[ { "title": "Identification and expression of liver-specific genes after LPS challenge in amphioxus: the hepatic cecum as liver-like organ and `pre-hepatic` acute phase response.", "journal": "Funct. Integr. 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Genet. Genomics", "date": "2022", "authors": "Jin Qingxia, Gao Yuqi, Shuai Shimin, Chen Yayue, Wang Kaiyuan, Chen Jun, Peng Jinrong, Gao Ce", "reference": { "type": "PubMed", "id": "36460297", "url": "https://pubmed.ncbi.nlm.nih.gov/36460297" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q890-1", "protein_name": "Plasminogen", "gene_name": "plg", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z906-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "itih3b.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JLL8-1", "protein_name": "Transthyretin", "gene_name": "ttr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N7V0N1-1", "protein_name": "Serine (Or cysteine) proteinase inhibitor, clade A (Alpha-1 antiproteinase, antitrypsin), member 1, like precursor", "gene_name": "serpina1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE90-1", "protein_name": "Fetuin B precursor", "gene_name": "fetub", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NXE0-1", "protein_name": "Apolipoprotein M", "gene_name": "apom", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q890", "url": "https://www.uniprot.org/uniprotkb/F1Q890" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36460297", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Magnetically powered microwheel thrombolysis of occlusive thrombi in zebrafish.", "journal": "Proc. 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Sci.", "date": "2024", "authors": "Liu Y., Lawrence D.A., Shavit J.A., Osmond M.J., Ku C.J., Disharoon D., Marr D.W.M., Neeves K.B., Pontius M.H.H., Warnock M.", "reference": { "type": "PubMed", "id": "38408253", "url": "https://pubmed.ncbi.nlm.nih.gov/38408253" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q890-1", "protein_name": "Plasminogen", "gene_name": "plg", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q890", "url": "https://www.uniprot.org/uniprotkb/F1Q890" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38408253", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CYP2K6 from zebrafish (Danio rerio): cloning, mapping, developmental/tissue expression, and aflatoxin B1 activation by baculovirus expressed enzyme.", "journal": "Comparative biochemistry and physiology. 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein O-mannosylation is necessary for normal embryonic development in zebrafish.", "journal": "Glycobiology", "date": "2010-09", "authors": "Avsar-Ban Eriko, Ishikawa Hisayoshi, Manya Hiroshi, Watanabe Masatoki, Akiyama Shinichi, Miyake Hideo, Endo Tamao, Tamaru Yutaka", "reference": { "type": "PubMed", "id": "20466645", "url": "https://pubmed.ncbi.nlm.nih.gov/20466645" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q8R9-1", "protein_name": "Protein O-mannosyl-transferase 2", "gene_name": "pomt2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QF89-1", "protein_name": "Protein O-mannosyl-transferase 1", "gene_name": "pomt1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QNB2-1", "protein_name": "Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase", "gene_name": "pomgnt1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q8R9", "url": "https://www.uniprot.org/uniprotkb/F1Q8R9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20466645", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNA 5-Methylcytosine Facilitates the Maternal-to-Zygotic Transition by Preventing Maternal mRNA Decay.", "journal": "Molecular cell", "date": "2019-09-19", "authors": "Yang Ying, Wang Lu, Han Xiao, Yang Wen-Lan, Zhang Mengmeng, Ma Hai-Li, Sun Bao-Fa, Li Ang, Xia Jun, Chen Jing, Heng Jian, Wu Baixing, Chen Yu-Sheng, Xu Jia-Wei, Yang Xin, Yao Huan, Sun Jiawei, Lyu Cong, Wang Hai-Lin, Huang Ying, Sun Ying-Pu, Zhao Yong-Liang, Meng Anming, Ma Jinbiao, Liu Feng, Yang Yun-Gui", "reference": { "type": "PubMed", "id": "31399345", "url": "https://pubmed.ncbi.nlm.nih.gov/31399345" }, 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binding to C5-methylcytosine (m5C)-containing mRNAs.", "evidence": [ { "database": "UniProtKB", "id": "B5DE31", "url": "https://www.uniprot.org/uniprotkb/B5DE31" }, { "database": "PubMed", "id": "31399345", "url": "https://pubmed.ncbi.nlm.nih.gov/31399345" } ], "uniprot_canonical_ac": "B5DE31-1" }, { "start_pos": 45, "end_pos": 45, "sequence_org": "W", "sequence_mut": "F", "comment": "Decreased binding to C5-methylcytosine (m5C)-containing mRNAs. Decreased ability to discriminate between m5C-containing and unmethylated mRNAs.", "evidence": [ { "database": "UniProtKB", "id": "B5DE31", "url": "https://www.uniprot.org/uniprotkb/B5DE31" }, { "database": "PubMed", "id": "31399345", "url": "https://pubmed.ncbi.nlm.nih.gov/31399345" } ], "uniprot_canonical_ac": "B5DE31-1" } ], "record_id": "pubmed.31399345", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Removal of pomt1 in zebrafish leads to loss of \u03b1-dystroglycan glycosylation and dystroglycanopathy phenotypes.", "journal": "Human molecular genetics", "date": "2024-04-08", "authors": "Karas Brittany F, Terez Kristin R, Mowla Shorbon, Battula Namarata, Flannery Kyle P, Gural Brian M, Aboussleman Grace, Mubin Numa, Manzini M Chiara", "reference": { "type": "PubMed", "id": "38272461", "url": "https://pubmed.ncbi.nlm.nih.gov/38272461" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QF89-1", "protein_name": "Protein O-mannosyl-transferase 1", "gene_name": "pomt1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QF89", "url": "https://www.uniprot.org/uniprotkb/F1QF89" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and Expression Analysis of the Complete Family of Zebrafish pkd Genes.", "journal": "Front. Cell Dev. Biol.", "date": "2017", "authors": "England Samantha J, Campbell Paul C, Banerjee Santanu, Swanson Annika J, Lewis Katharine E", "reference": { "type": "PubMed", "id": "28271061", "url": "https://pubmed.ncbi.nlm.nih.gov/28271061" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QFU9-1", "protein_name": "Dipeptidase", "gene_name": "dpep1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QEL7-1", "protein_name": "Cadherin-15 precursor", "gene_name": "cdh15", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PFG6-1", "protein_name": "1.13.11.63; Beta,beta-carotene 15,15'-dioxygenase", "gene_name": "bco1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3H9-1", "protein_name": "Switch-associated protein 70", "gene_name": "swap70a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QLZ5-1", "protein_name": "Zinc finger BED domain-containing protein isoform 1", "gene_name": "LOC108179061; sinhcafl", "tax_name": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of D-aminoacyl-tRNA deacylase beyond chiral proofreading as a cellular defense against glycine mischarging by AlaRS.", "journal": "eLife", "date": "2017-03-31", "authors": "Pawar Komal Ishwar, Suma Katta, Seenivasan Ayshwarya, Kuncha Santosh Kumar, Routh Satya Brata, Kruparani Shobha P, Sankaranarayanan Rajan", "reference": { "type": "PubMed", "id": "28362257", "url": "https://pubmed.ncbi.nlm.nih.gov/28362257" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QGC8-1", "protein_name": "D-aminoacyl-tRNA deacylase 1", "gene_name": "dtd1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9VGP0-1", "protein_name": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dhrs3a regulates retinoic acid biosynthesis through a feedback inhibition mechanism.", "journal": "Dev. Biol.", "date": "2010", "authors": "Feng L, Hernandez R E, Waxman J S, Yelon D, Moens C B", "reference": { "type": "PubMed", "id": "19874812", "url": "https://pubmed.ncbi.nlm.nih.gov/19874812" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QGU0-1", "protein_name": "Glycerol-3-phosphate phosphatase", "gene_name": "pgp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A140LG17-1", "protein_name": "TSC22 domain family protein 3", "gene_name": "tsc22d3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9W7R4-1", "protein_name": "Teneurin-3", "gene_name": "tenm3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IVH6-1", "protein_name": "2.4.2.30; Protein mono-ADP-ribosyltransferase TIPARP", "gene_name": "tiparp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S5W3-1", "protein_name": "SPRY domain-containing SOCS box protein 4a", "gene_name": "spsb4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NVK8-1", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ablation of Mto1 in zebrafish exhibited hypertrophic cardiomyopathy manifested by mitochondrion RNA maturation deficiency.", "journal": "Nucleic Acids Res.", "date": "2021", "authors": "Zhang Qinghai, He Xiao, Yao Shihao, Lin Tianxiang, Zhang Luwen, Chen Danni, Chen Chao, Yang Qingxian, Li Feng, Zhu Yi-Min, Guan Min-Xin", "reference": { "type": "PubMed", "id": "33836087", "url": "https://pubmed.ncbi.nlm.nih.gov/33836087" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QGU0-1", "protein_name": "Glycerol-3-phosphate phosphatase", "gene_name": "pgp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P3D4-1", "protein_name": "pyridoxal 5'-phosphate synthase", "gene_name": "pnpo", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QIR6-1", "protein_name": "Myocardin related transcription factor Ab 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ustilaginoidin