever Wolfgang, Obara Tomoko, Walz Gerd", "reference": { "type": "PubMed", "id": "15852005", "url": "https://pubmed.ncbi.nlm.nih.gov/15852005" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8UVC1-1", "protein_name": "Inversin", "gene_name": "invs", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O14640-1", "protein_name": "Segment polarity protein dishevelled homolog DVL-1", "gene_name": "DVL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y283-1", "protein_name": "Inversin", "gene_name": "INVS", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q8UVC1", "url": "https://www.uniprot.org/uniprotkb/Q8UVC1" } ], "common_name": "Zebrafish", 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communications", "date": "2023-09-17", "authors": "Wang Hui, Zaiser Friedemann, Eckert Priska, Ruf Johannes, Kayser Nicolas, Veenstra Anna C, M\u00fcller Merle, Haas Rebecca, Walz Gerd, Yakulov Toma A", "reference": { "type": "PubMed", "id": "37352572", "url": "https://pubmed.ncbi.nlm.nih.gov/37352572" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8UVC1-1", "protein_name": "Inversin", "gene_name": "invs", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TJB3-1", "protein_name": "Protein fantom isoform X1", "gene_name": "rpgrip1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IVI8-1", "protein_name": "Homeobox even-skipped homolog protein 1", "gene_name": "evx1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q8UVC1", "url": "https://www.uniprot.org/uniprotkb/Q8UVC1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", 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J. Biochem.", "date": "2003", "authors": "Liu Rong-Zong, Denovan-Wright Eileen M, Wright Jonathan M", "reference": { "type": "PubMed", "id": "12869198", "url": "https://pubmed.ncbi.nlm.nih.gov/12869198" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SYN5-1", "protein_name": "Retinoic acid receptor RXR-beta-A", "gene_name": "rxrba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUU5-1", "protein_name": "Zinc finger and BTB domain-containing protein 22b", "gene_name": "zbtb22b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HYH8-1", "protein_name": "Death domain-associated protein 6", "gene_name": "daxx", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A3QJX7-1", "protein_name": "Opioid receptor, delta 1a", "gene_name": "oprd1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9PUS3-1", "protein_name": "Proteasome subunit beta", "gene_name": "psmb9a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SYN5", "url": "https://www.uniprot.org/uniprotkb/Q7SYN5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12869198", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The orphan COUP-TF nuclear receptors are markers for neurogenesis from cnidarians to vertebrates.", "journal": "Dev. 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"authors": "Jones B B, Ohno C K, Allenby G, Boffa M B, Levin A A, Grippo J F, Petkovich M", "reference": { "type": "PubMed", "id": "7565671", "url": "https://pubmed.ncbi.nlm.nih.gov/7565671" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SYN5-1", "protein_name": "Retinoic acid receptor RXR-beta-A", "gene_name": "rxrba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q90415-1", "protein_name": "Retinoic acid receptor RXR-alpha-B", "gene_name": "rxrab", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q90416-1", "protein_name": "Retinoic acid receptor RXR-gamma-A", "gene_name": "rxrga", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q90417-1", "protein_name": "Retinoic acid receptor RXR-beta-B", "gene_name": "rxrbb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q91392-1", "protein_name": "Retinoic acid receptor gamma-A", "gene_name": "rarga", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QFB2-1", 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Natl. Acad. Sci. U.S.A.", "date": "1997", "authors": "Escriva H, Safi R, H\u00e4nni C, Langlois M C, Saumitou-Laprade P, Stehelin D, Capron A, Pierce R, Laudet V", "reference": { "type": "PubMed", "id": "9192646", "url": "https://pubmed.ncbi.nlm.nih.gov/9192646" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SYN5-1", "protein_name": "Retinoic acid receptor RXR-beta-A", "gene_name": "rxrba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q90416-1", "protein_name": "Retinoic acid receptor RXR-gamma-A", "gene_name": "rxrga", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q91392-1", "protein_name": "Retinoic acid receptor gamma-A", "gene_name": "rarga", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9PVE4-1", "protein_name": "Thyroid hormone receptor beta", "gene_name": "thrb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q06725-1", "protein_name": "Nuclear receptor subfamily 2 group F member 1-A", "gene_name": "nr2f1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HMR2-1", "protein_name": "Steroid hormone receptor ERR2 isoform X1", "gene_name": "esrrb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NRP3-1", "protein_name": "Peroxisome proliferator-activated receptor