[ { "title": "Studies on vacuolar membrane microdomains isolated from Arabidopsis suspension-cultured cells: local distribution of vacuolar membrane proteins.", "journal": "Plant Cell Physiol.", "date": "2013", "authors": "Yoshida Katsuhisa, Ohnishi Miwa, Fukao Yoichiro, Okazaki Yozo, Fujiwara Masayuki, Song Chihong, Nakanishi Yoichi, Saito Kazuki, Shimmen Teruo, Suzaki Toshinobu, Hayashi Fumio, Fukaki Hidehiro, Maeshima Masayoshi, Mimura Tetsuro", "reference": { "type": "PubMed", "id": "23903016", "url": "https://pubmed.ncbi.nlm.nih.gov/23903016" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LVD9-1", "protein_name": "Protein DETOXIFICATION 40", "gene_name": "DTX40", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38956-1", "protein_name": "Protein DETOXIFICATION 29", "gene_name": "DTX29", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LVD9", "url": "https://www.uniprot.org/uniprotkb/Q9LVD9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23903016", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gene regulation by low level UV-B radiation: identification by DNA array analysis.", "journal": "Photochem. Photobiol. Sci.", "date": "2002", "authors": "Brosch\u00e9 Mikael, Schuler Mary A, Kalbina Irina, Connor Lynn, Strid Ake", "reference": { "type": "PubMed", "id": "12665302", "url": "https://pubmed.ncbi.nlm.nih.gov/12665302" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LVJ0-1", "protein_name": "UV-B-induced protein At3g17800, chloroplastic", "gene_name": "MEB5.2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LVJ0", "url": "https://www.uniprot.org/uniprotkb/Q9LVJ0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12665302", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ultraviolet-B signalling: Arabidopsis brassinosteroid mutants are defective in UV-B regulated defence gene expression.", "journal": "Plant Physiol. Biochem.", "date": "2004", "authors": "S\u00e4venstrand Helena, Brosch\u00e9 Mikael, Strid Ake", "reference": { "type": "PubMed", "id": "15474373", "url": "https://pubmed.ncbi.nlm.nih.gov/15474373" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LVJ0-1", "protein_name": "UV-B-induced protein At3g17800, chloroplastic", "gene_name": "MEB5.2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LVJ0", "url": "https://www.uniprot.org/uniprotkb/Q9LVJ0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15474373", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A cluster of Arabidopsis genes with a coordinate response to an environmental stimulus.", "journal": "Current biology : CB", "date": "2004-05-25", "authors": "Finnegan E Jean, Sheldon Candice C, Jardinaud Francois, Peacock W James, Dennis Elizabeth S", "reference": { "type": "PubMed", "id": "15186749", "url": "https://pubmed.ncbi.nlm.nih.gov/15186749" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LX15-1", "protein_name": "Protein DOWNSTREAM OF FLC", "gene_name": "DFC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX14-1", "protein_name": "Protein SOSEKI 2", "gene_name": "SOK2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LX15", "url": "https://www.uniprot.org/uniprotkb/Q9LX15" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15186749", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"18156133", "url": "https://pubmed.ncbi.nlm.nih.gov/18156133" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LX15-1", "protein_name": "Protein DOWNSTREAM OF FLC", "gene_name": "DFC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IMQ0-1", "protein_name": "Protein FLC EXPRESSOR", "gene_name": "FLX", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX14-1", "protein_name": "Protein SOSEKI 2", "gene_name": "SOK2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LX15", "url": "https://www.uniprot.org/uniprotkb/Q9LX15" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18156133", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The transcriptional co-activator MBF1c is a key regulator of thermotolerance in Arabidopsis thaliana.", "journal": "J. Biol. Chem.", "date": "2008", "authors": "Suzuki Nobuhiro, Bajad Sunil, Shuman Joel, Shulaev Vladimir, Mittler Ron", "reference": { "type": "PubMed", "id": "18201973", "url": "https://pubmed.ncbi.nlm.nih.gov/18201973" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LX85-1", "protein_name": "Zinc finger protein ZAT8", "gene_name": "ZAT8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23617-1", "protein_name": "Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5", "gene_name": "TPS5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42410-1", "protein_name": "Zinc finger