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Neurobiol.", "date": "1999", "authors": "Seiler C, Nicolson T", "reference": { "type": "PubMed", "id": "10526320", "url": "https://pubmed.ncbi.nlm.nih.gov/10526320" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2BCE3-1", "protein_name": "AP complex subunit beta", "gene_name": "ap1b1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A193KX02-1", "protein_name": "Transmembrane O-methyltransferase homolog", "gene_name": "tomt", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M2BCE3", "url": "https://www.uniprot.org/uniprotkb/A0A8M2BCE3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10526320", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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Windster Jonathan D, Le Thuy Linh, Karim Anwarul, de Graaf Bianca M, van der Helm Robert, van Bever Yolande, Sloots Cornelius E J, Meeussen Conny, Tibboel Dick, de Klein Annelies, Wijnen Ren\u00e9 M H, Amiel Jeanne, Lyonnet Stanislas, Garcia-Barcelo Maria-Merc\u00e8, Tam Paul K H, Alves Maria M, Brooks Alice S, Hofstra Robert M W, Brosens Erwin", "reference": { "type": "PubMed", "id": "34358225", "url": "https://pubmed.ncbi.nlm.nih.gov/34358225" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2BCU2-1", "protein_name": "T-box transcription factor TBX2a isoform X1", "gene_name": "tbx2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M2BCU2", "url": "https://www.uniprot.org/uniprotkb/A0A8M2BCU2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34358225", "abstract": "", "glycosylation": 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Rep.", "date": "2021", "authors": "Ogawa Yohey, Corbo Joseph C", "reference": { "type": "PubMed", "id": "34462505", "url": "https://pubmed.ncbi.nlm.nih.gov/34462505" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2BCU2-1", "protein_name": "T-box transcription factor TBX2a isoform X1", "gene_name": "tbx2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUD3-1", "protein_name": "Recoverin 3", "gene_name": "rcvrn3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PI84-1", "protein_name": "Myelin protein zero-like protein 2b precursor", "gene_name": "mpzl2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FEW4-1", "protein_name": "Calcium-binding protein 5a", "gene_name": "cabp5a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F1F5-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "gngt2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DH55-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3a", "gene_name": "gnb3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PBN9-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "gngt1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N7UZP3-1", "protein_name": "Guanylyl cyclase-activating protein 1", "gene_name": "guca1aa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M2BCU2", "url": "https://www.uniprot.org/uniprotkb/A0A8M2BCU2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34462505", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein tyrosine phosphatase receptor-zeta1 deletion triggers defective heart morphogenesis in mice and zebrafish.", "journal": "Am. 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Physiol.", "date": "2022", "authors": "Katraki-Pavlou S, Kastana P, Bousis D, Ntenekou D, Varela A, Davos CH, Nikou S, Papadaki E, Tsigkas G, Athanasiadis E, Herradon G, Mikelis CM, Beis D, Papadimitriou E", "reference": { "type": "PubMed", "id": "34767486", "url": "https://pubmed.ncbi.nlm.nih.gov/34767486" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2BCU2-1", "protein_name": "T-box transcription factor TBX2a isoform X1", "gene_name": "tbx2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PA62-1", "protein_name": "T-box transcription factor TBX18", "gene_name": "tbx18", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M2BCU2", "url": "https://www.uniprot.org/uniprotkb/A0A8M2BCU2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34767486", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "erbb3 and erbb2 are essential for schwann cell migration and myelination in zebrafish.", "journal": "Curr. 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protein kinase A catalytic subunit alpha (PKACalpha) and X-linked protein kinase (PRKX).", "journal": "J. Biol. Chem.", "date": "2014", "authors": "Ouyang Chuan, Nie Li, Gu Meidi, Wu Ailing, Han Xu, Wang Xiaojian, Shao Jianzhong, Xia Zongping", "reference": { "type": "PubMed", "id": "25028512", "url": "https://pubmed.ncbi.nlm.nih.gov/25028512" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M3AT57-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 7", "gene_name": "map3k7", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M3AT57", "url": "https://www.uniprot.org/uniprotkb/A0A8M3AT57" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25028512", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The spatial-temporal expression and functional divergence of bach homologs in zebrafish Danio rerio.", "journal": "J. Fish