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Cell", "date": "2001", "authors": "Liu PC, Thiele DJ", "reference": { "type": "PubMed", "id": "11694595", "url": "https://pubmed.ncbi.nlm.nih.gov/11694595" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99207-1", "protein_name": "Nucleolar complex protein 14", "gene_name": "NOP14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06287-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q99207", "url": "https://www.uniprot.org/uniprotkb/Q99207" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11694595", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genome-wide expression analysis of NAP1 in Saccharomyces cerevisiae.", "journal": "Biochem. 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Commun.", "date": "2003", "authors": "Ohkuni Kentaro, Shirahige Katsuhiko, Kikuchi Akihiko", "reference": { "type": "PubMed", "id": "12788058", "url": "https://pubmed.ncbi.nlm.nih.gov/12788058" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99325-1", "protein_name": "Autophagy-related protein 40", "gene_name": "ATG40", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53058-1", "protein_name": "Protein VEL1", "gene_name": "VEL1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q99325", "url": "https://www.uniprot.org/uniprotkb/Q99325" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12788058", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"Mol. Gen. Genet.", "date": "1991", "authors": "Garrett J M, Singh K K, Vonder Haar R A, Emr S D", "reference": { "type": "PubMed", "id": "2017143", "url": "https://pubmed.ncbi.nlm.nih.gov/2017143" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P23248-1", "protein_name": "Small ribosomal subunit protein eS1B", "gene_name": "RPS1B", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P23248", "url": "https://www.uniprot.org/uniprotkb/P23248" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.2017143", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of Prp45p and Prp46p, essential pre-mRNA splicing factors.", "journal": "RNA (New York, N.Y.)", "date": "2003-01", "authors": "Albers Michael, Diment Ann, Muraru Mariela, Russell Caroline S, Beggs Jean D", "reference": { "type": "PubMed", "id": "12554883", "url": "https://pubmed.ncbi.nlm.nih.gov/12554883" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28004-1", "protein_name": "Pre-mRNA-processing protein 45", "gene_name": "PRP45", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12417-1", "protein_name": "Pre-mRNA-splicing factor PRP46", "gene_name": "PRP46", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28004", "url": "https://www.uniprot.org/uniprotkb/P28004" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12554883", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { 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On the number of genes and the identification of essential genes using temperature-sensitive-lethal mutations.", "journal": "J. Mol. Biol.", "date": "1992", "authors": "Harris S D, Cheng J, Pugh T A, Pringle J R", "reference": { "type": "PubMed", "id": "1583694", "url": "https://pubmed.ncbi.nlm.nih.gov/1583694" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28004-1", "protein_name": "Pre-mRNA-processing protein 45", "gene_name": "PRP45", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28005-1", "protein_name": "Ribonuclease P/MRP protein subunit POP5", "gene_name": "POP5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39732-1", "protein_name": "GLC7-interacting protein 4", "gene_name": "GIP4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28003-1", "protein_name": "SWIRM domain-containing protein FUN19", "gene_name": "FUN19", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28004", "url": "https://www.uniprot.org/uniprotkb/P28004" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1583694", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { 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"sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "In vivo analysis of nucleolar proteins modified by the yeast arginine methyltransferase Hmt1/Rmt1p.", "journal": "RNA (New York, N.Y.)", "date": "2003-06", "authors": "Xu Chong, Henry Pamela A, Setya Amit, Henry Michael F", "reference": { "type": "PubMed", "id": "12756332", "url": "https://pubmed.ncbi.nlm.nih.gov/12756332" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28007-1", "protein_name": "H/ACA ribonucleoprotein complex subunit GAR1", "gene_name": "GAR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P27476-1", "protein_name": "Nuclear localization sequence-binding