alpha", "gene_name": "pparaa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SYN5", "url": "https://www.uniprot.org/uniprotkb/Q7SYN5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.9192646", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Oct4-related PouV gene, pou5f3, mediates isthmus development in zebrafish by directly and dynamically regulating pax2a.", "journal": "Cells & development", "date": "2024-09", "authors": "Maekawa Masato, Saito Shinji, Isobe Daiki, Takemoto Kazumasa, Miura Yuhei, Dobashi Yurie, Yamasu Kyo", "reference": { "type": "PubMed", "id": "38908828", "url": "https://pubmed.ncbi.nlm.nih.gov/38908828" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90270-1", "protein_name": "POU domain, class 5, transcription factor 1", "gene_name": "pou5f1; 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Dev.", "date": "1995", "authors": "Hauptmann G, Gerster T", "reference": { "type": "PubMed", "id": "7669688", "url": "https://pubmed.ncbi.nlm.nih.gov/7669688" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90270-1", "protein_name": "POU domain, class 5, transcription factor 1", "gene_name": "pou5f1; pou5f3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q90270", "url": "https://www.uniprot.org/uniprotkb/Q90270" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.7669688", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel POU domain gene, zebrafish pou2: expression and roles of two alternatively spliced twin products in early development.", "journal": "Genes Dev.", "date": "1994", "authors": "Takeda H, Matsuzaki T, Oki T, Miyagawa T, Amanuma H", "reference": { "type": "PubMed", "id": "8288127", "url": "https://pubmed.ncbi.nlm.nih.gov/8288127" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90270-1", "protein_name": "POU domain, class 5, transcription factor 1", "gene_name": "pou5f1; pou5f3", "tax_name": "Zebrafish" } ], 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{ "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of zebrafish tbx1.", "journal": "Gene Expr. Patterns", "date": "2003", "authors": "Kochilas Lazaros K, Potluri Vijaya, Gitler Aaron, Balasubramanian Krithika, Chin Alvin J", "reference": { "type": "PubMed", "id": "12972000", "url": "https://pubmed.ncbi.nlm.nih.gov/12972000" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8AXX2-1", "protein_name": "T-box transcription factor TBX1", "gene_name": "tbx1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q8AXX2", "url": "https://www.uniprot.org/uniprotkb/Q8AXX2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12972000", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Vegetal localization of the maternal mRNA encoding an EDEN-BP/Bruno-like protein in zebrafish.", "journal": "Mech. Dev.", "date": "2000", "authors": "Suzuki H, Maegawa S, Nishibu T, Sugiyama T, Yasuda K, Inoue K", "reference": { "type": "PubMed", "id": "10781958", "url": "https://pubmed.ncbi.nlm.nih.gov/10781958" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9IBD0-1", "protein_name": "CUGBP Elav-like family member 1", "gene_name": "celf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9IBD1-1", "protein_name": "CUGBP Elav-like family member 3", "gene_name": "celf3a; celf3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9IBD0", "url": "https://www.uniprot.org/uniprotkb/Q9IBD0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10781958", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structures of tubulin acetyltransferase reveal a conserved catalytic core and the plasticity of the essential N terminus.", "journal": 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Med.", "date": "2021", "authors": "Schnur RE, Yousaf S, Liu J, Chung WK, Rhodes L, Marble M, Zambrano RM, Sobreira N, Jayakar P, Pierpont ME, Schultz MJ, Pichurin PN, Olson RJ, Graham GE, Osmond M, Contreras-Garcia GA, Campo-Neira KA, Penaloza-Mantilla CA, Flage M, Kuppa S, Navarro K, Sacoto MJG, Wentzensen IM, Scarano MI, Juusola J, Prada CE, Hufnagel RB", "reference": { "type": "PubMed", "id": "34040189", "url": "https://pubmed.ncbi.nlm.nih.gov/34040189" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SXG4-1", "protein_name": "SUMO-activating enzyme subunit 2", "gene_name": "uba2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9UBT2-1", "protein_name": "SUMO-activating enzyme subunit 2", "gene_name": "UBA2", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SXG4", "url": "https://www.uniprot.org/uniprotkb/Q7SXG4" } ], "common_name": "Zebrafish", "glygen_name": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hatching gland development and hatching in zebrafish embryos: A role for zinc and its transporters Zip10 and Znt1a.", "journal": "Biochemical and biophysical research communications", "date": "2020-08-06", "authors": "Muraina Issa A, Maret Wolfgang, Bury Nic R, Hogstrand Christer", "reference": { "type": "PubMed", "id": "32517868", "url": "https://pubmed.ncbi.nlm.nih.gov/32517868" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PEH9-1", "protein_name": "Zinc transporter ZIP10", "gene_name": "slc39a10", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PEH9", "url": "https://www.uniprot.org/uniprotkb/Q6PEH9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32517868", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Zinc