[ { "title": "The orphan receptor GPR17 identified as a new dual uracil nucleotides/cysteinyl-leukotrienes receptor.", "journal": "The EMBO journal", "date": "2006", "authors": "Ciana P, Fumagalli M, Trincavelli ML, Verderio C, Rosa P, Lecca D, Ferrario S, Parravicini C, Capra V, Gelosa P, Guerrini U, Belcredito S, Cimino M, Sironi L, Tremoli E, Rovati GE, Martini C, Abbracchio MP", "reference": { "type": "PubMed", "id": "16990797", "url": "https://pubmed.ncbi.nlm.nih.gov/16990797" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NPC1-1", "protein_name": "Leukotriene B4 receptor 2", "gene_name": "LTB4R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15077-1", "protein_name": "P2Y purinoceptor 6", "gene_name": "P2RY6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47900-1", "protein_name": "P2Y purinoceptor 1", "gene_name": "P2RY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00398-1", "protein_name": "Putative P2Y purinoceptor 10", 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Exportin 7 defines a novel general nuclear export pathway.", "journal": "The EMBO journal", "date": "2004", "authors": "Mingot JM, Bohnsack MT, Jakle U, Gorlich D", "reference": { "type": "PubMed", "id": "15282546", "url": "https://pubmed.ncbi.nlm.nih.gov/15282546" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIA9-1", "protein_name": "Exportin-7", "gene_name": "XPO7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60842-1", "protein_name": "Eukaryotic initiation factor 4A-I", "gene_name": "EIF4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31947-1", "protein_name": "14-3-3 protein sigma", "gene_name": "SFN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07960-1", "protein_name": "Rho GTPase-activating protein 1", "gene_name": "ARHGAP1", "tax_name": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "STRADalpha regulates LKB1 localization by blocking access to importin-alpha, and by association with Crm1 and exportin-7.", "journal": "Molecular biology of the cell", "date": "2008", "authors": "Dorfman J, Macara IG", "reference": { "type": "PubMed", "id": "18256292", "url": "https://pubmed.ncbi.nlm.nih.gov/18256292" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIA9-1", "protein_name": "Exportin-7", "gene_name": "XPO7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIA9", "url": "https://www.uniprot.org/uniprotkb/Q9UIA9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18256292", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Assessment of the red cell proteome of young patients with unexplained hemolytic anemia by two-dimensional differential in-gel electrophoresis (DIGE).", "journal": "PLoS ONE", "date": "2012", "authors": "von L\u00f6hneysen Katharina, Scott Thomas M, Soldau Katrin, Xu Xiuling, Friedman Jeffrey S", "reference": { "type": "PubMed", "id": "22509282", "url": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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Clin. Immunogenet.", "date": "1999", "authors": "Scaviner D, Barbi\u00e9 V, Ruiz M, Lefranc M P", "reference": { "type": "PubMed", "id": "10575277", "url": "https://pubmed.ncbi.nlm.nih.gov/10575277" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P01602-1", "protein_name": "Immunoglobulin kappa variable 1-5", "gene_name": "IGKV1-5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01721-1", "protein_name": "Immunoglobulin lambda variable 6-57", "gene_name": "IGLV6-57", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23083-1", "protein_name": "Immunoglobulin heavy variable 1-2", "gene_name": "IGHV1-2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P01602", "url": "https://www.uniprot.org/uniprotkb/P01602" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10575277", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The primary structure of the Bence-Jones protein Kue. 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Chem.", "date": "1979", "authors": "Eulitz M, Kley H P, Zeitler H J", "reference": { "type": "PubMed", "id": "112021", "url": "https://pubmed.ncbi.nlm.nih.gov/112021" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P01602-1", "protein_name": "Immunoglobulin kappa variable 1-5", "gene_name": "IGKV1-5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P01602", "url": "https://www.uniprot.org/uniprotkb/P01602" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.112021", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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J. 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Virol.", "date": "1996", "authors": "Bouhamdan M, Benichou S, Rey F, Navarro J M, Agostini I, Spire B, Camonis J, Slupphaug G, Vigne R, Benarous R, Sire J", "reference": { "type": "PubMed", "id": "8551605", "url": "https://pubmed.ncbi.nlm.nih.gov/8551605" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13051-1", "protein_name": "Uracil-DNA glycosylase", "gene_name": "UNG", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13051", "url": "https://www.uniprot.org/uniprotkb/P13051" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8551605", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.", "journal": "The EMBO journal", "date": "1998", "authors": "Parikh SS, Mol CD, Slupphaug G, Bharati S, Krokan HE, Tainer JA", "reference": { "type": "PubMed", "id": "9724657", "url": "https://pubmed.ncbi.nlm.nih.gov/9724657" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13051-1", "protein_name": "Uracil-DNA glycosylase", "gene_name": "UNG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13569-1", "protein_name": "G/T mismatch-specific thymine DNA glycosylase", "gene_name": "TDG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78549-2", "protein_name": "Endonuclease III-like protein 1", "gene_name": "NTHL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15527-1", "protein_name": "N-glycosylase/DNA lyase", "gene_name": "OGG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27695-1", "protein_name": "DNA repair nuclease/redox regulator APEX1", "gene_name": "APEX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95243-1", "protein_name": "Methyl-CpG-binding domain protein 4", "gene_name": "MBD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53HV7-1", "protein_name": "Single-strand selective monofunctional uracil DNA glycosylase", "gene_name": "SMUG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29372-1", "protein_name": "DNA-3-methyladenine glycosylase", "gene_name": "MPG", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13051", "url": "https://www.uniprot.org/uniprotkb/P13051" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9724657", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 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"1999", "authors": "Kuhlman TC, Cho H, Reinberg D, Hernandez N", "reference": { "type": "PubMed", "id": "10022900", "url": "https://pubmed.ncbi.nlm.nih.gov/10022900" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7C8-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15544-1", "protein_name": "Transcription initiation factor TFIID subunit 11", "gene_name": "TAF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VT52-1", "protein_name": "Regulation of nuclear pre-mRNA domain-containing protein 2", "gene_name": "RPRD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVM9-1", "protein_name": "Integrator complex subunit 13", "gene_name": "INTS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SY0-1", "protein_name": "Integrator complex subunit 14", "gene_name": "INTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HW7-1", "protein_name": "Integrator complex subunit 4", "gene_name": "INTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N201-1", "protein_name": "Integrator complex subunit 1", "gene_name": "INTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2F5-1", "protein_name": "Little elongation complex subunit 1", "gene_name": "ICE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16594-1", "protein_name": "Transcription initiation factor TFIID subunit 9", "gene_name": "TAF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15543-1", "protein_name": "Transcription initiation factor TFIID subunit 13", "gene_name": "TAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09086-1", "protein_name": "POU domain, class 2, transcription factor 2", "gene_name": "POU2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52747-1", "protein_name": "Zinc finger protein 143", "gene_name": "ZNF143", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQG5-1", "protein_name": "Regulation of nuclear pre-mRNA domain-containing protein 1B", "gene_name": "RPRD1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP77-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "SSU72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SXM2-1", "protein_name": "snRNA-activating protein complex subunit 4", "gene_name": "SNAPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16533-1", "protein_name": "snRNA-activating protein complex subunit 1", "gene_name": "SNAPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ15-1", "protein_name": "SOSS complex subunit B1", "gene_name": "NABP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV88-1", "protein_name": "Integrator complex subunit 9", "gene_name": "INTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXW5-1", "protein_name": "Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2", "gene_name": "RPAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13487-1", "protein_name": "snRNA-activating protein complex subunit 2", "gene_name": "SNAPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49848-1", "protein_name": "Transcription initiation factor TFIID subunit 6", "gene_name": "TAF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29083-1", "protein_name": "General transcription factor IIE subunit 1", "gene_name": "GTF2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29084-1", "protein_name": "Transcription initiation factor IIE subunit beta", "gene_name": "GTF2E2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75971-1", "protein_name": "snRNA-activating protein complex subunit 5", "gene_name": "SNAPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75909-3", "protein_name": "Cyclin-K", "gene_name": "CCNK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TA45-1", "protein_name": "Integrator complex subunit 11", "gene_name": "INTS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5P1-1", "protein_name": "Zinc finger CCCH domain-containing protein 8", "gene_name": "ZC3H8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVH2-1", "protein_name": "Integrator complex subunit 7", "gene_name": "INTS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q659A1-1", "protein_name": "Little elongation complex subunit 2", "gene_name": "ICE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CB8-1", "protein_name": "Integrator complex subunit 12", "gene_name": "INTS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H814-1", "protein_name": "Phosphorylated adapter RNA export protein", "gene_name": "PHAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AH0-1", "protein_name": "SOSS complex subunit B2", "gene_name": "NABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL03-1", "protein_name": "Integrator complex subunit 6", "gene_name": "INTS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68E01-1", "protein_name": "Integrator complex subunit 3", "gene_name": "INTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0H0-1", "protein_name": "Integrator complex subunit 2", "gene_name": "INTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVR2-1", "protein_name": "Integrator complex subunit 10", "gene_name": "INTS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P9B9-1", "protein_name": "Integrator complex subunit 5", "gene_name": "INTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00267-1", "protein_name": "Transcription elongation factor SPT5", "gene_name": "SUPT5H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60583-1", "protein_name": "Cyclin-T2", "gene_name": "CCNT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92966-1", "protein_name": "snRNA-activating protein complex subunit 3", "gene_name": "SNAPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00472-1", "protein_name": "RNA polymerase II elongation factor ELL2", "gene_name": "ELL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HB65-1", "protein_name": "RNA polymerase II elongation factor ELL3", "gene_name": "ELL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00403-1", "protein_name": "Transcription initiation factor IIB", "gene_name": "GTF2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P16-1", "protein_name": "Regulation of nuclear pre-mRNA domain-containing protein 1A", "gene_name": "RPRD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75QN2-1", "protein_name": "Integrator complex subunit 8", "gene_name": "INTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15542-1", "protein_name": "Transcription initiation factor TFIID subunit 5", "gene_name": "TAF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63272-1", "protein_name": "Transcription elongation factor SPT4", "gene_name": "SUPT4H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10022900", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 74 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7.", "journal": "Molecular cell", "date": "1999", "authors": "Tirode F, Busso D, Coin F, Egly JM", "reference": { "type": "PubMed", "id": "10024882", "url": "https://pubmed.ncbi.nlm.nih.gov/10024882" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7C8-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15544-1", "protein_name": "Transcription initiation factor TFIID subunit 11", "gene_name": "TAF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VWG9-1", "protein_name": "Transcription initiation factor TFIID subunit 3", "gene_name": "TAF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16594-1", "protein_name": "Transcription initiation factor TFIID subunit 9", "gene_name": "TAF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15543-1", "protein_name": "Transcription initiation factor TFIID subunit 13", "gene_name": "TAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92750-1", "protein_name": "Transcription initiation factor TFIID subunit 4B", "gene_name": "TAF4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49848-1", "protein_name": "Transcription initiation factor TFIID subunit 6", "gene_name": "TAF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1X5-1", "protein_name": "Transcription initiation factor TFIID subunit 2", "gene_name": "TAF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29083-1", "protein_name": "General transcription factor IIE subunit 1", "gene_name": "GTF2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00268-1", "protein_name": "Transcription initiation factor TFIID subunit 4", "gene_name": "TAF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29084-1", "protein_name": "Transcription initiation factor IIE subunit beta", "gene_name": "GTF2E2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92804-1", "protein_name": "TATA-binding protein-associated factor 2N", "gene_name": "TAF15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16514-1", "protein_name": "Transcription initiation factor TFIID subunit 12", "gene_name": "TAF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21675-2", "protein_name": "Transcription initiation factor TFIID subunit 1", "gene_name": "TAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZX4-1", "protein_name": "Transcription initiation factor TFIID subunit 1-like", "gene_name": "TAF1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBM6-1", "protein_name": "Transcription initiation factor TFIID subunit 9B", "gene_name": "TAF9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12962-1", "protein_name": "Transcription initiation factor TFIID subunit 10", "gene_name": "TAF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00403-1", "protein_name": "Transcription initiation factor IIB", "gene_name": "GTF2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15542-1", "protein_name": "Transcription