[ { "title": "Gene-expression analysis of hair cell regeneration in the zebrafish lateral line.", "journal": "Proc. Natl. Acad. Sci. 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"journal": "Biomed Res Int", "date": "2021", "authors": "Li Li-Ping, Zhong Jing, Li Mei-Hang, Sun Yuan-Chao, Niu Yu-Juan, Wu Chuan-Hong, Zhou Jian-Feng, Norton Nadine, Li Zhi-Qiang, Shi Yong-Yong, Xu Xiao-Lei, Ding Yong-He", "reference": { "type": "PubMed", "id": "34327238", "url": "https://pubmed.ncbi.nlm.nih.gov/34327238" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32T9H0-1", "protein_name": "MAP7 domain-containing protein 1a isoform X1", "gene_name": "map7d1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N882-1", "protein_name": "Alpha-actinin-2b", "gene_name": "actn2b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32T9H0", "url": "https://www.uniprot.org/uniprotkb/A0AB32T9H0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34327238", "abstract": "", 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Biol.", "date": "2008", "authors": "Bonner Jennifer, Gribble Suzanna L, Veien Eric S, Nikolaus O Brant, Weidinger Gilbert, Dorsky Richard I", "reference": { "type": "PubMed", "id": "18062957", "url": "https://pubmed.ncbi.nlm.nih.gov/18062957" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TAA1-1", "protein_name": "Transcription factor 7 isoform X1", "gene_name": "tcf7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IY89-1", "protein_name": "Homeobox protein Nkx-6.2", "gene_name": "nkx6.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TAA1", "url": "https://www.uniprot.org/uniprotkb/A0AB32TAA1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18062957", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Res.", "date": "2021", "authors": "Bek Jan Willem, Shochat Chen, De Clercq Adelbert, De Saffel Hanna, Boel Annekatrien, Metz Juriaan, Rodenburg Frans, Karasik David, Willaert Andy, Coucke Paul J", "reference": { "type": "PubMed", "id": "33957005", "url": "https://pubmed.ncbi.nlm.nih.gov/33957005" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TAA1-1", "protein_name": "Transcription factor 7 isoform X1", "gene_name": "tcf7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P605-1", "protein_name": "Dickkopf WNT signaling pathway inhibitor 1a precursor", "gene_name": "dkk1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TAA1", "url": "https://www.uniprot.org/uniprotkb/A0AB32TAA1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33957005", "abstract": "", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Stereotypic generation of axial tenocytes from bipartite sclerotome domains in zebrafish.", "journal": "PLoS Genet.", "date": "2018", "authors": "Ma Roger C, Jacobs Craig T, Sharma Priyanka, Kocha Katrinka M, Huang Peng", "reference": { "type": "PubMed", "id": "30388110", "url": "https://pubmed.ncbi.nlm.nih.gov/30388110" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32T8Y5-1", "protein_name": "Paired box protein Pax-1a isoform X1", "gene_name": "pax1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3U4-1", "protein_name": "Homeobox protein Nkx-3.1", "gene_name": "nkx3-1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32T8Y5", "url": "https://www.uniprot.org/uniprotkb/A0AB32T8Y5" } ], "common_name": 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"journal": "Mech. Dev.", "date": "2020", "authors": "Liu Yu-Hsiu, Lin Tz-Chi, Hwang Sheng-Ping L", "reference": { "type": "PubMed", "id": "32061871", "url": "https://pubmed.ncbi.nlm.nih.gov/32061871" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32T8Y5-1", "protein_name": "Paired box protein Pax-1a isoform X1", "gene_name": "pax1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32T8Y5", "url": "https://www.uniprot.org/uniprotkb/A0AB32T8Y5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32061871", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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[] } ] }, { "title": "Pax9 is essential for granulopoiesis but dispensable for erythropoiesis in zebrafish.", "journal": "Biochem. 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Rep.", "date": "2019", "authors": "Richardson R, Owen N, Toms M, Young Rodrigo M, Tracey-White D, Moosajee M", "reference": { "type": "PubMed", "id": "30733552", "url": "https://pubmed.ncbi.nlm.nih.gov/30733552" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32T9A7-1", "protein_name": "Dachshund a isoform X1", "gene_name": "dacha", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BIH4-1", "protein_name": "Zinc finger protein 644a", "gene_name": "znf644a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6X6-1", "protein_name": "Mothers against decapentaplegic homolog", "gene_name": "smad6a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32T9A7", "url": "https://www.uniprot.org/uniprotkb/A0AB32T9A7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30733552", 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Rep.", "date": "2021", "authors": "Castro Jo\u00e3o, Beviano Vanessa, Pa\u00e7o Ana, Leit\u00e3o-Castro Joana, Cadete Francisco, Francisco Miguel, Freitas Renata", "reference": { "type": "PubMed", "id": "33785799", "url": "https://pubmed.ncbi.nlm.nih.gov/33785799" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32T9A7-1", "protein_name": "Dachshund a isoform X1", "gene_name": "dacha", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32T9A7", "url": "https://www.uniprot.org/uniprotkb/A0AB32T9A7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33785799", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Single Cell Transcriptomic Analysis of Spinal Dmrt3 Neurons in Zebrafish and Mouse Identifies Distinct Subtypes and Reveal Novel Subpopulations Within the dI6 Domain.", "journal": "Front. Cell. Neurosci.", "date": "2021", "authors": "Iglesias Gonz\u00e1lez Ana Bel\u00e9n, Jakobsson Jon E T, Vieillard Jennifer, Lagerstr\u00f6m Malin C, Kullander Klas, Boije Henrik", "reference": { "type": "PubMed", "id": "35002627", "url": "https://pubmed.ncbi.nlm.nih.gov/35002627" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32T9A7-1", "protein_name": "Dachshund a isoform X1", "gene_name": "dacha", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HMR2-1", "protein_name": "Steroid hormone receptor ERR2 isoform X1", "gene_name": "esrrb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32T9A7", "url": "https://www.uniprot.org/uniprotkb/A0AB32T9A7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35002627", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of the zebrafish ventral habenula as a homolog of the mammalian lateral habenula.", "journal": "J. Neurosci.", "date": "2010", "authors": "Amo Ryunosuke, Aizawa Hidenori, Takahoko Mikako, Kobayashi Megumi, Takahashi Rieko, Aoki Tazu, Okamoto Hitoshi", "reference": { "type": "PubMed", "id": "20107084", "url": "https://pubmed.ncbi.nlm.nih.gov/20107084" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32T9D0-1", "protein_name": "PILR alpha-associated neural protein isoform X1", "gene_name": "si:ch211-154o6.4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32T9D0", "url": "https://www.uniprot.org/uniprotkb/A0AB32T9D0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20107084", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rgp1 