D induces hepatotoxicity and behaviour aberrations in zebrafish larvae.", "journal": "Toxicology", "date": "2021", "authors": "Wang Bo, Liu Ling, Li Yuejiao, Zou Jiaying, Li Dayong, Zhao Dan, Li Wei, Sun Wenxian", "reference": { "type": "PubMed", "id": "33872729", "url": "https://pubmed.ncbi.nlm.nih.gov/33872729" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QGU0-1", "protein_name": "Glycerol-3-phosphate phosphatase", "gene_name": "pgp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F2Y6-1", "protein_name": "P-type phospholipid transporter", "gene_name": "abca1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JMA7-1", "protein_name": "UDP-glucuronosyltransferase", "gene_name": "ugt2a4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NX95-1", "protein_name": 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J. Med. Genet. 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Mol. Evol.", "date": "2004", "authors": "Danchin Etienne G J, Pontarotti Pierre", "reference": { "type": "PubMed", "id": "15693615", "url": "https://pubmed.ncbi.nlm.nih.gov/15693615" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QK82-1", "protein_name": "Kinesin-like protein KIF11", "gene_name": "kif11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13ABV2-1", "protein_name": "LIM domain-binding protein 3a isoform 2", "gene_name": "ldb3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PIC7-1", "protein_name": "1.14.14.19; Steroid 17-alpha-hydroxylase/17,20 lyase", "gene_name": "cyp17a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T3B5-1", "protein_name": "Disks large homolog 5a isoform X1", "gene_name": "dlg5a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N2A7-1", "protein_name": "receptor protein serine/threonine kinase", "gene_name": "bmpr1ab", "tax_name": "Zebrafish" }, { 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Dyn.", "date": "2010", "authors": "Barresi Michael J F, Burton Sean, Dipietrantonio Kristina, Amsterdam Adam, Hopkins Nancy, Karlstrom Rolf O", "reference": { "type": "PubMed", "id": "20806318", "url": "https://pubmed.ncbi.nlm.nih.gov/20806318" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QK82-1", "protein_name": "Kinesin-like protein KIF11", "gene_name": "kif11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NYD4-1", "protein_name": "Protein MAK16 homolog", "gene_name": "mak16", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QK82", "url": "https://www.uniprot.org/uniprotkb/F1QK82" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20806318", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Biol.", "date": "2014", "authors": "Johnson Kimberly, Moriarty Chelsea, Tania Nessy, Ortman Alissa, DiPietrantonio Kristina, Edens Brittany, Eisenman Jean, Ok Deborah, Krikorian Sarah, Barragan Jessica, Gol\u00e9 Christophe, Barresi Michael J F", "reference": { "type": "PubMed", "id": "24370453", "url": "https://pubmed.ncbi.nlm.nih.gov/24370453" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QK82-1", "protein_name": "Kinesin-like protein KIF11", "gene_name": "kif11", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QK82", "url": "https://www.uniprot.org/uniprotkb/F1QK82" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24370453", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Kinesin-5 Eg5 is essential for spindle assembly, chromosome stability and organogenesis in development.", "journal": "Cell. Death. Discov.", "date": "2022", "authors": "Yu Wen-Xin, Li Yu-Kun, Xu Meng-Fei, Xu Chen-Jie, Chen Jie, Wei Ya-Lan, She Zhen-Yu", "reference": { "type": "PubMed", "id": "36513626", "url": "https://pubmed.ncbi.nlm.nih.gov/36513626" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QK82-1", "protein_name": "Kinesin-like protein KIF11", "gene_name": "kif11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N863-1", "protein_name": "Receptor expression-enhancing protein", "gene_name": "reep3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QF80-1", "protein_name": "2.7.4.3; Adenylate kinase 7", "gene_name": "ak7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PGB8-1", "protein_name": "Galactocerebrosidase", "gene_name": "galcb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QK82", "url": "https://www.uniprot.org/uniprotkb/F1QK82" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36513626", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss-of-function of kinesin-5 KIF11 causes microcephaly, chorioretinopathy, and developmental disorders through chromosome instability and cell cycle arrest.", "journal": "Exp. Cell Res.", "date": "2024", "authors": "Zhou Yi, Xu Meng-Fei, Chen Jie, Zhang Jing-Lian, Wang Xin-Yao, Huang Min-Hui, Wei Ya-Lan, She