[ { "title": "Ascribing novel functions to the sarcomeric protein, myosin binding protein H (MyBPH) in cardiac sarcomere contraction.", "journal": "Experimental cell research", "date": "2015", "authors": "Mouton J, Loos B, Moolman-Smook JC, Kinnear CJ", "reference": { "type": "PubMed", "id": "25449695", "url": "https://pubmed.ncbi.nlm.nih.gov/25449695" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88599-1", "protein_name": "Myosin-binding protein H", "gene_name": "Mybph", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88599", "url": "https://www.uniprot.org/uniprotkb/O88599" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.25449695", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MYBPH inhibits vascular smooth muscle cell migration and attenuates neointimal hyperplasia in a rat carotid balloon-injury model.", "journal": "Experimental cell research", "date": "2017", "authors": "Zhu T, He Y, Yang J, Fu W, Xu X, Si Y", "reference": { "type": "PubMed", "id": "28800959", "url": "https://pubmed.ncbi.nlm.nih.gov/28800959" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88599-1", "protein_name": "Myosin-binding protein H", "gene_name": "Mybph", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88599", "url": "https://www.uniprot.org/uniprotkb/O88599" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.28800959", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nucleotide and deduced amino acid sequences of rat myosin binding protein H (MyBP-H).", "journal": "Arch. Pharm. Res.", "date": "1998", "authors": "Jung J, Oh J, Lee K", "reference": { "type": "PubMed", "id": "9868543", "url": "https://pubmed.ncbi.nlm.nih.gov/9868543" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88599-1", "protein_name": "Myosin-binding protein H", "gene_name": "Mybph", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88599", "url": "https://www.uniprot.org/uniprotkb/O88599" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.9868543", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "O-linked N-acetylglucosaminylation is involved in the Ca2+ activation properties of rat skeletal muscle.", "journal": "The Journal of biological chemistry", "date": "2007", "authors": "Hedou J, Cieniewski-Bernard C, Leroy Y, Michalski JC, Mounier Y, Bastide B", "reference": { "type": "PubMed", "id": "17289664", "url": "https://pubmed.ncbi.nlm.nih.gov/17289664" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P02600-1", "protein_name": "Myosin light chain 1/3, skeletal muscle isoform", "gene_name": "Myl1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P68136-1", "protein_name": "Actin, alpha skeletal muscle", "gene_name": "Acta1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P12847-1", "protein_name": "Myosin-3", "gene_name": "Myh3", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P02600", "url": "https://www.uniprot.org/uniprotkb/P02600" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "17289664", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17289664" }, { "id": "P02600", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P02600" } ], "filter_code": "000000000000000000000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P02600-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "17289664", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17289664" }, { "id": "P68136", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P68136" }, { "id": "23110217", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23110217" } ], "filter_code": "000000000000000000000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P68136-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "17289664", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17289664" }, { "id": "P12847", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P12847" } ], "filter_code": "000000000000000000000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P12847-1" } ], "record_id": "pubmed.17289664", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "glytoucan_ac" ] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 3 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 3 }, { "field": "fuzzy_o_linked_sites", "count": 3 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 3 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 3 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 3 }, { "field": "fuzzy_o_linked_sites", "count": 3 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 3 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The roles of myosin ATPase activity and myosin light chain relative content in the slowing of type IIB fibers with hindlimb unweighting in rats.", "journal": "American journal of physiology. Cell physiology", "date": "2007", "authors": "Zhong S, Thompson LV", "reference": { "type": "PubMed", "id": "17494635", "url": "https://pubmed.ncbi.nlm.nih.gov/17494635" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P02600-1", "protein_name": "Myosin light chain 1/3, skeletal muscle isoform", "gene_name": "Myl1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P16409-1", "protein_name": "Myosin light chain 3", "gene_name": "Myl3", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P02600", "url": "https://www.uniprot.org/uniprotkb/P02600" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.17494635", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ischemia induced peroxynitrite dependent modifications of cardiomyocyte MLC1 increases its degradation by MMP-2 leading to contractile dysfunction.", "journal": "Journal of cellular and molecular medicine", "date": "2011", "authors": "Polewicz D, Cadete VJ, Doroszko A, Hunter BE, Sawicka J, Szczesna-Cordary D, Light PE, Sawicki G", "reference": { "type": "PubMed", "id": "20518849", "url": "https://pubmed.ncbi.nlm.nih.gov/20518849" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P02600-1", "protein_name": "Myosin light chain 1/3, skeletal muscle isoform", "gene_name": "Myl1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P02600", "url": "https://www.uniprot.org/uniprotkb/P02600" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.20518849", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Myosin light-chain 1 and 3 gene has two structurally distinct and differentially regulated promoters evolving at different rates.", "journal": "Mol. Cell. Biol.", "date": "1985", "authors": "Strehler EE, Periasamy M, Strehler-Page MA, Nadal-Ginard B", "reference": { "type": "PubMed", "id": "3018505", "url": "https://pubmed.ncbi.nlm.nih.gov/3018505" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P02600-1", "protein_name": "Myosin light chain 1/3, skeletal muscle isoform", "gene_name": "Myl1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P02600", "url": "https://www.uniprot.org/uniprotkb/P02600" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.3018505", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Increasing myosin light chain 3f (MLC3f) protects against a decline in contractile velocity.", "journal": "PloS one", "date": "2019", "authors": "Kim JH, Graber TG, Liu H, Asakura A, Thompson LV", "reference": { "type": "PubMed", "id": "30964931", "url": "https://pubmed.ncbi.nlm.nih.gov/30964931" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P02600-1", "protein_name": "Myosin light chain 1/3, skeletal muscle isoform", "gene_name": "Myl1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P02600", "url": "https://www.uniprot.org/uniprotkb/P02600" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.30964931", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Fast skeletal muscle myosin light chains 1 and 3 are produced from a single gene by a combined process of differential RNA transcription and splicing.", "journal": "J. Biol. Chem.", "date": "1984", "authors": "Periasamy M, Strehler EE, Garfinkel LI, Gubits RM, Ruiz-Opazo