contributes to craniofacial cartilage development and Rab8a-mediated collagen II secretion.", "journal": "Front. Endocrinol.", "date": "2023", "authors": "Ritter Dylan J, Choudhary Dharmendra, Unlu Gokhan, Knapik Ela W", "reference": { "type": "PubMed", "id": "36843607", "url": "https://pubmed.ncbi.nlm.nih.gov/36843607" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TAF6-1", "protein_name": "Golgi resident protein GCP60", "gene_name": "acbd3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QJF1-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "edem1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1N1-1", "protein_name": "Transcription factor E3b isoform X1", "gene_name": "tfe3b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TAF6", "url": "https://www.uniprot.org/uniprotkb/A0AB32TAF6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36843607", "abstract": "", 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{ "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TDI4", "url": "https://www.uniprot.org/uniprotkb/A0AB32TDI4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30685453", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Positive Darwinian selection and the birth of an olfactory receptor clade in teleosts.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2009", "authors": "Hussain Ashiq, Saraiva Luis R, Korsching Sigrun I", "reference": { "type": "PubMed", "id": "19237578", "url": "https://pubmed.ncbi.nlm.nih.gov/19237578" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TDR3-1", "protein_name": "Trace amine associated receptor 12i isoform X1", "gene_name": "taar12i", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "U3JB35-1", "protein_name": "Trace amine associated receptor 14d", "gene_name": "taar14d", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNM9-1", "protein_name": "Trace amine associated receptor 12c", "gene_name": "taar12c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNN7-1", "protein_name": "Trace amine associated receptor 12j", "gene_name": "taar12j", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP3-1", "protein_name": "Trace amine associated receptor 15", "gene_name": "taar15", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP5-1", "protein_name": "Trace amine-associated receptor 1", "gene_name": "taar10c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNQ0-1", "protein_name": "Trace amine associated receptor 13b", "gene_name": "taar13b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNQ2-1", "protein_name": "Trace amine associated receptor 12a", "gene_name": "taar12a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RFY5-1", "protein_name": "Trace amine associated receptor 14l", "gene_name": "taar14l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RG91-1", "protein_name": "Trace amine associated receptor 14b", "gene_name": "taar14b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RG93-1", "protein_name": "Trace amine associated receptor 14f", "gene_name": "taar14f", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RG94-1", "protein_name": "Trace amine associated receptor 14g", "gene_name": "taar14g", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RG95-1", "protein_name": "Trace amine associated receptor 14e", "gene_name": "taar14e", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AAW0-1", "protein_name": "Trace amine-associated receptor 1", "gene_name": "taar10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QG64-1", "protein_name": "Trace amine associated receptor 14h", "gene_name": "taar14h", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNN3-1", "protein_name": "Trace amine-associated receptor 1", "gene_name": "taar10b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNN8-1", "protein_name": "Trace amine associated receptor 12h", "gene_name": "taar12h", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP6-1", "protein_name": "Trace amine-associated receptor 1", "gene_name": "taar10a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58I1P4-1", "protein_name": "Trace amine associated receptor 14a isoform X1", "gene_name": "taar14a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F2Z4S2-1", "protein_name": "Trace amine associated receptor 14i", "gene_name": "taar14i", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NCA8-1", "protein_name": "Trace amine associated receptor 14j", "gene_name": "taar14j", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NDG6-1", "protein_name": "Trace amine-associated receptor 1", "gene_name": "taar10d", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NV51-1", "protein_name": "Trace amine associated receptor 19p", "gene_name": "taar19p", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TDR3", "url": "https://www.uniprot.org/uniprotkb/A0AB32TDR3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19237578", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 25 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Non-classical amine recognition evolved in a large clade of olfactory receptors.", "journal": "Elife", "date": "2015", "authors": "Li Qian, Tachie-Baffour Yaw, Liu Zhikai, Baldwin Maude W, Kruse Andrew C, Liberles Stephen D", "reference": { "type": "PubMed", "id": "26519734", "url": "https://pubmed.ncbi.nlm.nih.gov/26519734" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TDR3-1", "protein_name": "Trace amine associated receptor 12i isoform X1", "gene_name": "taar12i", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "U3JB35-1", "protein_name": "Trace amine associated receptor 14d", "gene_name": "taar14d", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNN3-1", "protein_name": "Trace amine-associated receptor 1", "gene_name": "taar10b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNN8-1", "protein_name": "Trace amine associated receptor 12h", "gene_name": "taar12h", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP6-1", "protein_name": "Trace amine-associated receptor 1", "gene_name": "taar10a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TDR3", "url": "https://www.uniprot.org/uniprotkb/A0AB32TDR3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26519734", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and establishment of type IV interferon and the characterization of interferon-\u03c5 including its class II cytokine receptors IFN-\u03c5R1 and IL-10R2.", "journal": "Nature communications", "date": "2022-02-22", "authors": "Chen Shan Nan, Gan Zhen, Hou Jing, Yang Yue Cong, Huang Lin, Huang Bei, Wang Su, Nie Pin", "reference": { "type": "PubMed", "id": "35194032", "url": "https://pubmed.ncbi.nlm.nih.gov/35194032" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TH67-1", "protein_name": "Interferon upsilon", "gene_name": "ifnu", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NVW3-1", "protein_name": "Growth/differentiation factor 10b precursor", "gene_name": "ifngr1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NC30-1", 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Genet.", "date": "2015", "authors": "Shih Yu-Huan, Zhang Yuji, Ding Yonghe, Ross Christian A, Li Hu, Olson Timothy M, Xu Xiaolei", "reference": { "type": "PubMed", "id": "25583992", "url": "https://pubmed.ncbi.nlm.nih.gov/25583992" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32THC7-1", "protein_name": "Troponin I type 2a (Skeletal, fast), tandem duplicate 2", "gene_name": "tnni2a.