[ { "title": "The DNA sequence analysis of the HAP4-LAP4 region on chromosome XI of Saccharomyces cerevisiae suggests the presence of a second aspartate aminotransferase gene in yeast.", "journal": "Yeast", "date": "1993", "authors": "Ch\u00e9ret G, Pallier C, Valens M, Diagnan-Fornier B, Fukuhara H, Bolotin-Fukuhara M, Sor F", "reference": { "type": "PubMed", "id": "8109175", "url": "https://pubmed.ncbi.nlm.nih.gov/8109175" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P34252-1", "protein_name": "DNA replication regulator SLD2", "gene_name": "SLD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0C5P2-1", "protein_name": "Uncharacterized protein YKL100W-A", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34249-1", "protein_name": "Uncharacterized protein YKL102C", "gene_name": "YKL454", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34251-1", "protein_name": "Uncharacterized oxidoreductase YKL107W", 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[] } ] }, { "title": "Sld2, which interacts with Dpb11 in Saccharomyces cerevisiae, is required for chromosomal DNA replication.", "journal": "Molecular and cellular biology", "date": "1998-10", "authors": "Kamimura Y, Masumoto H, Sugino A, Araki H", "reference": { "type": "PubMed", "id": "9742127", "url": "https://pubmed.ncbi.nlm.nih.gov/9742127" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P34252-1", "protein_name": "DNA replication regulator SLD2", "gene_name": "SLD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47027-1", "protein_name": "DNA replication regulator DPB11", "gene_name": "DPB11", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P34252", "url": "https://www.uniprot.org/uniprotkb/P34252" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], 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Cell Biol.", "date": "2002", "authors": "Bonangelino CJ, Nau JJ, Duex JE, Brinkman M, Wurmser AE, Gary JD, Emr SD, Weisman LS", "reference": { "type": "PubMed", "id": "11889142", "url": "https://pubmed.ncbi.nlm.nih.gov/11889142" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P34756-1", "protein_name": "1-phosphatidylinositol 3-phosphate 5-kinase FAB1", "gene_name": "FAB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06708-1", "protein_name": "Vacuole morphology and inheritance protein 14", "gene_name": "VAC14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q80WQ2-1", "protein_name": "Protein VAC14 homolog", "gene_name": "Vac14", "tax_name": "Mouse" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P34756", "url": "https://www.uniprot.org/uniprotkb/P34756" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11889142", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of Fab1 phosphatidylinositol 3-phosphate 5-kinase pathway by Vac7 protein and Fig4, a polyphosphoinositide phosphatase family member.", "journal": "Mol. 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"reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 106, "end_pos": 106, "sequence_org": "C", "sequence_mut": "S", "comment": "No effect on formation of disulfide bond with TSA1 and reduction of cysteine-sulfinic acid.", "evidence": [ { "database": "UniProtKB", "id": "P36077", "url": "https://www.uniprot.org/uniprotkb/P36077" }, { "database": "PubMed", "id": "14586471", "url": "https://pubmed.ncbi.nlm.nih.gov/14586471" } ], "uniprot_canonical_ac": "P36077-1" }, { "start_pos": 48, "end_pos": 48, "sequence_org": "C", "sequence_mut": "S", "comment": "Minor effect on formation of disulfide bond with TSA1 and reduction of cysteine-sulfinic acid.", "evidence": [ { "database": "UniProtKB", "id": "P36077", "url": "https://www.uniprot.org/uniprotkb/P36077" }, { "database": "PubMed", "id": "14586471", "url": "https://pubmed.ncbi.nlm.nih.gov/14586471" } ], "uniprot_canonical_ac": "P36077-1" }, { "start_pos": 84, "end_pos": 84, "sequence_org": "C", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two enzymes in one; two yeast peroxiredoxins display oxidative stress-dependent switching from a peroxidase to a molecular chaperone function.", "journal": "Cell", "date": "2004-05-28", "authors": "Jang Ho Hee, Lee Kyun Oh, Chi Yong Hun, Jung Bae Gyo, Park Soo Kwon, Park Jin Ho, Lee Jung Ro, Lee Seung Sik, Moon Jeong Chan, Yun Jeong Won, Choi Yeon Ok, Kim Woe Yeon, Kang Ji Seoun, Cheong Gang-Won, Yun Dae-Jin, Rhee Sue Goo, Cho Moo Je, Lee Sang Yeol", "reference": { "type": "PubMed", "id": "15163410", "url": "https://pubmed.ncbi.nlm.nih.gov/15163410" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P34760-1", "protein_name": "Peroxiredoxin TSA1", "gene_name": "TSA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04120-1", "protein_name": "Peroxiredoxin TSA2", "gene_name": "TSA2", "tax_name": "Baker's 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cytosolic thioredoxin peroxidase I and II are important defenses of yeast against organic hydroperoxide insult: catalases and peroxiredoxins cooperate in the decomposition of H2O2 by yeast.", "journal": "The Journal of biological chemistry", "date": "2004-08-20", "authors": "Munhoz Daniela Cristina, Netto Luis Eduardo Soares", "reference": { "type": "PubMed", "id": "15210711", "url": "https://pubmed.ncbi.nlm.nih.gov/15210711" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P34760-1", "protein_name": "Peroxiredoxin