[ { "title": "Hrg1 promotes heme-iron recycling during hemolysis in the zebrafish kidney.", "journal": "PLoS genetics", "date": "2018-09", "authors": "Zhang Jianbing, Chambers Ian, Yun Sijung, Phillips John, Krause Michael, Hamza Iqbal", "reference": { "type": "PubMed", "id": "30248094", "url": "https://pubmed.ncbi.nlm.nih.gov/30248094" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6ZM28-1", "protein_name": "Heme transporter hrg1-B", "gene_name": "slc48a1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7T3B2-1", "protein_name": "Heme transporter hrg1-A", "gene_name": "slc48a1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6ZM28", "url": "https://www.uniprot.org/uniprotkb/Q6ZM28" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30248094", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular phylogeny and functional genomics of beta-galactoside alpha2,6-sialyltransferases that explain ubiquitous expression of st6gal1 gene in amniotes.", "journal": "J. Biol. Chem.", "date": "2010", "authors": "Petit Daniel, Mir Anne-Marie, Petit Jean-Michel, Thisse Christine, Delannoy Philippe, Oriol Rafael, Thisse Bernard, Harduin-Lepers Anne", "reference": { "type": "PubMed", "id": "20855889", "url": "https://pubmed.ncbi.nlm.nih.gov/20855889" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q701R2-1", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2", "gene_name": "st6gal2a; st6gal2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q701R2", "url": "https://www.uniprot.org/uniprotkb/Q701R2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20855889", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of sax1/nkx1.2 and sax2/nkx1.1 in zebrafish.", "journal": "Gene Expr. 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Toxicol.", "date": "2008", "authors": "Hoffmann J L, Thomason R G, Lee D M, Brill J L, Price B B, Carr G J, Versteeg D J", "reference": { "type": "PubMed", "id": "18339436", "url": "https://pubmed.ncbi.nlm.nih.gov/18339436" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SY29-1", "protein_name": "Glucose-6-phosphate exchanger SLC37A2", "gene_name": "slc37a2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZT42-1", "protein_name": "Staphylococcal nuclease domain-containing protein 1", "gene_name": "snd1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N3S3-1", "protein_name": "NADP-retinol dehydrogenase", "gene_name": "rdh12l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LXR3-1", "protein_name": "Ribosome-binding protein 1b", "gene_name": "rrbp1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q801V3-1", "protein_name": "Antizyme inhibitor 1b", "gene_name": "azin1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DGK2-1", "protein_name": "L-lactate dehydrogenase B-B chain", "gene_name": "ldhbb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SY29", "url": "https://www.uniprot.org/uniprotkb/Q7SY29" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18339436", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Clearance by Microglia Depends on Packaging of Phagosomes into a Unique Cellular Compartment.", "journal": "Dev. 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Commun.", "date": "2024", "authors": "Zareba Joanna, Cattaneo Elena F, Villani Ambra, Othman Alaa, Streb Sebastian, Peri Francesca", "reference": { "type": "PubMed", "id": "39366931", "url": "https://pubmed.ncbi.nlm.nih.gov/39366931" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SY29-1", "protein_name": "Glucose-6-phosphate exchanger SLC37A2", "gene_name": "slc37a2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8Q2J0-1", "protein_name": "NPC intracellular cholesterol transporter 1 isoform X1", "gene_name": "npc1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GJC9-1", "protein_name": "Interleukin-1", "gene_name": "il1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SY29", "url": "https://www.uniprot.org/uniprotkb/Q7SY29" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and expression of the quaking gene in the zebrafish embryo.", "journal": "Mech. Dev.", "date": "1997", "authors": "Tanaka H, Abe K, Kim C H", "reference": { "type": "PubMed", "id": "9486543", "url": "https://pubmed.ncbi.nlm.nih.gov/9486543" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6P0D0-1", "protein_name": "Protein quaking-A", "gene_name": "qkia", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6P0D0", "url": "https://www.uniprot.org/uniprotkb/Q6P0D0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.9486543", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zinc transporter LIVI controls epithelial-mesenchymal transition in zebrafish gastrula organizer.", "journal": "Nature", "date": "2004-05-20", "authors": "Yamashita Susumu, Miyagi Chiemi, Fukada Toshiyuki, Kagara Naofumi, Che Yong-Suk, Hirano Toshio", "reference": { "type": "PubMed", "id": "15129296", "url": "https://pubmed.ncbi.nlm.nih.gov/15129296" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6L8F3-1", "protein_name": "Zinc transporter ZIP6", "gene_name": "slc39a6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, 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"Cadherin-catenin complexes during zebrafish oogenesis: heterotypic junctions between oocytes and follicle