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Cell Biol.", "date": "1996", "authors": "Spang A, Geissler S, Grein K, Schiebel E", "reference": { "type": "PubMed", "id": "8707827", "url": "https://pubmed.ncbi.nlm.nih.gov/8707827" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53378-1", "protein_name": "Tubulin gamma chain", "gene_name": "TUB4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53378", "url": "https://www.uniprot.org/uniprotkb/P53378" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8707827", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Catalytic and DNA binding properties of the ogg1 protein of Saccharomyces cerevisiae: comparison between the wild type and the K241R and K241Q active-site mutant proteins.", "journal": "Biochemistry", "date": "2000-02-22", "authors": "Guibourt N, Castaing B, Van Der Kemp P A, Boiteux S", "reference": { "type": "PubMed", "id": "10677220", "url": "https://pubmed.ncbi.nlm.nih.gov/10677220" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53397-1", "protein_name": "N-glycosylase/DNA lyase", "gene_name": "OGG1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53397", "url": "https://www.uniprot.org/uniprotkb/P53397" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 241, "end_pos": 241, "sequence_org": "K", "sequence_mut": "Q", "comment": "Abolishes both DNA glycosylase and AP lyase activity.", "evidence": [ { "database": "UniProtKB", "id": "P53397", "url": "https://www.uniprot.org/uniprotkb/P53397" }, { "database": "PubMed", "id": "9241232", "url": "https://pubmed.ncbi.nlm.nih.gov/9241232" }, { "database": "PubMed", "id": "10677220", "url": "https://pubmed.ncbi.nlm.nih.gov/10677220" } ], "uniprot_canonical_ac": "P53397-1" }, { "start_pos": 241, "end_pos": 241, "sequence_org": "K", "sequence_mut": "R", "comment": "Diminishes both DNA glycosylase and AP lyase activity.", "evidence": [ { "database": "UniProtKB", "id": "P53397", "url": "https://www.uniprot.org/uniprotkb/P53397" }, { "database": "PubMed", "id": "9241232", "url": "https://pubmed.ncbi.nlm.nih.gov/9241232" }, { "database": "PubMed", "id": "10677220", "url": "https://pubmed.ncbi.nlm.nih.gov/10677220" } ], "uniprot_canonical_ac": "P53397-1" } ], "record_id": "pubmed.10677220", "abstract": "", 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Natl. Acad. Sci. U.S.A.", "date": "1996", "authors": "van der Kemp P A, Thomas D, Barbey R, de Oliveira R, Boiteux S", "reference": { "type": "PubMed", "id": "8643552", "url": "https://pubmed.ncbi.nlm.nih.gov/8643552" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53397-1", "protein_name": "N-glycosylase/DNA lyase", "gene_name": "OGG1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53397", "url": "https://www.uniprot.org/uniprotkb/P53397" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8643552", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Ogg1 protein of Saccharomyces cerevisiae: a 7,8-dihydro-8-oxoguanine DNA glycosylase/AP lyase whose lysine 241 is a critical residue for catalytic activity.", "journal": "Nucleic acids research", "date": "1997", "authors": "Girard PM, Guibourt N, Boiteux S", "reference": { "type": "PubMed", "id": "9241232", "url": "https://pubmed.ncbi.nlm.nih.gov/9241232" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53397-1", "protein_name": "N-glycosylase/DNA lyase", "gene_name": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multistep assembly of the protein import channel of the mitochondrial outer membrane.", "journal": "Nature structural biology", "date": "2001-04", "authors": "Model K, Meisinger C, Prinz T, Wiedemann N, Truscott K N, Pfanner N, Ryan M T", "reference": { "type": "PubMed", "id": "11276259", "url": "https://pubmed.ncbi.nlm.nih.gov/11276259" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53507-1", "protein_name": "Mitochondrial import receptor subunit TOM7", "gene_name": "TOM7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33448-1", "protein_name": "Mitochondrial import receptor subunit TOM6", "gene_name": "TOM6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P49334-1", "protein_name": "Mitochondrial import receptor subunit TOM22", "gene_name": "TOM22", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53507", "url": "https://www.uniprot.org/uniprotkb/P53507" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11276259", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53507", "url": "https://www.uniprot.org/uniprotkb/P53507" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8701611", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 19 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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Cell. Biol.", "date": "1998", "authors": "Dekker P J, Ryan M T, Brix J, M\u00fcller H, H\u00f6nlinger A, Pfanner N", "reference": { "type": "PubMed", "id": "9774667", "url": "https://pubmed.ncbi.nlm.nih.gov/9774667" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53507-1", "protein_name": "Mitochondrial import receptor subunit TOM7", "gene_name": "TOM7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33448-1", "protein_name": "Mitochondrial import receptor subunit TOM6", "gene_name": "TOM6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35180-1", "protein_name": "Mitochondrial