initiation factor TFIID subunit 5", "gene_name": "TAF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5H9L4-1", "protein_name": "Transcription initiation factor TFIID subunit 7-like", "gene_name": "TAF7L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15545-1", "protein_name": "Transcription initiation factor TFIID subunit 7", "gene_name": "TAF7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 346, "end_pos": 346, "sequence_org": "K", "sequence_mut": "R", "comment": "Dominant-negative effect on transcription and NER, induces chromatin collapse, probably has no ATPase activity. No transcriptional activity of the reconstituted TFIIH complex. TFHHI is inactive in DNA repair and in transcription.", "evidence": [ { "database": "UniProtKB", "id": "P19447", "url": "https://www.uniprot.org/uniprotkb/P19447" }, { "database": "PubMed", "id": "10024882", "url": "https://pubmed.ncbi.nlm.nih.gov/10024882" }, { "database": "PubMed", "id": "8157004", "url": "https://pubmed.ncbi.nlm.nih.gov/8157004" }, { "database": "PubMed", "id": "17466626", "url": "https://pubmed.ncbi.nlm.nih.gov/17466626" } ], "uniprot_canonical_ac": "P19447-1" }, { "start_pos": 48, "end_pos": 48, "sequence_org": "K", "sequence_mut": "R", "comment": "Decreased transcriptional activity of the reconstituted TFIIH complex. Damaged DNA opening by TFIIH is impeded. Loss of TFIIH 5'-3' helicase activity, still binds GTF2H2. Does not restore nucleotide excision repair (NER) in deficient cells, does not bind UV damaged DNA.", "evidence": [ { "database": "UniProtKB", "id": "P18074", "url": "https://www.uniprot.org/uniprotkb/P18074" }, { "database": "PubMed", "id": "9771713", "url": "https://pubmed.ncbi.nlm.nih.gov/9771713" }, { "database": "PubMed", "id": "10024882", "url": "https://pubmed.ncbi.nlm.nih.gov/10024882" }, { "database": "PubMed", "id": "31253769", "url": "https://pubmed.ncbi.nlm.nih.gov/31253769" }, { "database": "PubMed", "id": "23352696", "url": "https://pubmed.ncbi.nlm.nih.gov/23352696" }, { "database": "PubMed", "id": "17466626", "url": "https://pubmed.ncbi.nlm.nih.gov/17466626" } ], "uniprot_canonical_ac": "P18074-1" } ], "record_id": "pubmed.10024882", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 48 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation.", "journal": "Cell", "date": "1999", "authors": "Yamaguchi Y, Takagi T, Wada T, Yano K, Furuya A, Sugimoto S, Hasegawa J, Handa H", "reference": { "type": "PubMed", "id": "10199401", "url": "https://pubmed.ncbi.nlm.nih.gov/10199401" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": 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"P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CJ1-1", "protein_name": "ELL-associated factor 2", "gene_name": "EAF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": 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subunit 1", "gene_name": "GTF2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00268-1", "protein_name": "Transcription initiation factor TFIID subunit 4", "gene_name": "TAF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29084-1", "protein_name": "Transcription initiation factor IIE subunit beta", "gene_name": "GTF2E2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": 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"gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WX92-2", "protein_name": "Negative elongation factor B", "gene_name": "NELFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96ST2-1", "protein_name": "Protein IWS1 homolog", "gene_name": "IWS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16514-1", "protein_name": "Transcription initiation factor TFIID subunit 12", "gene_name": "TAF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21675-2", "protein_name": "Transcription initiation factor TFIID subunit 1", "gene_name": "TAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZX4-1", "protein_name": "Transcription initiation factor TFIID subunit 1-like", "gene_name": "TAF1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBM6-1", "protein_name": "Transcription initiation factor TFIID 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"protein_name": "Transcription initiation factor TFIID subunit 7-like", "gene_name": "TAF7L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63272-1", "protein_name": "Transcription elongation factor SPT4", "gene_name": "SUPT4H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15545-1", "protein_name": "Transcription initiation factor TFIID subunit 7", "gene_name": "TAF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42568-1", "protein_name": "Protein AF-9", "gene_name": "MLLT3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10199401", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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Cell. Biol.", "date": "1999", "authors": "Kim J B, Yamaguchi Y, Wada T, Handa H, Sharp P A", "reference": { "type": "PubMed", "id": "10454543", "url": "https://pubmed.ncbi.nlm.nih.gov/10454543" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00267-1", "protein_name": "Transcription elongation factor SPT5", "gene_name": "SUPT5H", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43719-1", "protein_name": "17S U2 SnRNP complex component HTATSF1", "gene_name": "HTATSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63272-1", "protein_name": "Transcription elongation factor SPT4", "gene_name": "SUPT4H1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", 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[] } ] }, { "title": "Estrogen induction of the cyclin D1 promoter: involvement of a cAMP response-like element.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1999", "authors": "Sabbah M, Courilleau D, Mester J, Redeuilh G", "reference": { "type": "PubMed", "id": "10500157", "url": "https://pubmed.ncbi.nlm.nih.gov/10500157" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", 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"protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10242-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_name": 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"gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10500157", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two separate sequences of PB2 subunit constitute the RNA cap-binding site of influenza virus RNA polymerase.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "1999", "authors": "Honda A, Mizumoto K, Ishihama A", "reference": { "type": "PubMed", "id": "10526235", "url": "https://pubmed.ncbi.nlm.nih.gov/10526235" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8CG34-1", "protein_name": "Nuclear envelope pore membrane protein POM 121C", "gene_name": "POM121C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": "Nuclear pore complex protein Nup214", "gene_name": "NUP214", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92621-1", "protein_name": "Nuclear pore complex protein Nup205", "gene_name": "NUP205", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SRE5-1", "protein_name": "Nucleoporin 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"Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HA1-1", "protein_name": "Nuclear envelope pore membrane protein POM 121", "gene_name": "POM121", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49790-1", "protein_name": "Nuclear pore complex protein Nup153", "gene_name": "NUP153", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12769-1", "protein_name": "Nuclear pore complex protein Nup160", "gene_name": "NUP160", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10526235", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 41 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Peeling by binding or twisting by cranking: models for promoter opening and transcription initiation by RNA polymerase II.", "journal": "BioEssays : news and reviews in molecular, cellular and developmental biology", "date": "2000", "authors": "Fiedler U, Marc Timmers HT", "reference": { "type": "PubMed", "id": "10723029", "url": "https://pubmed.ncbi.nlm.nih.gov/10723029" }, "referenced_glycans": [], "referenced_proteins": [ { 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factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92804-1", "protein_name": "TATA-binding protein-associated factor 2N", "gene_name": "TAF15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16514-1", "protein_name": "Transcription initiation factor TFIID subunit 12", "gene_name": "TAF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21675-2", "protein_name": "Transcription initiation factor TFIID subunit 1", "gene_name": "TAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZX4-1", "protein_name": "Transcription initiation factor TFIID subunit 1-like", "gene_name": "TAF1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBM6-1", "protein_name": "Transcription initiation factor TFIID subunit 9B", "gene_name": "TAF9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12962-1", "protein_name": "Transcription initiation factor TFIID subunit 10", "gene_name": "TAF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00403-1", "protein_name": "Transcription initiation factor IIB", "gene_name": "GTF2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15542-1", "protein_name": "Transcription initiation factor TFIID subunit 5", "gene_name": "TAF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5H9L4-1", "protein_name": "Transcription initiation factor 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I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXH7-1", "protein_name": "Negative elongation factor C/D", "gene_name": "NELFCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14241-2", "protein_name": "Elongin-A", "gene_name": "ELOA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15369-1", "protein_name": "Elongin-C", "gene_name": "ELOC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B0-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase", "gene_name": "CTDP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08945-1", "protein_name": "FACT complex subunit SSRP1", "gene_name": "SSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15370-1", "protein_name": "Elongin-B", "gene_name": "ELOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor 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"protein_name": "Negative elongation factor E", "gene_name": "NELFE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B9-1", "protein_name": "FACT complex subunit SPT16", "gene_name": "SUPT16H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P2-1", "protein_name": "Negative elongation factor A", "gene_name": "NELFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYF1-1", "protein_name": "Elongin-A2", "gene_name": "ELOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63272-1", "protein_name": "Transcription elongation factor SPT4", "gene_name": "SUPT4H1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 775, "end_pos": 775, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by CDK9", "evidence": [ { "database": "UniProtKB", "id": "O00267", "url": "https://www.uniprot.org/uniprotkb/O00267" }, { "database": "iPTMnet", "id": "O00267", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O00267" }, { "database": "PubMed", "id": "16427012", "url": "https://pubmed.ncbi.nlm.nih.gov/16427012" }, { "database": "PubMed", "id": "27353326", "url": "https://pubmed.ncbi.nlm.nih.gov/27353326" }, { "database": "PubMed", "id": "10757782", "url": "https://pubmed.ncbi.nlm.nih.gov/10757782" } ], "site_lbl": "Thr775", "uniprot_canonical_ac": "O00267-1" }, { "start_pos": 784, "end_pos": 784, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by CDK9", "evidence": [ { "database": "UniProtKB", "id": "O00267", "url": 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"protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10415-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "BCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC69-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "KCTD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23771-1", "protein_name": "Trans-acting T-cell-specific transcription factor GATA-3", "gene_name": "GATA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15169-1", "protein_name": "Axin-1", "gene_name": "AXIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": 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}, { "uniprot_canonical_ac": "Q9HCE1-1", "protein_name": "RNA helicase MOV-10", "gene_name": "MOV10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCL2-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "GPAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10828826", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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"gene_name": "NELFCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14241-2", "protein_name": "Elongin-A", "gene_name": "ELOA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15369-1", "protein_name": "Elongin-C", "gene_name": "ELOC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B0-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase", "gene_name": "CTDP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08945-1", "protein_name": "FACT complex subunit SSRP1", "gene_name": "SSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15370-1", "protein_name": "Elongin-B", "gene_name": "ELOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75909-3", "protein_name": "Cyclin-K", "gene_name": "CCNK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WX92-2", "protein_name": "Negative elongation factor B", "gene_name": "NELFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00267-1", "protein_name": "Transcription elongation factor SPT5", "gene_name": "SUPT5H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18615-1", "protein_name": "Negative elongation factor E", "gene_name": "NELFE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60583-1", "protein_name": "Cyclin-T2", "gene_name": "CCNT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B9-1", "protein_name": "FACT complex subunit SPT16", "gene_name": "SUPT16H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P2-1", "protein_name": "Negative elongation factor A", "gene_name": "NELFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYF1-1", "protein_name": "Elongin-A2", "gene_name": "ELOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63272-1", "protein_name": "Transcription elongation factor SPT4", "gene_name": "SUPT4H1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10866664", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "O15169-1", "protein_name": "Axin-1", "gene_name": "AXIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10242-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LFL8-1", "protein_name": "CXXC-type zinc finger protein 5", "gene_name": "CXXC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04155-1", "protein_name": "Trefoil factor 1", "gene_name": "TFF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE1-1", "protein_name": "RNA helicase MOV-10", "gene_name": "MOV10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCL2-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "GPAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10873660", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Control of elongation by RNA polymerase II.", "journal": "Trends in biochemical sciences", "date": "2000", "authors": "Conaway JW, Shilatifard A, Dvir A, Conaway RC", "reference": { "type": "PubMed", "id": "10916156", "url": "https://pubmed.ncbi.nlm.nih.gov/10916156" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXH7-1", "protein_name": "Negative elongation factor C/D", "gene_name": "NELFCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B0-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase", "gene_name": "CTDP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WX92-2", "protein_name": "Negative elongation factor B", "gene_name": "NELFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00267-1", "protein_name": "Transcription elongation factor SPT5", "gene_name": "SUPT5H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18615-1", "protein_name": "Negative elongation factor E", "gene_name": "NELFE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P2-1", "protein_name": "Negative elongation factor A", "gene_name": "NELFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63272-1", "protein_name": "Transcription elongation factor SPT4", "gene_name": "SUPT4H1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10916156", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 33 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10920397", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 41 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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binding protein.", "journal": "Molecular and cellular biology", "date": "2000", "authors": "Carstens RP, Wagner EJ, Garcia-Blanco MA", "reference": { "type": "PubMed", "id": "10982855", "url": "https://pubmed.ncbi.nlm.nih.gov/10982855" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01085-1", "protein_name": "Nucleolysin TIAR", "gene_name": "TIAL1", "tax_name": 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"P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43251-1", "protein_name": "RNA binding protein fox-1 homolog 2", "gene_name": "RBFOX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31483-1", "protein_name": "Cytotoxic granule associated RNA binding protein TIA1", "gene_name": "TIA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXG1-1", "protein_name": "Epithelial splicing regulatory protein 1", "gene_name": "ESRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6T0-1", "protein_name": "Epithelial splicing regulatory protein 2", "gene_name": "ESRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10982855", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 26 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "p53 and c-Jun functionally synergize in the regulation of the DNA repair gene hMSH2 in response to UV.