Transporter SLC39A10 Plays an Essential Role in Embryonic Hematopoiesis.", "journal": "Advanced science (Weinheim, Baden-Wurttemberg, Germany)", "date": "2023-04-17", "authors": "He Xuyan, Ge Chaodong, Xia Jun, Xia Zhidan, Zhao Lu, Huang Sicong, Wang Rong, Pan Jianwei, Cheng Tao, Xu Peng-Fei, Wang Fudi, Min Junxia", "reference": { "type": "PubMed", "id": "37068188", "url": "https://pubmed.ncbi.nlm.nih.gov/37068188" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "fgfr3 and regionalization of anterior neural tube in zebrafish.", "journal": "Mech. Dev.", "date": "2001", "authors": "Sleptsova-Friedrich I, Li Y, Emelyanov A, Ekker M, Korzh V, Ge R", "reference": { "type": "PubMed", "id": "11287195", "url": "https://pubmed.ncbi.nlm.nih.gov/11287195" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I8X3-1", "protein_name": "Fibroblast growth factor receptor 3", "gene_name": "fgfr3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9I8X3", "url": "https://www.uniprot.org/uniprotkb/Q9I8X3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11287195", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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Biol. Evol.", "date": "2003", "authors": "Takezaki Naoko, Figueroa Felipe, Zaleska-Rutczynska Zofia, Klein Jan", "reference": { "type": "PubMed", "id": "12598696", "url": "https://pubmed.ncbi.nlm.nih.gov/12598696" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I8X3-1", "protein_name": "Fibroblast growth factor receptor 3", "gene_name": "fgfr3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A7B3-1", "protein_name": "Nucleoside diphosphate kinase", "gene_name": "nme2b.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9I8X3", "url": "https://www.uniprot.org/uniprotkb/Q9I8X3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12598696", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"Neuroglobins from the zebrafish Danio rerio and the pufferfish Tetraodon nigroviridis.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2001", "authors": "Awenius C, Hankeln T, Burmester T", "reference": { "type": "PubMed", "id": "11554744", "url": "https://pubmed.ncbi.nlm.nih.gov/11554744" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90YJ2-1", "protein_name": "Neuroglobin", "gene_name": "ngb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q90YJ2", "url": "https://www.uniprot.org/uniprotkb/Q90YJ2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11554744", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": 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Comp. Physiol. B", "date": "2011", "authors": "Tiedke Jessica, Gerlach Frank, Mitz Stephanie A, Hankeln Thomas, Burmester Thorsten", "reference": { "type": "PubMed", "id": "21614507", "url": "https://pubmed.ncbi.nlm.nih.gov/21614507" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90YJ2-1", "protein_name": "Neuroglobin", "gene_name": "ngb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q90YJ2", "url": "https://www.uniprot.org/uniprotkb/Q90YJ2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21614507", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Organic anion transporting polypeptides (OATP) in zebrafish (Danio rerio): Phylogenetic analysis and tissue distribution.", "journal": "Comp. Biochem. Physiol., Part A Mol. Integr. Physiol.", "date": "2010", "authors": "Popovic Marta, Zaja Roko, Smital Tvrtko", "reference": { "type": "PubMed", "id": "19931635", "url": "https://pubmed.ncbi.nlm.nih.gov/19931635" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PU70-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1d1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J4X4-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1f3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J631-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1f1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F2I7-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "LOC556735; slco5a1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LV73-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco3a1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NHT1-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1f2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8QFF0-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1f4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PU70", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PU70" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19931635", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tissue distribution and thyroid hormone effects on mRNA abundance for membrane transporters Mct8, Mct10, and organic anion-transporting polypeptides (Oatps) in a teleost fish.", "journal": "Comp. Biochem. Physiol., Part A Mol. Integr. Physiol.", "date": "2014", "authors": "Muzzio Amanda M, Noyes Pamela D, Stapleton Heather M, Lema Sean