Biol.", "date": "2016", "authors": "Luo Q, Wu C, Sun S, Lu F, Xie L, Zhao H, Zhong X, Zhou Q", "reference": { "type": "PubMed", "id": "26992035", "url": "https://pubmed.ncbi.nlm.nih.gov/26992035" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M3AT57-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 7", "gene_name": "map3k7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A814-1", "protein_name": "Transcription regulator protein BACH1b isoform 1", "gene_name": "bach1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T1F9-1", "protein_name": "Transcription regulator protein BACH1a isoform X1", "gene_name": "bach1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7EYY9-1", "protein_name": "Glycoprotein endo-alpha-1,2-mannosidase", "gene_name": "manea", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WGA9-1", "protein_name": "Nesprin-3", "gene_name": "syne3", "tax_name": "Zebrafish" }, { 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Commun.", "date": "2007", "authors": "O'Boyle Shaun, Bree Ronan T, McLoughlin Sarah, Grealy Maura, Byrnes Lucy", "reference": { "type": "PubMed", "id": "17490614", "url": "https://pubmed.ncbi.nlm.nih.gov/17490614" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5U3V9-1", "protein_name": "Vacuolar-sorting protein SNF8", "gene_name": "snf8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BFD8-1", "protein_name": "3.1.26.4; Thy-1 membrane glycoprotein precursor", "gene_name": "thy1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QSB8-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "ddx42", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PBR5-1", "protein_name": "V-type proton ATPase subunit G", "gene_name": "atp6v1g1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6P4U7-1", "protein_name": "Translocating chain-associated membrane protein", "gene_name": "tram1", "tax_name": "Zebrafish" } ], 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moonshine gene encodes transcriptional intermediary factor 1gamma, an essential regulator of hematopoiesis.", "journal": "PLoS biology", "date": "2004-08", "authors": "Ransom David G, Bahary Nathan, Niss Knut, Traver David, Burns Caroline, Trede Nikolaus S, Paffett-Lugassy Noelle, Saganic Walter J, Lim C Anthoney, Hersey Candace, Zhou Yi, Barut Bruce A, Lin Shuo, Kingsley Paul D, Palis James, Orkin Stuart H, Zon Leonard I", "reference": { "type": "PubMed", "id": "15314655", "url": "https://pubmed.ncbi.nlm.nih.gov/15314655" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6E2N3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM33", "gene_name": "trim33", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q99PP7-1", "protein_name": "E3 ubiquitin-protein ligase TRIM33", "gene_name": "Trim33", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9QFU4-1", "protein_name": "V-myb avian myeloblastosis viral oncogene homolog-like 2a", "gene_name": "mybl2a", 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hindbrain segmentation.", "journal": "Development (Cambridge, England)", "date": "1996-12", "authors": "Moens C B, Yan Y L, Appel B, Force A G, Kimmel C B", "reference": { "type": "PubMed", "id": "9012518", "url": "https://pubmed.ncbi.nlm.nih.gov/9012518" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q98UK5-1", "protein_name": "Transcription factor MafB", "gene_name": "mafba; mafb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P50574-1", "protein_name": "Homeobox protein Dlx2a", "gene_name": "dlx2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P7P8-1", "protein_name": "Neuromodulin", "gene_name": "gap43", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q98UK5", "url": "https://www.uniprot.org/uniprotkb/Q98UK5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.9012518", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNA expression profiles and data mining of sugarcane response to low temperature.", "journal": "Plant Physiol.", "date": "2003", "authors": "Nogueira F\u00e1bio T S, De Rosa Vicente E, Menossi Marcelo, Ulian Eug\u00eanio C, Arruda Paulo", "reference": { "type": "PubMed", "id": "12913139", "url": "https://pubmed.ncbi.nlm.nih.gov/12913139" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SZK7-1", "protein_name": "Centriole and centriolar satellite protein ofd1", "gene_name": "ofd1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SZK7", "url": "https://www.uniprot.org/uniprotkb/Q7SZK7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12913139", "abstract": "", "glycosylation": [], "mutagenesis": 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Invest.", "date": "2014", "authors": "Liu YP, Tsai IC, Morleo M, Oh EC, Leitch CC, Massa F, Lee BH, Parker DS, Finley D, Zaghloul NA, Franco B, Katsanis N", "reference": { "type": "PubMed", "id": "24691443", "url": "https://pubmed.ncbi.nlm.nih.gov/24691443" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SZK7-1", "protein_name": "Centriole and centriolar satellite protein