Zhen-Yu", "reference": { "type": "PubMed", "id": "38367657", "url": "https://pubmed.ncbi.nlm.nih.gov/38367657" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QK82-1", "protein_name": "Kinesin-like protein KIF11", "gene_name": "kif11", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QK82", "url": "https://www.uniprot.org/uniprotkb/F1QK82" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38367657", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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U.S.A.", "date": "2004", "authors": "Rawls John F, Samuel Buck S, Gordon Jeffrey I", "reference": { "type": "PubMed", "id": "15070763", "url": "https://pubmed.ncbi.nlm.nih.gov/15070763" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QKH1-1", "protein_name": "Copper transport protein", "gene_name": "slc31a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N295-1", "protein_name": "Glutathione peroxidase", "gene_name": "gpx1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P4H4-1", "protein_name": "1.11.1.7; Eosinophil peroxidase isoform 1 precursor", "gene_name": "mpx", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P7C1-1", "protein_name": "3.4.21.43; Complement C3a.1 precursor", "gene_name": "c3a.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QKH1", "url": "https://www.uniprot.org/uniprotkb/F1QKH1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15070763", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gill membrane remodeling with soft-water acclimation in zebrafish (Danio rerio).", "journal": "Physiol. Genomics", "date": "2007", "authors": "Craig Paul M, Wood Chris M, McClelland Grant B", "reference": { "type": "PubMed", "id": "17299134", "url": "https://pubmed.ncbi.nlm.nih.gov/17299134" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QKH1-1", "protein_name": "Copper transport protein", "gene_name": "slc31a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PBD2-1", "protein_name": "Carbonic anhydrase", "gene_name": "ca2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QKH1", "url": "https://www.uniprot.org/uniprotkb/F1QKH1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17299134", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Exposure to copper nanoparticles causes gill injury and acute lethality in zebrafish (Danio rerio).", "journal": "Environ. Sci. Technol.", "date": "2007", "authors": "Griffitt Robert J, Weil Roxana, Hyndman Kelly A, Denslow Nancy D, Powers Kevin, Taylor David, Barber David S", "reference": { "type": "PubMed", "id": "18186356", "url": "https://pubmed.ncbi.nlm.nih.gov/18186356" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QKH1-1", "protein_name": "Copper transport protein", "gene_name": "slc31a1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QKH1", "url": "https://www.uniprot.org/uniprotkb/F1QKH1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18186356", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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J. Mol. Sci.", "date": "2024", "authors": "Li H., Wang W., Wei X., Li W., Ahmed A., Yin Q., Jing L., Ullah R.", "reference": { "type": "PubMed", "id": "39063039", "url": "https://pubmed.ncbi.nlm.nih.gov/39063039" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QP24-1", "protein_name": "Transcriptional activator Myb", "gene_name": "myb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PI90-1", "protein_name": "Microfibril-associated glycoprotein 4 isoform X1; Microfibril-associated glycoprotein 4 precursor", "gene_name": "mfap4.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QP24", "url": "https://www.uniprot.org/uniprotkb/F1QP24" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39063039", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of Dnajc21 leads to cytopenia and altered nucleotide metabolism in zebrafish.", "journal": "Leukemia", "date": "2024", "authors": "Ketharnathan Sarada, Pokharel Sujata, Prykhozhij Sergey V, Cordeiro-Santanach Anna, Ban Kevin, Dogan Serkan, Hoang Huy-Dung, Liebman Mira F, Leung Elaine, Alain Tommy, Alecu Irina, Bennett Steffany A L, \u010cuperlovi\u0107-Culf Miroslava, Dror Yigal, Berman Jason N", "reference": { "type": "PubMed", "id": "39138265", "url": "https://pubmed.ncbi.nlm.nih.gov/39138265" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QP24-1", "protein_name": "Transcriptional activator Myb", "gene_name": "myb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6P698-1", "protein_name": "Plastin-2", "gene_name": "lcp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8AW41-1", "protein_name": "Transcription factor PU.1b isoform 3", "gene_name": "spi1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P4H4-1", "protein_name": "1.11.1.7; 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(Lond.)", "date": "2014", "authors": "Porteus