N, Nadal-Ginard B", "reference": { "type": "PubMed", "id": "6092382", "url": "https://pubmed.ncbi.nlm.nih.gov/6092382" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P02600-1", "protein_name": "Myosin light chain 1/3, skeletal muscle isoform", "gene_name": "Myl1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P02600", "url": "https://www.uniprot.org/uniprotkb/P02600" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.6092382", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A K52Q substitution in the globular domain of histone H1t modulates its nucleosome binding properties.", "journal": "FEBS letters", "date": "2006", "authors": "Ramesh S, Bharath MM, Chandra NR, Rao MR", "reference": { "type": "PubMed", "id": "17052712", "url": "https://pubmed.ncbi.nlm.nih.gov/17052712" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P06349", "url": "https://www.uniprot.org/uniprotkb/P06349" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "mutagenesis": [ { "start_pos": 54, "end_pos": 54, "sequence_org": "Q", "sequence_mut": "K", "comment": "Increased affinity for DNA.", "evidence": [ { "database": "UniProtKB", "id": "P06349", "url": "https://www.uniprot.org/uniprotkb/P06349" }, { "database": "PubMed", "id": "17052712", "url": "https://pubmed.ncbi.nlm.nih.gov/17052712" } ], "uniprot_canonical_ac": "P06349-1" } ], "record_id": "pubmed.17052712", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein-DNA interactions within the rat histone H4t promoter.", "journal": "J. Biol. Chem.", "date": "1991", "authors": "Wolfe SA, Grimes SR", "reference": { "type": "PubMed", "id": "1706721", "url": "https://pubmed.ncbi.nlm.nih.gov/1706721" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P62804-1", "protein_name": "Histone H4", "gene_name": "H4c16; H4c2; Hist1h4m", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P06349", "url": "https://www.uniprot.org/uniprotkb/P06349" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.1706721", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Binding of RFX2 and NF-Y to the testis-specific histone H1t promoter may be required for transcriptional activation in primary spermatocytes.", "journal": "Journal of cellular biochemistry", "date": "2008", "authors": "VanWert JM, Wolfe SA, Grimes SR", "reference": { "type": "PubMed", "id": "18247329", "url": "https://pubmed.ncbi.nlm.nih.gov/18247329" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_name": "Rat" }, { "uniprot_canonical_ac": "B2GV50-1", "protein_name": "DNA-binding protein RFX2", "gene_name": "Rfx2", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P06349", "url": "https://www.uniprot.org/uniprotkb/P06349" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.18247329", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Testis-specific linker histone H1t is multiply phosphorylated during spermatogenesis. Identification of phosphorylation sites.", "journal": "The Journal of biological chemistry", "date": "2009", "authors": "Sarg B, Chwatal S, Talasz H, Lindner HH", "reference": { "type": "PubMed", "id": "19043117", "url": "https://pubmed.ncbi.nlm.nih.gov/19043117" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q07133-1", "protein_name": "Histone H1t", "gene_name": "H1-6; H1f6", "tax_name": "Mouse" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P06349", "url": "https://www.uniprot.org/uniprotkb/P06349" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 141, "end_pos": 141, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P06349", "url": "https://www.uniprot.org/uniprotkb/P06349" }, { "database": "PubMed", "id": "19043117", "url": "https://pubmed.ncbi.nlm.nih.gov/19043117" }, { "database": "iPTMnet", "id": "P06349", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P06349" } ], "site_lbl": "Ser141", "uniprot_canonical_ac": "P06349-1" }, { "start_pos": 156, "end_pos": 156, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P06349", "url": "https://www.uniprot.org/uniprotkb/P06349" }, { "database": "PubMed", "id": "19043117", "url": "https://pubmed.ncbi.nlm.nih.gov/19043117" }, { "database": "iPTMnet", "id": "P06349", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P06349" } ], "site_lbl": "Thr156", "uniprot_canonical_ac": "P06349-1" }, { "start_pos": 178, "end_pos": 178, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P06349", "url": "https://www.uniprot.org/uniprotkb/P06349" }, { "database": "PubMed", "id": "19043117", "url": "https://pubmed.ncbi.nlm.nih.gov/19043117" }, { "database": "iPTMnet", "id": "P06349", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P06349" } ], "site_lbl": "Ser178", "uniprot_canonical_ac": "P06349-1" }, { "start_pos": 187, "end_pos": 187, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P06349", "url": "https://www.uniprot.org/uniprotkb/P06349" }, { "database": "PubMed", "id": "19043117", "url": "https://pubmed.ncbi.nlm.nih.gov/19043117" }, { "database": "iPTMnet", "id": "P06349", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P06349" } ], "site_lbl": "Ser187", "uniprot_canonical_ac": "P06349-1" }, { "start_pos": 9, "end_pos": 9, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P06349", "url": "https://www.uniprot.org/uniprotkb/P06349" }, { "database": "PubMed", "id": "19043117", "url": "https://pubmed.ncbi.nlm.nih.gov/19043117" }, { "database": "iPTMnet", "id": "P06349", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P06349" } ], "site_lbl": "Ser9", "uniprot_canonical_ac": "P06349-1" }, { "start_pos": 141, "end_pos": 141, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q07133", "url": "https://www.uniprot.org/uniprotkb/Q07133" }, { "database": "PubMed", "id": "19043117", "url": "https://pubmed.ncbi.nlm.nih.gov/19043117" }, { "database": "PubMed", "id": "18698803", "url": "https://pubmed.ncbi.nlm.nih.gov/18698803" }, { "database": "iPTMnet", "id": "Q07133", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q07133" } ], "site_lbl": "Ser141", "uniprot_canonical_ac": "Q07133-1" }, { "start_pos": 156, "end_pos": 156, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q07133", "url": "https://www.uniprot.org/uniprotkb/Q07133" }, { "database": "PubMed", "id": "19043117", "url": "https://pubmed.ncbi.nlm.nih.gov/19043117" }, { "database": "PubMed", "id": "18698803", "url": "https://pubmed.ncbi.nlm.nih.gov/18698803" }, { "database": "iPTMnet", "id": "Q07133", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q07133" } ], "site_lbl": "Thr156", "uniprot_canonical_ac": "Q07133-1" }, { "start_pos": 178, "end_pos": 178, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q07133", "url": "https://www.uniprot.org/uniprotkb/Q07133" }, { "database": "PubMed", "id": "18698803", "url": "https://pubmed.ncbi.nlm.nih.gov/18698803" }, { "database": "PubMed", "id": "19043117", "url": "https://pubmed.ncbi.nlm.nih.gov/19043117" }, { "database": "iPTMnet", "id": "Q07133", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q07133" } ], "site_lbl": "Ser178", "uniprot_canonical_ac": "Q07133-1" }, { "start_pos": 9, "end_pos": 9, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q07133", "url": "https://www.uniprot.org/uniprotkb/Q07133" }, { "database": "PubMed", "id": "19043117", "url": "https://pubmed.ncbi.nlm.nih.gov/19043117" }, { "database": "iPTMnet", "id": "Q07133", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q07133" } ], "site_lbl": "Ser9", "uniprot_canonical_ac": "Q07133-1" } ], "record_id": "pubmed.19043117", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 9 }, { "field": "total_sites", "count": 5 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation of the gene for the testis-specific H1 histone variant H1t.", "journal": "J. Biol. Chem.", "date": "1986", "authors": "Cole K D, Kandala J C, Kistler W