TSA1", "gene_name": "TSA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04120-1", "protein_name": "Peroxiredoxin TSA2", "gene_name": "TSA2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P34760", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Peroxiredoxin-mediated redox regulation of the nuclear localization of Yap1, a transcription factor in budding yeast.", "journal": "Antioxidants & redox signaling", "date": "2005", "authors": "Okazaki Shoko, Naganuma Akira, Kuge Shusuke", "reference": { "type": "PubMed", "id": "15706081", "url": "https://pubmed.ncbi.nlm.nih.gov/15706081" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P34760-1", "protein_name": "Peroxiredoxin TSA1", "gene_name": "TSA1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P34760", "url": "https://www.uniprot.org/uniprotkb/P34760" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15706081", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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J.", "date": "2008", "authors": "Trotter Eleanor W, Rand Jonathan D, Vickerstaff Jill, Grant Chris M", "reference": { "type": "PubMed", "id": "18271751", "url": "https://pubmed.ncbi.nlm.nih.gov/18271751" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P34760-1", "protein_name": "Peroxiredoxin TSA1", "gene_name": "TSA1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P34760", "url": "https://www.uniprot.org/uniprotkb/P34760" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.18271751", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A major peroxiredoxin-induced activation of Yap1 transcription factor is mediated by reduction-sensitive disulfide bonds and reveals a low level of transcriptional activation.", "journal": "The Journal of biological chemistry", "date": "2009-02-13", "authors": "Tachibana Tsuyoshi, Okazaki Shoko, Murayama Asako, Naganuma Akira, Nomoto Akio, Kuge Shusuke", "reference": { "type": "PubMed", "id": "19106090", "url": "https://pubmed.ncbi.nlm.nih.gov/19106090" }, "referenced_glycans": [], "referenced_proteins": [ 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Mol. Biol.", "date": "2012", "authors": "Tairum Carlos A, de Oliveira Marcos A, Horta Bruno B, Zara Fernando J, Netto Luis E S", "reference": { "type": "PubMed", "id": "22985967", "url": "https://pubmed.ncbi.nlm.nih.gov/22985967" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P34760-1", "protein_name": "Peroxiredoxin TSA1", "gene_name": "TSA1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P34760", "url": "https://www.uniprot.org/uniprotkb/P34760" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.22985967", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ubiquitination of the peroxisomal import receptor Pex5p.", "journal": "The Biochemical journal", "date": "2004-11-15", "authors": "Platta Harald W, Girzalsky Wolfgang, Erdmann Ralf", "reference": { "type": "PubMed", "id": "15283676", "url": "https://pubmed.ncbi.nlm.nih.gov/15283676" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35056-1", "protein_name": "Peroxisomal targeting signal receptor", "gene_name": "PEX5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05568-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35056", "url": "https://www.uniprot.org/uniprotkb/P35056" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15283676", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ubiquitination of the peroxisomal targeting signal type 1 receptor, Pex5p, suggests the presence of a quality control mechanism during peroxisomal matrix protein import.", "journal": "The Journal of biological chemistry", "date": "2005-01-21", "authors": "Kiel Jan A K W, Emmrich Kerstin, Meyer Helmut E, Kunau Wolf-H", "reference": { "type": "PubMed", "id": "15536088", "url": "https://pubmed.ncbi.nlm.nih.gov/15536088" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35056-1", "protein_name": "Peroxisomal targeting signal receptor", "gene_name": "PEX5", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35056", "url": "https://www.uniprot.org/uniprotkb/P35056" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15536088", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Saccharomyces cerevisiae peroxisomal import receptor Pex5p is monoubiquitinated in wild type cells.", "journal": "The Journal of biological chemistry", "date": "2005-03-04", "authors": "Kragt Astrid, Voorn-Brouwer Tineke, van den Berg Marlene, Distel Ben", "reference": { "type": "PubMed", "id": "15632140", "url": "https://pubmed.ncbi.nlm.nih.gov/15632140" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35056-1", "protein_name": "Peroxisomal targeting signal receptor", "gene_name": "PEX5", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35056", "url": "https://www.uniprot.org/uniprotkb/P35056" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15632140", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The peroxisomal importomer constitutes a large and highly dynamic pore.", "journal": "Nat. Cell Biol.", "date": "2010", "authors": "Meinecke Michael, Cizmowski Christian, Schliebs Wolfgang, Kr\u00fcger Vivien, Beck Sabrina, Wagner Richard, Erdmann