cells.", "journal": "Biol. Reprod.", "date": "1999", "authors": "Cerd\u00e0 J, Reidenbach S, Pr\u00e4tzel S, Franke W W", "reference": { "type": "PubMed", "id": "10456847", "url": "https://pubmed.ncbi.nlm.nih.gov/10456847" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90275-1", "protein_name": "Cadherin-2", "gene_name": "cdh2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q90Z37-1", "protein_name": "Cadherin-1", "gene_name": "cdh1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9PVF7-1", "protein_name": "Junction plakoglobin a", "gene_name": "jupa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9PVF8-1", "protein_name": "Catenin alpha-1", "gene_name": "ctnna1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGH7-1", "protein_name": "Catenin beta-1", "gene_name": "ctnnb1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q90275", "url": "https://www.uniprot.org/uniprotkb/Q90275" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10456847", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential expression of cadherin-2 and cadherin-4 in the developing and adult zebrafish visual system.", "journal": "Vis. 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Patterns", "date": "2003", "authors": "Liu Q, Ensign R D, Azodi E", "reference": { "type": "PubMed", "id": "12972001", "url": "https://pubmed.ncbi.nlm.nih.gov/12972001" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90275-1", "protein_name": "Cadherin-2", "gene_name": "cdh2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q90Z37-1", "protein_name": "Cadherin-1", "gene_name": "cdh1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q90275", "url": "https://www.uniprot.org/uniprotkb/Q90275" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12972001", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ 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"glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30361324", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An adhesion code ensures robust pattern formation during tissue morphogenesis.", "journal": "Science (New York, N.Y.)", "date": "2020-10-02", "authors": "Tsai Tony Y-C, Sikora Mateusz, Xia Peng, Colak-Champollion Tugba, Knaut Holger, Heisenberg Carl-Philipp, Megason Sean G", "reference": { "type": "PubMed", "id": "33004519", "url": "https://pubmed.ncbi.nlm.nih.gov/33004519" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90275-1", "protein_name": "Cadherin-2", "gene_name": "cdh2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QEL7-1", "protein_name": "Cadherin-15 precursor", "gene_name": "cdh15", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6K1-1", "protein_name": "Protocadherin 1 gamma 32", "gene_name": "pcdh1g32", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6M5-1", "protein_name": "Protocadherin 1 gamma 26", "gene_name": "pcdh1g26", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N488-1", "protein_name": "Protocadherin 1 gamma c 5 precursor", "gene_name": "pcdh1gc5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6A8-1", 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"uniprot_canonical_ac": "A0A8M1N6Q0-1", "protein_name": "Protocadherin 1 gamma 11 precursor", "gene_name": "pcdh1g11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6Q5-1", "protein_name": "Protocadherin 1 gamma 31 precursor", "gene_name": "pcdh1g31", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F8W3X3-1", "protein_name": "Protocadherin-19", "gene_name": "pcdh19", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q90275", "url": "https://www.uniprot.org/uniprotkb/Q90275" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33004519", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure and distribution of N-cadherin in developing zebrafish embryos: morphogenetic effects of ectopic over-expression.", "journal": "Dev. Dyn.", "date": "1994", "authors": "Bitzur S, Kam Z, Geiger B", "reference": { "type": "PubMed", "id": "7873785", "url": "https://pubmed.ncbi.nlm.nih.gov/7873785" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90275-1", "protein_name": "Cadherin-2", "gene_name": "cdh2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q90275", "url": "https://www.uniprot.org/uniprotkb/Q90275" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.7873785", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Ribosome Biogenesis Factor Ltv1 Is Essential for Digestive Organ Development and Definitive Hematopoiesis in Zebrafish.", "journal": "Frontiers in cell and developmental biology", "date": "2021", "authors": "Zhang Chong, Huang Rui, Ma Xirui, Chen Jiehui, Han Xinlu, Li Li, Luo Lingfei, Ruan Hua, Huang Honghui", "reference": { "type": "PubMed", "id": "34692673", "url": "https://pubmed.ncbi.nlm.nih.gov/34692673" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5U3J8-1", "protein_name": "Protein LTV1 homolog", "gene_name": "ltv1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5U3J8", "url": "https://www.uniprot.org/uniprotkb/Q5U3J8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34692673", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NINL and DZANK1 Co-function in Vesicle Transport and Are Essential for Photoreceptor Development in Zebrafish.", "journal": "PLoS genetics", "date": "2015-10", "authors": "Dona