Cosima S, Abdallah Sara J, Pollack Jacob, Kumai Yusuke, Kwong Raymond W M, Yew Hong M, Milsom William K, Perry Steve F", "reference": { "type": "PubMed", "id": "24756639", "url": "https://pubmed.ncbi.nlm.nih.gov/24756639" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QPF7-1", "protein_name": "Cystathionine gamma-lyase", "gene_name": "cth", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QPF7", "url": "https://www.uniprot.org/uniprotkb/F1QPF7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24756639", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Pharmacother.", "date": "2019", "authors": "Park Ki-Hoon, Kim Seok-Hyung", "reference": { "type": "PubMed", "id": "31387182", "url": "https://pubmed.ncbi.nlm.nih.gov/31387182" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QPF7-1", "protein_name": "Cystathionine gamma-lyase", "gene_name": "cth", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NTA0-1", "protein_name": "Thioredoxin-like protein 1", "gene_name": "txnl1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QPF7", "url": "https://www.uniprot.org/uniprotkb/F1QPF7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31387182", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Ophthalmol. Vis. Sci.", "date": "2009", "authors": "Nuckels Richard J, Ng Anthony, Darland Tristan, Gross Jeffrey M", "reference": { "type": "PubMed", "id": "18836173", "url": "https://pubmed.ncbi.nlm.nih.gov/18836173" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QSP4-1", "protein_name": "V-type proton ATPase proteolipid subunit", "gene_name": "atp6v0ca", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0R0V8-1", "protein_name": "V-type proton ATPase subunit H", "gene_name": "atp6v1h", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2AR67-1", "protein_name": "V-type proton ATPase subunit S1b", "gene_name": "atp6ap1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QSP4", "url": "https://www.uniprot.org/uniprotkb/F1QSP4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18836173", "abstract": 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Cell Biol.", "date": "2020", "authors": "Levic Daniel S, Ryan Sean, Marjoram Lindsay, Honeycutt Jamie, Bagwell Jennifer, Bagnat Michel", "reference": { "type": "PubMed", "id": "32328632", "url": "https://pubmed.ncbi.nlm.nih.gov/32328632" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QSP4-1", "protein_name": "V-type proton ATPase proteolipid subunit", "gene_name": "atp6v0ca", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A286YA30-1", "protein_name": "Renin receptor", "gene_name": "atp6ap2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2AR67-1", "protein_name": "V-type proton ATPase subunit S1b", "gene_name": "atp6ap1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QSP4", "url": "https://www.uniprot.org/uniprotkb/F1QSP4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32328632", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pannexin 1 ohnologs in the teleost lineage.", "journal": "J. 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[] } ] }, { "title": "Pannexin1 channel proteins in the zebrafish retina have shared and unique properties.", "journal": "PLoS ONE", "date": "2013", "authors": "Kurtenbach Sarah, Prochnow Nora, Kurtenbach Stefan, Klooster Jan, Zoidl Christiane, Dermietzel Rolf, Kamermans Maarten, Zoidl Georg", "reference": { "type": "PubMed", "id": "24194896", "url": "https://pubmed.ncbi.nlm.nih.gov/24194896" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QSR7-1", "protein_name": "Pannexin", "gene_name": "panx1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6P2X6-1", "protein_name": "Gap junction protein", "gene_name": "gjd6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QSR7", "url": "https://www.uniprot.org/uniprotkb/F1QSR7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24194896", 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Mol. 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Pharmacol.", "date": "2019", "authors": "de Marchi F O, Cruz F F, Menezes F P, Kist L W, Bogo M R, Morrone F B", "reference": { "type": "PubMed", "id": "31136852", "url": "https://pubmed.ncbi.nlm.nih.gov/31136852" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QSR7-1", "protein_name": "Pannexin", "gene_name": "panx1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QSR7", "url": "https://www.uniprot.org/uniprotkb/F1QSR7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31136852", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Panx1b Modulates the Luminance Response and Direction of Locomotion in the Zebrafish.", "journal": "Int. 