S", "reference": { "type": "PubMed", "id": "2423516", "url": "https://pubmed.ncbi.nlm.nih.gov/2423516" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P06349", "url": "https://www.uniprot.org/uniprotkb/P06349" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.2423516", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sequence of the amino terminal half of rat testis-specific histone variant H1t.", "journal": "Biochim. Biophys. Acta", "date": "1986", "authors": "Cole KD, York RG, Kistler WS", "reference": { "type": "PubMed", "id": "3947637", "url": "https://pubmed.ncbi.nlm.nih.gov/3947637" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P06349", "url": "https://www.uniprot.org/uniprotkb/P06349" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.3947637", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The myelin-deficient rat has a single base substitution in the third exon of the myelin proteolipid protein gene.", "journal": "Journal of neurochemistry", "date": "1990", "authors": "Simons R, Riordan JR", "reference": { "type": "PubMed", "id": "1689377", "url": "https://pubmed.ncbi.nlm.nih.gov/1689377" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60203-1", "protein_name": "Myelin proteolipid protein", "gene_name": "Plp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P60203", "url": "https://www.uniprot.org/uniprotkb/P60203" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.1689377", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Single base substitution in codon 74 of the MD rat myelin proteolipid protein gene.", "journal": "Annals of the New York Academy of Sciences", "date": "1990", "authors": "Simons R, Riordan JR", "reference": { "type": "PubMed", "id": "1702593", "url": "https://pubmed.ncbi.nlm.nih.gov/1702593" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60203-1", "protein_name": "Myelin proteolipid protein", "gene_name": "Plp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P60203", "url": "https://www.uniprot.org/uniprotkb/P60203" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.1702593", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning and nucleotide sequence of a cDNA clone coding for rat brain myelin proteolipid.", "journal": "FEBS Lett.", "date": "1985", "authors": "Dautigny A, Alliel P M, d'Auriol L, Pham Dinh D, Nussbaum J L, Galibert F, Joll\u00e8s P", "reference": { "type": "PubMed", "id": "2410294", "url": "https://pubmed.ncbi.nlm.nih.gov/2410294" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60203-1", "protein_name": "Myelin proteolipid protein", "gene_name": "Plp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P60203", "url": "https://www.uniprot.org/uniprotkb/P60203" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.2410294", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nucleotide sequences of two mRNAs for rat brain myelin proteolipid protein.", "journal": "Cell", "date": "1985", "authors": "Milner R J, Lai C, Nave K A, Lenoir D, Ogata J, Sutcliffe J G", "reference": { "type": "PubMed", "id": "2414013", "url": "https://pubmed.ncbi.nlm.nih.gov/2414013" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60203-1", "protein_name": "Myelin proteolipid protein", "gene_name": "Plp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P60203", "url": "https://www.uniprot.org/uniprotkb/P60203" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.2414013", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Topology of proteolipid protein in the myelin membrane of central nervous system. A study using antipeptide antibodies.", "journal": "Biological chemistry Hoppe-Seyler", "date": "1989-02", "authors": "Stoffel W, Subkowski T, Jander S", "reference": { "type": "PubMed", "id": "2468346", "url": "https://pubmed.ncbi.nlm.nih.gov/2468346" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60203-1", "protein_name": "Myelin proteolipid protein", "gene_name": "Plp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P60203", "url": "https://www.uniprot.org/uniprotkb/P60203" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.2468346", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Myelin-deficient rat: a point mutation in exon III (A----C, Thr75----Pro) of the myelin proteolipid protein causes dysmyelination and oligodendrocyte death.", "journal": "The EMBO journal", "date": "1989", "authors": "Boison D, Stoffel W", "reference": { "type": "PubMed", "id": "2479544", "url": "https://pubmed.ncbi.nlm.nih.gov/2479544" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60203-1", "protein_name": "Myelin proteolipid protein", "gene_name": "Plp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P60203", "url": "https://www.uniprot.org/uniprotkb/P60203" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.2479544", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sex differences in myelin-associated protein levels within and density of projections between the orbital frontal cortex and dorsal striatum of adult rats: implications for inhibitory control.", "journal": "Neuroscience", "date": "2015", "authors": "Bayless DW, Daniel JM", "reference": { "type": "PubMed", "id": "26002313", "url": "https://pubmed.ncbi.nlm.nih.gov/26002313" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60203-1", "protein_name": "Myelin proteolipid protein", "gene_name": "Plp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P60203", "url": "https://www.uniprot.org/uniprotkb/P60203" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.26002313", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The expression of PLP/DM-20 mRNA is restricted to the oligodendrocyte-lineage cells in the adult rat spinal cord.", "journal": "Histochemistry and cell biology", "date": "2016", "authors": "Takeda K, Dezawa M, Kitada M", "reference": { "type": "PubMed", "id": "26563642", "url": "https://pubmed.ncbi.nlm.nih.gov/26563642" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60203-1", "protein_name": "Myelin proteolipid protein", "gene_name": "Plp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P60203", "url": "https://www.uniprot.org/uniprotkb/P60203" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.26563642", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Diverse changes in myelin protein expression in rat brain after perinatal methadone exposure.", "journal": "Acta neurobiologiae experimentalis", "date": "2019", "authors": "Oberoi R, Chu T, Mellen N, Jagadapillai R, Ouyang H, Devlin LA, Cai J", "reference": { "type": "PubMed", "id": "31885393", "url": "https://pubmed.ncbi.nlm.nih.gov/31885393" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60203-1", "protein_name": "Myelin proteolipid protein", "gene_name": "Plp1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P02688-1", "protein_name": "Myelin basic protein", "gene_name": "Mbp", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P13233-1", "protein_name": "2',3'-cyclic-nucleotide 3'-phosphodiesterase", "gene_name": "Cnp", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P60203", "url": "https://www.uniprot.org/uniprotkb/P60203" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.31885393", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of core histones acetylation by carcinogenic nickel(II).", "journal": "Molecular and cellular biochemistry", "date": "2005", "authors": "Golebiowski F, Kasprzak KS", "reference": { "type": "PubMed", "id": "16283522", "url": "https://pubmed.ncbi.nlm.nih.gov/16283522" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "ENSRNOG00000064540; ENSRNOG00000068034; H2bc12; H2bc18; H2bc1; H2bc4; H2bc6; H2bcl2; H3c15; Hist1h2bq", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00715-1", "protein_name": "Histone H2B type 1", "gene_name": "", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DRA6-1", "protein_name": "Putative histone H2B type 2-D", "gene_name": "H2BC19P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DN03-1", "protein_name": "Putative