Margo, Bachmann-Gagescu Ruxandra, Texier Yves, Toedt Grischa, Hetterschijt Lisette, Tonnaer Edith L, Peters Theo A, van Beersum Sylvia E C, Bergboer Judith G M, Horn Nicola, de Vrieze Erik, Slijkerman Ralph W N, van Reeuwijk Jeroen, Flik Gert, Keunen Jan E, Ueffing Marius, Gibson Toby J, Roepman Ronald, Boldt Karsten, Kremer Hannie, van Wijk Erwin", "reference": { "type": "PubMed", "id": "26485514", "url": "https://pubmed.ncbi.nlm.nih.gov/26485514" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "G9G127-1", "protein_name": "Ninein-like protein", "gene_name": "Ninl; ninl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LXR6-1", "protein_name": "Double zinc ribbon and ankyrin repeat-containing protein 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Microtubule Severing Protein Fignl2 Contributes to Endothelial and Neuronal Branching in Zebrafish Development.", "journal": "Frontiers in cell and developmental biology", "date": "2020", "authors": "Dong Zhangji, Chen Xu, Li Yuanyuan, Zhuo Run, Lai Xiaona, Liu Mei", "reference": { "type": "PubMed", "id": "33585441", "url": "https://pubmed.ncbi.nlm.nih.gov/33585441" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E9QEA3-1", "protein_name": "Fidgetin-like protein 2", "gene_name": "fignl2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "E9QEA3", "url": "https://www.uniprot.org/uniprotkb/E9QEA3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33585441", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Perp is required for tissue-specific cell survival during zebrafish development.", "journal": "Cell death and differentiation", "date": "2005-01", "authors": "Nowak M, K\u00f6ster C, Hammerschmidt M", "reference": { "type": "PubMed", "id": "15529176", "url": "https://pubmed.ncbi.nlm.nih.gov/15529176" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "E9QHT9-1", "protein_name": "p53 apoptosis effector related to PMP-22", "gene_name": "perp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P79734-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "tp53", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PDZ4-1", "protein_name": "Beta-crystallin B1", "gene_name": "crybb1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "E9QHT9", "url": "https://www.uniprot.org/uniprotkb/E9QHT9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15529176", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "THOC1 deficiency leads to late-onset nonsyndromic hearing loss through p53-mediated hair cell apoptosis.", "journal": "PLoS genetics", "date": "2020", "authors": "Zhang L, Gao Y, Zhang R, Sun F, Cheng C, Qian F, Duan X, Wei G, Sun C, Pang X, Chen P, Chai R, Yang T, Wu H, Liu D", "reference": { "type": "PubMed", "id": "32776944", "url": "https://pubmed.ncbi.nlm.nih.gov/32776944" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7SYB2-1", "protein_name": "THO complex subunit 1", "gene_name": "thoc1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8R3N6-1", "protein_name": "THO complex subunit 1", "gene_name": "Thoc1", "tax_name": "Mouse" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7SYB2", "url": "https://www.uniprot.org/uniprotkb/Q7SYB2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32776944", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning of a cold-shock domain protein, zfY1, in zebrafish embryo.", "journal": "Biochim. Biophys. Acta", "date": "1999", "authors": "Chang B E, Lin C Y, Kuo C M", "reference": { "type": "PubMed", "id": "10446383", "url": "https://pubmed.ncbi.nlm.nih.gov/10446383" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B5DE31-1", "protein_name": "Y-box-binding protein 1", "gene_name": "ybx1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8HAM3-1", "protein_name": "Serum response factor", "gene_name": "srfa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "B5DE31", "url": "https://www.uniprot.org/uniprotkb/B5DE31" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10446383", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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Anim. Sci. 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Rep.", "date": "2018", "authors": "Roberto V\u00e2nia Palma, Gavaia Paulo, Nunes Maria Jo\u00e3o, Rodrigues Elsa, Cancela Maria Leonor, Tiago Daniel Martins", "reference": { "type": "PubMed", "id": "29487295", "url": "https://pubmed.ncbi.nlm.nih.gov/29487295" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5RHR9-1", "protein_name": "Dynamin-2", "gene_name": "dnm3a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5RHR9", "url": "https://www.uniprot.org/uniprotkb/Q5RHR9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29487295", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Endocytic Adaptor Protein Tollip Inhibits Canonical Wnt Signaling.", "journal": "PLoS ONE", "date": "2015", "authors": "Toru\u0144 Anna, Szyma\u0144ska Ewelina, Castanon Irinka, Woli\u0144ska-Nizio\u0142 Lidia, Bartosik Anna, Jastrz\u0119bski Kamil, Mi\u0119tkowska Magdalena, Gonz\u00e1lez-Gait\u00e1n Marcos, Miaczynska Marta", "reference": { "type": "PubMed", "id": "26110841", "url": "https://pubmed.ncbi.nlm.nih.gov/26110841" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization and expression analysis of Toll-interacting protein in