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TIL7-1", "protein_name": "Troponin I4a isoform X1", "gene_name": "tnni4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QIK0-1", "protein_name": "Emerin (Emery-Dreifuss muscular dystrophy) isoform 1", "gene_name": "emd", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0V234-1", "protein_name": "Four and a half LIM domains protein 2b", "gene_name": "fhl2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NBP6-1", "protein_name": "Myosin-7", "gene_name": "myh7l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BID5-1", "protein_name": "Desmoplakin-A", "gene_name": "dspa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PQ61-1", "protein_name": "Desmoplakin-B", "gene_name": "dspb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "R4GDZ5-1", "protein_name": "Myosin, heavy chain 7B, cardiac muscle, beta a", "gene_name": "myh7ba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N4X6-1", "protein_name": "Nebulette", "gene_name": "nebl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9B6-1", "protein_name": "Myopalladin", "gene_name": "mypn", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TCB4-1", "protein_name": "Nesprin-2a isoform X1", "gene_name": "syne2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N1F2-1", "protein_name": "BAG family molecular chaperone regulator 3", "gene_name": "bag3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P2H4-1", "protein_name": "Phospholamban", "gene_name": "pln1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QCC0-1", "protein_name": "Troponin I type 2b (Skeletal, fast), tandem duplicate 1 isoform 1; 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Commun.", "date": "2022", "authors": "Huang Mengmeng, Akerberg Alexander A, Zhang Xiaoran, Yoon Haejin, Joshi Shakchhi, Hallinan Celia, Nguyen Christopher, Pu William T, Haigis Marcia C, Burns C Geoffrey, Burns Caroline E", "reference": { "type": "PubMed", "id": "36198703", "url": "https://pubmed.ncbi.nlm.nih.gov/36198703" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TIL7-1", "protein_name": "Troponin I4a isoform X1", "gene_name": "tnni4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PK58-1", "protein_name": "RNA binding protein fox-1 homolog", "gene_name": "rbfox2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J6A6-1", "protein_name": "Coiled-coil-helix-coiled-coil-helix domain containing 3a isoform X1", "gene_name": "chchd3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PBL0-1", "protein_name": "Mitochondrial import inner membrane translocase subunit tim16", "gene_name": "pam16", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TIL7", "url": "https://www.uniprot.org/uniprotkb/A0AB32TIL7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36198703", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arap3 is dysregulated in a mouse model of hypotrichosis-lymphedema-telangiectasia and regulates lymphatic vascular development.", "journal": "Hum. Mol. Genet.", "date": "2014", "authors": "Kartopawiro J, Bower NI, Karnezis T, Kazenwadel J, Betterman KL, Lesieur E, Koltowska K, Astin J, Crosier P, Vermeren S, Achen MG, Stacker SA, Smith KA, Harvey NL, Francois M, Hogan BM", "reference": { "type": "PubMed", "id": "24163130", "url": "https://pubmed.ncbi.nlm.nih.gov/24163130" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TKX9-1", "protein_name": "LIM and calponin homology domains-containing protein 1a isoform X1", "gene_name": "limch1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A449-1", "protein_name": "Transcriptional and immune response regulator b", "gene_name": "tcimb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TKX9", "url": "https://www.uniprot.org/uniprotkb/A0AB32TKX9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24163130", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Troponin T is essential for sarcomere assembly in zebrafish skeletal muscle.", "journal": "J. Cell Sci.", "date": "2011", "authors": "Ferrante Maria I, Kiff Rebecka M, Goulding David A, Stemple Derek L", "reference": { "type": "PubMed", "id": "21245197", "url": "https://pubmed.ncbi.nlm.nih.gov/21245197" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TLE9-1", "protein_name": "Troponin T2e, cardiac isoform X1", "gene_name": "tnnt2e", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TLE9", "url": "https://www.uniprot.org/uniprotkb/A0AB32TLE9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21245197", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tritiated water exposure disrupts myofibril structure and induces mis-regulation of eye opacity and DNA repair genes in zebrafish early life stages.", "journal": "Aquat. Toxicol.", "date": "2018", "authors": "Arcanjo Caroline, Armant Olivier, Floriani Magali, Cavalie Isabelle, Camilleri Virginie, Simon Olivier, Orjollet Daniel, Adam-Guillermin Christelle, Gagnaire B\u00e9atrice", "reference": { "type": "PubMed", "id": "29751158", "url": "https://pubmed.ncbi.nlm.nih.gov/29751158" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TLE9-1", "protein_name": "Troponin T2e, cardiac isoform X1", "gene_name": "tnnt2e", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S6N1-1", "protein_name": "Crystallin, gamma M2d21", "gene_name": "crygm2d21", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S6P0-1", "protein_name": "Crystallin, gamma M2d9", "gene_name": "crygm2d9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QE31-1", "protein_name": "Calpain-3", "gene_name": "capn3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1MZY8-1", "protein_name": "Crystallin, gamma M2d6", "gene_name": 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reductase subunit M2 B", "gene_name": "rrm2b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TLE9", "url": "https://www.uniprot.org/uniprotkb/A0AB32TLE9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29751158", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of splicing factor IK impairs normal skeletal muscle development.", "journal": "BMC Biol.", "date": "2021", "authors": "Ka Hye In, Seo Hyemin, Choi Youngsook, Kim Joohee, Cho Mina, Choi Seok-Yong, Park Sujeong, Han Sora, An Jinsu, Chung Hak Suk, Yang Young, Kim Min Jung", "reference": { "type": "PubMed", "id": "33789631", "url": "https://pubmed.ncbi.nlm.nih.gov/33789631" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0AB32TLE9-1", "protein_name": "Troponin T2e, cardiac isoform X1", "gene_name": "tnnt2e", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PGA4-1", "protein_name": "[histone H3]-lysine(4) N-trimethyltransferase", "gene_name": "smyd1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7EXS2-1", "protein_name": "Serine/threonine-protein kinase TNNI3K", "gene_name": "tnni3k", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0AB32TLE9", "url": "https://www.uniprot.org/uniprotkb/A0AB32TLE9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33789631", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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Biol.", "date": "2008", "authors": "Sundstr\u00f6m