import receptor subunit TOM20", "gene_name": "TOM20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P80967-1", "protein_name": "Mitochondrial import receptor subunit TOM5", "gene_name": "TOM5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P07213-1", "protein_name": "Mitochondrial import receptor subunit TOM70", "gene_name": "TOM70", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23644-1", "protein_name": "Mitochondrial import receptor subunit TOM40", "gene_name": "TOM40", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P49334-1", "protein_name": "Mitochondrial import receptor subunit TOM22", "gene_name": "TOM22", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53507", "url": "https://www.uniprot.org/uniprotkb/P53507" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9774667", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ssu72 is a phosphatase essential for transcription termination of snoRNAs and specific mRNAs in yeast.", "journal": "EMBO J.", "date": "2003", "authors": "Ganem Carine, Devaux Fr\u00e9d\u00e9ric, Torchet Claire, Jacq Claude, Quevillon-Cheruel Sophie, Labesse Gilles, Facca C\u00e9line, Faye G\u00e9rard", "reference": { "type": "PubMed", "id": "12660165", "url": "https://pubmed.ncbi.nlm.nih.gov/12660165" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53538-1", "protein_name": "RNA polymerase II subunit A 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3'-ends.", "journal": "J. Biol. Chem.", "date": "2003", "authors": "Nedea Eduard, He Xiaoyuan, Kim Minkyu, Pootoolal Jeff, Zhong Guoqing, Canadien Veronica, Hughes Timothy, Buratowski Stephen, Moore Claire L, Greenblatt Jack", "reference": { "type": "PubMed", "id": "12819204", "url": "https://pubmed.ncbi.nlm.nih.gov/12819204" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53538-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "SSU72", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06102-1", "protein_name": "mRNA 3'-end-processing protein YTH1", "gene_name": "YTH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29468-1", "protein_name": "Poly(A) polymerase", "gene_name": "PAP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35728-1", "protein_name": "Protein MPE1", "gene_name": "MPE1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36104-1", "protein_name": "COMPASS component SWD2", 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Cell", "date": "2004", "authors": "Krishnamurthy S, He X, Reyes-Reyes M, Moore C, Hampsey M", "reference": { "type": "PubMed", "id": "15125841", "url": "https://pubmed.ncbi.nlm.nih.gov/15125841" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53538-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "SSU72", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53538", "url": "https://www.uniprot.org/uniprotkb/P53538" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15125841", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Synthetic enhancement of a TFIIB defect by a mutation in SSU72, an essential yeast gene encoding a novel protein that affects transcription start site selection in vivo.", "journal": "Mol. Cell. Biol.", "date": "1996", "authors": "Sun Z W, Hampsey M", "reference": { "type": "PubMed", "id": "8657130", "url": "https://pubmed.ncbi.nlm.nih.gov/8657130" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53538-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "SSU72", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53538", "url": "https://www.uniprot.org/uniprotkb/P53538" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8657130", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Complementation of the yeast deletion mutant DeltaNCE103 by members of the beta class of carbonic anhydrases is dependent on carbonic anhydrase activity rather than on antioxidant activity.", "journal": "The Biochemical journal", "date": "2004-05-01", "authors": "Clark Daniel, Rowlett Roger S, Coleman John R, Klessig Daniel F", "reference": { "type": "PubMed", "id": "15096093", "url": "https://pubmed.ncbi.nlm.nih.gov/15096093" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53615-1", "protein_name": "Carbonic anhydrase", "gene_name": "NCE103", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53615", "url": "https://www.uniprot.org/uniprotkb/P53615" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to high carbon dioxide concentrations.", "journal": "FEMS Yeast Res.", "date": "2005", "authors": "Aguilera Jaime, Petit Thomas, de Winde Johannes H, Pronk Jack T", "reference": { "type": "PubMed", "id": "15780657", "url": "https://pubmed.ncbi.nlm.nih.gov/15780657" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53615-1", "protein_name": "Carbonic anhydrase", "gene_name": "NCE103", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53615", "url": "https://www.uniprot.org/uniprotkb/P53615" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15780657", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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Inhibition of the beta-class enzyme from the yeast Saccharomyces cerevisiae with anions.", "journal": "Bioorganic & medicinal chemistry letters", "date": "2008-12-15", "authors": "Isik