common carp, Cyprinus carpio L., responding to bacterial and viral challenge.", "journal": "Springerplus", "date": "2016", "authors": "Shan Shijuan, Wang Lei, Zhang Fumiao, Zhu Yaoyao, An Liguo, Yang Guiwen", "reference": { "type": "PubMed", "id": "27330905", "url": "https://pubmed.ncbi.nlm.nih.gov/27330905" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZV43-1", "protein_name": "Toll-interacting protein", "gene_name": "tollip", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7ZV43", "url": "https://www.uniprot.org/uniprotkb/Q7ZV43" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" 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"Woli\u0144ska-Nizio\u0142 Lidia, Romaniuk Karolina, Wojciechowska Karolina, Surga Krzysztof, Kamaszewski Maciej, Szudrowicz Hubert, Mi\u0105czy\u0144ska Marta", "reference": { "type": "PubMed", "id": "35506194", "url": "https://pubmed.ncbi.nlm.nih.gov/35506194" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZV43-1", "protein_name": "Toll-interacting protein", "gene_name": "tollip", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7ZV43", "url": "https://www.uniprot.org/uniprotkb/Q7ZV43" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35506194", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Strip1 regulates retinal ganglion cell survival by suppressing Jun-mediated apoptosis to promote retinal neural circuit formation.", "journal": "Elife", "date": "2022", "authors": "Ahmed Mai, Kojima Yutaka, Masai Ichiro", "reference": { "type": "PubMed", "id": "35314028", "url": "https://pubmed.ncbi.nlm.nih.gov/35314028" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q803T2-1", "protein_name": "Striatin-interacting protein 1 homolog", "gene_name": "strip1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q803T2", "url": "https://www.uniprot.org/uniprotkb/Q803T2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35314028", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Composition and evolution of the vertebrate and mammalian selenoproteomes.", "journal": "PLoS ONE", "date": "2012", "authors": "Mariotti Marco, Ridge Perry G, Zhang Yan, Lobanov Alexei V, Pringle Thomas H, Guigo Roderic, Hatfield Dolph L, Gladyshev Vadim N", "reference": { "type": "PubMed", "id": "22479358", "url": "https://pubmed.ncbi.nlm.nih.gov/22479358" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q802G7-1", "protein_name": "Selenoprotein M", "gene_name": "Selenom; selenom", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JLM0-1", "protein_name": "Choline/ethanolaminephosphotransferase 1", "gene_name": "cept1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q98SV0-1", "protein_name": "Selenoprotein Pb", "gene_name": "selenop2; sepp1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QTD7-1", "protein_name": "Glutathione peroxidase", "gene_name": "gpx9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ABD8ERX7-1", "protein_name": "1.8.4.12; 1.8.4.14; Methionine-R-sulfoxide reductase B1-A", "gene_name": "msrb1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NBG2-1", "protein_name": "Peroxiredoxin-like 2A", "gene_name": "selenou1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N743-1", "protein_name": "Glutathione peroxidase", "gene_name": "gpx4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NEL1-1", "protein_name": "1.8.4.14; Methionine-R-sulfoxide reductase B1b", "gene_name": "msrb1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NIR5-1", "protein_name": "Glutathione peroxidase", "gene_name": "gpx3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NUZ2-1", "protein_name": "Selenoprotein J", "gene_name": "selenoj", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P5M3-1", "protein_name": "Selenoprotein O", "gene_name": "selenoo2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PAB3-1", "protein_name": "Ethanolaminephosphotransferase 1", "gene_name": "selenoi", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q98SV1-1", "protein_name": "Selenoprotein Pa", "gene_name": "selenop; sepp1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PBP3-1", "protein_name": "Peroxiredoxin-like 2A", "gene_name": "prxl2a; selenou1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PAF3-1", "protein_name": "Glutathione peroxidase", "gene_name": "gpx4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PAE4-1", "protein_name": "Selenoprotein H", "gene_name": "selenoh", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PAJ9-1", "protein_name": "Glutathione peroxidase", "gene_name": "gpx2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PCD1-1", "protein_name": "thioredoxin-disulfide reductase (NADPH)", "gene_name": "txnrd3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": 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Commun.", "date": "2023", "authors": "Schoenmakers Erik, Marelli Federica, J\u00f8rgensen Helle F, Visser W Edward, Moran Carla, Groeneweg Stefan, Avalos Carolina, Jurgens Sean J, Figg Nichola, Finigan Alison, Wali Neha, Agostini Maura, Wardle-Jones Hannah, Lyons Greta, Rusk Rosemary, Gopalan Deepa, Twiss Philip, Visser Jacob J, Goddard Martin, Nashef Samer A M, Heijmen Robin, Clift Paul, Sinha Sanjay, Pirruccello James P, Ellinor Patrick T, Busch-Nentwich Elisabeth M, Ramirez-Solis Ramiro, Murphy