G\u00f6rel, Larsson Tomas A, Larhammar Dan", "reference": { "type": "PubMed", "id": "18803835", "url": "https://pubmed.ncbi.nlm.nih.gov/18803835" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0B4J1B0-1", "protein_name": "Insulin-like growth factor 2 mRNA-binding protein 2a", "gene_name": "igf2bp2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IVY2-1", "protein_name": "Uncharacterized protein LOC557028", "gene_name": "igf2bp2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S522-1", "protein_name": "RNA-binding protein 45", "gene_name": "rbm45", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B3F211-1", "protein_name": "Insulin-like growth factor-binding protein 2-B", "gene_name": "igfbp2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q08CK7-1", "protein_name": "Insulin-like growth factor 2 mRNA-binding protein 1", "gene_name": "igf2bp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LW94-1", "protein_name": "MAGUK p55 subfamily member 6b", "gene_name": "pals2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N1J9-1", "protein_name": "Glucose-6-phosphatase", "gene_name": "g6pc1a.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N4I9-1", "protein_name": "Amine oxidase", "gene_name": "aoc2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BJS4-1", "protein_name": "Oxysterol-binding protein", "gene_name": "osbpl6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0B4J1B0", "url": "https://www.uniprot.org/uniprotkb/A0A0B4J1B0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18803835", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "In vivo analysis of Ifn-gamma1 and Ifn-gamma2 signaling in zebrafish.", "journal": "J. Immunol.", "date": "2010", "authors": "Aggad Dina, Stein Cornelia, Sieger Dirk, Mazel Martine, Boudinot Pierre, Herbomel Philippe, Levraud Jean-Pierre, Lutfalla Georges, Leptin Maria", "reference": { "type": "PubMed", "id": "21048110", "url": "https://pubmed.ncbi.nlm.nih.gov/21048110" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0B4J1B0-1", "protein_name": "Insulin-like growth factor 2 mRNA-binding protein 2a", "gene_name": "igf2bp2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NVW3-1", "protein_name": "Growth/differentiation factor 10b precursor", "gene_name": "ifngr1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NC30-1", "protein_name": "Interferon gamma receptor 2 precursor", "gene_name": "ifngr2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RBF1-1", "protein_name": "Interleukin-20 receptor subunit alpha precursor", "gene_name": "il20ra", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": 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Endocrinol.", "date": "2016", "authors": "O'Hare Elizabeth A, Yerges-Armstrong Laura M, Perry James A, Shuldiner Alan R, Zaghloul Norann A", "reference": { "type": "PubMed", "id": "26963759", "url": "https://pubmed.ncbi.nlm.nih.gov/26963759" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0B4J1B0-1", "protein_name": "Insulin-like growth factor 2 mRNA-binding protein 2a", "gene_name": "igf2bp2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7EZY0-1", "protein_name": "Peptidase inhibitor R3HDML precursor", "gene_name": "r3hdml", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UXZ0-1", "protein_name": "Cyclin-dependent kinase 4 inhibitor C", "gene_name": "cdkn2c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z1B7-1", "protein_name": "Zinc finger protein GLIS3 isoform X1", "gene_name": "glis3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58FZ01-1", "protein_name": "Potassium voltage-gated channel subfamily KQT member 1", "gene_name": "kcnq1.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IL71-1", "protein_name": "Insulin-degrading enzyme", "gene_name": "ide", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JII7-1", "protein_name": "Ankyrin-1", "gene_name": "ank1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8E7A9-1", "protein_name": "Krueppel-like factor 14", "gene_name": "klf16", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NYE4-1", "protein_name": "Alkylglycerol monooxygenase", "gene_name": "agmo", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13ABE5-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9 precursor", "gene_name": "adamts9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0B4J1B0", "url": "https://www.uniprot.org/uniprotkb/A0A0B4J1B0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26963759", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "IGF-2 mRNA binding protein 2 regulates primordial germ cell development in zebrafish.", "journal": "Gen. Comp. Endocrinol.", "date": "2021", "authors": "Li Mingyu, Rong Xiaozhi, Lu Ling, Li Yun, Yao Kai, Ge Wei, Duan Cunming", "reference": { "type": "PubMed", "id": "34352271", "url": "https://pubmed.ncbi.nlm.nih.gov/34352271" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0B4J1B0-1", "protein_name": "Insulin-like growth factor 2 mRNA-binding protein 2a", "gene_name": "igf2bp2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0B4J1B0", "url": "https://www.uniprot.org/uniprotkb/A0A0B4J1B0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34352271", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Validation of a Novel Zebrafish Model of Dengue Virus (DENV-3) Pathology Using the Pentaherbal Medicine Denguenil Vati.", "journal": "Biomolecules", "date": "2020", "authors": "Balkrishna Acharya, Solleti Siva Kumar, Verma Sudeep, Varshney Anurag", "reference": { "type": "PubMed", "id": "32605167", "url": "https://pubmed.ncbi.nlm.nih.gov/32605167" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0G2L2I4-1", "protein_name": "C-C motif chemokine", "gene_name": "ccl36.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, 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[] } ] }, { "title": "Systematic identification and characterization of cardiac long intergenic noncoding RNAs in zebrafish.", "journal": "Sci. Rep.", "date": "2017", "authors": "Wang Lei, Ma Xiao, Xu Xiaolei, Zhang Yuji", "reference": { "type": "PubMed", "id": "28455512", "url": "https://pubmed.ncbi.nlm.nih.gov/28455512" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0G2L2Q2-1", "protein_name": "Complex III subunit 9", "gene_name": "uqcr10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IBX9-1", "protein_name": "Non-histone chromosomal protein HMG-like", "gene_name": "hmgn1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IV80-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial", "gene_name": "ndufc1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0G2L2Q2", "url": "https://www.uniprot.org/uniprotkb/A0A0G2L2Q2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28455512", 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Monika, Ye Zhi-Wei, Zhang Jie, Beeson Gyda C, Rockey Don C, Kim Seok-Hyung", "reference": { "type": "PubMed", "id": "34141984", "url": "https://pubmed.ncbi.nlm.nih.gov/34141984" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0G2L2Q2-1", "protein_name": "Complex III subunit 9", "gene_name": "uqcr10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NTA0-1", "protein_name": "Thioredoxin-like protein 