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Scherer SJ, Maier SM, Seifert M, Hanselmann RG, Zang KD, Muller-Hermelink HK, Angel P, Welter C, Schartl M", "reference": { "type": "PubMed", "id": "10984493", "url": "https://pubmed.ncbi.nlm.nih.gov/10984493" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA 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"uniprot_canonical_ac": "Q07654-1", "protein_name": "Trefoil factor 3", "gene_name": "TFF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04726-1", "protein_name": "Transducin-like enhancer protein 3", "gene_name": "TLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01135-1", "protein_name": "Protransforming growth factor alpha", "gene_name": "TGFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99966-1", "protein_name": "Cbp/p300-interacting transactivator 1", "gene_name": "CITED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q9-1", "protein_name": "Nuclear receptor coactivator 3", "gene_name": "NCOA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01196-1", "protein_name": "Runt-related transcription factor 1", "gene_name": "RUNX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14646-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4ZG55-1", "protein_name": "Protein GREB1", "gene_name": "GREB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15853-1", "protein_name": "Upstream stimulatory factor 2", "gene_name": "USF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00482-1", "protein_name": "Nuclear receptor subfamily 5 group A member 2", "gene_name": "NR5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14678-1", "protein_name": "KN motif and ankyrin repeat domain-containing protein 1", "gene_name": "KANK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99873-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "PRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10415-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "BCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC69-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "KCTD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23771-1", "protein_name": "Trans-acting T-cell-specific transcription factor GATA-3", "gene_name": "GATA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15169-1", "protein_name": "Axin-1", "gene_name": "AXIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10242-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LFL8-1", "protein_name": "CXXC-type zinc finger protein 5", "gene_name": "CXXC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04155-1", "protein_name": "Trefoil factor 1", "gene_name": "TFF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE1-1", "protein_name": "RNA helicase MOV-10", "gene_name": "MOV10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCL2-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "GPAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11010967", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MYB oncogene amplification in hereditary BRCA1 breast cancer.", "journal": "Cancer research", "date": "2000", "authors": "Kauraniemi P, Hedenfalk I, Persson K, Duggan DJ, Tanner M, Johannsson O, Olsson H, Trent JM, Isola J, Borg A", "reference": { "type": "PubMed", "id": "11034064", "url": "https://pubmed.ncbi.nlm.nih.gov/11034064" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75362-1", "protein_name": "Zinc finger protein 217", "gene_name": "ZNF217", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCK5-1", "protein_name": "Protein argonaute-4", "gene_name": "AGO4", "tax_name": 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"protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13547-1", "protein_name": "Histone deacetylase 1", "gene_name": "HDAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22415-1", "protein_name": "Upstream stimulatory factor 1", "gene_name": "USF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53539-1", "protein_name": "Protein FosB", "gene_name": "FOSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15648-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 1", "gene_name": "MED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13951-1", "protein_name": "Core-binding factor subunit beta", "gene_name": "CBFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3U4-1", "protein_name": "Cohesin subunit SA-2", "gene_name": "STAG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVM7-1", "protein_name": "Cohesin subunit SA-1", "gene_name": "STAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07654-1", "protein_name": "Trefoil factor 3", "gene_name": "TFF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04726-1", "protein_name": "Transducin-like enhancer protein 3", "gene_name": "TLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01135-1", "protein_name": "Protransforming growth factor alpha", "gene_name": "TGFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99966-1", "protein_name": "Cbp/p300-interacting transactivator 1", "gene_name": "CITED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q9-1", "protein_name": "Nuclear receptor coactivator 3", "gene_name": "NCOA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01196-1", "protein_name": "Runt-related transcription factor 1", "gene_name": "RUNX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14646-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4ZG55-1", "protein_name": "Protein GREB1", "gene_name": "GREB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15853-1", "protein_name": "Upstream stimulatory factor 2", "gene_name": "USF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00482-1", "protein_name": "Nuclear receptor subfamily 5 group A member 2", "gene_name": "NR5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14678-1", "protein_name": "KN motif and ankyrin repeat domain-containing protein 1", "gene_name": "KANK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99873-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "PRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10415-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "BCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC69-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "KCTD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23771-1", "protein_name": "Trans-acting T-cell-specific transcription factor GATA-3", "gene_name": "GATA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15169-1", "protein_name": "Axin-1", "gene_name": "AXIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10242-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LFL8-1", "protein_name": "CXXC-type zinc finger protein 5", "gene_name": "CXXC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04155-1", "protein_name": "Trefoil factor 1", "gene_name": "TFF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE1-1", "protein_name": "RNA helicase MOV-10", "gene_name": "MOV10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCL2-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "GPAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11034064", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PDZK1 and GREB1 are estrogen-regulated genes expressed in hormone-responsive breast cancer.", "journal": "Cancer research", "date": "2000", "authors": "Ghosh MG, Thompson DA, Weigel RJ", "reference": { "type": "PubMed", "id": "11103799", "url": "https://pubmed.ncbi.nlm.nih.gov/11103799" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75362-1", "protein_name": "Zinc finger protein 217", "gene_name": "ZNF217", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCK5-1", "protein_name": "Protein argonaute-4", "gene_name": "AGO4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92793-1", "protein_name": "CREB-binding protein", "gene_name": "CREBBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL18-1", "protein_name": "Protein argonaute-1", "gene_name": "AGO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ9-3", "protein_name": "Trinucleotide repeat-containing gene 6B protein", "gene_name": "TNRC6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15185-1", "protein_name": "Prostaglandin E synthase 3", "gene_name": "PTGES3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCJ0-3", "protein_name": "Trinucleotide repeat-containing gene 6C protein", "gene_name": "TNRC6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92993-1", "protein_name": "Histone acetyltransferase KAT5", "gene_name": "KAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13547-1", "protein_name": "Histone deacetylase 1", "gene_name": "HDAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22415-1", "protein_name": "Upstream stimulatory factor 1", "gene_name": "USF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53539-1", "protein_name": "Protein FosB", "gene_name": "FOSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15648-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 1", "gene_name": "MED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13951-1", "protein_name": "Core-binding factor subunit beta", "gene_name": "CBFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3U4-1", "protein_name": "Cohesin subunit SA-2", "gene_name": "STAG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVM7-1", "protein_name": "Cohesin subunit SA-1", "gene_name": "STAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07654-1", "protein_name": "Trefoil factor 3", "gene_name": "TFF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04726-1", "protein_name": "Transducin-like enhancer protein 3", "gene_name": "TLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01135-1", "protein_name": "Protransforming growth factor alpha", "gene_name": "TGFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99966-1", "protein_name": "Cbp/p300-interacting transactivator 1", "gene_name": "CITED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q9-1", "protein_name": "Nuclear receptor coactivator 3", "gene_name": "NCOA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01196-1", "protein_name": "Runt-related transcription factor 1", "gene_name": "RUNX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14646-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4ZG55-1", "protein_name": "Protein GREB1", "gene_name": "GREB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15853-1", "protein_name": "Upstream stimulatory factor 2", "gene_name": "USF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00482-1", "protein_name": "Nuclear receptor subfamily 5 group A member 2", "gene_name": "NR5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14678-1", "protein_name": "KN motif and ankyrin repeat domain-containing protein 1", "gene_name": "KANK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99873-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "PRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10415-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "BCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC69-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "KCTD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23771-1", "protein_name": "Trans-acting T-cell-specific transcription factor GATA-3", "gene_name": "GATA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15169-1", "protein_name": "Axin-1", "gene_name": "AXIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10242-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LFL8-1", "protein_name": "CXXC-type zinc finger protein 5", "gene_name": "CXXC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04155-1", "protein_name": "Trefoil factor 1", "gene_name": "TFF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE1-1", "protein_name": "RNA helicase MOV-10", "gene_name": "MOV10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCL2-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "GPAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11103799", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"TNRC6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15185-1", "protein_name": "Prostaglandin E synthase 3", "gene_name": "PTGES3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCJ0-3", "protein_name": "Trinucleotide repeat-containing gene 6C protein", "gene_name": "TNRC6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92993-1", "protein_name": "Histone acetyltransferase KAT5", "gene_name": "KAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13547-1", "protein_name": "Histone deacetylase 1", "gene_name": "HDAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22415-1", "protein_name": "Upstream stimulatory factor 1", "gene_name": "USF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53539-1", "protein_name": "Protein FosB", "gene_name": "FOSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15648-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 1", "gene_name": "MED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13951-1", "protein_name": "Core-binding factor subunit beta", "gene_name": "CBFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3U4-1", "protein_name": "Cohesin subunit SA-2", "gene_name": "STAG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVM7-1", "protein_name": "Cohesin subunit SA-1", "gene_name": "STAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07654-1", "protein_name": "Trefoil factor 3", "gene_name": "TFF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04726-1", "protein_name": "Transducin-like enhancer protein 3", "gene_name": "TLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01135-1", "protein_name": "Protransforming growth factor alpha", "gene_name": "TGFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99966-1", "protein_name": "Cbp/p300-interacting transactivator 1", "gene_name": "CITED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q9-1", "protein_name": "Nuclear receptor coactivator 3", "gene_name": "NCOA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01196-1", "protein_name": "Runt-related transcription factor 1", "gene_name": "RUNX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14646-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4ZG55-1", "protein_name": "Protein