Ralf", "reference": { "type": "PubMed", "id": "20154681", "url": "https://pubmed.ncbi.nlm.nih.gov/20154681" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35056-1", "protein_name": "Peroxisomal targeting signal receptor", "gene_name": "PEX5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P80667-1", "protein_name": "Peroxisomal membrane protein PEX13", "gene_name": "PEX13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53112-1", "protein_name": "Peroxisomal membrane protein PEX14", "gene_name": "PEX14", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35056", "url": "https://www.uniprot.org/uniprotkb/P35056" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.20154681", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A peroxisomal ubiquitin ligase complex forms a retrotranslocation channel.", "journal": "Nature", "date": "2022-07", "authors": "Feng Peiqiang, Wu Xudong, Erramilli Satchal K, Paulo Joao A, Knejski Pawel, Gygi Steven P, Kossiakoff Anthony A, Rapoport Tom A", "reference": { "type": "PubMed", "id": "35768507", "url": "https://pubmed.ncbi.nlm.nih.gov/35768507" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35056-1", "protein_name": "Peroxisomal targeting signal receptor", "gene_name": "PEX5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04370-1", "protein_name": "Peroxisome assembly protein 12", "gene_name": "PEX12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32800-1", "protein_name": "Peroxisomal biogenesis factor 2", "gene_name": "PEX2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05568-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35056", "url": 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No effect on its function. Abolished monoubiquitination by PEX2 and polyubiquitination by PEX10, leading to impaired protein import in peroxisomes; when associated with A-6 and R-24.", "evidence": [ { "database": "UniProtKB", "id": "P35056", "url": "https://www.uniprot.org/uniprotkb/P35056" }, { "database": "PubMed", "id": "17452527", "url": "https://pubmed.ncbi.nlm.nih.gov/17452527" }, { "database": "PubMed", "id": "35768507", "url": "https://pubmed.ncbi.nlm.nih.gov/35768507" }, { "database": "PubMed", "id": "17550898", "url": "https://pubmed.ncbi.nlm.nih.gov/17550898" } ], "uniprot_canonical_ac": "P35056-1" }, { "start_pos": 24, "end_pos": 24, "sequence_org": "K", "sequence_mut": "R", "comment": "Loss of UBE2D2-dependent ubiquitination. No effect on its function. Abolished monoubiquitination by PEX2 and polyubiquitination by PEX10, leading to impaired protein import in peroxisomes; when associated with A-6 and R-18.", "evidence": [ { "database": "UniProtKB", "id": "P35056", "url": "https://www.uniprot.org/uniprotkb/P35056" }, { "database": "PubMed", "id": "17452527", "url": "https://pubmed.ncbi.nlm.nih.gov/17452527" }, { "database": "PubMed", "id": "35768507", "url": "https://pubmed.ncbi.nlm.nih.gov/35768507" }, { "database": "PubMed", "id": "17550898", "url": "https://pubmed.ncbi.nlm.nih.gov/17550898" } ], "uniprot_canonical_ac": "P35056-1" }, { "start_pos": 6, "end_pos": 6, "sequence_org": "C", "sequence_mut": "R", "comment": "Abolished monoubiquitination by PEX2, promoting polyubiquitination by PEX10 and degradation. Loss of UBE2D2-independent ubiquitination. Abolished monoubiquitination by PEX2 and polyubiquitination by PEX10, leading to impaired protein import in peroxisomes; when associated with R-18 and R-24.", "evidence": [ { "database": "UniProtKB", "id": "P35056", "url": "https://www.uniprot.org/uniprotkb/P35056" }, { "database": "PubMed", "id": "35768507", "url": "https://pubmed.ncbi.nlm.nih.gov/35768507" }, { "database": "PubMed", "id": "17550898", "url": "https://pubmed.ncbi.nlm.nih.gov/17550898" } ], "uniprot_canonical_ac": "P35056-1" }, { "start_pos": 354, "end_pos": 354, "sequence_org": "C", "sequence_mut": "S", "comment": "Abolished zinc-binding and folding, leading to impaired protein import into peroxisomes.", "evidence": [ { "database": "UniProtKB", "id": "Q04370", "url": "https://www.uniprot.org/uniprotkb/Q04370" }, { "database": "PubMed", "id": "35768507", "url": "https://pubmed.ncbi.nlm.nih.gov/35768507" } ], "uniprot_canonical_ac": "Q04370-1" }, { "start_pos": 223, "end_pos": 224, "sequence_org": "PR", "sequence_mut": 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"https://www.uniprot.org/uniprotkb/P32800" }, { "database": "PubMed", "id": "35768507", "url": "https://pubmed.ncbi.nlm.nih.gov/35768507" } ], "uniprot_canonical_ac": "P32800-1" }, { "start_pos": 270, "end_pos": 270, "sequence_org": "L", "sequence_mut": "A", "comment": "Abolished interaction with PEX12, leading to prevent E3 ubiquitin-protein ligase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q05568", "url": "https://www.uniprot.org/uniprotkb/Q05568" }, { "database": "PubMed", "id": "35768507", "url": "https://pubmed.ncbi.nlm.nih.gov/35768507" } ], "uniprot_canonical_ac": "Q05568-1" }, { "start_pos": 288, "end_pos": 288, "sequence_org": "L", "sequence_mut": "A", "comment": "Abolished E3 ubiquitin-protein ligase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q05568", "url": "https://www.uniprot.org/uniprotkb/Q05568" }, { "database": "PubMed", "id": "35768507", "url": "https://pubmed.ncbi.nlm.nih.gov/35768507" }, { "database": "PubMed", "id": "18644345", 