1", "gene_name": "txnl1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q502E4-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial", "gene_name": "ndufs4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0G2L2Q2", "url": "https://www.uniprot.org/uniprotkb/A0A0G2L2Q2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34141984", "abstract": "", 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J. Mol. Sci.", "date": "2023", "authors": "Cai Wanwan, Wang Yuequn, Luo Ying, Gao Luoqing, Zhang Jian, Jiang Zhigang, Fan Xiongwei, Li Fang, Xie Yulian, Wu Xiushan, Li Yongqing, Yuan Wuzhou", "reference": { "type": "PubMed", "id": "38003559", "url": "https://pubmed.ncbi.nlm.nih.gov/38003559" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0G2L2Q2-1", "protein_name": "Complex III subunit 9", "gene_name": "uqcr10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PQW6-1", "protein_name": "Voltage-dependent L-type calcium channel subunit alpha", "gene_name": "cacna1fb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AUK1-1", "protein_name": "Voltage-dependent calcium channel subunit alpha-2/delta-2b isoform X1", "gene_name": "cacna2d2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WER9-1", "protein_name": "Cytochrome c oxidase subunit 8B", "gene_name": "cox8b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cannabinoid Receptor-2 Regulates Embryonic Hematopoietic Stem Cell Development via Prostaglandin E2 and P-Selectin Activity.", "journal": "Stem Cells", "date": "2015", "authors": "Esain Virginie, Kwan Wanda, Carroll Kelli J, Cortes Mauricio, Liu Sarah Y, Frechette Gregory M, Sheward Lea M V, Nissim Sahar, Goessling Wolfram, North Trista E", "reference": { "type": "PubMed", "id": "25931248", "url": "https://pubmed.ncbi.nlm.nih.gov/25931248" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0H2UKU4-1", "protein_name": "Protocadherin-7b", "gene_name": "pcdh7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NL34-1", "protein_name": "E-selectin precursor", "gene_name": "sele", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0H2UKU4", "url": "https://www.uniprot.org/uniprotkb/A0A0H2UKU4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25931248", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq.", "journal": "Curr. Biol.", "date": "2018", "authors": "Pandey Shristi, Shekhar Karthik, Regev Aviv, Schier Alexander F", "reference": { "type": "PubMed", "id": "29576475", "url": "https://pubmed.ncbi.nlm.nih.gov/29576475" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0H2UKU4-1", "protein_name": "Protocadherin-7b", "gene_name": "pcdh7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B909-1", "protein_name": "Protein kinase C", "gene_name": "prkcq", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NQC4-1", "protein_name": "Neurogranin (Protein kinase C substrate, RC3) a", "gene_name": "nrgna", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N4X6-1", "protein_name": "Nebulette", "gene_name": "nebl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9J6-1", "protein_name": "Probable G-protein coupled receptor 139", "gene_name": "gpr139", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q6P4-1", "protein_name": "Tetraspanin", "gene_name": "cd82a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NG73-1", "protein_name": "Fish-egg lectin-like isoform X1; Fish-egg lectin-like precursor", "gene_name": "si:ch211-251f6.3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0H2UKU4", "url": "https://www.uniprot.org/uniprotkb/A0A0H2UKU4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29576475", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of slc39a14 causes simultaneous manganese hypersensitivity and deficiency in zebrafish.", "journal": "Dis. Model. Mech.", "date": "2022", "authors": "Tuschl Karin, White Richard J, Trivedi Chintan, Valdivia Leonardo E, Niklaus Stephanie, Bianco Isaac H, Dadswell Chris, Gonz\u00e1lez-M\u00e9ndez Ram\u00f3n, Sealy Ian M, Neuhauss Stephan C F, Houart Corinne, Rihel Jason, Wilson Stephen W, Busch-Nentwich Elisabeth M", "reference": { "type": "PubMed", "id": "35514229", "url": "https://pubmed.ncbi.nlm.nih.gov/35514229" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0H2UKU4-1", "protein_name": "Protocadherin-7b", "gene_name": "pcdh7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QTE3-1", "protein_name": "Beta-adducin isoform 1", "gene_name": "add2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0H2UKU4", "url": "https://www.uniprot.org/uniprotkb/A0A0H2UKU4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35514229", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptome analysis reveals an Atoh1b-dependent gene set downstream of Dlx3b/4b during early inner ear development in zebrafish.", "journal": "Biol. Open", "date": "2023", "authors": "Ezhkova Diana, Schwarzer Simone, Spie\u00df Sandra, Geffarth Michaela, Machate Anja, Z\u00f6ller Daniela, Stucke Johanna, Alexopoulou Dimitra, Lesche Mathias, Dahl Andreas, Hans Stefan", "reference": { "type": "PubMed", "id": "37272628", "url": "https://pubmed.ncbi.nlm.nih.gov/37272628" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0H2UKU4-1", "protein_name": "Protocadherin-7b", "gene_name": "pcdh7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8QC01-1", "protein_name": "ETS translocation variant 5b isoform 1", "gene_name": "etv5b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q98878-1", "protein_name": "Homeobox protein Dlx4b", "gene_name": "dlx4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LWG1-1", "protein_name": "Iroquois-class homeodomain protein IRX-4b", "gene_name": "irx4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AJI3-1", "protein_name": "Hyaluronan synthase 3 isoform X1", "gene_name": "has3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0H2UKU4", "url": "https://www.uniprot.org/uniprotkb/A0A0H2UKU4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37272628", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "High-throughput genome editing and phenotyping facilitated by high resolution melting curve analysis.", "journal": "PLoS ONE", "date": "2014", "authors": "Thomas Holly R, Percival Stefanie M, Yoder Bradley K, Parant John M", "reference": { "type": "PubMed", "id": "25503746", "url": "https://pubmed.ncbi.nlm.nih.gov/25503746" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0H2UKW6-1", "protein_name": "A-kinase anchor protein 8-like", "gene_name": "akap8l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NE13-1", "protein_name": "Cohesin subunit SA", "gene_name": "stag2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JMZ3-1", "protein_name": "Protein dpy-30 homolog", "gene_name": "dpy30", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NDC2-1", "protein_name": "ATPase family AAA domain-containing protein 5b", "gene_name": "atad5b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BIB1-1", "protein_name": "Sororin", "gene_name": "cdca5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QF60-1", "protein_name": "Chromosome transmission fidelity protein 18 homolog", "gene_name": "chtf18", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QPT3-1", "protein_name": "Double-strand break repair protein", "gene_name": "mre11a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZUW7-1", "protein_name": "Protein