protein ZAT12", "gene_name": "ZAT12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LV58-1", "protein_name": "Multiprotein-bridging factor 1c", "gene_name": "MBF1C", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LX85", "url": "https://www.uniprot.org/uniprotkb/Q9LX85" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18201973", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular characterization of Arabidopsis PHO80-like proteins, a novel class of CDKA;1-interacting cyclins.", "journal": "Cell. Mol. Life Sci.", "date": "2004", "authors": "Torres Acosta J A, de Almeida Engler J, Raes J, Magyar Z, De Groodt R, Inz\u00e9 D, De Veylder L", "reference": { "type": "PubMed", "id": "15197472", "url": "https://pubmed.ncbi.nlm.nih.gov/15197472" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LY16-1", "protein_name": "Cyclin-U4-2", "gene_name": "CYCU4-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M205-1", "protein_name": "Cyclin-U2-2", "gene_name": "CYCU2-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SHD3-1", "protein_name": "Cyclin-U2-1", "gene_name": "CYCU2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LB60-1", "protein_name": "Cyclin-U3-1", "gene_name": "CYCU3-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80513-1", "protein_name": "Cyclin-U4-1", "gene_name": "CYCU4-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P24100-1", "protein_name": "Cyclin-dependent kinase A-1", "gene_name": "CDKA-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P25859-1", "protein_name": "Cyclin-dependent kinase B1-1", "gene_name": "CDKB1-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKF6-1", "protein_name": "Cyclin-U4-3", "gene_name": "CYCU4-3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJ45-1", "protein_name": "Cyclin-U1-1", "gene_name": "CYCU1-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LY16", "url": "https://www.uniprot.org/uniprotkb/Q9LY16" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15197472", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 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Souvik, Miller Duane D, Balazs Louisa, Pelus Louis, Tigyi Gabor", "reference": { "type": "PubMed", "id": "26027517", "url": "https://pubmed.ncbi.nlm.nih.gov/26027517" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0ABK0LT65-1", "protein_name": "Lysophosphatidic acid receptor 2", "gene_name": "Lpar2", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A0ABK0LT65", "url": "https://www.uniprot.org/uniprotkb/A0ABK0LT65" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.26027517", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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[] } ] }, { "title": "microRNA-499-3p inhibits proliferation and promotes apoptosis of retinal cells in diabetic retinopathy through activation of the TLR4 signaling pathway by targeting IFNA2.", "journal": "Gene", "date": "2020", "authors": "Liu X, Zhang Y, Liang H, Zhang Y, Xu Y", "reference": { "type": "PubMed", "id": "32160960", "url": "https://pubmed.ncbi.nlm.nih.gov/32160960" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0ABK0LVV8-1", "protein_name": "Interferon alpha 2", "gene_name": "Ifna2", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A0ABK0LVV8", "url": "https://www.uniprot.org/uniprotkb/A0ABK0LVV8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.32160960", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ 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osteoarthritis by epigenetic regulation of DACT1.", "journal": "Cellular and molecular life sciences : CMLS", "date": "2022-07-08", "authors": "Zhang Ziqi, Yang Pei, Wang Chunsheng, Tian Run", "reference": { "type": "PubMed", "id": "35802196", "url": "https://pubmed.ncbi.nlm.nih.gov/35802196" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0ABK0LXX0-1", "protein_name": "Dishevelled-binding antagonist of beta-catenin 1", "gene_name": "Dact1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A0ABK0LXX0", "url": "https://www.uniprot.org/uniprotkb/A0ABK0LXX0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.35802196", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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aneurysm.", "journal": "Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie", "date": "2023-05", "authors": "Sun Zheng-Hao, Liu Fei, Kong Liang-Liang, Ji Peng-Min, Huang Lei, Zhou Hui-Min, Sun Ran, Luo Jing, Li Wei-Zu", "reference": { "type": "PubMed", "id": "37002575", "url": "https://pubmed.ncbi.nlm.nih.gov/37002575" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0ABK0M635-1", "protein_name": "Transient