GREB1", "gene_name": "GREB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15853-1", "protein_name": "Upstream stimulatory factor 2", "gene_name": "USF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00482-1", "protein_name": "Nuclear receptor subfamily 5 group A member 2", "gene_name": "NR5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14678-1", "protein_name": "KN motif and ankyrin repeat domain-containing protein 1", "gene_name": "KANK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99873-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "PRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10415-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "BCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC69-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "KCTD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23771-1", "protein_name": "Trans-acting T-cell-specific transcription factor GATA-3", "gene_name": "GATA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15169-1", "protein_name": "Axin-1", "gene_name": "AXIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10242-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LFL8-1", "protein_name": "CXXC-type zinc finger protein 5", "gene_name": "CXXC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04155-1", "protein_name": "Trefoil factor 1", "gene_name": "TFF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE1-1", "protein_name": "RNA helicase MOV-10", "gene_name": "MOV10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCL2-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "GPAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11136970", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptional activation of cathepsin D gene expression by 17beta-estradiol: mechanism of aryl hydrocarbon receptor-mediated inhibition.", "journal": "Molecular and cellular endocrinology", "date": "2001", "authors": "Wang F, Samudio I, Safe S", "reference": { "type": "PubMed", "id": "11165043", "url": "https://pubmed.ncbi.nlm.nih.gov/11165043" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75362-1", "protein_name": "Zinc finger protein 217", "gene_name": "ZNF217", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCK5-1", "protein_name": "Protein argonaute-4", "gene_name": "AGO4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92793-1", "protein_name": "CREB-binding protein", "gene_name": "CREBBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL18-1", "protein_name": "Protein argonaute-1", "gene_name": "AGO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ9-3", "protein_name": "Trinucleotide repeat-containing gene 6B protein", "gene_name": "TNRC6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15185-1", "protein_name": "Prostaglandin E synthase 3", "gene_name": "PTGES3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCJ0-3", "protein_name": "Trinucleotide repeat-containing gene 6C protein", "gene_name": "TNRC6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92993-1", "protein_name": "Histone acetyltransferase KAT5", "gene_name": "KAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13547-1", "protein_name": "Histone deacetylase 1", "gene_name": "HDAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22415-1", "protein_name": "Upstream stimulatory factor 1", "gene_name": "USF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53539-1", "protein_name": "Protein FosB", "gene_name": "FOSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15648-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 1", "gene_name": "MED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13951-1", "protein_name": "Core-binding factor subunit beta", "gene_name": "CBFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3U4-1", "protein_name": "Cohesin subunit SA-2", "gene_name": "STAG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVM7-1", "protein_name": "Cohesin subunit SA-1", "gene_name": "STAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07654-1", "protein_name": "Trefoil factor 3", "gene_name": "TFF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04726-1", "protein_name": "Transducin-like enhancer protein 3", "gene_name": "TLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01135-1", "protein_name": "Protransforming growth factor alpha", "gene_name": "TGFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99966-1", "protein_name": "Cbp/p300-interacting transactivator 1", "gene_name": "CITED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q9-1", "protein_name": "Nuclear receptor coactivator 3", "gene_name": "NCOA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01196-1", "protein_name": "Runt-related transcription factor 1", "gene_name": "RUNX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14646-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4ZG55-1", "protein_name": "Protein GREB1", "gene_name": "GREB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15853-1", "protein_name": "Upstream stimulatory factor 2", "gene_name": "USF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00482-1", "protein_name": "Nuclear receptor subfamily 5 group A member 2", "gene_name": "NR5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14678-1", "protein_name": "KN motif and ankyrin repeat domain-containing protein 1", "gene_name": "KANK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99873-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "PRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10415-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "BCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC69-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "KCTD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23771-1", "protein_name": "Trans-acting T-cell-specific transcription factor GATA-3", "gene_name": "GATA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15169-1", "protein_name": "Axin-1", "gene_name": "AXIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10242-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LFL8-1", "protein_name": "CXXC-type zinc finger protein 5", "gene_name": "CXXC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04155-1", "protein_name": "Trefoil factor 1", "gene_name": "TFF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE1-1", "protein_name": "RNA helicase MOV-10", "gene_name": "MOV10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCL2-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "GPAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11165043", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution.", "journal": "Science (New York, N.Y.)", "date": "2001", "authors": "Cramer P, Bushnell DA, Kornberg RD", "reference": { "type": "PubMed", "id": 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"uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14241-2", "protein_name": "Elongin-A", "gene_name": "ELOA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15369-1", "protein_name": "Elongin-C", "gene_name": "ELOC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B0-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase", "gene_name": "CTDP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08945-1", "protein_name": "FACT complex subunit SSRP1", "gene_name": "SSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40422-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "RPC10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CJ1-1", "protein_name": "ELL-associated factor 2", "gene_name": "EAF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15370-1", "protein_name": "Elongin-B", "gene_name": "ELOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03111-1", "protein_name": "Protein ENL", "gene_name": "MLLT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHB7-1", "protein_name": "AF4/FMR2 family member 4", "gene_name": "AFF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75909-3", "protein_name": "Cyclin-K", "gene_name": "CCNK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96JC9-1", "protein_name": "ELL-associated factor 1", "gene_name": "EAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WX92-2", "protein_name": "Negative elongation factor B", "gene_name": "NELFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96ST2-1", "protein_name": "Protein IWS1 homolog", "gene_name": "IWS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00267-1", "protein_name": "Transcription elongation factor SPT5", "gene_name": "SUPT5H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18615-1", "protein_name": "Negative elongation factor E", "gene_name": "NELFE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60583-1", "protein_name": "Cyclin-T2", "gene_name": "CCNT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B9-1", "protein_name": "FACT complex subunit SPT16", "gene_name": "SUPT16H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P2-1", "protein_name": "Negative elongation factor A", "gene_name": "NELFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZ85-1", "protein_name": "Transcription elongation factor SPT6", "gene_name": "SUPT6H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYF1-1", "protein_name": "Elongin-A2", "gene_name": "ELOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20435-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "RPO26", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38902-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11", "gene_name": "RPB11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04050-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "RPO21", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P08518-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "RPB2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P16370-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "RPB3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P20434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "RPB5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P20436-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "RPB8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P22139-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "RPB10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P27999-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "RPB9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P63272-1", "protein_name": "Transcription elongation factor SPT4", "gene_name": "SUPT4H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42568-1", "protein_name": "Protein AF-9", "gene_name": "MLLT3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11313498", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 66 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution.", "journal": "Science (New York, N.Y.)", "date": "2001", "authors": "Gnatt AL, Cramer P, Fu J, Bushnell DA, Kornberg RD", "reference": { "type": "PubMed", "id": "11313499", "url": "https://pubmed.ncbi.nlm.nih.gov/11313499" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXH7-1", "protein_name": "Negative elongation factor C/D", "gene_name": "NELFCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14241-2", "protein_name": "Elongin-A", "gene_name": "ELOA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15369-1", "protein_name": "Elongin-C", "gene_name": "ELOC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B0-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase", "gene_name": "CTDP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08945-1", "protein_name": "FACT complex subunit SSRP1", "gene_name": "SSRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40422-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "RPC10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CJ1-1", "protein_name": "ELL-associated factor 2", "gene_name": "EAF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N7H5-1", "protein_name": "RNA polymerase II-associated factor 1 homolog", "gene_name": "PAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD62-1", "protein_name": "RNA polymerase-associated protein CTR9 homolog", "gene_name": "CTR9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVC0-1", "protein_name": "RNA polymerase-associated protein LEO1", "gene_name": "LEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92541-1", "protein_name": "RNA polymerase-associated protein RTF1 homolog", "gene_name": "RTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15370-1", "protein_name": "Elongin-B", "gene_name": "ELOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03111-1", "protein_name": "Protein ENL", "gene_name": "MLLT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHB7-1", "protein_name": "AF4/FMR2 family member 4", "gene_name": "AFF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75909-3", "protein_name": "Cyclin-K", "gene_name": "CCNK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96JC9-1", "protein_name": "ELL-associated factor 1", "gene_name": "EAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WX92-2", "protein_name": "Negative elongation factor B", "gene_name": "NELFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96ST2-1", "protein_name": "Protein IWS1 homolog", "gene_name": "IWS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00267-1", "protein_name": "Transcription elongation factor SPT5", "gene_name": "SUPT5H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18615-1", "protein_name": "Negative elongation factor E", "gene_name": "NELFE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60583-1", "protein_name": "Cyclin-T2", "gene_name": "CCNT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B9-1", "protein_name": "FACT complex subunit SPT16", "gene_name": "SUPT16H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P2-1", "protein_name": "Negative elongation factor A", "gene_name": "NELFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZ85-1", "protein_name": "Transcription elongation factor SPT6", "gene_name": "SUPT6H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYF1-1", "protein_name": "Elongin-A2", "gene_name": "ELOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20435-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "RPO26", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38902-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11", "gene_name": "RPB11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04050-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "RPO21", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P08518-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "RPB2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P16370-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "RPB3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P20434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "RPB5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P20436-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "RPB8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P22139-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "RPB10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P27999-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "RPB9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P63272-1", "protein_name": "Transcription elongation factor SPT4", "gene_name": "SUPT4H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42568-1", "protein_name": "Protein AF-9", "gene_name": "MLLT3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11313499", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 66 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptional activation of genes by 17 beta-estradiol through estrogen receptor-Sp1 interactions.", "journal": "Vitamins and hormones", "date": "2001", "authors": "Safe S", "reference": { "type": "PubMed", "id": "11345900", "url": "https://pubmed.ncbi.nlm.nih.gov/11345900" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { 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"gene_name": "CITED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q9-1", "protein_name": "Nuclear receptor coactivator 3", "gene_name": "NCOA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01196-1", "protein_name": "Runt-related transcription factor 1", "gene_name": "RUNX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14646-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", 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"referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a p53 response element in the promoter region of the hMSH2 gene required for expression in A2780 ovarian cancer cells.