Mdm4", "gene_name": "mdm4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0H2UKW6", "url": "https://www.uniprot.org/uniprotkb/A0A0H2UKW6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25503746", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crosstalks between NOD1 and Histone H2A Contribute to Host Defense against Streptococcus agalactiae Infection in Zebrafish.", "journal": "Antibiotics", "date": "2021", "authors": "Wu Xiaoman, Xiong Fan, Fang Hong, Zhang Jie, Chang Mingxian", "reference": { "type": "PubMed", "id": "34356784", "url": 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[] } ] }, { "title": "Lifelong single-cell profiling of cranial neural crest diversification in zebrafish.", "journal": "Nat. Commun.", "date": "2022", "authors": "Fabian Peter, Tseng Kuo-Chang, Thiruppathy Mathi, Arata Claire, Chen Hung-Jhen, Smeeton Joanna, Nelson Nellie, Crump J Gage", "reference": { "type": "PubMed", "id": "35013168", "url": "https://pubmed.ncbi.nlm.nih.gov/35013168" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4I9N1-1", "protein_name": "Thrombospondin-4a precursor", "gene_name": "thbs4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TT03-1", "protein_name": "Transcription factor SOX-6 isoform X1", "gene_name": "sox6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6IQQ7-1", "protein_name": "Lumican", "gene_name": "lum", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4I9N1", "url": "https://www.uniprot.org/uniprotkb/A0A0R4I9N1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35013168", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regeneration of Jaw Joint Cartilage in Adult Zebrafish.", "journal": "Front. Cell Dev. Biol.", "date": "2022", "authors": "Smeeton Joanna, Natarajan Natasha, Anderson Troy, Tseng Kuo-Chang, Fabian Peter, Crump J Gage", "reference": { "type": "PubMed", "id": "35127702", "url": "https://pubmed.ncbi.nlm.nih.gov/35127702" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4I9N1-1", "protein_name": "Thrombospondin-4a precursor", "gene_name": "thbs4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58I2W8-1", "protein_name": "Proteoglycan 4b isoform X1", "gene_name": "prg4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8AW56-1", "protein_name": "Cochlin", "gene_name": "coch", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TVW1-1", "protein_name": "Leptin receptor isoform X1", "gene_name": "lepr", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4I9N1", "url": "https://www.uniprot.org/uniprotkb/A0A0R4I9N1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35127702", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure, evolution and expression of zebrafish cartilage oligomeric matrix protein (COMP, TSP5). CRISPR-Cas mutants show a dominant phenotype in myosepta.", "journal": "Front. Endocrinol.", "date": "2022", "authors": "Forte-Gomez Helena Fabiana, Gioia Roberta, Tonelli Francesca, Kobbe Birgit, Koch Peter, Bloch Wilhelm, Paulsson Mats, Zaucke Frank, Forlino Antonella, Wagener Raimund", "reference": { "type": "PubMed", "id": "36452329", "url": "https://pubmed.ncbi.nlm.nih.gov/36452329" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4I9N1-1", "protein_name": "Thrombospondin-4a precursor", "gene_name": "thbs4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0G2KDJ5-1", "protein_name": "Cartilage oligomeric matrix protein isoform 1 precursor", "gene_name": "comp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RGB8-1", "protein_name": "Kelch-like protein 26", "gene_name": "klhl26", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NEC3-1", "protein_name": "Uncharacterized protein LOC100126026", "gene_name": "im:7138561", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F398-1", "protein_name": "Uncharacterized protein LOC562114", "gene_name": "si:ch211-253b8.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QYY6-1", "protein_name": "CREB-regulated transcription coactivator 1b", "gene_name": "crtc1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4I9N1", "url": "https://www.uniprot.org/uniprotkb/A0A0R4I9N1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36452329", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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Genet. Genomics", "date": "2016", "authors": "Lui Eei Yin, Li Caixia, Li Zhi-Hua, Gong Zhiyuan, Lam Siew Hong", "reference": { "type": "PubMed", "id": "27503704", "url": "https://pubmed.ncbi.nlm.nih.gov/27503704" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4I9S5-1", "protein_name": "N-alpha-acetyltransferase 15, NatA auxiliary subunit b", "gene_name": "naa15b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NCY5-1", "protein_name": "mRNA decay activator protein ZFP36", "gene_name": "wu:fi61b04", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4I9S5", "url": "https://www.uniprot.org/uniprotkb/A0A0R4I9S5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27503704", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Naa15 knockdown enhances c2c12 myoblast fusion and induces defects in zebrafish myotome morphogenesis.", "journal": "Comp. 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Biol.", "date": "2019", "authors": "Monestier O, Landemaine A, Bugeon J, Rescan PY, Gabillard JC", "reference": { "type": "PubMed", "id": "30502388", "url": "https://pubmed.ncbi.nlm.nih.gov/30502388" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4I9S5-1", "protein_name": "N-alpha-acetyltransferase 15, NatA auxiliary subunit b", "gene_name": "naa15b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QE25-1", "protein_name": "N-alpha-acetyltransferase 15, NatA auxiliary subunit a", "gene_name": "naa15a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4I9S5", "url": "https://www.uniprot.org/uniprotkb/A0A0R4I9S5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30502388", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rab33a and Rab33ba mediate the outgrowth of forebrain commissural axons in the zebrafish brain.", "journal": "Sci. 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Demonstration of the Coexistence of Duplicated LH Receptors in Teleosts, and Their Origin in Ancestral Actinopterygians.", "journal": "PLoS ONE", "date": "2015", "authors": "Maugars Gersende, Dufour Sylvie", "reference": { "type": "PubMed", "id": "26271038", "url": "https://pubmed.ncbi.nlm.nih.gov/26271038" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IAF6-1", "protein_name": "Proteasome activator complex subunit 4A", "gene_name": "psme4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AA52Z1E4-1", "protein_name": "Proteasome activator complex subunit 4B isoform X1", "gene_name": "psme4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N4V2-1", "protein_name": "Forkhead box protein N2b", "gene_name": "foxn2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of hidden associations among eukaryotic genes through statistical analysis of coevolutionary transitions.