protein", "gene_name": "NSR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38074-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "HMT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P15646-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "NOP1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28007", "url": "https://www.uniprot.org/uniprotkb/P28007" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12756332", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GAR1 is an essential small nucleolar RNP protein required for pre-rRNA processing in yeast.", "journal": "EMBO J.", "date": "1992", "authors": "Girard J P, Lehtonen H, Caizergues-Ferrer M, Amalric F, Tollervey D, Lapeyre B", "reference": { "type": "PubMed", "id": "1531632", "url": "https://pubmed.ncbi.nlm.nih.gov/1531632" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28007-1", "protein_name": "H/ACA ribonucleoprotein complex subunit GAR1", "gene_name": "GAR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28007", "url": "https://www.uniprot.org/uniprotkb/P28007" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1531632", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": 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S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28007", "url": "https://www.uniprot.org/uniprotkb/P28007" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 95, "end_pos": 95, "sequence_org": "D", "sequence_mut": "A", "comment": "Abolished pseudouridylation of rRNA. 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Microbiol.", "date": "1999", "authors": "Rahner A, Hiesinger M, Sch\u00fcller H J", "reference": { "type": "PubMed", "id": "10540293", "url": "https://pubmed.ncbi.nlm.nih.gov/10540293" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28240-1", "protein_name": "Isocitrate lyase", "gene_name": "ICL1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28240", "url": "https://www.uniprot.org/uniprotkb/P28240" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10540293", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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Chem.", "date": "2010", "authors": "Brown C Randell, Hung Guo-Chiuan, Dunton Danielle, Chiang Hui-Ling", "reference": { "type": "PubMed", "id": "20457600", "url": "https://pubmed.ncbi.nlm.nih.gov/20457600" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28240-1", "protein_name": "Isocitrate lyase", "gene_name": "ICL1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28240", "url": "https://www.uniprot.org/uniprotkb/P28240" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.20457600", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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J.", "date": "1996", "authors": "Taylor K M, Kaplan C P, Gao X, Baker A", "reference": { "type": "PubMed", "id": "8870676", "url": "https://pubmed.ncbi.nlm.nih.gov/8870676" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28240-1", "protein_name": "Isocitrate lyase", "gene_name": "ICL1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28240", "url": "https://www.uniprot.org/uniprotkb/P28240" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8870676", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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J.", "date": "1998", "authors": "Ordiz I, Herrero P, Rodicio R, Gancedo J M, Moreno F", "reference": { "type": "PubMed", "id": "9425123", "url": "https://pubmed.ncbi.nlm.nih.gov/9425123" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28240-1", "protein_name": "Isocitrate lyase", "gene_name": "ICL1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28240", "url": "https://www.uniprot.org/uniprotkb/P28240" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9425123", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NAD(+)-dependent isocitrate dehydrogenase. Cloning, nucleotide sequence, and disruption of the IDH2 gene from Saccharomyces cerevisiae.", "journal": "J. Biol. 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Bacteriol.", "date": "1990", "authors": "Keys D A, McAlister-Henn L", "reference": { "type": "PubMed", "id": "2198251", "url": "https://pubmed.ncbi.nlm.nih.gov/2198251" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28241-1", "protein_name": "Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial", "gene_name": "IDH2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28834-1", "protein_name": "Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial", "gene_name": "IDH1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28241", "url": "https://www.uniprot.org/uniprotkb/P28241" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.2198251", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dihydroorotate dehydrogenase from Saccharomyces cerevisiae: spectroscopic investigations with the recombinant