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Warnick CT, Dabbas B, Ford CD, Strait KA", "reference": { "type": "PubMed", "id": "11350971", "url": "https://pubmed.ncbi.nlm.nih.gov/11350971" }, 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"uniprot_canonical_ac": "Q9HCK5-1", "protein_name": "Protein argonaute-4", "gene_name": "AGO4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92793-1", "protein_name": "CREB-binding protein", "gene_name": "CREBBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL18-1", "protein_name": "Protein argonaute-1", "gene_name": "AGO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ9-3", "protein_name": "Trinucleotide repeat-containing gene 6B protein", "gene_name": "TNRC6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15185-1", "protein_name": "Prostaglandin E synthase 3", "gene_name": "PTGES3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCJ0-3", "protein_name": "Trinucleotide repeat-containing gene 6C protein", "gene_name": "TNRC6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92993-1", "protein_name": "Histone 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3U4-1", "protein_name": "Cohesin subunit SA-2", "gene_name": "STAG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVM7-1", "protein_name": "Cohesin subunit SA-1", "gene_name": "STAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07654-1", "protein_name": "Trefoil factor 3", "gene_name": "TFF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04726-1", "protein_name": "Transducin-like enhancer protein 3", "gene_name": "TLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01135-1", "protein_name": "Protransforming growth factor alpha", "gene_name": "TGFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99966-1", "protein_name": "Cbp/p300-interacting transactivator 1", "gene_name": "CITED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q9-1", "protein_name": "Nuclear receptor coactivator 3", "gene_name": "NCOA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01196-1", "protein_name": "Runt-related transcription factor 1", "gene_name": "RUNX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14646-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4ZG55-1", "protein_name": "Protein GREB1", "gene_name": "GREB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15853-1", "protein_name": "Upstream stimulatory factor 2", "gene_name": "USF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00482-1", "protein_name": "Nuclear receptor subfamily 5 group A member 2", "gene_name": "NR5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14678-1", "protein_name": "KN motif and ankyrin repeat domain-containing protein 1", "gene_name": "KANK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99873-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "PRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10415-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "BCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC69-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "KCTD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23771-1", "protein_name": "Trans-acting T-cell-specific transcription factor GATA-3", "gene_name": "GATA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15169-1", "protein_name": "Axin-1", "gene_name": "AXIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10242-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LFL8-1", "protein_name": "CXXC-type zinc finger protein 5", "gene_name": "CXXC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04155-1", "protein_name": "Trefoil factor 1", "gene_name": "TFF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE1-1", "protein_name": "RNA helicase MOV-10", "gene_name": "MOV10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCL2-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "GPAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11410592", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of the open region of RNA polymerase II transcription complexes in the early phase of elongation.", "journal": "Nucleic acids research", "date": "2001", "authors": "Fiedler U, Timmers HT", "reference": { "type": "PubMed", "id": "11433015", "url": "https://pubmed.ncbi.nlm.nih.gov/11433015" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7C8-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15544-1", "protein_name": "Transcription initiation factor TFIID subunit 11", "gene_name": "TAF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VWG9-1", "protein_name": "Transcription initiation factor TFIID subunit 3", "gene_name": "TAF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16594-1", "protein_name": "Transcription initiation factor TFIID subunit 9", "gene_name": "TAF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15543-1", "protein_name": "Transcription initiation factor TFIID subunit 13", "gene_name": "TAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92750-1", "protein_name": "Transcription initiation factor TFIID subunit 4B", "gene_name": "TAF4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49848-1", "protein_name": "Transcription initiation factor TFIID subunit 6", "gene_name": "TAF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1X5-1", "protein_name": "Transcription initiation factor TFIID subunit 2", "gene_name": "TAF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29083-1", "protein_name": "General transcription factor IIE subunit 1", "gene_name": "GTF2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00268-1", "protein_name": "Transcription initiation factor TFIID subunit 4", "gene_name": "TAF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29084-1", "protein_name": "Transcription initiation factor IIE subunit beta", "gene_name": "GTF2E2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92804-1", "protein_name": "TATA-binding protein-associated factor 2N", "gene_name": "TAF15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16514-1", "protein_name": "Transcription initiation factor TFIID subunit 12", "gene_name": "TAF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21675-2", "protein_name": "Transcription initiation factor TFIID subunit 1", "gene_name": "TAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZX4-1", "protein_name": "Transcription initiation factor TFIID subunit 1-like", "gene_name": "TAF1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBM6-1", "protein_name": "Transcription initiation factor TFIID subunit 9B", "gene_name": "TAF9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12962-1", "protein_name": "Transcription initiation factor TFIID subunit 10", "gene_name": "TAF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00403-1", "protein_name": "Transcription initiation factor IIB", "gene_name": "GTF2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15542-1", "protein_name": "Transcription initiation factor TFIID subunit 5", "gene_name": "TAF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5H9L4-1", "protein_name": "Transcription initiation factor TFIID subunit 7-like", "gene_name": "TAF7L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15545-1", "protein_name": "Transcription initiation factor TFIID subunit 7", "gene_name": "TAF7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11433015", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 48 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Estrogen receptor interaction with estrogen response elements.", "journal": "Nucleic acids research", "date": "2001", "authors": "Klinge CM", "reference": { "type": "PubMed", "id": "11452016", "url": "https://pubmed.ncbi.nlm.nih.gov/11452016" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75362-1", "protein_name": "Zinc finger protein 217", "gene_name": "ZNF217", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCK5-1", "protein_name": "Protein argonaute-4", "gene_name": "AGO4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92793-1", "protein_name": "CREB-binding protein", "gene_name": "CREBBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL18-1", "protein_name": "Protein argonaute-1", "gene_name": "AGO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ9-3", "protein_name": "Trinucleotide repeat-containing gene 6B protein", "gene_name": "TNRC6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15185-1", "protein_name": "Prostaglandin E synthase 3", "gene_name": "PTGES3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCJ0-3", "protein_name": "Trinucleotide repeat-containing gene 6C protein", "gene_name": "TNRC6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92993-1", "protein_name": "Histone acetyltransferase KAT5", "gene_name": "KAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13547-1", "protein_name": "Histone deacetylase 1", "gene_name": "HDAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22415-1", "protein_name": "Upstream stimulatory factor 1", "gene_name": "USF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53539-1", "protein_name": "Protein FosB", "gene_name": "FOSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15648-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 1", "gene_name": "MED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13951-1", "protein_name": "Core-binding factor subunit beta", "gene_name": "CBFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3U4-1", "protein_name": "Cohesin subunit SA-2", "gene_name": "STAG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVM7-1", "protein_name": "Cohesin subunit SA-1", "gene_name": "STAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07654-1", "protein_name": "Trefoil factor 3", "gene_name": "TFF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04726-1", "protein_name": "Transducin-like enhancer protein 3", "gene_name": "TLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01135-1", "protein_name": "Protransforming growth factor alpha", "gene_name": "TGFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99966-1", "protein_name": "Cbp/p300-interacting transactivator 1", "gene_name": "CITED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q9-1", "protein_name": "Nuclear receptor coactivator 3", "gene_name": "NCOA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01196-1", "protein_name": "Runt-related transcription factor 1", "gene_name": "RUNX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14646-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4ZG55-1", "protein_name": "Protein GREB1", "gene_name": "GREB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15853-1", "protein_name": "Upstream stimulatory factor 2", "gene_name": "USF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00482-1", "protein_name": "Nuclear receptor subfamily 5 group A member 2", "gene_name": "NR5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14678-1", "protein_name": "KN motif and ankyrin repeat domain-containing protein 1", "gene_name": "KANK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99873-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "PRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10415-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "BCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC69-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "KCTD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23771-1", "protein_name": "Trans-acting T-cell-specific transcription factor GATA-3", "gene_name": "GATA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15169-1", "protein_name": "Axin-1", "gene_name": "AXIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10242-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LFL8-1", "protein_name": "CXXC-type zinc finger protein 5", "gene_name": "CXXC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04155-1", "protein_name": "Trefoil factor 1", "gene_name": "TFF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE1-1", "protein_name": "RNA helicase MOV-10", "gene_name": "MOV10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCL2-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "GPAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11452016", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Promoter clearance by RNA polymerase II is an extended, multistep process strongly affected by sequence.", "journal": "Molecular and cellular biology", "date": "2001", "authors": "Pal M, McKean D, Luse DS", "reference": { "type": "PubMed", "id": "11486021", "url": "https://pubmed.ncbi.nlm.nih.gov/11486021" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7C8-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15544-1", "protein_name": "Transcription initiation factor TFIID subunit 11", "gene_name": "TAF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VWG9-1", "protein_name": "Transcription initiation factor TFIID subunit 3", "gene_name": "TAF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16594-1", "protein_name": "Transcription initiation factor TFIID subunit 9", "gene_name": "TAF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15543-1", "protein_name": "Transcription initiation factor TFIID subunit 13", "gene_name": "TAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92750-1", "protein_name": "Transcription initiation factor TFIID subunit 4B", "gene_name": "TAF4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49848-1", "protein_name": "Transcription initiation factor TFIID subunit 6", "gene_name": "TAF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1X5-1", "protein_name": "Transcription initiation factor TFIID subunit 2", "gene_name": "TAF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29083-1", "protein_name": "General transcription factor IIE subunit 1", "gene_name": "GTF2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00268-1", "protein_name": "Transcription initiation factor TFIID subunit 4", "gene_name": "TAF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29084-1", "protein_name": "Transcription initiation factor IIE subunit beta", "gene_name": "GTF2E2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92804-1", "protein_name": "TATA-binding protein-associated factor 2N", "gene_name": "TAF15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16514-1", "protein_name": "Transcription initiation factor TFIID subunit 12", "gene_name": "TAF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21675-2", "protein_name": "Transcription initiation factor TFIID subunit 1", "gene_name": "TAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZX4-1", "protein_name": "Transcription initiation factor TFIID subunit 1-like", "gene_name": "TAF1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBM6-1", "protein_name": "Transcription initiation factor TFIID subunit 9B", "gene_name": "TAF9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12962-1", "protein_name": "Transcription initiation factor TFIID subunit 10", "gene_name": "TAF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00403-1", "protein_name": "Transcription initiation factor IIB", "gene_name": "GTF2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15542-1", "protein_name": "Transcription initiation factor TFIID subunit 5", "gene_name": "TAF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5H9L4-1", "protein_name": "Transcription initiation factor TFIID subunit 7-like", "gene_name": "TAF7L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15545-1", "protein_name": "Transcription initiation factor TFIID subunit 7", "gene_name": "TAF7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11486021", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 48 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Selective coactivation of