histone H2B type 2-C", "gene_name": "H2BC20P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00729", "url": "https://www.uniprot.org/uniprotkb/Q00729" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.16283522", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 19 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mass spectrometry analysis of dynamic post-translational modifications of TH2B during spermatogenesis.", "journal": "Molecular human reproduction", "date": "2009", "authors": "Lu S, Xie YM, Li X, Luo J, Shi XQ, Hong X, Pan YH, Ma X", "reference": { "type": "PubMed", "id": "19346237", "url": "https://pubmed.ncbi.nlm.nih.gov/19346237" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "ENSRNOG00000064540; ENSRNOG00000068034; H2bc12; H2bc18; H2bc1; H2bc4; H2bc6; H2bcl2; H3c15; Hist1h2bq", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00729", "url": "https://www.uniprot.org/uniprotkb/Q00729" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 117, "end_pos": 117, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q00729", "url": "https://www.uniprot.org/uniprotkb/Q00729" }, { "database": "PubMed", "id": "19346237", "url": "https://pubmed.ncbi.nlm.nih.gov/19346237" }, { "database": "iPTMnet", "id": "Q00729", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00729" } ], "site_lbl": "Thr117", "uniprot_canonical_ac": "Q00729-1" } ], "record_id": "pubmed.19346237", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Presence of a bi-directional S phase-specific transcription regulatory element in the promoter shared by testis-specific TH2A and TH2B histone genes.", "journal": "Nucleic Acids Res.", "date": "1991", "authors": "Huh NE, Hwang IW, Lim K, You KH, Chae CB", "reference": { "type": "PubMed", "id": "2011515", "url": "https://pubmed.ncbi.nlm.nih.gov/2011515" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "ENSRNOG00000064540; ENSRNOG00000068034; H2bc12; H2bc18; H2bc1; H2bc4; H2bc6; H2bcl2; H3c15; Hist1h2bq", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00715-1", "protein_name": "Histone H2B type 1", "gene_name": "", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00728-1", "protein_name": "Histone H2A type 4", "gene_name": "", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q64598-1", "protein_name": "Histone H2A type 1-F", "gene_name": "", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00729", "url": "https://www.uniprot.org/uniprotkb/Q00729" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.2011515", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mapping post-translational modifications of mammalian testicular specific histone variant TH2B in tetraploid and haploid germ cells and their implications on the dynamics of nucleosome structure.", "journal": "Journal of proteome research", "date": "2014", "authors": "Pentakota SK, Sandhya S, P Sikarwar A, Chandra N, Satyanarayana Rao MR", "reference": { "type": "PubMed", "id": "25252820", "url": "https://pubmed.ncbi.nlm.nih.gov/25252820" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "ENSRNOG00000064540; ENSRNOG00000068034; H2bc12; H2bc18; H2bc1; H2bc4; H2bc6; H2bcl2; H3c15; Hist1h2bq", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00729", "url": "https://www.uniprot.org/uniprotkb/Q00729" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.25252820", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "S-phase-specific transcription regulatory elements are present in a replication-independent testis-specific H2B histone gene.", "journal": "Mol. Cell. Biol.", "date": "1989", "authors": "Hwang I, Chae CB", "reference": { "type": "PubMed", "id": "2725487", "url": "https://pubmed.ncbi.nlm.nih.gov/2725487" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "ENSRNOG00000064540; ENSRNOG00000068034; H2bc12; H2bc18; H2bc1; H2bc4; H2bc6; H2bcl2; H3c15; Hist1h2bq", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00729", "url": "https://www.uniprot.org/uniprotkb/Q00729" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.2725487", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TH2BS11ph histone mark is enriched in the unsynapsed axes of the XY body and predominantly associates with H3K4me3-containing genomic regions in mammalian spermatocytes.", "journal": "Epigenetics & chromatin", "date": "2019", "authors": "Mahadevan IA, Pentakota S, Roy R, Bhaduri U, Satyanarayana Rao MR", "reference": { "type": "PubMed", "id": "31493790", "url": "https://pubmed.ncbi.nlm.nih.gov/31493790" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "ENSRNOG00000064540; ENSRNOG00000068034; H2bc12; H2bc18; H2bc1; H2bc4; H2bc6; H2bcl2; H3c15; Hist1h2bq", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00729", "url": "https://www.uniprot.org/uniprotkb/Q00729" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.31493790", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning and differential expression of somatic and testis-specific H2B histone genes during rat spermatogenesis.", "journal": "Dev. Biol.", "date": "1987", "authors": "Kim Y J, Hwang I, Tres L L, Kierszenbaum A L, Chae C B", "reference": { "type": "PubMed", "id": "3666307", "url": "https://pubmed.ncbi.nlm.nih.gov/3666307" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "ENSRNOG00000064540; ENSRNOG00000068034; H2bc12; H2bc18; H2bc1; H2bc4; H2bc6; H2bcl2; H3c15; Hist1h2bq", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00715-1", "protein_name": "Histone H2B type 1", "gene_name": "", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00729", "url": "https://www.uniprot.org/uniprotkb/Q00729" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.3666307", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cytotoxic mechanism related to dihydrolipoamide dehydrogenase in Leydig cells exposed to heavy metals.", "journal": "Toxicology", "date": "2015", "authors": "Ji X, Li Z, Chen H, Li J, Tian H, Li Z, Gao X, Xiang Q, Su Z, Huang Y, Zhang Q", "reference": { "type": "PubMed", "id": "25981801", "url": "https://pubmed.ncbi.nlm.nih.gov/25981801" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6P6R2-1", "protein_name": "Dihydrolipoyl dehydrogenase, mitochondrial", "gene_name": "Dld", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6P6R2", "url": "https://www.uniprot.org/uniprotkb/Q6P6R2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.25981801", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Redox imbalance and mitochondrial abnormalities in the diabetic lung.", "journal": "Redox biology", "date": "2017", "authors": "Wu J, Jin Z, Yan LJ", "reference": { "type": "PubMed", "id": "27888691", "url": "https://pubmed.ncbi.nlm.nih.gov/27888691" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6P6R2-1", "protein_name": "Dihydrolipoyl dehydrogenase, mitochondrial", "gene_name": "Dld", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6P6R2", "url": "https://www.uniprot.org/uniprotkb/Q6P6R2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.27888691", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Defective Branched-Chain Amino Acid Catabolism Disrupts Glucose Metabolism and Sensitizes the Heart to Ischemia-Reperfusion Injury.", "journal": "Cell metabolism", "date": "2017", "authors": "Li T, Zhang Z, Kolwicz SC Jr, Abell L, Roe ND, Kim M, Zhou B, Cao Y, Ritterhoff J, Gu H, Raftery D, Sun H, Tian R", "reference": { "type": "PubMed", "id": "28178567", "url": "https://pubmed.ncbi.nlm.nih.gov/28178567" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6P6R2-1", "protein_name": "Dihydrolipoyl dehydrogenase, mitochondrial", "gene_name": "Dld", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P08461-1", "protein_name": "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial", "gene_name": "Dlat", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6P6R2", "url": "https://www.uniprot.org/uniprotkb/Q6P6R2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 