[ { "title": "The yeast Shu complex couples error-free post-replication repair to homologous recombination.", "journal": "Molecular microbiology", "date": "2009-07", "authors": "Ball Lindsay G, Zhang Ke, Cobb Jennifer A, Boone Charles, Xiao Wei", "reference": { "type": "PubMed", "id": "19496932", "url": "https://pubmed.ncbi.nlm.nih.gov/19496932" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12318-1", "protein_name": "Platinum sensitivity protein 3", "gene_name": "PSY3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40465-1", "protein_name": "Chromosome segregation in meiosis protein 2", "gene_name": "CSM2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38751-1", "protein_name": "Suppressor of HU sensitivity involved in recombination protein 1", "gene_name": "SHU1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38957-1", "protein_name": "Suppressor of hydroxyurea sensitivity protein 2", "gene_name": "SHU2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12318", "url": "https://www.uniprot.org/uniprotkb/Q12318" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.19496932", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional characterization of nuclear localization signals in yeast Sm proteins.", "journal": "Mol. Cell. Biol.", "date": "2000", "authors": "Bordonn\u00e9 R", "reference": { "type": "PubMed", "id": "11027265", "url": "https://pubmed.ncbi.nlm.nih.gov/11027265" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12330-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SME1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02260-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SMD1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40018-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein B", "gene_name": "SMB1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12330", "url": "https://www.uniprot.org/uniprotkb/Q12330" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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Biol. Chem.", "date": "1998", "authors": "Ruiz-Garc\u00eda A B, Sendra R, Galiana M, Pamblanco M, P\u00e9rez-Ort\u00edn J E, Tordera V", "reference": { "type": "PubMed", "id": "9575221", "url": "https://pubmed.ncbi.nlm.nih.gov/9575221" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12341-1", "protein_name": "Histone acetyltransferase type B catalytic subunit", "gene_name": "HAT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39984-1", "protein_name": "Histone acetyltransferase type B subunit 2", "gene_name": "HAT2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12341", "url": "https://www.uniprot.org/uniprotkb/Q12341" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9575221", "abstract": "", "glycosylation": [], "mutagenesis": [], 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Sciences of the United States of America", "date": "2000-08-15", "authors": "Goldman A S, Lichten M", "reference": { "type": "PubMed", "id": "10944222", "url": "https://pubmed.ncbi.nlm.nih.gov/10944222" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12366-1", "protein_name": "Non-disjunction protein 1", "gene_name": "NDJ1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12366", "url": "https://www.uniprot.org/uniprotkb/Q12366" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10944222", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Garrison B S, Ohsumi Y, Klionsky D J", "reference": { "type": "PubMed", "id": "10712513", "url": "https://pubmed.ncbi.nlm.nih.gov/10712513" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12380-1", "protein_name": "Autophagy protein 5", "gene_name": "ATG5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38316-1", "protein_name": "Ubiquitin-like protein ATG12", "gene_name": "ATG12", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12380", "url": "https://www.uniprot.org/uniprotkb/Q12380" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10712513", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"protein_name": "Autophagy protein 5", "gene_name": "ATG5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38316-1", "protein_name": "Ubiquitin-like protein ATG12", "gene_name": "ATG12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38862-1", "protein_name": "Ubiquitin-like modifier-activating enzyme ATG7", "gene_name": "ATG7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40344-1", "protein_name": "Autophagy-related protein 3", "gene_name": "ATG3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12380", "url": "https://www.uniprot.org/uniprotkb/Q12380" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12965207", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Uth1p is involved in the autophagic degradation of mitochondria.", "journal": "The Journal of biological chemistry", "date": "2004-09-10", "authors": "Kissov\u00e1 Ingrid, Deffieu Ma\u00efka, Manon St\u00e9phen, Camougrand Nadine", "reference": { "type": "PubMed", "id": "15247238", "url": "https://pubmed.ncbi.nlm.nih.gov/15247238" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12380-1", "protein_name": "Autophagy protein 5", "gene_name": "ATG5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36135-1", "protein_name": "Probable secreted beta-glucosidase UTH1", "gene_name": "UTH1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12380", "url": "https://www.uniprot.org/uniprotkb/Q12380" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15247238", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Impairing the bioenergetic status and the biogenesis of mitochondria triggers mitophagy in