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Leads to a shifted profile with the predominant form of the SPT module now abundant in SALSA/SLIK, and a significantly reduced amount of SAGA.", "evidence": [ { "database": "UniProtKB", "id": "P35177", "url": "https://www.uniprot.org/uniprotkb/P35177" }, { "database": "PubMed", "id": "12186975", "url": "https://pubmed.ncbi.nlm.nih.gov/12186975" } ], "uniprot_canonical_ac": "P35177-1" }, { "start_pos": 843, "end_pos": 1332, "sequence_org": "LDDTRFLQEYDISNAIPDIVYEGVNTKTLDKMEDASVDRMLQNGINKQSRFLANKDLGLTPKMNQNITLIQQIRHICHKISLIRMLQSPLSAQNSRSNPNAFLNNHIYNYTIIDDSLDIDPVSQLPTHDYKNNRELIWKFMHKNISKVAMANGFETAHPSAINMLTEIAGDYLSNLIKTLKLHHETNSLNRGTNVEMLQTTLLENGINRPDDLFSYVESEFGKKTKKLQDIKQKLESFLRALLRPTLQELSERNFEDESQSFFTGDFASELTGEDFFGFRELGLEKEFGVLSSSVPLQLLTTQFQTVDGETKVQAKKIQPEESDSIVYKKITKGMLDAGSFWNTLLPLLQKDYERSKAYIAKQSKSSANDKTSMTSTEDNSFALLEEDQFVSKKTATKARLPPTGKISTTYKKKPIASAFILPEEDLENDVKADPTTTVNAKVGAENDGDSSLFLRTPQPLDPLDMDDAFDDTNMGSNSSFSLSLPRLNQ", "sequence_mut": "", "comment": "In spt7-223; removes the C-terminal histone fold, leading to the same phenotype as a deletion mutation.", "evidence": [ { "database": "UniProtKB", "id": "P35177", "url": "https://www.uniprot.org/uniprotkb/P35177" }, { "database": "PubMed", "id": "12186975", "url": "https://pubmed.ncbi.nlm.nih.gov/12186975" } ], "uniprot_canonical_ac": "P35177-1" } ], "record_id": "pubmed.12186975", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The bromodomain: a conserved sequence found in human, Drosophila and yeast proteins.", "journal": "Nucleic Acids Res.", "date": "1992", "authors": "Haynes S R, Dollard C, Winston F, Beck S, Trowsdale J, Dawid I B", "reference": { "type": "PubMed", "id": "1350857", "url": "https://pubmed.ncbi.nlm.nih.gov/1350857" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35177-1", "protein_name": "SAGA complex subunit SPT7", "gene_name": "SPT7", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35177", "url": "https://www.uniprot.org/uniprotkb/P35177" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1350857", "abstract": "", "glycosylation": [], "mutagenesis": [], 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"type": "PubMed", "id": "20498363", "url": "https://pubmed.ncbi.nlm.nih.gov/20498363" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35177-1", "protein_name": "SAGA complex subunit SPT7", "gene_name": "SPT7", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35177", "url": "https://www.uniprot.org/uniprotkb/P35177" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.20498363", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Passive diffusion through nuclear pore complexes regulates levels of the yeast SAGA and SLIK coactivator complexes.", "journal": "Journal of cell science", "date": "2020-03-26", "authors": "Makio Tadashi, Wozniak Richard W", "reference": { "type": "PubMed", "id": "32051285", "url": "https://pubmed.ncbi.nlm.nih.gov/32051285" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35177-1", "protein_name": "SAGA complex subunit SPT7", "gene_name": "SPT7", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": 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"The Saccharomyces cerevisiae SPT7 gene encodes a very acidic protein important for transcription in vivo.", "journal": "Genetics", "date": "1995", "authors": "Gansheroff L J, Dollard C, Tan P, Winston F", "reference": { "type": "PubMed", "id": "7713415", "url": "https://pubmed.ncbi.nlm.nih.gov/7713415" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35177-1", "protein_name": "SAGA complex subunit SPT7", "gene_name": "SPT7", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35177", "url": "https://www.uniprot.org/uniprotkb/P35177" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7713415", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sequence analysis of a 31 kb DNA fragment from the right arm of Saccharomyces cerevisiae chromosome II.", "journal": "Yeast", "date": "1994", "authors": "Van der Aart Q J, Barthe C, Doignon F, Aigle M, Crouzet M, Steensma H Y", "reference": { "type": "PubMed", "id": "7985423", "url": "https://pubmed.ncbi.nlm.nih.gov/7985423" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35177-1", "protein_name": "SAGA complex subunit SPT7", "gene_name": "SPT7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38085-1", "protein_name": "Valine/tyrosine/tryptophan amino-acid permease 1", "gene_name": "TAT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38086-1", "protein_name": "DNA repair and recombination protein RDH54", "gene_name": "RDH54", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38243-1", "protein_name": "Uncharacterized protein YBR071W", "gene_name": "YBR0712", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38246-1", "protein_name": "Protein ECM8", "gene_name": "ECM8", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38244-1", "protein_name": "Vacuolar membrane protease", "gene_name": "PFF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38247-1", "protein_name": "Protein SLM4", "gene_name": "SLM4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38248-1", "protein_name": "Cell wall protein ECM33", "gene_name": "ECM33", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P15731-1", "protein_name": "Ubiquitin-conjugating