292, "start_aa": "Ser", "end_pos": 292, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser292", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/27213235" }, { "id": "Q6P6R2", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6P6R2" }, { "id": "26446791", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26446791" }, { "id": "28178567", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28178567" }, { "id": "34502162", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34502162" }, { "id": "Q6P6R2", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q6P6R2" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "Q6P6R2-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 297, "start_aa": "Ser", "end_pos": 297, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser297", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/27213235" }, { "id": "Q6P6R2", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6P6R2" }, { "id": "26446791", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26446791" }, { "id": "28178567", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28178567" }, { "id": "34502162", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34502162" }, { "id": "Q6P6R2", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q6P6R2" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01010", "uniprot_canonical_ac": "Q6P6R2-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 491, "start_aa": "Ser", "end_pos": 491, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser491", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/27213235" }, { "id": "Q6P6R2", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6P6R2" }, { "id": "26446791", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26446791" }, { "id": "28178567", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28178567" }, { "id": "34502162", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34502162" }, { "id": "Q6P6R2", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q6P6R2" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "Q6P6R2-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 95, "start_aa": "Ser", "end_pos": 95, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser95", "evidence": [ { "id": "27213235", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/27213235" }, { "id": "Q6P6R2", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6P6R2" }, { "id": "26446791", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26446791" }, { "id": "28178567", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28178567" }, { "id": "34502162", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34502162" }, { "id": "Q6P6R2", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q6P6R2" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "Q6P6R2-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 411, "start_aa": "Ser", "end_pos": 411, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser411", "evidence": [ { "id": "18683930", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18683930" }, { "id": "P08461", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P08461" }, { "id": "34502162", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34502162" }, { "id": "27213235", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/27213235" }, { "id": "28178567", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28178567" }, { "id": "26446791", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26446791" }, { "id": "P08461", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P08461" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P08461-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 524, "start_aa": "Ser", "end_pos": 524, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser524", "evidence": [ { "id": "18683930", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18683930" }, { "id": "P08461", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P08461" }, { "id": "34502162", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34502162" }, { "id": "27213235", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/27213235" }, { "id": "28178567", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28178567" }, { "id": "26446791", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26446791" }, { "id": "P08461", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P08461" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P08461-1" } ], "record_id": "pubmed.28178567", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "glytoucan_ac" ] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 6 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "exact_o_linked_glycan_sites", "count": 6 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 6 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "exact_o_linked_glycan_sites", "count": 6 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Myr 8, a novel unconventional myosin expressed during brain development associates with the protein phosphatase catalytic subunits 1alpha and 1gamma1.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2001", "authors": "Patel KG, Liu C, Cameron PL, Cameron RS", "reference": { "type": "PubMed", "id": "11588169", "url": "https://pubmed.ncbi.nlm.nih.gov/11588169" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ERC1-1", "protein_name": "Unconventional myosin-XVI", "gene_name": "Myo16", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9ERC1", "url": "https://www.uniprot.org/uniprotkb/Q9ERC1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.11588169", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Myosin 16 levels fluctuate during the cell cycle and are downregulated in response to DNA replication stress.", "journal": "Cytoskeleton (Hoboken, N.J.)", "date": "2013", "authors": "Cameron RS, Liu C, Pihkala JP", "reference": { "type": "PubMed", "id": "23596177", "url": "https://pubmed.ncbi.nlm.nih.gov/23596177" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ERC1-1", "protein_name": "Unconventional myosin-XVI", "gene_name": "Myo16", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9ERC1", "url": "https://www.uniprot.org/uniprotkb/Q9ERC1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.23596177", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential modulation of Ca(v)2.1 channels by calmodulin and Ca2+-binding protein 1.", "journal": "Nature neuroscience", "date": "2002", "authors": "Lee A, Westenbroek RE, Haeseleer F, Palczewski K, Scheuer T, Catterall WA", "reference": { "type": "PubMed", "id": "11865310", "url": "https://pubmed.ncbi.nlm.nih.gov/11865310" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88751-1", "protein_name": "Calcium-binding protein 1", "gene_name": "Cabp1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P54282-1", "protein_name": "Voltage-dependent P/Q-type calcium channel subunit alpha-1A", "gene_name": "Cacna1a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "O00555-8", "protein_name": "Voltage-dependent P/Q-type calcium channel subunit alpha-1A", "gene_name": "CACNA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZU7-4", "protein_name": "Calcium-binding protein 1", "gene_name": "CABP1", "tax_name": "Human" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88751", "url": "https://www.uniprot.org/uniprotkb/O88751" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.11865310", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The neuron-specific Ca2+-binding protein caldendrin: gene structure, splice isoforms, and expression in the rat central nervous system.", "journal": "Mol. Cell. Neurosci.", "date": "2002", "authors": "Laube G, Seidenbecher CI, Richter K, Dieterich DC, Hoffmann B, Landwehr M, Smalla KH, Winter C, Bockers TM, Wolf G, Gundelfinger ED, Kreutz