Semra, Kockar Feray, Arslan Oktay, Guler Ozen Ozensoy, Innocenti Alessio, Supuran Claudiu T", "reference": { "type": "PubMed", "id": "18993072", "url": "https://pubmed.ncbi.nlm.nih.gov/18993072" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53615-1", "protein_name": "Carbonic anhydrase", "gene_name": "NCE103", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53615", "url": "https://www.uniprot.org/uniprotkb/P53615" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.18993072", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural insights into the substrate tunnel of Saccharomyces cerevisiae carbonic anhydrase Nce103.", "journal": "BMC Struct. Biol.", "date": "2009", "authors": "Teng Yan-Bin, Jiang Yong-Liang, He Yong-Xing, He Wei-Wei, Lian Fu-Ming, Chen Yuxing, Zhou Cong-Zhao", "reference": { "type": "PubMed", "id": "19852838", "url": "https://pubmed.ncbi.nlm.nih.gov/19852838" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53615-1", "protein_name": "Carbonic anhydrase", "gene_name": "NCE103", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53615", "url": "https://www.uniprot.org/uniprotkb/P53615" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.19852838", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A new pathway for protein export in Saccharomyces cerevisiae.", "journal": "J. Cell Biol.", "date": "1996", "authors": "Cleves A E, Cooper D N, Barondes S H, Kelly R B", "reference": { "type": "PubMed", "id": "8655575", "url": "https://pubmed.ncbi.nlm.nih.gov/8655575" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53615-1", "protein_name": "Carbonic anhydrase", "gene_name": "NCE103", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02820-1", "protein_name": "Non-classical export protein 1", "gene_name": "NCE101", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12207-1", "protein_name": "Non-classical export protein 2", "gene_name": "NCE102", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53615", "url": "https://www.uniprot.org/uniprotkb/P53615" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8655575", 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Natl. Acad. Sci. U.S.A.", "date": "2007", "authors": "Juneau Kara, Palm Curtis, Miranda Molly, Davis Ronald W", "reference": { "type": "PubMed", "id": "17244705", "url": "https://pubmed.ncbi.nlm.nih.gov/17244705" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53616-1", "protein_name": "Probable secreted beta-glucosidase SUN4", "gene_name": "SUN4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03705-1", "protein_name": "EKC/KEOPS complex subunit CGI121", "gene_name": "CGI121", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36060-1", "protein_name": "NADH-cytochrome b5 reductase 2", "gene_name": "MCR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06537-1", "protein_name": "Uncharacterized protein YPR153W", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07532-1", "protein_name": "RNA polymerase II nuclear localization protein IWR1", "gene_name": "IWR1", "tax_name": "Baker's yeast" }, { 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Natl. Acad. Sci. U.S.A.", "date": "2000", "authors": "Smith J S, Brachmann C B, Celic I, Kenna M A, Muhammad S, Starai V J, Avalos J L, Escalante-Semerena J C, Grubmeyer C, Wolberger C, Boeke J D", "reference": { "type": "PubMed", "id": "10841563", "url": "https://pubmed.ncbi.nlm.nih.gov/10841563" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53685-1", "protein_name": "NAD-dependent protein deacetylase HST1", "gene_name": "HST1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53687-1", "protein_name": "NAD-dependent histone deacetylase HST3", "gene_name": "HST3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53688-1", "protein_name": "NAD-dependent histone deacetylase HST4", "gene_name": "HST4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53685", "url": "https://www.uniprot.org/uniprotkb/P53685" } ], "common_name": "Baker's yeast", 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of the sporulation gene program.", "journal": "Genes Dev.", "date": "2001", "authors": "Pijnappel W W, Schaft D, Roguev A, Shevchenko A, Tekotte H, Wilm M, Rigaut G, S\u00e9raphin B, Aasland R, Stewart A F", "reference": { "type": "PubMed", "id": "11711434", "url": "https://pubmed.ncbi.nlm.nih.gov/11711434" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53685-1", "protein_name": "NAD-dependent protein deacetylase HST1", "gene_name": "HST1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38262-1", "protein_name": "SIR4-interacting protein SIF2", "gene_name": "SIF2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40480-1", "protein_name": "Protein HOS4", "gene_name": "HOS4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P14832-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase", "gene_name": "CPR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25357-1", "protein_name": "Probable DNA-binding protein 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rfm1, a novel tethering factor required to recruit the hst1 histone deacetylase for repression of middle sporulation genes.", "journal": "Mol. Cell. Biol.", "date": "2003", "authors": "McCord Ron, Pierce