Michael P, Persani Luca, Bennett Martin, Chatterjee Krishna", "reference": { "type": "PubMed", "id": "38042913", "url": "https://pubmed.ncbi.nlm.nih.gov/38042913" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q802G7-1", "protein_name": "Selenoprotein M", "gene_name": "Selenom; selenom", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q98SV0-1", "protein_name": "Selenoprotein Pb", "gene_name": "selenop2; sepp1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H6L3-1", "protein_name": "Caspase-3", "gene_name": "casp3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N743-1", "protein_name": "Glutathione peroxidase", "gene_name": "gpx4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P485-1", "protein_name": "Iodothyronine deiodinase", "gene_name": "dio3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q98SV1-1", "protein_name": "Selenoprotein Pa", "gene_name": "selenop; sepp1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N295-1", "protein_name": "Glutathione peroxidase", "gene_name": "gpx1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PAF3-1", "protein_name": "Glutathione peroxidase", "gene_name": "gpx4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P8S9-1", "protein_name": "Iodothyronine deiodinase", "gene_name": "dio1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PAE4-1", "protein_name": "Selenoprotein H", "gene_name": "selenoh", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PCD1-1", "protein_name": "thioredoxin-disulfide reductase (NADPH)", "gene_name": "txnrd3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3F5-1", "protein_name": "thioredoxin-disulfide reductase (NADPH)", "gene_name": "txnrd2.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q802G7", "url": "https://www.uniprot.org/uniprotkb/Q802G7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38042913", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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}, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"protein_name": "Interferon-induced GTP-binding protein MxE", "gene_name": "mxe", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q800G8-1", "protein_name": "Interferon-induced GTP-binding protein MxB", "gene_name": "mxb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DKF0-1", "protein_name": "Interferon-induced GTP-binding protein MxC", "gene_name": "mxc", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8JH68-1", "protein_name": "Interferon-induced GTP-binding protein MxA", "gene_name": "mxa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PF76-1", "protein_name": "Interferon phi 1 precursor", "gene_name": "ifnphi1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q800G5", "url": "https://www.uniprot.org/uniprotkb/Q800G5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12869211", 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Biol.", "date": "2006", "authors": "Ramasamy Srinivas, Wang Hui, Quach Helen Ngoc Bao, Sampath Karuna", "reference": { "type": "PubMed", "id": "16513105", "url": "https://pubmed.ncbi.nlm.nih.gov/16513105" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZW47-1", "protein_name": "Double-stranded RNA-binding protein Staufen homolog 2", "gene_name": "stau2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JQK6-1", "protein_name": "Double-stranded RNA-binding protein Staufen homolog 1", "gene_name": "stau1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7ZW47", "url": "https://www.uniprot.org/uniprotkb/Q7ZW47" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16513105", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Prematurely terminated intron-retaining mRNAs invade axons in SFPQ null-driven neurodegeneration and are a hallmark of ALS.", "journal": "Nat. Commun.", "date": "2022", "authors": "Taylor Richard, Hamid Fursham, Fielding Triona, Gordon Patricia M, Maloney Megan, Makeyev Eugene V, Houart Corinne", "reference": { "type": "PubMed", "id": "36414621", "url": "https://pubmed.ncbi.nlm.nih.gov/36414621" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZW47-1", "protein_name": "Double-stranded RNA-binding protein Staufen homolog 2", "gene_name": "stau2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IWI1-1", "protein_name": "Transcription factor COE1-A", "gene_name": "ebf1a; ebf3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9P377-1", "protein_name": "Glutamate receptor", "gene_name": "gria4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WBB9-1", "protein_name": "RNA-binding protein Nova-2", "gene_name": "nova2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PEX4-1", "protein_name": "Splicing factor, proline- and glutamine-rich", "gene_name": "sfpq", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7ZW47", "url": "https://www.uniprot.org/uniprotkb/Q7ZW47" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36414621", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "[Expression pattern of polycomb gene Nspc1 at the early developmental stage in zebrafish].", "journal": "Zhongguo yi xue ke xue yuan xue bao. Acta Academiae Medicinae Sinicae", "date": "2008-10", "authors": "Wu Xu-Dong, Zhang Min, Gong Yan-Hua, Qiang Bo-Qin, Yuan Jian-Gang, Meng An-Ming, Peng