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2023-04-18", "authors": "Dembech Elena, Malatesta Marco, De Rito Carlo, Mori Giulia, Cavazzini Davide, Secchi Andrea, Morandin Francesco, Percudani Riccardo", "reference": { "type": "PubMed", "id": "37043529", "url": "https://pubmed.ncbi.nlm.nih.gov/37043529" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IAX5-1", "protein_name": "Ureidoglycolate lyase", "gene_name": "ugl", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4IAX5", "url": "https://www.uniprot.org/uniprotkb/A0A0R4IAX5" } ], "common_name": "Zebrafish", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNA structure replaces the need for U2AF2 in splicing.", "journal": "Genome Res.", "date": "2016", "authors": "Lin Chien-Ling, Taggart Allison J, 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Charles E, Bazzini Ariel Alejandro, Krishnaswamy Smita, Rihel Jason, Giraldez Antonio J", "reference": { "type": "PubMed", "id": "37191016", "url": "https://pubmed.ncbi.nlm.nih.gov/37191016" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4IBX9-1", "protein_name": "Non-histone chromosomal protein HMG-like", "gene_name": "hmgn1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IWN8-1", "protein_name": "Non-histone chromosomal protein HMG-14A-like", "gene_name": "hmgn1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4IBX9", "url": "https://www.uniprot.org/uniprotkb/A0A0R4IBX9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37191016", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mitochondrial DNA metabolism in early development of zebrafish (Danio rerio).", "journal": "Biochim. Biophys. Acta", "date": "2012", "authors": "Artuso Lucia, Romano Alessandro, Verri Tiziano, Domenichini Alice, Argenton Francesco, Santorelli Filippo Maria, Petruzzella Vittoria", "reference": { "type": "PubMed", "id": "22465854", "url": "https://pubmed.ncbi.nlm.nih.gov/22465854" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICC1-1", "protein_name": "Twinkle mtDNA helicase", "gene_name": "twnk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IVC8-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "cox5ab", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q502E4-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial", "gene_name": "ndufs4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N0Z5-1", "protein_name": "Thymidine kinase 2, mitochondrial", "gene_name": "tk2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Opa1 is required for proper mitochondrial metabolism in early development.", "journal": "PLoS ONE", "date": "2013", "authors": "Rahn Jennifer J, Stackley Krista D, Chan Sherine S L", "reference": { "type": "PubMed", "id": "23516612", "url": "https://pubmed.ncbi.nlm.nih.gov/23516612" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICC1-1", "protein_name": "Twinkle mtDNA helicase", "gene_name": "twnk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5U3A7-1", "protein_name": "Dynamin-like GTPase OPA1, mitochondrial", "gene_name": "opa1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BJP0-1", "protein_name": "Mitofusin-2", "gene_name": "mfn2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICC1", "url": "https://www.uniprot.org/uniprotkb/A0A0R4ICC1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23516612", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The cellular and molecular progression of mitochondrial dysfunction induced by 2,4-dinitrophenol in developing zebrafish embryos.", "journal": "Differentiation", "date": "2015", "authors": "Bestman Jennifer E, Stackley Krista D, Rahn Jennifer J, Williamson Tucker J, Chan Sherine S L", "reference": { "type": "PubMed", "id": "25771346", "url": "https://pubmed.ncbi.nlm.nih.gov/25771346" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICC1-1", "protein_name": "Twinkle mtDNA helicase", "gene_name": "twnk", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICC1", "url": "https://www.uniprot.org/uniprotkb/A0A0R4ICC1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25771346", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biological response of zebrafish embryos after short-term exposure to thifluzamide.", "journal": "Sci. Rep.", "date": "2016", "authors": "Yang Yang, Liu Wenxian, Mu Xiyan, Qi Suzhen, Fu Bin, Wang Chengju", "reference": { "type": "PubMed", "id": "27924917", "url": "https://pubmed.ncbi.nlm.nih.gov/27924917" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICC1-1", "protein_name": "Twinkle mtDNA helicase", "gene_name": "twnk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IVC8-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "cox5ab", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q502E4-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial", "gene_name": "ndufs4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N0Z5-1", "protein_name": "Thymidine kinase 2, mitochondrial", "gene_name": "tk2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICC1", "url": "https://www.uniprot.org/uniprotkb/A0A0R4ICC1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27924917", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Altered glycometabolism in zebrafish exposed to thifluzamide.", "journal": "Chemosphere", "date": "2017", "authors": "Yang Yang, Liu Wenxian, Li Dongzhi, Qian Le, Fu Bin, Wang Chengju", "reference": { "type": "PubMed", "id": "28535465", "url": "https://pubmed.ncbi.nlm.nih.gov/28535465" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICC1-1", "protein_name": "Twinkle mtDNA helicase", "gene_name": "twnk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N0Z5-1", "protein_name": "Thymidine kinase 2, mitochondrial", "gene_name": "tk2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICC1", "url": "https://www.uniprot.org/uniprotkb/A0A0R4ICC1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28535465", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": 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Pollut.", "date": "2020", "authors": "Yang Yang, Dong Fengshou, Liu Xingang, Xu Jun, Wu Xiaohu, Zheng Yongquan", "reference": { "type": "PubMed", "id": "32806454", "url": "https://pubmed.ncbi.nlm.nih.gov/32806454" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICC1-1", "protein_name": "Twinkle mtDNA helicase", "gene_name": "twnk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R7X5-1", "protein_name": "Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial", "gene_name": "suclg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IVC8-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "cox5ab", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q502E4-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial", "gene_name": "ndufs4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QJL0-1", "protein_name": "chitinase", "gene_name": "chia.6", 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activity for multiciliated cell development in the zebrafish embryo.", "journal": "Dev. Biol.", "date": "2018", "authors": "Chong Yan Ling, Zhang Yiliu, Zhou Feng, Roy Sudipto", "reference": { "type": "PubMed", "id": "30218642", "url": "https://pubmed.ncbi.nlm.nih.gov/30218642" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICD5-1", "protein_name": "Transcription factor E2F4", "gene_name": "e2f4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GIT6-1", "protein_name": "Multicilin", "gene_name": "mcidas", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICD5", "url": "https://www.uniprot.org/uniprotkb/A0A0R4ICD5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30218642", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "E2F4/5-mediated transcriptional control of multiciliated cell differentiation: redundancy or fine-tuning?", "journal": "Dev. Biol.", "date": "2019", "authors": "Stracker Travis H", "reference": { "type": "PubMed", "id": "30537487", "url": "https://pubmed.ncbi.nlm.nih.gov/30537487" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICD5-1", "protein_name": "Transcription factor E2F4", "gene_name": "e2f4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICD5", "url": "https://www.uniprot.org/uniprotkb/A0A0R4ICD5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30537487", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "E2f4 is required for intestinal and otolith development in zebrafish.", "journal": "J. 