receptor potential cation channel, subfamily C, member 6", "gene_name": "Trpc6", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q924V1-1", "protein_name": "NADPH oxidase 4", "gene_name": "Nox4", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A0ABK0M635", "url": "https://www.uniprot.org/uniprotkb/A0ABK0M635" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.37002575", "abstract": "", 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Intercellular adhesion molecule-5 induces dendritic outgrowth by homophilic adhesion.", "journal": "The Journal of cell biology", "date": "2000-07-10", "authors": "Tian L, Nyman H, Kilgannon P, Yoshihara Y, Mori K, Andersson L C, Kaukinen S, Rauvala H, Gallatin W M, Gahmberg C G", "reference": { "type": "PubMed", "id": "10893271", "url": "https://pubmed.ncbi.nlm.nih.gov/10893271" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A6JNN4-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "Icam5", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A6JNN4", "url": "https://www.uniprot.org/uniprotkb/A6JNN4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.10893271", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural study of the N-glycans of intercellular adhesion molecule-5 (telencephalin).", "journal": "Biochimica et biophysica acta", "date": "2009", "authors": "Ohgomori T, Funatsu O, Nakaya S, Morita A, Ikekita M", "reference": { "type": "PubMed", "id": "19733219", "url": "https://pubmed.ncbi.nlm.nih.gov/19733219" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A6JNN4-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "Icam5", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A6JNN4", "url": "https://www.uniprot.org/uniprotkb/A6JNN4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.19733219", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Dyn.", "date": "2005", "authors": "Qian Feng, Zhen Fenghua, Ong Chinthing, Jin Suk-Won, Meng Soo Hui, Stainier Didier Y R, Lin Shuo, Peng Jinrong, Wen Zilong", "reference": { "type": "PubMed", "id": "15937927", "url": "https://pubmed.ncbi.nlm.nih.gov/15937927" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PBT4-1", "protein_name": "Dual specificity protein phosphatase", "gene_name": "dusp5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P6J4-1", "protein_name": "interstitial collagenase", "gene_name": "mmp13a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QCE5-1", "protein_name": "Zinc finger-like gene 2a", "gene_name": "znfl2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32U5S7-1", "protein_name": "Transmembrane protein 254", "gene_name": "tmem254", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A7B9-1", "protein_name": "Tyrosine-protein kinase", "gene_name": "yrk", "tax_name": "Zebrafish" } ], 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Biol.", "date": "2007", "authors": "Wang Lifeng, Zhang Ying, Shao Ming, Zhang Hongwei", "reference": { "type": "PubMed", "id": "17486546", "url": "https://pubmed.ncbi.nlm.nih.gov/17486546" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PH19-1", "protein_name": "Glycine amidinotransferase, mitochondrial", "gene_name": "gatm", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q71N41-1", "protein_name": "Guanidinoacetate N-methyltransferase", "gene_name": "gamt", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P953-1", "protein_name": "Transporter", "gene_name": "slc6a8", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6PH19", "url": "https://www.uniprot.org/uniprotkb/Q6PH19" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17486546", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression patterns of the creatine metabolism-related molecules AGAT, GAMT and CT1 in adult zebrafish Danio rerio.", "journal": "J. 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Dev.", "date": "2004", "authors": "Argenton Francesco, Giudici Simona, Deflorian Gianluca, Cimbro Simona, Cotelli Franco, Beltrame Monica", "reference": { "type": "PubMed", "id": "15037315", "url": "https://pubmed.ncbi.nlm.nih.gov/15037315" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6RVD7-1", "protein_name": "Transcription factor Sox-21-B", "gene_name": "sox21b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7SZS1-1", "protein_name": "Transcription factor Sox-21-A", "gene_name": "sox21a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6RVD7", "url": "https://www.uniprot.org/uniprotkb/Q6RVD7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15037315", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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