enzyme E2 4", "gene_name": "UBC4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P15992-1", "protein_name": "Heat shock protein 26", "gene_name": "HSP26", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P18759-1", "protein_name": "Vesicular-fusion protein SEC18", "gene_name": "SEC18", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38249-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit A", "gene_name": "RPG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38242-1", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14", "gene_name": "ALG14", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35177", "url": "https://www.uniprot.org/uniprotkb/P35177" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7985423", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { 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"sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/Ada) complex.", "journal": "Genes Dev.", "date": "1997", "authors": "Grant P A, Duggan L, C\u00f4t\u00e9 J, Roberts S M, Brownell J E, Candau R, Ohba R, Owen-Hughes T, Allis C D, Winston F, Berger S L, Workman J L", "reference": { "type": "PubMed", "id": "9224714", "url": "https://pubmed.ncbi.nlm.nih.gov/9224714" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35177-1", "protein_name": "SAGA complex subunit SPT7", "gene_name": "SPT7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03330-1", "protein_name": "Histone acetyltransferase GCN5", "gene_name": "GCN5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02336-1", "protein_name": "SAGA complex subunit ADA2", "gene_name": "ADA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12433-1", "protein_name": "Protein AHC1", "gene_name": "AHC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P06844-1", "protein_name": "SAGA complex subunit SPT3", "gene_name": "SPT3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35177", "url": "https://www.uniprot.org/uniprotkb/P35177" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9224714", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tra1p is a component of the yeast Ada.Spt transcriptional regulatory complexes.", "journal": "J. Biol. Chem.", "date": "1998", "authors": "Saleh A, Schieltz D, Ting N, McMahon S B, Litchfield D W, Yates J R, Lees-Miller S P, Cole M D, Brandl C J", "reference": { "type": "PubMed", "id": "9756893", "url": "https://pubmed.ncbi.nlm.nih.gov/9756893" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35177-1", "protein_name": "SAGA complex subunit SPT7", "gene_name": "SPT7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38811-1", "protein_name": "SAGA complex/NuA4 acetyltransferase complex subunit TRA1", "gene_name": "TRA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32494-1", "protein_name": "SAGA complex subunit NGG1", "gene_name": "NGG1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35177", "url": "https://www.uniprot.org/uniprotkb/P35177" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9756893", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional organization of the yeast SAGA complex: distinct components involved in structural integrity, nucleosome acetylation, and TATA-binding protein interaction.", "journal": "Molecular and cellular biology", "date": "1999-01", "authors": "Sterner D E, Grant P A, Roberts S M, Duggan L J, Belotserkovskaya R, Pacella L A, Winston F, Workman J L, Berger S L", "reference": { "type": "PubMed", "id": "9858534", "url": "https://pubmed.ncbi.nlm.nih.gov/9858534" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35177-1", "protein_name": "SAGA complex subunit SPT7", "gene_name": "SPT7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38915-1", "protein_name": "SAGA complex subunit SPT8", "gene_name": "SPT8", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35177", "url": "https://www.uniprot.org/uniprotkb/P35177" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9858534", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": 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Rev. Cell Dev. Biol.", "date": "1999", "authors": "Johnson A E, van Waes M A", "reference": { "type": "PubMed", "id": "10611978", "url": "https://pubmed.ncbi.nlm.nih.gov/10611978" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35179-1", "protein_name": "Protein transport protein SSS1", "gene_name": "SSS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P52870-1", "protein_name": "Protein transport protein SBH1", "gene_name": "SBH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32915-1", "protein_name": "Protein transport protein SEC61", "gene_name": "SEC61", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35179", "url": "https://www.uniprot.org/uniprotkb/P35179" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10611978", "abstract": "", 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Deshaies R J, Scheckman R, K\u00e9p\u00e8s F", "reference": { "type": "PubMed", "id": "8223425", "url": "https://pubmed.ncbi.nlm.nih.gov/8223425" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35179-1", "protein_name": "Protein transport protein SSS1", "gene_name": "SSS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35178-1", "protein_name": "Ribosomal RNA-processing