estrogen-dependent transcription by CITED1 CBP/p300-binding protein.", "journal": "Genes & development", "date": "2001", "authors": "Yahata T, Shao W, Endoh H, Hur J, Coser KR, Sun H, Ueda Y, Kato S, Isselbacher KJ, Brown M, Shioda T", "reference": { "type": "PubMed", "id": "11581164", "url": "https://pubmed.ncbi.nlm.nih.gov/11581164" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75362-1", "protein_name": "Zinc finger protein 217", "gene_name": "ZNF217", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCK5-1", "protein_name": "Protein argonaute-4", "gene_name": "AGO4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92793-1", "protein_name": "CREB-binding protein", "gene_name": "CREBBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL18-1", "protein_name": "Protein argonaute-1", "gene_name": "AGO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ9-3", "protein_name": "Trinucleotide repeat-containing gene 6B protein", "gene_name": "TNRC6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15185-1", "protein_name": "Prostaglandin E synthase 3", "gene_name": "PTGES3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCJ0-3", "protein_name": "Trinucleotide repeat-containing gene 6C protein", "gene_name": "TNRC6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92993-1", "protein_name": "Histone acetyltransferase KAT5", "gene_name": "KAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99967-1", "protein_name": "Cbp/p300-interacting transactivator 2", "gene_name": "CITED2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13547-1", "protein_name": "Histone deacetylase 1", "gene_name": "HDAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P97769-1", "protein_name": "Cbp/p300-interacting transactivator 1", "gene_name": "Cited1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P22415-1", "protein_name": "Upstream stimulatory factor 1", "gene_name": "USF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53539-1", "protein_name": "Protein FosB", "gene_name": "FOSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15648-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 1", "gene_name": "MED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13951-1", "protein_name": "Core-binding factor subunit beta", "gene_name": "CBFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3U4-1", "protein_name": "Cohesin subunit SA-2", "gene_name": "STAG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVM7-1", "protein_name": "Cohesin subunit SA-1", "gene_name": "STAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07654-1", "protein_name": "Trefoil factor 3", "gene_name": "TFF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04726-1", "protein_name": "Transducin-like enhancer protein 3", "gene_name": "TLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01135-1", "protein_name": "Protransforming growth factor alpha", "gene_name": "TGFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99966-1", "protein_name": "Cbp/p300-interacting transactivator 1", "gene_name": "CITED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q9-1", "protein_name": "Nuclear receptor coactivator 3", "gene_name": "NCOA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01196-1", "protein_name": "Runt-related transcription factor 1", "gene_name": "RUNX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14646-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4ZG55-1", "protein_name": "Protein GREB1", "gene_name": "GREB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15853-1", "protein_name": "Upstream stimulatory factor 2", "gene_name": "USF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00482-1", "protein_name": "Nuclear receptor subfamily 5 group A member 2", "gene_name": "NR5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14678-1", "protein_name": "KN motif and ankyrin repeat domain-containing protein 1", "gene_name": "KANK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99873-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "PRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10415-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "BCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC69-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "KCTD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23771-1", "protein_name": "Trans-acting T-cell-specific transcription factor GATA-3", "gene_name": "GATA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15169-1", "protein_name": "Axin-1", "gene_name": "AXIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9WUL8-1", "protein_name": "Cbp/p300-interacting transactivator 4", "gene_name": "Cited4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10242-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LFL8-1", "protein_name": "CXXC-type zinc finger protein 5", "gene_name": "CXXC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04155-1", "protein_name": "Trefoil factor 1", "gene_name": "TFF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE1-1", "protein_name": "RNA helicase MOV-10", "gene_name": "MOV10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCL2-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "GPAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9I8K7-1", "protein_name": "Cbp/p300-interacting transactivator 3", "gene_name": "CITED3", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 155, "end_pos": 156, "sequence_org": "EE", "sequence_mut": "AA", "comment": "Does not inhibit interaction with ESR1 and ER-coactivation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q99966", "url": "https://www.uniprot.org/uniprotkb/Q99966" }, { "database": "PubMed", "id": "11581164", "url": "https://pubmed.ncbi.nlm.nih.gov/11581164" } ], "uniprot_canonical_ac": "Q99966-1" }, { "start_pos": 157, "end_pos": 158, "sequence_org": "VL", "sequence_mut": "AA", "comment": "Inhibits interaction with ESR1 and ER-coactivation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q99966", "url": "https://www.uniprot.org/uniprotkb/Q99966" }, { "database": "PubMed", "id": "11581164", "url": "https://pubmed.ncbi.nlm.nih.gov/11581164" } ], "uniprot_canonical_ac": "Q99966-1" }, { "start_pos": 159, "end_pos": 160, "sequence_org": "MS", "sequence_mut": "AA", "comment": "Does not inhibit interaction with ESR1 and ER-coactivation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q99966", "url": "https://www.uniprot.org/uniprotkb/Q99966" }, { "database": "PubMed", "id": "11581164", "url": "https://pubmed.ncbi.nlm.nih.gov/11581164" } ], "uniprot_canonical_ac": "Q99966-1" }, { "start_pos": 161, "end_pos": 162, "sequence_org": "LV", "sequence_mut": "AA", "comment": "Does not inhibit interaction with ESR1 and ER-coactivation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q99966", "url": "https://www.uniprot.org/uniprotkb/Q99966" }, { "database": "PubMed", "id": "11581164", "url": "https://pubmed.ncbi.nlm.nih.gov/11581164" } ], "uniprot_canonical_ac": "Q99966-1" }, { "start_pos": 163, "end_pos": 164, "sequence_org": "VE", "sequence_mut": "AA", "comment": "Does not inhibit interaction with ESR1 and ER-coactivation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q99966", "url": "https://www.uniprot.org/uniprotkb/Q99966" }, { "database": "PubMed", "id": "11581164", "url": "https://pubmed.ncbi.nlm.nih.gov/11581164" } ], "uniprot_canonical_ac": "Q99966-1" }, { "start_pos": 165, "end_pos": 165, "sequence_org": "L", "sequence_mut": "A", "comment": "Does not inhibit interaction with ESR1 and ER-coactivation activity. Localizes mainly in the nucleus; when associated with A-167.", "evidence": [ { "database": "UniProtKB", "id": "Q99966", "url": "https://www.uniprot.org/uniprotkb/Q99966" }, { "database": "PubMed", "id": "11581164", "url": "https://pubmed.ncbi.nlm.nih.gov/11581164" } ], "uniprot_canonical_ac": "Q99966-1" }, { "start_pos": 166, "end_pos": 167, "sequence_org": "GL", "sequence_mut": "AA", "comment": "Does not inhibit interaction with ESR1 and ER-coactivation activity. Localizes mainly in the nucleus; when associated with A-165.", "evidence": [ { "database": "UniProtKB", "id": "Q99966", "url": "https://www.uniprot.org/uniprotkb/Q99966" }, { "database": "PubMed", "id": "11581164", "url": "https://pubmed.ncbi.nlm.nih.gov/11581164" } ], "uniprot_canonical_ac": "Q99966-1" } ], "record_id": "pubmed.11581164", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 121 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Synergism between ERalpha transactivation function 1 (AF-1) and AF-2 mediated by steroid receptor coactivator protein-1: requirement for the AF-1 alpha-helical core and for a direct interaction between the N- and C-terminal domains.", "journal": "Molecular endocrinology (Baltimore, Md.)", "date": "2001", "authors": "Metivier R, Penot G, Flouriot G, Pakdel F", "reference": { "type": "PubMed", "id": "11682626", "url": "https://pubmed.ncbi.nlm.nih.gov/11682626" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, 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"gene_name": "TFF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04726-1", "protein_name": "Transducin-like enhancer protein 3", "gene_name": "TLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": 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}, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A 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"protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCL2-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "GPAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11682626", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Strong natural pausing by RNA polymerase II within 10 bases of transcription start may result in repeated slippage and reextension of the nascent RNA.", "journal": "Molecular and cellular biology", "date": "2002", "authors": "Pal M, Luse DS", "reference": { "type": "PubMed", "id": "11739720", "url": "https://pubmed.ncbi.nlm.nih.gov/11739720" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7C8-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15544-1", "protein_name": "Transcription initiation factor TFIID subunit 11", "gene_name": "TAF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VWG9-1", "protein_name": "Transcription initiation factor TFIID subunit 3", "gene_name": "TAF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16594-1", "protein_name": "Transcription initiation factor TFIID subunit 9", "gene_name": "TAF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15543-1", "protein_name": "Transcription initiation factor TFIID subunit 13", "gene_name": "TAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92750-1", "protein_name": "Transcription initiation factor TFIID subunit 4B", "gene_name": "TAF4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49848-1", "protein_name": "Transcription initiation factor TFIID subunit 6", "gene_name": "TAF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1X5-1", "protein_name": "Transcription initiation factor TFIID subunit 2", "gene_name": "TAF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29083-1", "protein_name": "General transcription factor IIE subunit 1", "gene_name": "GTF2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00268-1", "protein_name": "Transcription initiation factor TFIID subunit 4", "gene_name": "TAF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29084-1", "protein_name": "Transcription initiation factor IIE subunit beta", "gene_name": "GTF2E2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92804-1", "protein_name": "TATA-binding protein-associated factor 2N", "gene_name": "TAF15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16514-1", "protein_name": "Transcription initiation factor TFIID subunit 12", "gene_name": "TAF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21675-2", "protein_name": "Transcription initiation factor TFIID subunit 1", "gene_name": "TAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZX4-1", "protein_name": "Transcription initiation factor TFIID subunit 1-like", "gene_name": "TAF1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBM6-1", "protein_name": "Transcription initiation factor TFIID subunit 9B", "gene_name": "TAF9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12962-1", "protein_name": "Transcription initiation factor TFIID subunit 10", "gene_name": "TAF10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00403-1", "protein_name": "Transcription initiation factor IIB", "gene_name": "GTF2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15542-1", "protein_name": "Transcription initiation factor TFIID subunit 5", "gene_name": "TAF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5H9L4-1", "protein_name": "Transcription initiation factor TFIID subunit 7-like", "gene_name": "TAF7L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15545-1", "protein_name": "Transcription initiation factor TFIID subunit 7", "gene_name": "TAF7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11739720", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 48 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Translocation after synthesis of a four-nucleotide RNA commits RNA polymerase II to promoter escape.", "journal": "Molecular and cellular biology", "date": "2002", "authors": "Kugel JF, Goodrich JA", "reference": { "type": "PubMed", "id": "11784853", "url": "https://pubmed.ncbi.nlm.nih.gov/11784853" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7C8-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15544-1", "protein_name": "Transcription initiation factor TFIID subunit 11", "gene_name": "TAF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VWG9-1", "protein_name": "Transcription initiation factor TFIID subunit 3", "gene_name": "TAF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16594-1", "protein_name": "Transcription initiation factor TFIID subunit 9", "gene_name": "TAF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15543-1", "protein_name": "Transcription initiation factor TFIID subunit 13", "gene_name": "TAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92750-1", "protein_name": "Transcription initiation factor TFIID subunit 4B", "gene_name": "TAF4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49848-1", "protein_name": "Transcription initiation factor TFIID subunit 6", "gene_name": "TAF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1X5-1", "protein_name": "Transcription initiation factor TFIID subunit 2", "gene_name": "TAF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29083-1", "protein_name": "General transcription factor IIE subunit 1", "gene_name": 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystallization of the Oct-1/SNAP190 peptide/DNA complex.", "journal": "Acta crystallographica. Section D, Biological crystallography", "date": "2002", "authors": "Hovde S, Brooks A, Strong K, Geiger JH", "reference": { "type": "PubMed", "id": "11856838", "url": "https://pubmed.ncbi.nlm.nih.gov/11856838" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7C8-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", 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"protein_name": "Cyclin-K", "gene_name": "CCNK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96JC9-1", "protein_name": "ELL-associated factor 1", "gene_name": "EAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92804-1", "protein_name": "TATA-binding protein-associated factor 2N", "gene_name": "TAF15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J9-1", "protein_name": "Parafibromin", "gene_name": "CDC73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WX92-2", "protein_name": "Negative elongation factor B", "gene_name": "NELFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96ST2-1", "protein_name": "Protein IWS1 homolog", "gene_name": "IWS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18615-1", "protein_name": "Negative elongation factor E", "gene_name": "NELFE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60583-1", "protein_name": "Cyclin-T2", "gene_name": "CCNT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00403-1", "protein_name": "Transcription initiation