ofd1", "gene_name": "ofd1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SZK7", "url": "https://www.uniprot.org/uniprotkb/Q7SZK7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24691443", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of the FGF receptor 2 gene (fgfr2) during embryogenesis in the zebrafish Danio rerio.", "journal": "Mech. Dev. 119 Suppl", "date": "2002", "authors": "Tonou-Fujimori Noriko, Takahashi Masayoshi, Onodera Hiroshi, Kikuta Hiroshi, Koshida Sumito, Takeda Hiroyuki, Yamasu Kyo", "reference": { "type": "PubMed", "id": "14516681", "url": "https://pubmed.ncbi.nlm.nih.gov/14516681" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8JG38-1", "protein_name": "Fibroblast growth factor receptor 2", "gene_name": "fgfr2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9I8X3-1", "protein_name": "Fibroblast growth factor receptor 3", "gene_name": "fgfr3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q8JG38", "url": "https://www.uniprot.org/uniprotkb/Q8JG38" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.14516681", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"protein_name": "protein-tyrosine-phosphatase", "gene_name": "ptprb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T813-1", "protein_name": "Roundabout homolog 1 isoform X1", "gene_name": "robo1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H752-1", "protein_name": "Slit homolog 3 protein isoform X1", "gene_name": "slit3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q8JG38", "url": "https://www.uniprot.org/uniprotkb/Q8JG38" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36910471", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Fgf22 and Fgfr2b are required for neurogenesis and gliogenesis in the zebrafish forebrain.", "journal": "Biochem. 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of facial branchiomotor neurons but not for their survival.", "journal": "Dev. Dyn.", "date": "2005", "authors": "Cooper Kimberly L, Armstrong Juli, Moens Cecilia B", "reference": { "type": "PubMed", "id": "16193504", "url": "https://pubmed.ncbi.nlm.nih.gov/16193504" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DDT5-1", "protein_name": "Transcription elongation factor SPT5", "gene_name": "supt5h", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9DDT5", "url": "https://www.uniprot.org/uniprotkb/Q9DDT5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16193504", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Dev.", "date": "2017", "authors": "Zhang Dawei, Wang Jing, Zhou Chi, Xiao Wuhan", "reference": { "type": "PubMed", "id": "28132765", "url": "https://pubmed.ncbi.nlm.nih.gov/28132765" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7T3E5-1", "protein_name": "Kynurenine--oxoglutarate transaminase 3", "gene_name": "kyat3.2; kyat3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N7UYU6-1", "protein_name": "Cerebellin 13 precursor", "gene_name": "cbln13", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5N8-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "apoa4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFY9-1", "protein_name": "Somatostatin-2", "gene_name": "sst1.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7T3E5", "url": "https://www.uniprot.org/uniprotkb/Q7T3E5" } ], "common_name": "Zebrafish", "glygen_name": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of zebrafish smad1, smad2 and smad5: the amino-terminus of smad1 and smad5 is required for specific function in the embryo.", "journal": "Mechanisms of development", "date": "1999-10", "authors": "M\u00fcller F, Blader P, Rastegar S, Fischer N, Kn\u00f6chel W, Str\u00e4hle U", "reference": { "type": "PubMed", "id": "10525190", "url": "https://pubmed.ncbi.nlm.nih.gov/10525190" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I9P9-1", "protein_name": "SMAD family member 2", "gene_name": "smad2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9I8V2-1", "protein_name": "SMAD family member 1", "gene_name": "smad1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9W7E7-1", "protein_name": "SMAD family member 5", "gene_name": "smad5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9I9P9", "url": "https://www.uniprot.org/uniprotkb/Q9I9P9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10525190", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of zebrafish smad2, smad3 and smad4.", "journal": "Gene", "date": "2000-04-04", "authors": "Dick A, Mayr T, Bauer H, Meier A, Hammerschmidt M", "reference": { "type": "PubMed", "id": "10767528", "url": "https://pubmed.ncbi.nlm.nih.gov/10767528" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I9P9-1", "protein_name": "SMAD family member 2", "gene_name": "smad2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z2Y5-1", "protein_name": "Mothers against decapentaplegic homolog", "gene_name": "smad4a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9I9P9", "url": "https://www.uniprot.org/uniprotkb/Q9I9P9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10767528", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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