yeast.", "journal": "Cell death and differentiation", "date": "2005-12", "authors": "Priault M, Salin B, Schaeffer J, Vallette F M, di Rago J-P, Martinou J-C", "reference": { "type": "PubMed", "id": "15947785", "url": "https://pubmed.ncbi.nlm.nih.gov/15947785" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12380-1", "protein_name": "Autophagy protein 5", "gene_name": "ATG5", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12380", "url": "https://www.uniprot.org/uniprotkb/Q12380" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15947785", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression, purification and crystallization of the Atg5-Atg16 complex essential for autophagy.", "journal": "Acta Crystallogr. F", "date": "2006", "authors": "Matsushita Minako, Suzuki Nobuo N, Fujioka Yuko, Ohsumi Yoshinori, Inagaki Fuyuhiko", "reference": { "type": "PubMed", "id": "17012802", "url": "https://pubmed.ncbi.nlm.nih.gov/17012802" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12380-1", "protein_name": "Autophagy protein 5", "gene_name": "ATG5", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12380", "url": "https://www.uniprot.org/uniprotkb/Q12380" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.17012802", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Synchrotron Radiat.", "date": "2008", "authors": "Noda Nobuo N, Fujioka Yuko, Ohsumi Yoshinori, Inagaki Fuyuhiko", "reference": { "type": "PubMed", "id": "18421155", "url": "https://pubmed.ncbi.nlm.nih.gov/18421155" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12380-1", "protein_name": "Autophagy protein 5", "gene_name": "ATG5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38316-1", "protein_name": "Ubiquitin-like protein ATG12", "gene_name": "ATG12", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12380", "url": "https://www.uniprot.org/uniprotkb/Q12380" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.18421155", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sequence analysis of a 37.6 kbp cosmid clone from the right arm of Saccharomyces cerevisiae chromosome XII, carrying YAP3, HOG1, SNR6, tRNA-Arg3 and 23 new open reading frames, among which several homologies to proteins involved in cell division control and to mammalian growth factors and other animal proteins are found.", "journal": "Yeast", "date": "1997", "authors": "Verhasselt P, Volckaert G", "reference": { "type": "PubMed", "id": "9090053", "url": "https://pubmed.ncbi.nlm.nih.gov/9090053" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12440-1", "protein_name": "Anaphase-promoting complex subunit 2", "gene_name": "APC2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32329-1", "protein_name": "Aspartic proteinase 3", "gene_name": "YPS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38013-1", "protein_name": "Peroxiredoxin AHP1", "gene_name": "AHP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12130-1", "protein_name": "Uncharacterized protein YLR112W", "gene_name": "L2928; L9354.3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12138-1", "protein_name": "Putative uncharacterized protein YLR125W", "gene_name": "L3101", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12259-1", "protein_name": "BTB/POZ domain-containing protein YLR108C", "gene_name": "L2913", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12288-1", "protein_name": "Putative glutamine amidotransferase YLR126C", "gene_name": "L3105", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12312-1", "protein_name": "Uncharacterized protein YLR122C", "gene_name": "L2967; L9233.11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12500-1", "protein_name": "Late secretory pathway protein AVL9", "gene_name": "AVL9", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12528-1", "protein_name": "Uncharacterized protein YLR111W", "gene_name": "L2925; L9354.4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12102-1", "protein_name": "Cleavage factor two protein 2", "gene_name": "CFT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12127-1", "protein_name": "Covalently-linked cell wall protein 12", "gene_name": "CCW12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12303-1", "protein_name": "Aspartic proteinase yapsin-3", "gene_name": "YPS3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12395-1", "protein_name": "Defective in cullin neddylation protein 1", "gene_name": "DCN1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12186-1", "protein_name": "Branchpoint-bridging protein", "gene_name": "MSL5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12090-1", "protein_name": "RNA exonuclease 3", "gene_name": "REX3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12354-1", "protein_name": "Acyl-protein thioesterase 1", "gene_name": "L2955", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12309-1", "protein_name": "Pre-mRNA-splicing factor CLF1", "gene_name": "CLF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q99176-1", "protein_name": "Protein SRN2", "gene_name": "SRN2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32485-1", "protein_name": "Mitogen-activated protein kinase HOG1", "gene_name": "HOG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12019-1", "protein_name": "Midasin", "gene_name": "MDN1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12440", "url": "https://www.uniprot.org/uniprotkb/Q12440" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9090053", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the Saccharomyces cerevisiae ERG27 gene encoding the 3-keto reductase involved in C-4 sterol demethylation.