MR", "reference": { "type": "PubMed", "id": "11906216", "url": "https://pubmed.ncbi.nlm.nih.gov/11906216" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88751-1", "protein_name": "Calcium-binding protein 1", "gene_name": "Cabp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88751", "url": "https://www.uniprot.org/uniprotkb/O88751" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.11906216", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Association of Caldendrin splice isoforms with secretory vesicles in neurohypophyseal axons and the pituitary.", "journal": "FEBS letters", "date": "2003", "authors": "Landwehr M, Redecker P, Dieterich DC, Richter K, Bockers TM, Gundelfinger ED, Kreutz MR", "reference": { "type": "PubMed", "id": "12860411", "url": "https://pubmed.ncbi.nlm.nih.gov/12860411" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88751-1", "protein_name": "Calcium-binding protein 1", "gene_name": "Cabp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88751", "url": "https://www.uniprot.org/uniprotkb/O88751" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.12860411", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Caldendrin but not calmodulin binds to light chain 3 of MAP1A/B: an association with the microtubule cytoskeleton highlighting exclusive binding partners for neuronal Ca(2+)-sensor proteins.", "journal": "J. Mol. Biol.", "date": "2004", "authors": "Seidenbecher CI, Landwehr M, Smalla KH, Kreutz M, Dieterich DC, Zuschratter W, Reissner C, Hammarback JA, Bockers TM, Gundelfinger ED, Kreutz MR", "reference": { "type": "PubMed", "id": "15095872", "url": "https://pubmed.ncbi.nlm.nih.gov/15095872" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88751-1", "protein_name": "Calcium-binding protein 1", "gene_name": "Cabp1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q62625-1", "protein_name": "Microtubule-associated protein 1 light chain 3 beta", "gene_name": "Map1lc3b", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9GZQ8-1", "protein_name": "Microtubule-associated protein 1 light chain 3 beta", "gene_name": "MAP1LC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZU7-4", "protein_name": "Calcium-binding protein 1", "gene_name": "CABP1", "tax_name": "Human" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88751", "url": "https://www.uniprot.org/uniprotkb/O88751" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.15095872", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Caldendrin-Jacob: a protein liaison that couples NMDA receptor signalling to the nucleus.", "journal": "PLoS Biol.", "date": "2008", "authors": "Dieterich DC, Karpova A, Mikhaylova M, Zdobnova I, Konig I, Landwehr M, Kreutz M, Smalla KH, Richter K, Landgraf P, Reissner C, Boeckers TM, Zuschratter W, Spilker C, Seidenbecher CI, Garner CC, Gundelfinger ED, Kreutz MR", "reference": { "type": "PubMed", "id": "18303947", "url": "https://pubmed.ncbi.nlm.nih.gov/18303947" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88751-1", "protein_name": "Calcium-binding protein 1", "gene_name": "Cabp1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9EPI6-1", "protein_name": "NMDA receptor synaptonuclear signaling and neuronal migration factor", "gene_name": "Nsmf", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P83953-1", "protein_name": "Importin subunit alpha-5", "gene_name": "Kpna1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88751", "url": "https://www.uniprot.org/uniprotkb/O88751" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "mutagenesis": [ { "start_pos": 241, "end_pos": 241, "sequence_org": "F", "sequence_mut": "E", "comment": "Loss of CABP1 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q9EPI6", "url": "https://www.uniprot.org/uniprotkb/Q9EPI6" }, { "database": "PubMed", "id": "18303947", "url": "https://pubmed.ncbi.nlm.nih.gov/18303947" } ], "uniprot_canonical_ac": "Q9EPI6-1" }, { "start_pos": 247, "end_pos": 252, "sequence_org": "RKRRKR", "sequence_mut": "", "comment": "Extranuclear localization and reduced CABP1 and KPNA1 binding. Shows a reduction in synaptic contacts and dendritic processes.", "evidence": [ { "database": "UniProtKB", "id": "Q9EPI6", "url": "https://www.uniprot.org/uniprotkb/Q9EPI6" }, { "database": "PubMed", "id": "18303947", "url": "https://pubmed.ncbi.nlm.nih.gov/18303947" } ], "uniprot_canonical_ac": "Q9EPI6-1" }, { "start_pos": 260, "end_pos": 261, "sequence_org": "IQ", "sequence_mut": "GG", "comment": "No effect on CABP1 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q9EPI6", "url": "https://www.uniprot.org/uniprotkb/Q9EPI6" }, { "database": "PubMed", "id": "18303947", "url": "https://pubmed.ncbi.nlm.nih.gov/18303947" } ], "uniprot_canonical_ac": "Q9EPI6-1" }, { "start_pos": 2, "end_pos": 2, "sequence_org": "G", "sequence_mut": "A", "comment": "Exclusive nuclear localization. Shows a reduction in synaptic contacts and dendritic processes.", "evidence": [ { "database": "UniProtKB", "id": "Q9EPI6", "url": "https://www.uniprot.org/uniprotkb/Q9EPI6" }, { "database": "PubMed", "id": "18303947", "url": "https://pubmed.ncbi.nlm.nih.gov/18303947" } ], "uniprot_canonical_ac": "Q9EPI6-1" } ], "record_id": "pubmed.18303947", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CaBP1, a neuronal Ca2+ sensor protein, inhibits inositol trisphosphate receptors by clamping intersubunit interactions.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013", "authors": "Li C, Enomoto M, Rossi AM, Seo MD, Rahman T, Stathopulos PB, Taylor CW, Ikura M, Ames JB", "reference": { "type": "PubMed", "id": "23650371", "url": "https://pubmed.ncbi.nlm.nih.gov/23650371" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88751-1", "protein_name": "Calcium-binding protein 1", "gene_name": "Cabp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88751", "url": "https://www.uniprot.org/uniprotkb/O88751" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.23650371", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular dynamics of the neuronal EF-hand Ca2+-sensor Caldendrin.", "journal": "PloS one", "date": "2014", "authors": "Reddy PP, Raghuram V, Hradsky J, Spilker C, Chakraborty A, Sharma Y, Mikhaylova M, Kreutz MR", "reference": { "type": "PubMed", "id": "25058677", "url": "https://pubmed.ncbi.nlm.nih.gov/25058677" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88751-1", "protein_name": "Calcium-binding protein 1", "gene_name": "Cabp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88751", "url": "https://www.uniprot.org/uniprotkb/O88751" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.25058677", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Intermotif Communication Induces Hierarchical Ca(2+) Filling of Caldendrin.", "journal": "Biochemistry", "date": "2017", "authors": "Kiran U, Regur P, Kreutz MR, Sharma Y, Chakraborty A", "reference": { "type": "PubMed", "id": "28437073", "url": "https://pubmed.ncbi.nlm.nih.gov/28437073" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88751-1", "protein_name": "Calcium-binding protein 1", "gene_name": "Cabp1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88751", "url": "https://www.uniprot.org/uniprotkb/O88751" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.28437073", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Caldendrin, a novel neuronal calcium-binding protein confined to the somato-dendritic compartment.", "journal": "J. Biol. Chem.", "date": "1998", "authors": "Seidenbecher CI, Langnaese K, Sanmarti-Vila L, Boeckers TM, Smalla KH, Sabel BA, Garner CC, Gundelfinger ED, Kreutz MR", "reference": { "type": "PubMed", "id": "9694893", "url": "https://pubmed.ncbi.nlm.nih.gov/9694893" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88751-1", "protein_name": "Calcium-binding protein 1", "gene_name": "Cabp1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9NZU7-4", "protein_name": "Calcium-binding protein 1", "gene_name": "CABP1", "tax_name": "Human" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88751", "url": "https://www.uniprot.org/uniprotkb/O88751" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.9694893", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Subtype-dependence of NMDA receptor channel open probability.