enzyme throw light on catalytic properties and metabolism of fumarate analogues.", "journal": "FEMS yeast research", "date": "2007-09", "authors": "Zameitat Elke, Pierik Antonio J, Zocher Kathleen, L\u00f6ffler Monika", "reference": { "type": "PubMed", "id": "17617217", "url": "https://pubmed.ncbi.nlm.nih.gov/17617217" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28272-1", "protein_name": "Dihydroorotate dehydrogenase (fumarate)", "gene_name": "URA1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28272", "url": "https://www.uniprot.org/uniprotkb/P28272" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.17617217", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The complete sequencing of a 24.6 kb segment of yeast chromosome XI identified the known loci URA1, SAC1 and TRP3, and revealed 6 new open reading frames including homologues to the threonine dehydratases, membrane transporters, hydantoinases and the phospholipase A2-activating protein.", "journal": "Yeast", "date": "1994", "authors": "Tzermia M, Horaitis O, Alexandraki D", "reference": { "type": "PubMed", "id": "7941750", "url": "https://pubmed.ncbi.nlm.nih.gov/7941750" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28272-1", "protein_name": "Dihydroorotate dehydrogenase (fumarate)", "gene_name": "URA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36007-1", "protein_name": "L-threo-3-hydroxyaspartate ammonia-lyase", "gene_name": "SRY1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36035-1", "protein_name": "Carboxylic acid 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"UniProtKB", "id": "P28272", "url": "https://www.uniprot.org/uniprotkb/P28272" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.7941750", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 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"Identification of Ser424 as the protein kinase A phosphorylation site in CTP synthetase from Saccharomyces cerevisiae.", "journal": "Biochemistry", "date": "1999-07-06", "authors": "Park T S, Ostrander D B, Pappas A, Carman G M", "reference": { "type": "PubMed", "id": "10393561", "url": "https://pubmed.ncbi.nlm.nih.gov/10393561" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28274-1", "protein_name": "CTP synthase 1", "gene_name": "URA7", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28274", "url": "https://www.uniprot.org/uniprotkb/P28274" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "phosphorylation": [ { "start_pos": 424, "end_pos": 424, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": 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Gen. Genet.", "date": "1991", "authors": "Ozier-Kalogeropoulos O, Fasiolo F, Adeline M T, Collin J, Lacroute F", "reference": { "type": "PubMed", "id": "1753946", "url": "https://pubmed.ncbi.nlm.nih.gov/1753946" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28274-1", "protein_name": "CTP synthase 1", "gene_name": "URA7", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28274", "url": "https://www.uniprot.org/uniprotkb/P28274" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1753946", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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characterization of CTP synthetase, the product of the URA7 gene in Saccharomyces cerevisiae.", "journal": "Biochemistry", "date": "1994", "authors": "Yang W L, McDonough V M, Ozier-Kalogeropoulos O, Adeline M T, Flocco M T, Carman G M", "reference": { "type": "PubMed", "id": "8075080", "url": "https://pubmed.ncbi.nlm.nih.gov/8075080" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28274-1", "protein_name": "CTP synthase 1", "gene_name": "URA7", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28274", "url": "https://www.uniprot.org/uniprotkb/P28274" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8075080", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Microbiol.", "date": "1999", "authors": "Kapteyn J C, Van Egmond P, Sievi E, Van Den Ende H, Makarow M, Klis F M", "reference": { "type": "PubMed", "id": "10209754", "url": "https://pubmed.ncbi.nlm.nih.gov/10209754" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28319-1", "protein_name": "Cell wall protein CWP1", "gene_name": "CWP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32478-1", "protein_name": "Cell wall mannoprotein HSP150", "gene_name": "HSP150", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28319", "url": "https://www.uniprot.org/uniprotkb/P28319" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10209754", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Low external pH induces HOG1-dependent changes in the organization of the Saccharomyces cerevisiae cell wall.", "journal": "Mol. Microbiol.", "date": "2001", "authors": "Kapteyn