Michael, Xie Jianxin, Wonkatal Sandeep, Mickel Carolyn, Vershon Andrew K", "reference": { "type": "PubMed", "id": "12612074", "url": "https://pubmed.ncbi.nlm.nih.gov/12612074" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53685-1", "protein_name": "NAD-dependent protein deacetylase HST1", "gene_name": "HST1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46676-1", "protein_name": "Suppressor of mar1-1 protein", "gene_name": "SUM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47055-1", "protein_name": "Outer spore wall protein 4", "gene_name": "LOH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12192-1", "protein_name": "Repression factor of MSEs protein 1", "gene_name": "RFM1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53685", "url": 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biosynthesis and cellular NAD+ levels in Saccharomyces cerevisiae.", "journal": "Molecular and cellular biology", "date": "2003-10", "authors": "Bedalov Antonio, Hirao Maki, Posakony Jeffrey, Nelson Melisa, Simon Julian A", "reference": { "type": "PubMed", "id": "12972620", "url": "https://pubmed.ncbi.nlm.nih.gov/12972620" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53685-1", "protein_name": "NAD-dependent protein deacetylase HST1", "gene_name": "HST1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P47125-1", "protein_name": "Indoleamine 2,3-dioxygenase", "gene_name": "BNA2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53685", "url": "https://www.uniprot.org/uniprotkb/P53685" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": 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E E, Pillus L, Boeke J D", "reference": { "type": "PubMed", "id": "7498786", "url": "https://pubmed.ncbi.nlm.nih.gov/7498786" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53685-1", "protein_name": "NAD-dependent protein deacetylase HST1", "gene_name": "HST1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53687-1", "protein_name": "NAD-dependent histone deacetylase HST3", "gene_name": "HST3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53688-1", "protein_name": "NAD-dependent histone deacetylase HST4", "gene_name": "HST4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53686-1", "protein_name": "NAD-dependent protein deacetylase HST2", "gene_name": "HST2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53685", "url": "https://www.uniprot.org/uniprotkb/P53685" } ], "common_name": "Baker's yeast", 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Weinstock K G, Strathern J N", "reference": { "type": "PubMed", "id": "8810037", "url": "https://pubmed.ncbi.nlm.nih.gov/8810037" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53685-1", "protein_name": "NAD-dependent protein deacetylase HST1", "gene_name": "HST1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53688-1", "protein_name": "NAD-dependent histone deacetylase HST4", "gene_name": "HST4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53685", "url": "https://www.uniprot.org/uniprotkb/P53685" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8810037", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": 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"uniprot_canonical_ac": "Q08235-1", "protein_name": "Ribosome biogenesis protein BRX1", "gene_name": "BRX1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08236-1", "protein_name": "Target of rapamycin complex 2 subunit AVO1", "gene_name": "AVO1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P81451-1", "protein_name": "ATP synthase subunit K, mitochondrial", "gene_name": "ATP19", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12387-1", "protein_name": "N-terminal acetyltransferase B complex subunit MDM20", "gene_name": "MDM20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08231-1", "protein_name": "Nuclear mRNA export protein THP1", "gene_name": "THP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P19158-1", "protein_name": "Inhibitory regulator protein IRA2", "gene_name": "IRA2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": 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[] } ] }, { "title": "The sirtuins hst3 and Hst4p preserve genome integrity by controlling histone h3 lysine 56 deacetylation.", "journal": "Current biology : CB", "date": "2006-07-11", "authors": "Celic Ivana, Masumoto Hiroshi, Griffith Wendell P, Meluh Pamela, Cotter Robert J, Boeke Jef D, Verreault Alain", "reference": { "type": "PubMed", "id": "16815704", "url": "https://pubmed.ncbi.nlm.nih.gov/16815704" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53687-1", "protein_name": "NAD-dependent histone deacetylase HST3", "gene_name": "HST3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53688-1", "protein_name": "NAD-dependent histone deacetylase HST4", "gene_name": "HST4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32447-1", "protein_name": "Histone chaperone ASF1", "gene_name": "ASF1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": 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"Taking it off: regulation of H3 K56 acetylation by Hst3 and Hst4.", "journal": "Cell cycle (Georgetown, Tex.)", "date": "2006-11", "authors": "Miller Kyle M, Maas Nancy L, Toczyski David