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Psychiatry", "date": "2010", "authors": "Tarabeux Julien, Champagne Nathalie, Brustein Edna, Hamdan Fadi F, Gauthier Julie, Lapointe Mathieu, Maios Claudia, Piton Am\u00e9lie, Spiegelman Dan, Henrion Edouard, , Millet Bruno, Rapoport Judith L, Delisi Lynn E, Joober Ridha, Fathalli Ferid, Fombonne Eric, Mottron Laurent, Forget-Dubois Nadine, Boivin Michel, Michaud Jacques L, Lafreni\u00e8re Ronald G, Drapeau Pierre, Krebs Marie-Odile, Rouleau Guy A", "reference": { "type": "PubMed", "id": "20646681", "url": "https://pubmed.ncbi.nlm.nih.gov/20646681" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QV34-1", "protein_name": "Kinesin-like protein", "gene_name": "kif17", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QV34", "url": "https://www.uniprot.org/uniprotkb/F1QV34" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" 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Genet.", "date": "2018", "authors": "Zhang Xiaoli, Jia Shuo, Chen Zhe, Chong Yan Ling, Xie Haibo, Feng Dong, Wu Xiaotong, Song Don Zhu, Roy Sudipto, Zhao Chengtian", "reference": { "type": "PubMed", "id": "30420648", "url": "https://pubmed.ncbi.nlm.nih.gov/30420648" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QV34-1", "protein_name": "Kinesin-like protein", "gene_name": "kif17", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H5G1-1", "protein_name": "Urotensin-related peptide 1 isoform X1", "gene_name": "urp1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QV34", "url": "https://www.uniprot.org/uniprotkb/F1QV34" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30420648", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Kif17 phosphorylation regulates photoreceptor outer segment turnover.", "journal": "BMC Cell Biol.", "date": "2018", "authors": "Lewis TR, Kundinger SR, Link BA, Insinna C, Besharse JC", "reference": { "type": "PubMed", "id": "30458707", "url": "https://pubmed.ncbi.nlm.nih.gov/30458707" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QV34-1", "protein_name": "Kinesin-like protein", "gene_name": "kif17", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q99PW8-1", "protein_name": "Kinesin-like protein KIF17", "gene_name": "Kif17", "tax_name": "Mouse" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QV34", "url": "https://www.uniprot.org/uniprotkb/F1QV34" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio 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Biol.", "date": "2020", "authors": "Kozak Eva L, Palit Subarna, Miranda-Rodr\u00edguez Jer\u00f3nimo R, Janjic Aleksandar, B\u00f6ttcher Anika, Lickert Heiko, Enard Wolfgang, Theis Fabian J, L\u00f3pez-Schier Hern\u00e1n", "reference": { "type": "PubMed", "id": "32109392", "url": "https://pubmed.ncbi.nlm.nih.gov/32109392" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QV34-1", "protein_name": "Kinesin-like protein", "gene_name": "kif17", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WW32-1", "protein_name": "Protein S100", "gene_name": "s100s", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QV34", "url": "https://www.uniprot.org/uniprotkb/F1QV34" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32109392", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biallelic Variants in KIF17 Associated with Microphthalmia and Coloboma Spectrum.", "journal": "Int. 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Sci.", "date": "2021", "authors": "Riva A, Gambadauro A, Dipasquale V, Casto C, Ceravolo MD, Accogli A, Scala M, Ceravolo G, Iacomino M, Zara F, Striano P, Cuppari C, Di Rosa G, Cutrupi MC, Salpietro V, Chimenz R", "reference": { "type": "PubMed", "id": "33922911", "url": "https://pubmed.ncbi.nlm.nih.gov/33922911" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QV34-1", "protein_name": "Kinesin-like protein", "gene_name": "kif17", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9P2E2-1", "protein_name": "Kinesin-like protein KIF17", "gene_name": "KIF17", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QV34", "url": "https://www.uniprot.org/uniprotkb/F1QV34" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33922911", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Bi-allelic variants in METTL5 cause autosomal-recessive intellectual disability and microcephaly.", "journal": "Am. J. Hum. Genet.", "date": "2019", "authors": "Richard Elodie M, Polla Daniel L, Assir Muhammad Zaman, Contreras Minerva, Shahzad Mohsin, Khan Asma A, Razzaq Attia, Akram Javed, Tarar Moazzam N, Blanpied Thomas A, Ahmed Zubair M, Abou Jamra Rami, Wieczorek Dagmar, van Bokhoven Hans, Riazuddin Sheikh, Riazuddin Saima", "reference": { "type": "PubMed", "id": "31564433", "url": "https://pubmed.ncbi.nlm.nih.gov/31564433" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QVR8-1", "protein_name": "rRNA N(6)-adenosine-methyltransferase