protein 1", "gene_name": "RRP1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35179", "url": "https://www.uniprot.org/uniprotkb/P35179" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8223425", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"uniprot_canonical_ac": "P35179-1", "protein_name": "Protein transport protein SSS1", "gene_name": "SSS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P52870-1", "protein_name": "Protein transport protein SBH1", "gene_name": "SBH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32915-1", "protein_name": "Protein transport protein SEC61", "gene_name": "SEC61", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35179", "url": "https://www.uniprot.org/uniprotkb/P35179" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8929540", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Adaptor complex-independent clathrin function in yeast.", "journal": "Molecular biology of the cell", "date": "1999-11", "authors": "Yeung B G, Phan H L, Payne G S", "reference": { "type": "PubMed", "id": "10564262", "url": "https://pubmed.ncbi.nlm.nih.gov/10564262" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35181-1", "protein_name": "AP-1 complex subunit sigma-1", "gene_name": "APS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38700-1", "protein_name": "Adaptin medium chain homolog APM2", "gene_name": "APM2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38065-1", "protein_name": "AP-2 complex subunit alpha", "gene_name": "APL3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q00381-1", "protein_name": "AP-2 complex subunit sigma", "gene_name": "APS2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q00776-1", "protein_name": "AP-1 complex subunit mu-1-I", "gene_name": "APM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12028-1", "protein_name": "AP-1 complex subunit gamma-1", "gene_name": "APL4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q99186-1", "protein_name": "AP-2 complex subunit mu", "gene_name": "APM4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P27351-1", "protein_name": "AP-2 complex subunit beta", "gene_name": "APL1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36000-1", "protein_name": "AP-1 complex subunit beta-1", "gene_name": "APL2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35181", "url": "https://www.uniprot.org/uniprotkb/P35181" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10564262", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Saccharomyces cerevisiae APS1 gene encodes a homolog of the small subunit of the mammalian clathrin AP-1 complex: evidence for functional interaction with clathrin at the Golgi complex.", "journal": "EMBO J.", "date": "1994", "authors": "Phan H L, Finlay J A, Chu D S, Tan P K, Kirchhausen T, Payne G S", "reference": { "type": "PubMed", "id": "8157009", "url": "https://pubmed.ncbi.nlm.nih.gov/8157009" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35181-1", "protein_name": "AP-1 complex subunit sigma-1", "gene_name": "APS1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35181", "url": "https://www.uniprot.org/uniprotkb/P35181" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning of the YAP19 gene encoding a putative yeast homolog of AP19, the mammalian small chain of the clathrin-assembly proteins.", "journal": "Biochim. Biophys. Acta", "date": "1993", "authors": "Nakai M, Takada T, Endo T", "reference": { "type": "PubMed", "id": "8373805", "url": "https://pubmed.ncbi.nlm.nih.gov/8373805" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35181-1", "protein_name": "AP-1 complex subunit sigma-1", "gene_name": "APS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35200-1", "protein_name": "Protein UPS2, mitochondrial", "gene_name": "UPS2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32469-1", "protein_name": "Diphthine methyl ester synthase", "gene_name": "DPH5", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35181", "url": "https://www.uniprot.org/uniprotkb/P35181" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8373805", "abstract": "", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sequence around the centromere of Saccharomyces cerevisiae chromosome II: similarity of CEN2 to CEN4.", "journal": "Yeast", "date": "1994", "authors": "Wolfe K H, Lohan A J", "reference": { "type": "PubMed", "id": "8091860", "url": "https://pubmed.ncbi.nlm.nih.gov/8091860" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35194-1", "protein_name": "U3 small nucleolar RNA-associated protein 20", "gene_name": "UTP20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": 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cis-prenyltransferases with different properties and localizations. Implication for their distinct physiological roles in dolichol synthesis.