P", "reference": { "type": "PubMed", "id": "17106263", "url": "https://pubmed.ncbi.nlm.nih.gov/17106263" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53687-1", "protein_name": "NAD-dependent histone deacetylase HST3", "gene_name": "HST3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53688-1", "protein_name": "NAD-dependent histone deacetylase HST4", "gene_name": "HST4", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53687", "url": "https://www.uniprot.org/uniprotkb/P53687" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.17106263", "abstract": 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"date": "1996", "authors": "Sen-Gupta M, Lyck R, Fleig U, Niedenthal R K, Hegemann J H", "reference": { "type": "PubMed", "id": "8740425", "url": "https://pubmed.ncbi.nlm.nih.gov/8740425" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53844-1", "protein_name": "Phosphatidylinositol transfer protein PDR17", "gene_name": "PDR17", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P41832-1", "protein_name": "Protein BNI1", "gene_name": "BNI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53841-1", "protein_name": "Bypass of stop codon protein 4", "gene_name": "BSC4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53843-1", "protein_name": "Vacuolar protein sorting-associated protein IST1", "gene_name": "IST1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39104-1", "protein_name": "Phosphatidylinositol 4-kinase PIK1", "gene_name": "PIK1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38971-1", "protein_name": "Basic amino-acid permease", "gene_name": "ALP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32487-1", "protein_name": "Lysine-specific permease", "gene_name": "LYP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53845-1", "protein_name": "Protein transport protein YIF1", "gene_name": "YIF1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P21951-1", "protein_name": "DNA polymerase epsilon catalytic subunit A", "gene_name": "POL2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53844", "url": "https://www.uniprot.org/uniprotkb/P53844" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.8740425", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"uniprot_canonical_ac": "P53855-1", "protein_name": "Autophagy-related protein 2", "gene_name": "ATG2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12271-1", "protein_name": "Polyphosphatidylinositol phosphatase INP53", "gene_name": "INP53", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53855", "url": "https://www.uniprot.org/uniprotkb/P53855" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10029994", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Apg2 is a novel protein required for the cytoplasm to vacuole targeting, autophagy, and pexophagy pathways.", "journal": "The Journal of biological chemistry", "date": "2001-08-10", "authors": "Wang C W, Kim J, Huang W P, Abeliovich H, Stromhaug P E, Dunn W A, Klionsky D J", "reference": { "type": "PubMed", "id": "11382760", "url": "https://pubmed.ncbi.nlm.nih.gov/11382760" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53855-1", "protein_name": "Autophagy-related protein 2", "gene_name": "ATG2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": 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"Hierarchy of Atg proteins in pre-autophagosomal structure organization.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "2007-02", "authors": "Suzuki Kuninori, Kubota Yuka, Sekito Takayuki, Ohsumi Yoshinori", "reference": { "type": "PubMed", "id": "17295840", "url": "https://pubmed.ncbi.nlm.nih.gov/17295840" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53855-1", "protein_name": "Autophagy-related protein 2", "gene_name": "ATG2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02948-1", "protein_name": "Vacuolar protein sorting-associated protein 30", "gene_name": "VPS30", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06628-1", "protein_name": "Autophagy-related protein 13", "gene_name": "ATG13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07879-1", "protein_name": "Ubiquitin-like-conjugating enzyme ATG10", "gene_name": "ATG10", "tax_name": "Baker's yeast" }, { 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Biol. 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Aut2p and Aut7p, two novel microtubule-associated proteins are essential for delivery of autophagic vesicles to the vacuole.", "journal": "The EMBO journal", "date": "1998-07-01", "authors": "Lang T, Schaeffeler E, Bernreuther D, Bredschneider M, Wolf D H, Thumm M", "reference": { "type": "PubMed", "id": "9649430", "url": "https://pubmed.ncbi.nlm.nih.gov/9649430" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53867-1", "protein_name": "Cysteine protease ATG4", "gene_name": "ATG4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38182-1", "protein_name": "Autophagy-related protein 8", "gene_name": "ATG8", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P53867", "url": "https://www.uniprot.org/uniprotkb/P53867" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9649430", "abstract": "", "glycosylation": [], "mutagenesis": [], 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