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Natl. Acad. Sci. U.S.A.", "date": "2001", "authors": "Pando M P, Pinchak A B, Cermakian N, Sassone-Corsi P", "reference": { "type": "PubMed", "id": "11517315", "url": "https://pubmed.ncbi.nlm.nih.gov/11517315" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICG0-1", "protein_name": "Period circadian protein homolog 1a isoform X1", "gene_name": "per1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RIV1-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "clocka", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICG0", "url": "https://www.uniprot.org/uniprotkb/A0A0R4ICG0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11517315", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Unraveling the mechanisms of the vertebrate circadian clock: zebrafish may light the way.", "journal": "Bioessays", "date": "2002", "authors": "Pando Matthew P, Sassone-Corsi Paolo", "reference": { "type": "PubMed", "id": "12001265", "url": "https://pubmed.ncbi.nlm.nih.gov/12001265" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICG0-1", "protein_name": "Period circadian protein homolog 1a isoform X1", "gene_name": "per1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N1TWC6-1", "protein_name": "Cryptochrome-1", "gene_name": "cry1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FGL0-1", "protein_name": "Protein timeless homolog", "gene_name": "timeless", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P943-1", "protein_name": "Cryptochrome circadian regulator 3a isoform 2; 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Biol.", "date": "2003", "authors": "Dekens Marcus P S, Santoriello Cristina, Vallone Daniela, Grassi Gabriele, Whitmore David, Foulkes Nicholas S", "reference": { "type": "PubMed", "id": "14653994", "url": "https://pubmed.ncbi.nlm.nih.gov/14653994" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICG0-1", "protein_name": "Period circadian protein homolog 1a isoform X1", "gene_name": "per1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RIV1-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "clocka", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IH97-1", "protein_name": "Aryl hydrocarbon receptor nuclear translocator-like protein 2", "gene_name": "bmal2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PBM5-1", "protein_name": "Period circadian protein homolog 3", "gene_name": "per3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICG0", "url": "https://www.uniprot.org/uniprotkb/A0A0R4ICG0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.14653994", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Light signaling to the zebrafish circadian clock by Cryptochrome 1a.", "journal": "Proc. 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U.S.A.", "date": "2007", "authors": "Tamai T Katherine, Young Lucy C, Whitmore David", "reference": { "type": "PubMed", "id": "17785416", "url": "https://pubmed.ncbi.nlm.nih.gov/17785416" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICG0-1", "protein_name": "Period circadian protein homolog 1a isoform X1", "gene_name": "per1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IH97-1", "protein_name": "Aryl hydrocarbon receptor nuclear translocator-like protein 2", "gene_name": "bmal2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICG0", "url": "https://www.uniprot.org/uniprotkb/A0A0R4ICG0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17785416", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of melanocortin system in the locomotor activity rhythms and melatonin secretion as revealed by agouti-signalling protein (asip1) overexpression in zebrafish.", "journal": "J. Pineal Res.", "date": "2024", "authors": "Godino-Gimeno Alejandra, Leal Esther, Chivite Mauro, Tormos Elisabeth, Rotllant Josep, Vallone Daniela, Foulkes Nicholas S, M\u00edguez Jes\u00fas M, Cerd\u00e1-Reverter Jose Miguel", "reference": { "type": "PubMed", "id": "38241679", "url": "https://pubmed.ncbi.nlm.nih.gov/38241679" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICG0-1", "protein_name": "Period circadian protein homolog 1a isoform X1", "gene_name": "per1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RIV1-1", "protein_name": "Circadian locomoter output cycles protein kaput", "gene_name": "clocka", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NCD8-1", "protein_name": "Proopiomelanocortin b isoform X1; Proopiomelanocortin b precursor", "gene_name": "pomcb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICG0", "url": 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"Retina-specific expression of 5A11/Basigin-2, a member of the immunoglobulin gene superfamily.", "journal": "Invest. Ophthalmol. Vis. Sci.", "date": "2003", "authors": "Ochrietor Judith D, Moroz Tatiana P, van Ekeris Leslie, Clamp Michael F, Jefferson Stephanie C, deCarvalho Ana C, Fadool James M, Wistow Graeme, Muramatsu Takashi, Linser Paul J", "reference": { "type": "PubMed", "id": "12939332", "url": "https://pubmed.ncbi.nlm.nih.gov/12939332" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICR8-1", "protein_name": "Basigin", "gene_name": "bsg", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26453-1", "protein_name": "Basigin", "gene_name": "Bsg", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P18572-1", "protein_name": "Basigin", "gene_name": "Bsg", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P17790-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Chicken" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICR8", "url": "https://www.uniprot.org/uniprotkb/A0A0R4ICR8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12939332", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The inflammatory bowel disease (IBD) susceptibility genes NOD1 and NOD2 have conserved anti-bacterial roles in zebrafish.", "journal": "Dis. Model. Mech.", "date": "2011", "authors": "Oehlers Stefan H, Flores Maria Vega, Hall Chris J, Swift Simon, Crosier Kathryn E, Crosier Philip S", "reference": { "type": "PubMed", "id": "21729873", "url": "https://pubmed.ncbi.nlm.nih.gov/21729873" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A0R4ICR8-1", "protein_name": "Basigin", "gene_name": "bsg", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B233-1", "protein_name": "Erbin isoform X1", "gene_name": "erbin", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A0R4ICR8", "url": "https://www.uniprot.org/uniprotkb/A0A0R4ICR8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21729873", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]