J C, ter Riet B, Vink E, Blad S, De Nobel H, Van Den Ende H, Klis F M", "reference": { "type": "PubMed", "id": "11136466", "url": "https://pubmed.ncbi.nlm.nih.gov/11136466" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28319-1", "protein_name": "Cell wall protein CWP1", "gene_name": "CWP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40092-1", "protein_name": "Uncharacterized cell wall protein SPI1", "gene_name": "SPI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40442-1", "protein_name": "Secreted protein CSS1", "gene_name": "CSS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32485-1", "protein_name": "Mitogen-activated protein kinase HOG1", "gene_name": "HOG1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28319", "url": 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two flanking reading frames located within a 3.2 kb EcoRI fragment from chromosome X of Saccharomyces cerevisiae.", "journal": "Yeast", "date": "1992", "authors": "Forrov\u00e1 H, Kolarov J, Ghislain M, Goffeau A", "reference": { "type": "PubMed", "id": "1626433", "url": "https://pubmed.ncbi.nlm.nih.gov/1626433" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28319-1", "protein_name": "Cell wall protein CWP1", "gene_name": "CWP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28320-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28321-1", "protein_name": "Monoglyceride lipase", "gene_name": "YJU3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28319", "url": "https://www.uniprot.org/uniprotkb/P28319" } ], "common_name": "Baker's yeast", "glygen_name": 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faecitabidus protease I.", "journal": "J. Biochem.", "date": "1995", "authors": "Shimoi H, Iimura Y, Obata T", "reference": { "type": "PubMed", "id": "8543563", "url": "https://pubmed.ncbi.nlm.nih.gov/8543563" }, "referenced_glycans": [ { "glytoucan_ac": "G51056AN" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P28319-1", "protein_name": "Cell wall protein CWP1", "gene_name": "CWP1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28319", "url": "https://www.uniprot.org/uniprotkb/P28319" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8543563", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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spliceosome-binding domain of Yju2 functions in the first step and bypasses Prp16 in the second step of splicing.", "journal": "Molecular and cellular biology", "date": "2013-05", "authors": "Chiang Ting-Wei, Cheng Soo-Chen", "reference": { "type": "PubMed", "id": "23438600", "url": "https://pubmed.ncbi.nlm.nih.gov/23438600" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28320-1", "protein_name": "Splicing factor YJU2", "gene_name": "YJU2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28320", "url": "https://www.uniprot.org/uniprotkb/P28320" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.23438600", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Bacteriol.", "date": "1999", "authors": "Athenstaedt K, Zweytick D, Jandrositz A, Kohlwein S D, Daum G", "reference": { "type": "PubMed", "id": "10515935", "url": "https://pubmed.ncbi.nlm.nih.gov/10515935" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28321-1", "protein_name": "Monoglyceride lipase", "gene_name": "YJU3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P30624-1", "protein_name": "Long-chain-fatty-acid--CoA ligase 1", "gene_name": "FAA1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34163-1", "protein_name": "Sterol esterase TGL1", "gene_name": "TGL1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08448-1", "protein_name": "Lipid droplet phospholipase 1", "gene_name": "LPL1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12063-1", "protein_name": "Dehydrodolichyl diphosphate synthase complex subunit NUS1", "gene_name": "NUS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": 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Lichtenegger Joerg, Schittmayer Matthias, Das Krishna Mohan Padmanabha, Mayer Nicole, Breinbauer Rolf, Birner-Gruenberger Ruth, Gruber Christian C, Zimmermann Robert, Gruber Karl, Oberer Monika", "reference": { "type": "PubMed", "id": "26869448", "url": "https://pubmed.ncbi.nlm.nih.gov/26869448" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28321-1", "protein_name": "Monoglyceride lipase", "gene_name": "YJU3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28321", "url": "https://www.uniprot.org/uniprotkb/P28321" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.26869448", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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in Saccharomyces cerevisae.", "journal": "Molecular biology of the