METTL5", "gene_name": "mettl5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8K1A0-1", "protein_name": "rRNA N(6)-adenosine-methyltransferase METTL5", "gene_name": "Mettl5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NRN9-1", "protein_name": "rRNA N(6)-adenosine-methyltransferase METTL5", "gene_name": "METTL5", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QVR8", "url": "https://www.uniprot.org/uniprotkb/F1QVR8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31564433", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "New reporter zebrafish line unveils heterogeneity among lymphatic endothelial cells during development.", "journal": "Dev. Dyn.", "date": "2021", "authors": "Fr\u00e9taud Maxence, Do Khoa Nam, Houel Armel, Lunazzi Aur\u00e9lie, Boudinot Pierre, Langevin Christelle", "reference": { "type": "PubMed", "id": "33369805", "url": "https://pubmed.ncbi.nlm.nih.gov/33369805" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QW76-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like", "gene_name": "batf", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QW76", "url": "https://www.uniprot.org/uniprotkb/F1QW76" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33369805", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phylogenetic and Expression Analysis of Fos Transcription Factors in Zebrafish.", "journal": "Int. 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Sci.", "date": "2022", "authors": "Kubra Khadizatul, Gaddu Gurveer K, Liongue Clifford, Heidary Somayyeh, Ward Alister C, Dhillon Amardeep S, Basheer Faiza", "reference": { "type": "PubMed", "id": "36077499", "url": "https://pubmed.ncbi.nlm.nih.gov/36077499" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QW76-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like", "gene_name": "batf", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0G2L677-1", "protein_name": "Large ribosomal subunit protein bL33m", "gene_name": "mrpl33", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PM39-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase", "gene_name": "b3gat1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUX7-1", "protein_name": "CLK4-associating serine/arginine rich protein", "gene_name": "clasrp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUX8-1", "protein_name": "3.1.1.53; Sialate O-acetylesterase precursor", "gene_name": "siae", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUX5-1", "protein_name": "Zinc finger protein 296", "gene_name": "znf296", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LWV0-1", "protein_name": "Glutaminyl-peptide cyclotransferase", "gene_name": "qpctla", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAS6-1", "protein_name": "Exosome complex component RRP46", "gene_name": "exosc5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BLA7-1", "protein_name": "Calpain-12 isoform X1", "gene_name": "capn12", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N1Z226-1", "protein_name": "Homeobox protein SIX5", "gene_name": "six5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QW76", "url": "https://www.uniprot.org/uniprotkb/F1QW76" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36077499", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BMP9 mutations cause a vascular-anomaly syndrome with phenotypic overlap with hereditary hemorrhagic telangiectasia.", "journal": "Am. 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"Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores.", "journal": "Proc. 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U.S.A.", "date": "2019", "authors": "Lewis Victor M, Saunders Lauren M, Larson Tracy A, Bain Emily J, Sturiale Samantha L, Gur Dvir, Chowdhury Sarwat, Flynn Jessica D, Allen Michael C, Deheyn Dimitri D, Lee Jennifer C, Simon Julian A, Lippincott-Schwartz Jennifer, Raible David W, Parichy David M", "reference": { "type": "PubMed", "id": "31138706", "url": "https://pubmed.ncbi.nlm.nih.gov/31138706" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R293-1", "protein_name": "Adenylosuccinate lyase", "gene_name": "adsl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JLW8-1", "protein_name": "GMP synthase [glutamine-hydrolyzing]", "gene_name": "gmps", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC36K4V6-1", "protein_name": "G-protein coupled receptor 143", "gene_name": "gpr143", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TZ72-1", "protein_name": "Phosphoribosylformylglycinamidine synthase", "gene_name": "pfas", "tax_name": 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aggressive behavior in zebrafish autism model.", "journal": "Comp. Biochem. Physiol. C Toxicol. 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