Xiao-Zhong", "reference": { "type": "PubMed", "id": "19024384", "url": "https://pubmed.ncbi.nlm.nih.gov/19024384" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZYZ7-1", "protein_name": "Polycomb group RING finger protein 1", "gene_name": "pcgf1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7ZYZ7", "url": "https://www.uniprot.org/uniprotkb/Q7ZYZ7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19024384", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Polycomb Group Protein Pcgf1 Is Dispensable in Zebrafish but Involved in Early Growth and Aging.", "journal": "PloS one", "date": "2016", "authors": "Dupret Barbara, V\u00f6lkel Pamela, Le Bourhis Xuefen, Angrand Pierre-Olivier", "reference": { "type": "PubMed", "id": "27442247", "url": "https://pubmed.ncbi.nlm.nih.gov/27442247" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZYZ7-1", "protein_name": "Polycomb group RING finger protein 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genome-wide suppressor screen identifies USP35/USP38 as therapeutic candidates for ciliopathies.", "journal": "JCI Insight", "date": "2019", "authors": "Tsai IC, Adams KA, Tzeng JA, Shennib O, Tan PL, Katsanis N", "reference": { "type": "PubMed", "id": "31723061", "url": "https://pubmed.ncbi.nlm.nih.gov/31723061" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZUH1-1", "protein_name": "tRNA-splicing ligase complex subunit RTRAF", "gene_name": "rtraf", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7EXH4-1", "protein_name": "BBSome complex member BBS4", "gene_name": "bbs4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WCA3-1", "protein_name": "Testis-expressed protein 36", "gene_name": "tex36", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NXI2-1", "protein_name": "Ectonucleotide 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multiple SNc domains from pea seedlings: cellular localization, partial characterization, sequence analysis, and phylogenetic relationships.", "journal": "J. Exp. Bot.", "date": "2003", "authors": "Abe Shunnosuke, Sakai Masako, Yagi Kosaku, Hagino Takehiko, Ochi Katsumasa, Shibata Koichi, Davies Eric", "reference": { "type": "PubMed", "id": "12598568", "url": "https://pubmed.ncbi.nlm.nih.gov/12598568" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZT42-1", "protein_name": "Staphylococcal nuclease domain-containing protein 1", "gene_name": "snd1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7ZT42", "url": "https://www.uniprot.org/uniprotkb/Q7ZT42" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12598568", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Biotechnol.", "date": "2005", "authors": "Abe Shunnosuke, Wang Pi-Lin, Takahashi Fuminori, Sasaki Eiji", "reference": { "type": "PubMed", "id": "16132464", "url": "https://pubmed.ncbi.nlm.nih.gov/16132464" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZT42-1", "protein_name": "Staphylococcal nuclease domain-containing protein 1", "gene_name": "snd1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7ZT42", "url": "https://www.uniprot.org/uniprotkb/Q7ZT42" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16132464", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A Tudor staphylococcal nuclease from Penaeus monodon: cDNA cloning and its involvement in RNA interference.", "journal": "Fish Shellfish Immunol.", "date": "2011", "authors": "Phetrungnapha Amnat, Panyim Sakol, Ongvarrasopone Chalermporn", "reference": { "type": "PubMed", "id": "21745576", "url": "https://pubmed.ncbi.nlm.nih.gov/21745576" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZT42-1", "protein_name": "Staphylococcal nuclease domain-containing protein 1", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Fem1c genes: conserved members of the Fem1 gene family in vertebrates.", "journal": "Gene", "date": "2003", "authors": "Ventura-Holman Tereza, Lu Deyin, Si Xiaohong, Izevbigie Ernest B, Maher Joseph F", "reference": { "type": "PubMed", "id": "14527725", "url": "https://pubmed.ncbi.nlm.nih.gov/14527725" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7T3P8-1", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Knockdown of zebrafish crim1 results in a bent tail phenotype with defects in somite and vascular development.", "journal": "Mechanisms of development", "date": "2006-04", "authors": "Kinna Genevieve, Kolle Gabriel, Carter Adrian, Key Brian, Lieschke Graham J, Perkins Andrew, Little Melissa H", "reference": { "type": "PubMed", "id": "16524703", "url": "https://pubmed.ncbi.nlm.nih.gov/16524703" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7T3Q2-1", "protein_name": "Cysteine-rich motor neuron 1 protein", "gene_name": "crim1", "tax_name": "Zebrafish" } 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Developmentally regulated expression of two members of the Nrarp family in zebrafish.", "journal": "Gene Expr. Patterns", "date": "2003", "authors": "Topczewska Jolanta M, Topczewski Jacek, Szostak Alena, Solnica-Krezel Lilianna, Hogan Brigid L M", "reference": { "type": "PubMed", "id": "12711545", "url": "https://pubmed.ncbi.nlm.nih.gov/12711545" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7T3X9-1", "protein_name": "Notch-regulated ankyrin repeat-containing protein B", "gene_name": "nrarpb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7T3Y0-1", "protein_name": "Notch-regulated