factor IIB", "gene_name": "GTF2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B9-1", "protein_name": "FACT complex subunit SPT16", "gene_name": "SUPT16H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P2-1", "protein_name": "Negative elongation factor A", "gene_name": "NELFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZ85-1", 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"protein_name": "Transcription elongation factor SPT5", "gene_name": "SUPT5H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18615-1", "protein_name": "Negative elongation factor E", "gene_name": "NELFE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60583-1", "protein_name": "Cyclin-T2", "gene_name": "CCNT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00403-1", "protein_name": "Transcription initiation factor IIB", "gene_name": "GTF2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B9-1", "protein_name": "FACT complex subunit SPT16", "gene_name": "SUPT16H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P2-1", "protein_name": "Negative elongation factor A", "gene_name": "NELFA", "tax_name": 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"uniprot_canonical_ac": "Q15545-1", "protein_name": "Transcription initiation factor TFIID subunit 7", "gene_name": "TAF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42568-1", "protein_name": "Protein AF-9", "gene_name": "MLLT3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11884399", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 82 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "p53 Binds and activates the xeroderma pigmentosum DDB2 gene in humans but not mice.", "journal": "Molecular and cellular biology", "date": "2002", "authors": "Tan T, Chu G", "reference": { "type": "PubMed", "id": "11971958", "url": "https://pubmed.ncbi.nlm.nih.gov/11971958" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", 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"protein_name": "Mediator of DNA damage checkpoint protein 1", "gene_name": "MDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15370-1", "protein_name": "Elongin-B", "gene_name": "ELOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13535-1", "protein_name": "Serine/threonine-protein kinase ATR", "gene_name": "ATR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": 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"protein_name": "Fanconi anemia group D2 protein", "gene_name": "FANCD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14004-1", "protein_name": "Cyclin-dependent kinase 13", "gene_name": "CDK13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18615-1", "protein_name": "Negative elongation factor E", "gene_name": "NELFE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYV4-1", "protein_name": "Cyclin-dependent kinase 12", "gene_name": "CDK12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60583-1", "protein_name": "Cyclin-T2", "gene_name": "CCNT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43246-1", "protein_name": "DNA mismatch repair protein Msh2", "gene_name": "MSH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B9-1", "protein_name": "FACT complex subunit SPT16", "gene_name": "SUPT16H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54278-1", "protein_name": "Mismatch repair endonuclease PMS2", "gene_name": "PMS2", "tax_name": "Human" }, { 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"uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3B4-1", "protein_name": "Nucleoporin p54", "gene_name": "NUP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12270-1", "protein_name": "Nucleoprotein TPR", "gene_name": "TPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37198-1", "protein_name": "Nuclear pore glycoprotein p62", "gene_name": "NUP62", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12072510", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"https://pubmed.ncbi.nlm.nih.gov/12370301" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXH7-1", "protein_name": "Negative elongation factor C/D", "gene_name": "NELFCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B0-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase", "gene_name": "CTDP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WX92-2", "protein_name": "Negative elongation factor B", "gene_name": "NELFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00267-1", "protein_name": "Transcription elongation factor SPT5", "gene_name": "SUPT5H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18615-1", "protein_name": "Negative elongation factor E", "gene_name": "NELFE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P2-1", "protein_name": "Negative elongation factor A", "gene_name": "NELFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63272-1", "protein_name": "Transcription elongation factor SPT4", "gene_name": "SUPT4H1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12370301", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 33 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A Non-sequence-specific double-stranded RNA structural element regulates splicing of two mutually exclusive exons of fibroblast growth factor receptor 2 (FGFR2).", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Muh SJ, Hovhannisyan RH, Carstens RP", "reference": { "type": "PubMed", "id": "12393912", "url": "https://pubmed.ncbi.nlm.nih.gov/12393912" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01085-1", "protein_name": "Nucleolysin TIAR", "gene_name": "TIAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43251-1", "protein_name": "RNA binding protein fox-1 homolog 2", "gene_name": "RBFOX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31483-1", "protein_name": "Cytotoxic granule associated RNA binding protein TIA1", "gene_name": "TIA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NXG1-1", "protein_name": "Epithelial splicing regulatory protein 1", "gene_name": "ESRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6T0-1", "protein_name": "Epithelial splicing regulatory protein 2", "gene_name": "ESRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12393912", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 26 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Activator recruitment by the general transcription machinery: X-ray structural analysis of the Oct-1 POU domain/human U1 octamer/SNAP190 peptide ternary complex.", "journal": "Genes & development", "date": "2002", "authors": "Hovde S, Hinkley CS, Strong K, Brooks A, Gu L, Henry RW, Geiger J", "reference": { "type": "PubMed", "id": "12414730", "url": "https://pubmed.ncbi.nlm.nih.gov/12414730" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", 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"protein_name": "Regulation of nuclear pre-mRNA domain-containing protein 2", "gene_name": "RPRD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVM9-1", "protein_name": "Integrator complex subunit 13", "gene_name": "INTS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SY0-1", "protein_name": "Integrator complex subunit 14", "gene_name": "INTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HW7-1", "protein_name": "Integrator complex subunit 4", "gene_name": "INTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N201-1", "protein_name": "Integrator complex subunit 1", "gene_name": "INTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2F5-1", "protein_name": "Little elongation complex subunit 1", "gene_name": "ICE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16594-1", "protein_name": "Transcription initiation factor TFIID subunit 9", "gene_name": "TAF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15543-1", "protein_name": "Transcription initiation factor TFIID subunit 13", "gene_name": "TAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09086-1", "protein_name": "POU domain, class 2, transcription factor 2", "gene_name": "POU2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52747-1", "protein_name": "Zinc finger protein 143", "gene_name": "ZNF143", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQG5-1", "protein_name": "Regulation of nuclear pre-mRNA domain-containing protein 1B", "gene_name": "RPRD1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP77-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "SSU72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SXM2-1", "protein_name": "snRNA-activating protein complex subunit 4", "gene_name": "SNAPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16533-1", "protein_name": "snRNA-activating protein complex subunit 1", "gene_name": "SNAPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ15-1", "protein_name": "SOSS complex subunit B1", "gene_name": "NABP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV88-1", "protein_name": "Integrator complex subunit 9", "gene_name": "INTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXW5-1", "protein_name": "Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2", "gene_name": "RPAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13487-1", "protein_name": "snRNA-activating protein complex subunit 2", "gene_name": "SNAPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49848-1", "protein_name": "Transcription initiation factor TFIID subunit 6", "gene_name": "TAF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29083-1", "protein_name": "General transcription factor IIE subunit 1", "gene_name": "GTF2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29084-1", "protein_name": "Transcription initiation factor IIE subunit beta", "gene_name": "GTF2E2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75971-1", "protein_name": "snRNA-activating protein complex subunit 5", "gene_name": "SNAPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75909-3", "protein_name": "Cyclin-K", "gene_name": "CCNK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TA45-1", "protein_name": "Integrator complex subunit 11", "gene_name": "INTS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5P1-1", "protein_name": "Zinc finger CCCH domain-containing protein 8", "gene_name": "ZC3H8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVH2-1", "protein_name": "Integrator complex subunit 7", "gene_name": "INTS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q659A1-1", "protein_name": "Little elongation complex subunit 2", "gene_name": "ICE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CB8-1", "protein_name": "Integrator complex subunit 12", "gene_name": "INTS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H814-1", "protein_name": "Phosphorylated adapter RNA export protein", "gene_name": "PHAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AH0-1", "protein_name": "SOSS complex subunit B2", "gene_name": "NABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL03-1", "protein_name": "Integrator complex subunit 6", "gene_name": "INTS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68E01-1", "protein_name": "Integrator complex subunit 3", "gene_name": "INTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0H0-1", "protein_name": "Integrator complex subunit 2", "gene_name": "INTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVR2-1", "protein_name": "Integrator complex subunit 10", "gene_name": "INTS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P9B9-1", "protein_name": "Integrator complex subunit 5", "gene_name": "INTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00267-1", "protein_name": "Transcription elongation factor SPT5", "gene_name": "SUPT5H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60583-1", "protein_name": "Cyclin-T2", "gene_name": "CCNT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92966-1", "protein_name": "snRNA-activating protein complex subunit 3", "gene_name": "SNAPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00472-1", "protein_name": "RNA polymerase II elongation factor ELL2", "gene_name": "ELL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HB65-1", "protein_name": "RNA polymerase II elongation factor ELL3", "gene_name": "ELL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00403-1", "protein_name": "Transcription initiation factor IIB", "gene_name": "GTF2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P16-1", "protein_name": "Regulation of nuclear pre-mRNA domain-containing protein 1A", "gene_name": "RPRD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75QN2-1", "protein_name": "Integrator complex subunit 8", "gene_name": "INTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15542-1", "protein_name": "Transcription initiation factor TFIID subunit 5", "gene_name": "TAF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63272-1", "protein_name": "Transcription elongation factor SPT4", "gene_name": "SUPT4H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12414730", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 74 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crosstalk between CARM1 methylation and CBP acetylation on histone H3.", "journal": "Current biology : CB", "date": "2002", "authors": "Daujat S, Bauer UM, Shah V, Turner B, Berger S, Kouzarides T", "reference": { "type": "PubMed", "id": "12498683", "url": "https://pubmed.ncbi.nlm.nih.gov/12498683" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { 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II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13547-1", "protein_name": "Histone deacetylase 1", "gene_name": "HDAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22415-1", "protein_name": "Upstream stimulatory factor 1", "gene_name": "USF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53539-1", "protein_name": "Protein FosB", "gene_name": "FOSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15648-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 1", "gene_name": "MED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13951-1", "protein_name": "Core-binding factor subunit beta", "gene_name": "CBFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3U4-1", "protein_name": "Cohesin subunit SA-2", "gene_name": "STAG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVM7-1", "protein_name": "Cohesin subunit SA-1", "gene_name": "STAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07654-1", "protein_name": "Trefoil factor 3", "gene_name": "TFF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04726-1", "protein_name": "Transducin-like enhancer protein 3", "gene_name": "TLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01135-1", "protein_name": "Protransforming growth factor alpha", "gene_name": "TGFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99966-1", "protein_name": "Cbp/p300-interacting transactivator 1", "gene_name": "CITED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q9-1", "protein_name": "Nuclear receptor coactivator 3", "gene_name": "NCOA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01196-1", "protein_name": "Runt-related transcription factor 1", "gene_name": "RUNX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14646-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4ZG55-1", "protein_name": "Protein GREB1", "gene_name": "GREB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15853-1", "protein_name": "Upstream stimulatory factor 2", "gene_name": "USF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00482-1", "protein_name": "Nuclear receptor subfamily 5 group A member 2", "gene_name": "NR5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14678-1", "protein_name": "KN motif and ankyrin repeat domain-containing protein 1", "gene_name": "KANK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99873-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "PRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10415-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "BCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC69-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "KCTD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23771-1", "protein_name": "Trans-acting T-cell-specific transcription factor