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1999-10-26", "authors": "Gachotte D, Sen S E, Eckstein J, Barbuch R, Krieger M, Ray B D, Bard M", "reference": { "type": "PubMed", "id": "10535978", "url": "https://pubmed.ncbi.nlm.nih.gov/10535978" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12452-1", "protein_name": "3-keto-steroid reductase ERG27", "gene_name": "ERG27", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12452", "url": "https://www.uniprot.org/uniprotkb/Q12452" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10535978", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein-protein interactions among C-4 demethylation enzymes involved in yeast sterol biosynthesis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2002-07-23", "authors": "Mo C, Valachovic M, Randall S K, Nickels J T, Bard M", "reference": { "type": "PubMed", "id": "12119386", "url": "https://pubmed.ncbi.nlm.nih.gov/12119386" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12452-1", "protein_name": "3-keto-steroid reductase ERG27", "gene_name": "ERG27", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40030-1", "protein_name": "Ergosterol biosynthetic protein 28", "gene_name": "ERG28", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53199-1", "protein_name": "Sterol-4-alpha-carboxylate 3-dehydrogenase ERG26, decarboxylating", "gene_name": "ERG26", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53045-1", "protein_name": "C-4 methylsterol oxidase ERG25", "gene_name": "ERG25", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12452", "url": "https://www.uniprot.org/uniprotkb/Q12452" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12119386", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "In yeast sterol biosynthesis the 3-keto reductase protein (Erg27p) is required for oxidosqualene cyclase (Erg7p) activity.", "journal": "Biochimica et biophysica acta", "date": "2003-07-04", "authors": "Mo C, Milla P, Athenstaedt K, Ott R, Balliano G, Daum G, Bard M", "reference": { "type": "PubMed", "id": "12842197", "url": "https://pubmed.ncbi.nlm.nih.gov/12842197" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12452-1", "protein_name": "3-keto-steroid reductase ERG27", "gene_name": "ERG27", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38604-1", "protein_name": "Lanosterol synthase ERG7", "gene_name": "ERG7", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12452", "url": "https://www.uniprot.org/uniprotkb/Q12452" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12842197", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The spatial organization of lipid synthesis in the yeast Saccharomyces cerevisiae derived from large scale green fluorescent protein tagging and high resolution microscopy.", "journal": "Mol. Cell. Proteomics", "date": "2005", "authors": "Natter Klaus, Leitner Peter, Faschinger Alexander, Wolinski Heimo, McCraith Stephen, Fields Stanley, Kohlwein Sepp D", "reference": { "type": "PubMed", "id": "15716577", "url": "https://pubmed.ncbi.nlm.nih.gov/15716577" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12452-1", "protein_name": "3-keto-steroid reductase ERG27", "gene_name": "ERG27", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38226-1", "protein_name": "2-acyl-1-lysophosphatidylinositol acyltransferase", "gene_name": "CST26", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53199-1", "protein_name": "Sterol-4-alpha-carboxylate 3-dehydrogenase ERG26, decarboxylating", "gene_name": "ERG26", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53045-1", "protein_name": "C-4 methylsterol oxidase ERG25", "gene_name": "ERG25", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32352-1", "protein_name": "C-8 sterol isomerase ERG2", "gene_name": "ERG2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12452", "url": "https://www.uniprot.org/uniprotkb/Q12452" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15716577", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Erg28p is a key protein in the yeast sterol biosynthetic enzyme complex.", "journal": "Journal of lipid research", "date": "2005-09", "authors": "Mo Caiqing, Bard Martin", "reference": { "type": "PubMed", "id": "15995173", "url": "https://pubmed.ncbi.nlm.nih.gov/15995173" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12452-1", "protein_name": "3-keto-steroid reductase ERG27", "gene_name": "ERG27", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32353-1", "protein_name": "Delta(7)-sterol 5(6)-desaturase ERG3", "gene_name": "ERG3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32476-1", "protein_name": "Squalene epoxidase ERG1", "gene_name": "ERG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P54781-1", "protein_name": "C-22 sterol desaturase ERG5", "gene_name": "ERG5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40030-1", "protein_name": "Ergosterol biosynthetic protein 28", "gene_name": "ERG28", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53199-1", "protein_name": "Sterol-4-alpha-carboxylate 3-dehydrogenase ERG26, decarboxylating", "gene_name": "ERG26", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25087-1", "protein_name": "Sterol 24-C-methyltransferase ERG6", "gene_name": "ERG6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P10614-1", "protein_name": "Lanosterol 14-alpha demethylase CYP51", "gene_name": "ERG11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53045-1", "protein_name": "C-4 methylsterol oxidase ERG25", "gene_name": "ERG25", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12452", "url": "https://www.uniprot.org/uniprotkb/Q12452" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15995173", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { 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"sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The upstream activation site of a Ty2 element of yeast is necessary but not sufficient to promote maximal transcription of the element.