ankyrin repeat-containing protein A", "gene_name": "nrarpa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7T3X9", "url": "https://www.uniprot.org/uniprotkb/Q7T3X9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12711545", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nrarp coordinates endothelial Notch and Wnt signaling to control vessel density in angiogenesis.", "journal": "Developmental cell", "date": "2009-01", "authors": "Phng Li-Kun, Potente Michael, Leslie Jonathan D, Babbage Jane, Nyqvist Daniel, Lobov Ivan, Ondr Jennifer K, Rao Sujata, Lang Richard A, Thurston Gavin, Gerhardt Holger", "reference": { "type": "PubMed", "id": "19154719", "url": "https://pubmed.ncbi.nlm.nih.gov/19154719" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7T3X9-1", "protein_name": "Notch-regulated ankyrin repeat-containing protein B", "gene_name": "nrarpb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7Z6K4-1", "protein_name": "Notch-regulated ankyrin repeat-containing protein", "gene_name": "NRARP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7T3Y0-1", "protein_name": "Notch-regulated ankyrin repeat-containing protein A", "gene_name": "nrarpa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q91ZA8-1", "protein_name": "Notch-regulated ankyrin repeat-containing protein", "gene_name": "Nrarp", "tax_name": "Mouse" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7T3X9", "url": "https://www.uniprot.org/uniprotkb/Q7T3X9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19154719", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Physiol.", "date": "2008", "authors": "Alsop Derek, Vijayan Mathilakath M", "reference": { "type": "PubMed", "id": "18077507", "url": "https://pubmed.ncbi.nlm.nih.gov/18077507" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZTA2-1", "protein_name": "Melanocyte-stimulating hormone receptor", "gene_name": "mc2r", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7ZTA2", "url": "https://www.uniprot.org/uniprotkb/Q7ZTA2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18077507", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Anticonvulsant activity of melatonin and its success in ameliorating epileptic comorbidity-like symptoms in zebrafish.", "journal": "Eur. 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Pharmacol.", "date": "2021", "authors": "Ren Qingyu, Gao Daili, Mou Lei, Zhang Shanshan, Zhang Mengqi, Li Ning, Sik Attila, Jin Meng, Liu Kechun", "reference": { "type": "PubMed", "id": "34699755", "url": "https://pubmed.ncbi.nlm.nih.gov/34699755" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZTA2-1", "protein_name": "Melanocyte-stimulating hormone receptor", "gene_name": "mc2r", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5N8-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "apoa4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R0A8-1", "protein_name": "Synapsin-2a", "gene_name": "syn2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7ZTA2", "url": "https://www.uniprot.org/uniprotkb/Q7ZTA2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34699755", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Severe hypoxia exposure inhibits larval brain development but does not affect the capacity to mount a cortisol stress response in zebrafish.", "journal": "J. 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Biol.", "date": "2022", "authors": "Mikloska Kristina V, Zrini Zoe A, Bernier Nicholas J", "reference": { "type": "PubMed", "id": "34931659", "url": "https://pubmed.ncbi.nlm.nih.gov/34931659" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZTA2-1", "protein_name": "Melanocyte-stimulating hormone receptor", "gene_name": "mc2r", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TZ50-1", "protein_name": "Urotensin 1 precursor", "gene_name": "uts1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7ZTA2", "url": "https://www.uniprot.org/uniprotkb/Q7ZTA2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34931659", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ 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Immunol.", "date": "2000", "authors": "Michalov\u00e1 V, Murray B W, S\u00fcltmann H, Klein J", "reference": { "type": "PubMed", "id": "10799891", "url": "https://pubmed.ncbi.nlm.nih.gov/10799891" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZZ76-1", "protein_name": "Flotillin", "gene_name": "flot1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUU3-1", "protein_name": "TAP binding protein (Tapasin), tandem duplicate 1 precursor", "gene_name": "tapbp.