GATA-3", "gene_name": "GATA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15169-1", "protein_name": "Axin-1", "gene_name": "AXIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84228-1", "protein_name": "Histone H3.2", "gene_name": "H3c13; H3c14; H3c15; H3c2; H3c3; H3c4; H3c6; H3c7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68433-1", "protein_name": "Histone H3.1", "gene_name": "H3c10; H3c11; H3c1; H3c8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P10242-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LFL8-1", "protein_name": "CXXC-type zinc finger protein 5", "gene_name": "CXXC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04155-1", "protein_name": "Trefoil factor 1", "gene_name": "TFF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE1-1", "protein_name": "RNA helicase MOV-10", "gene_name": "MOV10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCL2-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "GPAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9WVG6-1", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "Carm1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12498683", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 121 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The C-terminal domain of pol II and a DRB-sensitive kinase are required for 3' processing of U2 snRNA.", "journal": "The EMBO journal", "date": "2003", "authors": "Medlin JE, Uguen P, Taylor A, Bentley DL, Murphy S", "reference": { "type": "PubMed", "id": "12574128", "url": "https://pubmed.ncbi.nlm.nih.gov/12574128" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7C8-1", "protein_name": "Transcription initiation factor TFIID subunit 8", "gene_name": "TAF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15544-1", "protein_name": "Transcription initiation factor TFIID subunit 11", "gene_name": "TAF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VT52-1", "protein_name": "Regulation of nuclear pre-mRNA domain-containing protein 2", "gene_name": "RPRD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVM9-1", "protein_name": "Integrator complex subunit 13", "gene_name": "INTS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SY0-1", "protein_name": "Integrator complex subunit 14", "gene_name": "INTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HW7-1", "protein_name": "Integrator complex subunit 4", "gene_name": "INTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N201-1", "protein_name": "Integrator complex subunit 1", "gene_name": "INTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2F5-1", "protein_name": "Little elongation complex subunit 1", "gene_name": "ICE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16594-1", "protein_name": "Transcription initiation factor TFIID subunit 9", "gene_name": "TAF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15543-1", "protein_name": "Transcription initiation factor TFIID subunit 13", "gene_name": "TAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09086-1", "protein_name": "POU domain, class 2, transcription factor 2", "gene_name": "POU2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52747-1", "protein_name": "Zinc finger protein 143", "gene_name": "ZNF143", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQG5-1", "protein_name": "Regulation of nuclear pre-mRNA domain-containing protein 1B", "gene_name": "RPRD1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP77-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "SSU72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SXM2-1", "protein_name": "snRNA-activating protein complex subunit 4", "gene_name": "SNAPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16533-1", "protein_name": "snRNA-activating protein complex subunit 1", "gene_name": "SNAPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ15-1", "protein_name": "SOSS complex subunit B1", "gene_name": "NABP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV88-1", "protein_name": "Integrator complex subunit 9", "gene_name": "INTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXW5-1", "protein_name": "Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2", "gene_name": "RPAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13487-1", "protein_name": "snRNA-activating protein complex subunit 2", "gene_name": "SNAPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49848-1", "protein_name": "Transcription initiation factor TFIID subunit 6", "gene_name": "TAF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29083-1", "protein_name": "General transcription factor IIE subunit 1", "gene_name": "GTF2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29084-1", "protein_name": "Transcription initiation factor IIE subunit beta", "gene_name": "GTF2E2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75971-1", "protein_name": "snRNA-activating protein complex subunit 5", "gene_name": "SNAPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75909-3", "protein_name": "Cyclin-K", "gene_name": "CCNK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TA45-1", "protein_name": "Integrator complex subunit 11", "gene_name": "INTS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5P1-1", "protein_name": "Zinc finger CCCH domain-containing protein 8", "gene_name": "ZC3H8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVH2-1", "protein_name": "Integrator complex subunit 7", "gene_name": "INTS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q659A1-1", "protein_name": "Little elongation complex subunit 2", "gene_name": "ICE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CB8-1", "protein_name": "Integrator complex subunit 12", "gene_name": "INTS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H814-1", "protein_name": "Phosphorylated adapter RNA export protein", "gene_name": "PHAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AH0-1", "protein_name": "SOSS complex subunit B2", "gene_name": "NABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL03-1", "protein_name": "Integrator complex subunit 6", "gene_name": "INTS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68E01-1", "protein_name": "Integrator complex subunit 3", "gene_name": "INTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0H0-1", "protein_name": "Integrator complex subunit 2", "gene_name": "INTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVR2-1", "protein_name": "Integrator complex subunit 10", "gene_name": "INTS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P9B9-1", "protein_name": "Integrator complex subunit 5", "gene_name": "INTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00267-1", "protein_name": "Transcription elongation factor SPT5", "gene_name": "SUPT5H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60583-1", "protein_name": "Cyclin-T2", "gene_name": "CCNT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92966-1", "protein_name": "snRNA-activating protein complex subunit 3", "gene_name": "SNAPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00472-1", "protein_name": "RNA polymerase II elongation factor ELL2", "gene_name": "ELL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HB65-1", "protein_name": "RNA polymerase II elongation factor ELL3", "gene_name": "ELL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00403-1", "protein_name": "Transcription initiation factor IIB", "gene_name": "GTF2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P16-1", "protein_name": "Regulation of nuclear pre-mRNA domain-containing protein 1A", "gene_name": "RPRD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75QN2-1", "protein_name": "Integrator complex subunit 8", "gene_name": "INTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15542-1", "protein_name": "Transcription initiation factor TFIID subunit 5", "gene_name": "TAF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63272-1", "protein_name": "Transcription elongation factor SPT4", "gene_name": "SUPT4H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12574128", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 74 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two domains of the progesterone receptor interact with the estrogen receptor and are required for progesterone activation of the c-Src/Erk pathway in mammalian cells.", "journal": "Molecular and cellular biology", "date": "2003", "authors": "Ballare C, Uhrig M, Bechtold T, Sancho E, Di Domenico M, Migliaccio A, Auricchio F, Beato M", "reference": { "type": "PubMed", "id": "12612073", "url": "https://pubmed.ncbi.nlm.nih.gov/12612073" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48061-1", "protein_name": "Stromal cell-derived factor 1", "gene_name": "CXCL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75362-1", "protein_name": "Zinc finger protein 217", "gene_name": "ZNF217", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCK5-1", "protein_name": "Protein argonaute-4", "gene_name": "AGO4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92793-1", "protein_name": "CREB-binding protein", "gene_name": "CREBBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL18-1", "protein_name": "Protein argonaute-1", "gene_name": "AGO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPQ9-3", "protein_name": "Trinucleotide repeat-containing gene 6B protein", "gene_name": "TNRC6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15185-1", "protein_name": "Prostaglandin E synthase 3", "gene_name": "PTGES3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCJ0-3", "protein_name": "Trinucleotide repeat-containing gene 6C protein", "gene_name": "TNRC6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92993-1", "protein_name": "Histone acetyltransferase KAT5", "gene_name": "KAT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13547-1", "protein_name": "Histone deacetylase 1", "gene_name": "HDAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22415-1", "protein_name": "Upstream stimulatory factor 1", "gene_name": "USF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53539-1", "protein_name": "Protein FosB", "gene_name": "FOSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15648-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 1", "gene_name": "MED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13951-1", "protein_name": "Core-binding factor subunit beta", "gene_name": "CBFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3U4-1", "protein_name": "Cohesin subunit SA-2", "gene_name": "STAG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVM7-1", "protein_name": "Cohesin subunit SA-1", "gene_name": "STAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07654-1", "protein_name": "Trefoil factor 3", "gene_name": "TFF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04726-1", "protein_name": "Transducin-like enhancer protein 3", "gene_name": "TLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14683-1", "protein_name": "Structural maintenance of chromosomes protein 1A", "gene_name": "SMC1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01135-1", "protein_name": "Protransforming growth factor alpha", "gene_name": "TGFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99966-1", "protein_name": "Cbp/p300-interacting transactivator 1", "gene_name": "CITED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q9-1", "protein_name": "Nuclear receptor coactivator 3", "gene_name": "NCOA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50750-1", "protein_name": "Cyclin-dependent kinase 9", "gene_name": "CDK9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01196-1", "protein_name": "Runt-related transcription factor 1", "gene_name": "RUNX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14646-1", "protein_name": "ATP-dependent chromatin remodeler CHD1", "gene_name": "CHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X55-3", "protein_name": "Histone-arginine methyltransferase CARM1", "gene_name": "CARM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94953-1", "protein_name": "Lysine-specific demethylase 4B", "gene_name": "KDM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4ZG55-1", "protein_name": "Protein GREB1", "gene_name": "GREB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15853-1", "protein_name": "Upstream stimulatory factor 2", "gene_name": "USF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00482-1", "protein_name": "Nuclear receptor subfamily 5 group A member 2", "gene_name": "NR5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20226-1", "protein_name": "TATA-box-binding protein", "gene_name": "TBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60341-1", "protein_name": "Lysine-specific histone demethylase 1A", "gene_name": "KDM1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14678-1", "protein_name": "KN motif and ankyrin repeat domain-containing protein 1", "gene_name": "KANK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99873-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "PRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48552-1", "protein_name": "Nuclear receptor-interacting protein 1", "gene_name": "NRIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09472-1", "protein_name": "Histone acetyltransferase p300", "gene_name": "EP300", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03372-1", "protein_name": "Estrogen receptor", "gene_name": "ESR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10415-1", "protein_name": "Apoptosis regulator Bcl-2", "gene_name": "BCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC69-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "KCTD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23771-1", "protein_name": "Trans-acting T-cell-specific transcription factor GATA-3", "gene_name": "GATA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15169-1", "protein_name": "Axin-1", "gene_name": "AXIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02790-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP4", "gene_name": "FKBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55317-1", "protein_name": "Hepatocyte nuclear factor 3-alpha", "gene_name": "FOXA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17535-1", "protein_name": "Transcription factor JunD", "gene_name": "JUND", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60563-1", "protein_name": "Cyclin-T1", "gene_name": "CCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24385-1", "protein_name": "G1/S-specific cyclin-D1", "gene_name": "CCND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10242-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LFL8-1", "protein_name": "CXXC-type zinc finger protein 5", "gene_name": "CXXC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06401-1", "protein_name": "Progesterone receptor", "gene_name": "PGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60216-1", "protein_name": "Double-strand-break repair protein rad21 homolog", "gene_name": "RAD21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04155-1", "protein_name": "Trefoil factor 1", "gene_name": "TFF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCE1-1", "protein_name": "RNA helicase MOV-10", "gene_name": "MOV10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01106-2", "protein_name": "Myc proto-oncogene protein", "gene_name": "MYC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCL2-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "GPAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00559-1", "protein_name": "Receptor-binding cancer antigen expressed on SiSo cells", "gene_name": "EBAG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92831-1", "protein_name": "Histone acetyltransferase KAT2B", "gene_name": "KAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQE7-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52655-1", "protein_name": "Transcription initiation factor IIA subunit 1", "gene_name": "GTF2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01100-1", "protein_name": "Protein c-Fos", "gene_name": "FOS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P13984", "url": "https://www.uniprot.org/uniprotkb/P13984" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12612073", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]