cell", "date": "2001-11", "authors": "Schorling S, Vall\u00e9e B, Barz W P, Riezman H, Oesterhelt D", "reference": { "type": "PubMed", "id": "11694577", "url": "https://pubmed.ncbi.nlm.nih.gov/11694577" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28496-1", "protein_name": "Ceramide synthase LAC1", "gene_name": "LAC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38703-1", "protein_name": "Ceramide synthase LAG1", "gene_name": "LAG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02896-1", "protein_name": "Alkaline ceramidase YDC1", "gene_name": "YDC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38298-1", "protein_name": "Alkaline ceramidase YPC1", "gene_name": "YPC1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28496", "url": 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Cell Biol.", "date": "1992", "authors": "Amatruda J F, Gattermeir D J, Karpova T S, Cooper J A", "reference": { "type": "PubMed", "id": "1447293", "url": "https://pubmed.ncbi.nlm.nih.gov/1447293" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28496-1", "protein_name": "Ceramide synthase LAC1", "gene_name": "LAC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28495-1", "protein_name": "F-actin-capping protein subunit alpha", "gene_name": "CAP1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28496", "url": "https://www.uniprot.org/uniprotkb/P28496" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1447293", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential regulation of ceramide synthase components LAC1 and LAG1 in Saccharomyces cerevisiae.", "journal": "Eukaryot. 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Yeast ceramide synthases, Lag1 and Lac1, have distinct substrate specificity.", "journal": "Journal of cell science", "date": "2019-06-24", "authors": "Megyeri M\u00e1rton, Prasad Rupali, Volpert Giora, Sliwa-Gonzalez Andrzej, Haribowo A Galih, Aguilera-Romero Auxiliadora, Riezman Howard, Barral Yves, Futerman Anthony H, Schuldiner Maya", "reference": { "type": "PubMed", "id": "31164445", "url": "https://pubmed.ncbi.nlm.nih.gov/31164445" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28496-1", "protein_name": "Ceramide synthase LAC1", "gene_name": "LAC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38703-1", "protein_name": "Ceramide synthase LAG1", "gene_name": "LAG1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28496", "url": "https://www.uniprot.org/uniprotkb/P28496" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.31164445", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure and mechanism of a eukaryotic ceramide synthase complex.", "journal": "The EMBO journal", "date": "2023-12-11", "authors": "Xie Tian, Fang Qi, Zhang Zike, Wang Yanfei, Dong Feitong, Gong Xin", "reference": { "type": "PubMed", "id": "37953642", "url": "https://pubmed.ncbi.nlm.nih.gov/37953642" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28496-1", "protein_name": "Ceramide synthase LAC1", "gene_name": "LAC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38703-1", "protein_name": "Ceramide synthase LAG1", "gene_name": "LAG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03579-1", "protein_name": "Ceramide synthase subunit LIP1", "gene_name": "LIP1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28496", "url": "https://www.uniprot.org/uniprotkb/P28496" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 186, "end_pos": 186, "sequence_org": "S", "sequence_mut": "A", "comment": "Does not affect the enzymatic activity of the LAC1-LIP1 complex.", "evidence": [ { "database": "UniProtKB", "id": "P28496", "url": "https://www.uniprot.org/uniprotkb/P28496" }, { "database": "PubMed", "id": "37953642", "url": "https://pubmed.ncbi.nlm.nih.gov/37953642" } ], "uniprot_canonical_ac": "P28496-1" }, { "start_pos": 227, "end_pos": 227, "sequence_org": "Q", "sequence_mut": "A", "comment": "About 80% loss in enzymatic activity of the LAC1-LIP1 complex.", "evidence": [ { "database": "UniProtKB", "id": "P28496", "url": 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Cell Biol.", "date": "1992", "authors": "Roof D M, Meluh P B, Rose M D", "reference": { "type": "PubMed", "id": "1618910", "url": "https://pubmed.ncbi.nlm.nih.gov/1618910" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28743-1", "protein_name": "Kinesin-like protein KIP2", "gene_name": "KIP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P07267-1", "protein_name": "Saccharopepsin", "gene_name": "PEP4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P28742", "url": "https://www.uniprot.org/uniprotkb/P28742" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.1618910", "abstract": "", "glycosylation": [], 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