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "1999-08-15", "authors": "Chen N, Luo T, Raymond L A", "reference": { "type": "PubMed", "id": "10436042", "url": "https://pubmed.ncbi.nlm.nih.gov/10436042" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00960-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2B", "gene_name": "Grin2b", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P35436-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2A", "gene_name": "Grin2a", "tax_name": "Mouse" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.10436042", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hypoxia induces activation of a N-methyl-D-aspartate glutamate receptor-protein kinase C pathway in the dorsocaudal brainstem of the conscious rat.", "journal": "Neuroscience letters", "date": "2000", "authors": "Simakajornboon N, Gozal E, Gozal YM, Gozal D", "reference": { "type": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.10643790", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Alterations in subunit expression, composition, and phosphorylation of striatal N-methyl-D-aspartate glutamate receptors in a rat 6-hydroxydopamine model of Parkinson's disease.", "journal": "Molecular pharmacology", "date": "2000", "authors": "Dunah AW, Wang Y, Yasuda RP, Kameyama K, Huganir RL, Wolfe BB, Standaert DG", "reference": { "type": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 890, "end_pos": 890, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "11158244", "url": "https://pubmed.ncbi.nlm.nih.gov/11158244" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15748156", "url": "https://pubmed.ncbi.nlm.nih.gov/15748156" }, { "database": "PubMed", "id": "20667449", "url": "https://pubmed.ncbi.nlm.nih.gov/20667449" }, { "database": "PubMed", "id": "15936117", "url": "https://pubmed.ncbi.nlm.nih.gov/15936117" } ], "site_lbl": "Ser890", "uniprot_canonical_ac": "P35439-1" }, { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.10648644", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein kinase C activation induces tyrosine phosphorylation of the NR2A and NR2B subunits of the NMDA receptor.", "journal": "Journal of neurochemistry", "date": "2001", "authors": "Grosshans DR, Browning MD", "reference": { "type": "PubMed", "id": "11158244", "url": "https://pubmed.ncbi.nlm.nih.gov/11158244" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 890, "end_pos": 890, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "11158244", "url": "https://pubmed.ncbi.nlm.nih.gov/11158244" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15748156", "url": "https://pubmed.ncbi.nlm.nih.gov/15748156" }, { "database": "PubMed", "id": "20667449", "url": "https://pubmed.ncbi.nlm.nih.gov/20667449" }, { "database": "PubMed", "id": "15936117", "url": "https://pubmed.ncbi.nlm.nih.gov/15936117" } ], "site_lbl": "Ser890", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.11158244", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Assembly with the NR1 subunit is required for surface expression of NR3A-containing NMDA receptors.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2001", "authors": "Perez-Otano I, Schulteis CT, Contractor A, Lipton SA, Trimmer JS, Sucher NJ, Heinemann SF", "reference": { "type": "PubMed", "id": "11160393", "url": "https://pubmed.ncbi.nlm.nih.gov/11160393" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9R1M7-1", "protein_name": "Glutamate receptor ionotropic, NMDA 3A", "gene_name": "Grin3a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00959-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2A", "gene_name": "Grin2a", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.11160393", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An NMDA receptor signaling complex with protein phosphatase 2A.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2001", "authors": "Chan SF, Sucher NJ", "reference": { "type": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9R1M7-1", "protein_name": "Glutamate receptor ionotropic, NMDA 3A", "gene_name": "Grin3a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00959-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2A", "gene_name": "Grin2a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00960-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2B", "gene_name": "Grin2b", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q8TCU5-1", "protein_name": "Glutamate receptor ionotropic, NMDA 3A", "gene_name": "GRIN3A", "tax_name": "Human" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.11588171", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Excitatory glycine receptors containing the NR3 family of NMDA receptor subunits.", "journal": "Nature", "date": "2002", "authors": "Chatterton JE, Awobuluyi M, Premkumar LS, Takahashi H, Talantova M, Shin Y, Cui J, Tu S, Sevarino KA, Nakanishi N, Tong G, Lipton SA, Zhang D", "reference": { "type": "PubMed", "id": "11823786", "url": "https://pubmed.ncbi.nlm.nih.gov/11823786" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q8VHN2-1", "protein_name": "Glutamate receptor ionotropic, NMDA 3B", "gene_name": "Grin3b", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9R1M7-1", "protein_name": "Glutamate receptor ionotropic, NMDA 3A", "gene_name": "Grin3a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q91ZU9-1", "protein_name": "Glutamate receptor ionotropic, NMDA 3B", "gene_name": "Grin3b", "tax_name": "Mouse" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.11823786", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization and comparison of the NR3A subunit of the NMDA receptor in recombinant systems and primary cortical neurons.", "journal": "Journal of neurophysiology", "date": "2002-04", "authors": "Sasaki Yasnory F, Rothe Thomas, Premkumar Louis S, Das Saumya, Cui Jiankun, Talantova Maria V, Wong Hon-Kit, Gong Xiandi, Chan Shing Fai, Zhang Dongxian, Nakanishi Nobuki, Sucher Nikolaus J, Lipton Stuart A", "reference": { "type": "PubMed", "id": "11929923", "url": "https://pubmed.ncbi.nlm.nih.gov/11929923" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9R1M7-1", "protein_name": "Glutamate receptor ionotropic, NMDA 3A", "gene_name": "Grin3a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00959-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2A", "gene_name": "Grin2a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00960-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2B", "gene_name": "Grin2b", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.11929923", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Association of NR3A with the N-methyl-D-aspartate receptor NR1 and NR2 subunits.", "journal": "Molecular pharmacology", "date": "2002-11", "authors": "Al-Hallaq Rana A, Jarabek Bryan R, Fu Zhanyan, Vicini Stefano, Wolfe Barry B, Yasuda Robert P", "reference": { "type": "PubMed", "id": "12391275", "url": "https://pubmed.ncbi.nlm.nih.gov/12391275" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9R1M7-1", "protein_name": "Glutamate receptor ionotropic, NMDA 3A", "gene_name": "Grin3a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00959-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2A", "gene_name": "Grin2a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00960-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2B", "gene_name": "Grin2b", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.12391275", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of protein kinase A in phosphorylation