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "2001-06", "authors": "Sato M, Fujisaki S, Sato K, Nishimura Y, Nakano A", "reference": { "type": "PubMed", "id": "11442630", "url": "https://pubmed.ncbi.nlm.nih.gov/11442630" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35196-1", "protein_name": "Dehydrodolichyl diphosphate synthase complex subunit RER2", "gene_name": "RER2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03175-1", "protein_name": "Dehydrodolichyl diphosphate synthase complex subunit SRT1", "gene_name": "SRT1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35196", "url": "https://www.uniprot.org/uniprotkb/P35196" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Precise bacterial polyprenol length control fails in Saccharomyces cerevisiae.", "journal": "Biopolymers", "date": "2007-06-05", "authors": "Pozna\u0144ski Jaros\u0142aw, Szkopinska Anna", "reference": { "type": "PubMed", "id": "17345630", "url": "https://pubmed.ncbi.nlm.nih.gov/17345630" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35196-1", "protein_name": "Dehydrodolichyl diphosphate synthase complex subunit RER2", "gene_name": "RER2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03175-1", "protein_name": "Dehydrodolichyl diphosphate synthase complex subunit SRT1", "gene_name": "SRT1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35196", "url": "https://www.uniprot.org/uniprotkb/P35196" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.17345630", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MIF2 is required for mitotic spindle integrity during anaphase spindle elongation in Saccharomyces cerevisiae.", "journal": "The Journal of cell biology", "date": "1993-10", "authors": "Brown M T, Goetsch L, Hartwell L H", "reference": { "type": "PubMed", "id": "8408221", "url": "https://pubmed.ncbi.nlm.nih.gov/8408221" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35201-1", "protein_name": "Inner kinetochore subunit MIF2", "gene_name": "MIF2", "tax_name": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A zinc finger protein, essential for chromosome segregation, constitutes a putative DNA binding subunit of the Saccharomyces cerevisiae kinetochore complex, Cbf3.", "journal": "EMBO J.", "date": "1994", "authors": "Lechner J", "reference": { "type": "PubMed", "id": "7957085", "url": "https://pubmed.ncbi.nlm.nih.gov/7957085" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35203-1", "protein_name": "Centromere DNA-binding protein complex CBF3 subunit C", "gene_name": "CTF13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40969-1", "protein_name": "Centromere DNA-binding protein complex CBF3 subunit B", "gene_name": "CEP3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35203", "url": "https://www.uniprot.org/uniprotkb/P35203" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7957085", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of essential components of the S. cerevisiae kinetochore.", "journal": "Cell", "date": "1993", "authors": "Doheny K F, Sorger P K, Hyman A A, Tugendreich S, Spencer F, Hieter P", "reference": { "type": "PubMed", "id": "8500169", "url": "https://pubmed.ncbi.nlm.nih.gov/8500169" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35203-1", "protein_name": "Centromere DNA-binding protein complex CBF3 subunit C", "gene_name": "CTF13", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35203", "url": "https://www.uniprot.org/uniprotkb/P35203" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8500169", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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Genet.", "date": "1989", "authors": "Schulze M, Rodel G", "reference": { "type": "PubMed", "id": "2543907", "url": "https://pubmed.ncbi.nlm.nih.gov/2543907" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35206-1", "protein_name": "Mannosyl phosphorylinositol ceramide synthase regulatory protein CSG2", "gene_name": "CSG2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23833-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35206", "url": "https://www.uniprot.org/uniprotkb/P35206" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.2543907", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel protein, CSG2p, is required for Ca2+ regulation in Saccharomyces cerevisiae.", "journal": "J. Biol. Chem.", "date": "1994", "authors": "Beeler T, Gable K, Zhao C, Dunn T", "reference": { "type": "PubMed", "id": "8125941", "url": "https://pubmed.ncbi.nlm.nih.gov/8125941" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35206-1", "protein_name": "Mannosyl phosphorylinositol ceramide synthase regulatory protein CSG2", "gene_name": "CSG2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35206", "url": "https://www.uniprot.org/uniprotkb/P35206" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8125941", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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protein RHO1", "gene_name": "RHO1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35688", "url": "https://www.uniprot.org/uniprotkb/P35688" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11447600", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"P43556-1", "protein_name": "Rho-GTPase-activating protein RGD2", "gene_name": "RGD2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P06780-1", "protein_name": "GTP-binding protein RHO1", "gene_name": "RHO1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35688", "url": "https://www.uniprot.org/uniprotkb/P35688" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11591390", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], 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[] } ] }, { "title": "MMI1 (YKL056c, TMA19), the yeast orthologue of the translationally controlled tumor protein (TCTP) has apoptotic functions and interacts with both microtubules and mitochondria.", "journal": "Biochimica et biophysica acta", "date": "2006", "authors": "Rinnerthaler Mark, Jarolim Stefanie, Heeren Gino, Palle Elfriede, Perju Simona, Klinger Harald, Bogengruber Edith, Madeo Frank, Braun Ralf J, Breitenbach-Koller Lore, Breitenbach Michael, Laun Peter", "reference": { "type": "PubMed", "id": "16806052", "url": "https://pubmed.ncbi.nlm.nih.gov/16806052" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35691-1", "protein_name": "Translationally-controlled tumor protein homolog", "gene_name": "TMA19", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35691", "url": "https://www.uniprot.org/uniprotkb/P35691" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16806052", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sequence of a 28.6 kb region of yeast chromosome XI includes the FBA1 and TOA2 genes, an open reading frame (ORF) similar to a translationally controlled tumour protein, one ORF containing motifs also found in plant storage proteins and 13 ORFs with weak or no homology to known proteins.", "journal": "Yeast", "date": "1994", "authors": "Rasmussen S W", "reference": { "type": "PubMed", "id": "8091862", "url": "https://pubmed.ncbi.nlm.nih.gov/8091862" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35691-1", "protein_name": "Translationally-controlled tumor protein homolog", "gene_name": "TMA19", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35728-1", "protein_name": "Protein MPE1", "gene_name": "MPE1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35729-1", "protein_name": "Nucleoporin NUP120", "gene_name": "NUP120", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35732-1", "protein_name": "RNA polymerase II degradation factor 1", "gene_name": "DEF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35725-1", "protein_name": "Uncharacterized protein YKL063C", "gene_name": "YKL327", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35736-1", "protein_name": "Uncharacterized protein YKL050C", "gene_name": "YKL263; YKL301", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q2V2P2-1", "protein_name": "Uncharacterized protein YKL065W-A", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33749-1", "protein_name": "Zinc finger protein MSN4", "gene_name": "MSN4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35723-1", "protein_name": "Endoplasmic reticulum transmembrane protein 1", "gene_name": "YET1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35727-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit BLI1", "gene_name": "BLI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35731-1", "protein_name": "3-oxoacyl-[acyl-carrier-protein] reductase", "gene_name": "OAR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35735-1", "protein_name": "Protein SFK1", "gene_name": "SFK1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35724-1", "protein_name": "Manganese resistance protein MNR2", "gene_name": "MNR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P14540-1", "protein_name": "Fructose-bisphosphate aldolase", "gene_name": "FBA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32774-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "TOA2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35734-1", "protein_name": "DASH complex subunit ASK1", "gene_name": "ASK1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "O60200-1", "protein_name": "Mitochondrial distribution and morphology protein 35", "gene_name": "MDM35", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35691", "url": "https://www.uniprot.org/uniprotkb/P35691" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8091862", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 17 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nup120p: a yeast nucleoporin required for NPC distribution and mRNA transport.", "journal": "J. Cell Biol.", "date": "1995", "authors": "Aitchison J D, Blobel G, Rout M P", "reference": { "type": "PubMed", "id": "8557736", "url": "https://pubmed.ncbi.nlm.nih.gov/8557736" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35729-1", "protein_name": "Nucleoporin NUP120", "gene_name": "NUP120", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35729", "url": "https://www.uniprot.org/uniprotkb/P35729" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8557736", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DNA damage-induced Def1-RNA polymerase II interaction and Def1 requirement for polymerase ubiquitylation in vitro.", "journal": "The Journal of biological chemistry", "date": "2004-07-16", "authors": "Reid James, Svejstrup Jesper Q", "reference": { "type": "PubMed", "id": "15166235", "url": "https://pubmed.ncbi.nlm.nih.gov/15166235" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35732-1", "protein_name": "RNA polymerase II degradation factor 1", "gene_name": "DEF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04050-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "RPO21", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P35732", "url": 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