C", "reference": { "type": "PubMed", "id": "24113777", "url": "https://pubmed.ncbi.nlm.nih.gov/24113777" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PU70-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1d1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J4X4-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1f3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J631-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1f1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LV73-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco3a1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NHT1-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1f2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8QFF0-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1f4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PU70", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PU70" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24113777", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular characterization of zebrafish Oatp1d1 (Slco1d1), a novel organic anion-transporting polypeptide.", "journal": "J. Biol. Chem.", "date": "2013", "authors": "Popovic Marta, Zaja Roko, Fent Karl, Smital Tvrtko", "reference": { "type": "PubMed", "id": "24126916", "url": "https://pubmed.ncbi.nlm.nih.gov/24126916" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PU70-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1d1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PU70", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PU70" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24126916", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interaction of environmental contaminants with zebrafish organic anion transporting polypeptide, Oatp1d1 (Slco1d1).", "journal": "Toxicol. Appl. Pharmacol.", "date": "2014", "authors": "Popovic Marta, Zaja Roko, Fent Karl, Smital Tvrtko", "reference": { "type": "PubMed", "id": "25088042", "url": "https://pubmed.ncbi.nlm.nih.gov/25088042" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PU70-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1d1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PU70", "url": "https://www.uniprot.org/uniprotkb/A0A8M9PU70" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25088042", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish Oatp-mediated transport of microcystin congeners.", "journal": "Arch. Toxicol.", "date": "2016", "authors": "Steiner Konstanze, Zimmermann Lisa, Hagenbuch Bruno, Dietrich Daniel", "reference": { "type": "PubMed", "id": "26055554", "url": "https://pubmed.ncbi.nlm.nih.gov/26055554" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PU70-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1d1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J4X4-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1f3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J631-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1f1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NHT1-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1f2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8QFF0-1", "protein_name": "Solute 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ecotoxicological profiling of selected cyanobacterial strains using multi-endpoint effect-directed analysis.", "journal": "Ecotoxicology", "date": "2020", "authors": "Mari\u0107 P, Ahel M, Babi\u0107 O, Simeunovi\u0107 J, Smital T", "reference": { "type": "PubMed", "id": "32297059", "url": "https://pubmed.ncbi.nlm.nih.gov/32297059" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PU70-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1d1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G8S3-1", "protein_name": "POU domain protein", "gene_name": "pou2f1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9PU70", "url": 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Expression in the fmr1hu2787 Model of Fragile X Syndrome.", "journal": "Front. Genet.", "date": "2021", "authors": "Barthelson Karissa, Baer Lachlan, Dong Yang, Hand Melanie, Pujic Zac, Newman Morgan, Goodhill Geoffrey J, Richards Robert I, Pederson Stephen M, Lardelli Michael", "reference": { "type": "PubMed", "id": "34135935", "url": "https://pubmed.ncbi.nlm.nih.gov/34135935" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9PU70-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco1d1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q5G5-1", "protein_name": "Alpha-galactosidase", "gene_name": "gla", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A8P0-1", "protein_name": "Uncharacterized protein LOC321250 isoform 1", "gene_name": "cb421; sb:cb421; wu:fj98c11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9D7-1", "protein_name": "Uncharacterized protein LOC100034445", "gene_name": "znf1179", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Selective interaction of microcystin congeners with zebrafish (Danio rerio) Oatp1d1 transporter.", "journal": "Chemosphere", "date": "2021", "authors": "Mari\u0107 Petra, Ahel Marijan, Marakovi\u0107 Nikola, Lon\u010dar Jovica, Mihaljevi\u0107 Ivan, Smital Tvrtko", "reference": { "type": "PubMed", "id": "34182632", "url": "https://pubmed.ncbi.nlm.nih.gov/34182632" }, 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