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1987", "authors": "Liao X B, Clare J J, Farabaugh P J", "reference": { "type": "PubMed", "id": "2825192", "url": "https://pubmed.ncbi.nlm.nih.gov/2825192" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12472-1", "protein_name": "Transposon Ty2-DR1 Gag-Pol polyprotein", "gene_name": "TY2B-DR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12392-1", "protein_name": "Transposon Ty2-DR1 Gag polyprotein", "gene_name": "TY2A-DR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12472", "url": "https://www.uniprot.org/uniprotkb/Q12472" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.2825192", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel RING finger proteins, Air1p and Air2p, interact with Hmt1p and inhibit the arginine methylation of Npl3p.", "journal": "The Journal of biological chemistry", "date": "2000-10-20", "authors": "Inoue K, Mizuno T, Wada K, Hagiwara M", "reference": { "type": "PubMed", "id": "10896665", "url": "https://pubmed.ncbi.nlm.nih.gov/10896665" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12476-1", "protein_name": "Protein AIR2", "gene_name": "AIR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40507-1", "protein_name": "Protein AIR1", "gene_name": "AIR1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12476", "url": "https://www.uniprot.org/uniprotkb/Q12476" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10896665", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A new yeast poly(A) polymerase complex involved in RNA quality control.", "journal": "PLoS biology", "date": "2005-06", "authors": "Van\u00e1cov\u00e1 Step\u00e1nka, Wolf Jeannette, Martin Georges, Blank Diana, Dettwiler Sabine, Friedlein Arno, Langen Hanno, Keith G\u00e9rard, Keller Walter", "reference": { "type": "PubMed", "id": "15828860", "url": "https://pubmed.ncbi.nlm.nih.gov/15828860" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12476-1", "protein_name": "Protein AIR2", "gene_name": "AIR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47047-1", "protein_name": "ATP-dependent 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"table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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Cell", "date": "2024", "authors": "Chrustowicz Jakub, Sherpa Dawafuti, Li Jerry, Langlois Christine R, Papadopoulou Eleftheria C, Vu D Tung, Hehl Laura A, Karayel \u00d6zge, Beier Viola, von Gronau Susanne, M\u00fcller Judith, Prabu J Rajan, Mann Matthias, Kleiger Gary, Alpi Arno F, Schulman Brenda A", "reference": { "type": "PubMed", "id": "38113892", "url": "https://pubmed.ncbi.nlm.nih.gov/38113892" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12508-1", "protein_name": "E3 ubiquitin-protein ligase RMD5", "gene_name": "RMD5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40492-1", "protein_name": "GID complex subunit 9", "gene_name": "FYV10", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12508", "url": "https://www.uniprot.org/uniprotkb/Q12508" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes.", "journal": "RNA", "date": "2001", "authors": "Coller J M, Tucker M, Sheth U, Valencia-Sanchez M A, Parker R", "reference": { "type": "PubMed", "id": "11780629", "url": "https://pubmed.ncbi.nlm.nih.gov/11780629" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12517-1", "protein_name": "mRNA-decapping enzyme subunit 1", "gene_name": "DCP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25644-1", "protein_name": "Deadenylation-dependent mRNA-decapping factor PAT1", "gene_name": "PAT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39517-1", "protein_name": "ATP-dependent RNA helicase DHH1", "gene_name": "DHH1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12517", "url": "https://www.uniprot.org/uniprotkb/Q12517" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": 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"common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8948634", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Dr1/DRAP1 heterodimer is a global repressor of transcription in vivo.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1997-02-04", "authors": "Kim S, Na J G, Hampsey M, Reinberg D", "reference": { "type": "PubMed", "id": "9023340", "url": "https://pubmed.ncbi.nlm.nih.gov/9023340" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92317-1", "protein_name": "Negative cofactor 2 complex subunit beta", "gene_name": "NCB2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40096-1", "protein_name": "Negative cofactor 2 complex subunit alpha", "gene_name": "BUR6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q92317", "url": "https://www.uniprot.org/uniprotkb/Q92317" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9023340", "abstract": "", "glycosylation": [], 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional antagonism between RNA polymerase II holoenzyme and global negative regulator NC2 in vivo.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1997-04-01", "authors": "Gadbois E L, Chao D M, Reese J C, Green M R, Young R A", 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