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T5W0-1", "protein_name": "Collagen alpha-2(XI) chain isoform X1", "gene_name": "col11a2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HYH8-1", "protein_name": "Death domain-associated protein 6", "gene_name": "daxx", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HZ21-1", "protein_name": "Major histocompatibility complex class I UKA isoform X1", "gene_name": "mhc1uka", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7ZZ76", "url": "https://www.uniprot.org/uniprotkb/Q7ZZ76" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10799891", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Conservation of Mhc class III region synteny between zebrafish and human as determined by radiation hybrid mapping.", "journal": "J. Immunol.", "date": "2000", "authors": "S\u00fcltmann H, Sato A, Murray B W, Takezaki N, Geisler R, Rauch G J, Klein J", "reference": { "type": "PubMed", "id": "11120825", "url": "https://pubmed.ncbi.nlm.nih.gov/11120825" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZZ76-1", "protein_name": "Flotillin", "gene_name": "flot1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q803I4-1", "protein_name": "E3 ubiquitin-protein ligase RING2", "gene_name": "rnf2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HX37-1", "protein_name": "palmitoyl-CoA hydrolase", "gene_name": "ppt2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HYF7-1", "protein_name": "Superkiller complex protein 2 isoform X1", "gene_name": "skic2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8JGS9-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "rps18", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8PXX5-1", 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the MHC class I region of the Japanese pufferfish (Fugu rubripes).", "journal": "Immunogenetics", "date": "2001", "authors": "Clark M S, Shaw L, Kelly A, Snell P, Elgar G", "reference": { "type": "PubMed", "id": "11220619", "url": "https://pubmed.ncbi.nlm.nih.gov/11220619" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZZ76-1", "protein_name": "Flotillin", "gene_name": "flot1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUU3-1", "protein_name": "TAP binding protein (Tapasin), tandem duplicate 1 precursor", "gene_name": "tapbp.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T5W0-1", "protein_name": "Collagen alpha-2(XI) chain isoform X1", "gene_name": "col11a2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HYH8-1", 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Mol. Evol.", "date": "2002", "authors": "M\u00e1laga-Trillo Edward, Laessing Ute, Lang Dirk M, Meyer Axel, Stuermer Claudia A O", "reference": { "type": "PubMed", "id": "11821916", "url": "https://pubmed.ncbi.nlm.nih.gov/11821916" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7ZZ76-1", "protein_name": "Flotillin", "gene_name": "flot1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q98TZ8-1", "protein_name": "Flotillin-2a", "gene_name": "flot2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q7ZZ76", "url": "https://www.uniprot.org/uniprotkb/Q7ZZ76" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11821916", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Restricted expression of reggie genes and proteins during early zebrafish development.", "journal": "J. 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Dev.", "date": "2008", "authors": "Nishiwaki Yuko, Komori Atsuko, Sagara Hiroshi, Suzuki Emiko, Manabe Tomonori, Hosoya Toshihiko, Nojima Yasuhiro, Wada Hironori, Tanaka Hideomi, Okamoto Hitoshi, Masai Ichiro", "reference": { "type": "PubMed", "id": "18824093", "url": "https://pubmed.ncbi.nlm.nih.gov/18824093" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q800E7-1", "protein_name": "Phosphodiesterase", "gene_name": "pde6a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q800E7", "url": "https://www.uniprot.org/uniprotkb/Q800E7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18824093", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PRE-1, a cis element sufficient to enhance cone- and rod- specific expression in differentiating zebrafish photoreceptors.", "journal": "BMC Dev. 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Biol.", "date": "2021", "authors": "Crouzier Lucie, Diez Camille, Richard Elodie M, Cubedo Nicolas, Barbereau Cl\u00e9ment, Rossel Mireille, Delaunay Thomas, Maurice Tangui, Delprat Benjamin", "reference": { "type": "PubMed", "id": "34095146", "url": "https://pubmed.ncbi.nlm.nih.gov/34095146" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q800E7-1", "protein_name": "Phosphodiesterase", "gene_name": "pde6a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q800E7", "url": "https://www.uniprot.org/uniprotkb/Q800E7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34095146", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dysregulation of Spliceosomes Complex Induces Retinitis Pigmentosa-Like Characteristics in sf3b4-Depleted Zebrafish.", "journal": "Am. 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Pathol.", "date": "2023", "authors": "Okamoto K., Tse W.K.F., Ulhaq Z.S., Ogino Y.", "reference": { "type": "PubMed", "id": "37263342", "url": "https://pubmed.ncbi.nlm.nih.gov/37263342" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q800E7-1", "protein_name": "Phosphodiesterase", "gene_name": "pde6a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NWB3-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "sf3b4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8PWG5-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "prpf6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q800E7", "url": "https://www.uniprot.org/uniprotkb/Q800E7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37263342", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Retinal degeneration in rpgra mutant zebrafish.", "journal": "Front. 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