of NMDA receptor 1 subunits in dorsal horn and spinothalamic tract neurons after intradermal injection of capsaicin in rats.", "journal": "Neuroscience", "date": "2002", "authors": "Zou X, Lin Q, Willis WD", "reference": { "type": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.12435416", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cocaine treatment- and withdrawal-induced alterations in the expression and serine phosphorylation of the NR1 NMDA receptor subunit.", "journal": "Psychopharmacology", "date": "2002", "authors": "Loftis JM, Janowsky A", "reference": { "type": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" }, { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.12457264", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanisms of activation, inhibition and specificity: crystal structures of the NMDA receptor NR1 ligand-binding core.", "journal": "EMBO J.", "date": "2003", "authors": "Furukawa Hiroyasu, Gouaux Eric", "reference": { "type": "PubMed", "id": "12805203", "url": "https://pubmed.ncbi.nlm.nih.gov/12805203" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.12805203", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Heteromeric NMDA receptors: molecular and functional distinction of subtypes.", "journal": "Science (New York, N.Y.)", "date": "1992", "authors": "Monyer H, Sprengel R, Schoepfer R, Herb A, Higuchi M, Lomeli H, Burnashev N, Sakmann B, Seeburg PH", "reference": { "type": "PubMed", "id": "1350383", "url": "https://pubmed.ncbi.nlm.nih.gov/1350383" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q14957-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2C", "gene_name": "GRIN2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00961-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2C", "gene_name": "Grin2c", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00959-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2A", "gene_name": "Grin2a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00960-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2B", "gene_name": "Grin2b", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.1350383", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structures and properties of seven isoforms of the NMDA receptor generated by alternative splicing.", "journal": "Biochem. Biophys. Res. Commun.", "date": "1992", "authors": "Sugihara H, Moriyoshi K, Ishii T, Masu M, Nakanishi S", "reference": { "type": "PubMed", "id": "1352681", "url": "https://pubmed.ncbi.nlm.nih.gov/1352681" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.1352681", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Combinatorial RNA splicing alters the surface charge on the NMDA receptor.", "journal": "FEBS Lett.", "date": "1992", "authors": "Anantharam V, Panchal R G, Wilson A, Kolchine V V, Treistman S N, Bayley H", "reference": { "type": "PubMed", "id": "1386026", "url": "https://pubmed.ncbi.nlm.nih.gov/1386026" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.1386026", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Alternative splicing generates functionally distinct N-methyl-D-aspartate receptors.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1992-09-15", "authors": "Nakanishi N, Axel R, Shneider N A", "reference": { "type": "PubMed", "id": "1388270", "url": "https://pubmed.ncbi.nlm.nih.gov/1388270" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.1388270", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential expression and ser897 phosphorylation of striatal N-methyl-d-aspartate receptor subunit NR1 in animal models of Parkinson's disease.", "journal": "Experimental neurology", "date": "2004-05", "authors": "Betarbet Ranjita, Poisik Olga, Sherer Todd B, Greenamyre J Timothy", "reference": { "type": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.15081590", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct expression of phosphorylated N-methyl-D-aspartate receptor NR1 subunits by projection neurons and interneurons in the striatum of normal and amphetamine-treated rats.", "journal": "The Journal of comparative neurology", "date": "2004", "authors": "Liu Z, Mao L, Parelkar NK, Tang Q, Samdani S, Wang JQ", "reference": { "type": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 890, "end_pos": 890, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "11158244", "url": "https://pubmed.ncbi.nlm.nih.gov/11158244" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15748156", "url": "https://pubmed.ncbi.nlm.nih.gov/15748156" }, { "database": "PubMed", "id": "20667449", "url": "https://pubmed.ncbi.nlm.nih.gov/20667449" }, { "database": "PubMed", "id": "15936117", "url": "https://pubmed.ncbi.nlm.nih.gov/15936117" } ], "site_lbl": "Ser890", "uniprot_canonical_ac": "P35439-1" }, { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.15174082", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Peripheral noxious stimulation induces phosphorylation of the NMDA receptor NR1 subunit at the PKC-dependent site, serine-896, in spinal cord dorsal horn neurons.", "journal": "The European journal of neuroscience", "date": "2004", "authors": "Brenner GJ, Ji RR, Shaffer S, Woolf CJ", "reference": { "type": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.15233747", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Effect of protein kinase C blockade on phosphorylation of NR1 in dorsal horn and spinothalamic tract cells caused by intradermal capsaicin injection in rats.", "journal": "Brain research", "date": "2004", "authors": "Zou X, Lin Q, Willis WD", "reference": { "type": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.15312791", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Brain-derived neurotrophic factor induces NMDA receptor subunit one phosphorylation via ERK and PKC in the rat spinal cord.", "journal": "The European journal of neuroscience", "date": "2004", "authors": "Slack SE, Pezet S, McMahon SB, Thompson SW, Malcangio M", "reference": { "type": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.15379998", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Changes in phosphorylation of the NMDA receptor in the rat hippocampus induced by status epilepticus.", "journal": "Journal of neurochemistry", "date": "2005", "authors": "Niimura M, Moussa R, Bissoon N, Ikeda-Douglas C, Milgram NW, Gurd JW", "reference": { "type": "PubMed", "id": "15748156", "url": "https://pubmed.ncbi.nlm.nih.gov/15748156" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 890, "end_pos": 890, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "11158244", "url": "https://pubmed.ncbi.nlm.nih.gov/11158244" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15748156", "url": "https://pubmed.ncbi.nlm.nih.gov/15748156" }, { "database": "PubMed", "id": "20667449", "url": "https://pubmed.ncbi.nlm.nih.gov/20667449" }, { "database": "PubMed", "id": "15936117", "url": "https://pubmed.ncbi.nlm.nih.gov/15936117" } ], "site_lbl": "Ser890", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.15748156", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Serines 890 and 896 of the NMDA receptor subunit NR1 are differentially phosphorylated by protein kinase C isoforms.", "journal": "Neurochemistry international", "date": "2005", "authors": "Sanchez-Perez AM, Felipo V", "reference": { "type": "PubMed", "id": "15936117", "url": "https://pubmed.ncbi.nlm.nih.gov/15936117" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P63319-1", "protein_name": "Protein kinase C gamma type", "gene_name": "Prkcg", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q05586-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "GRIN1", "tax_name": "Human" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 890, "end_pos": 890, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "11158244", "url": "https://pubmed.ncbi.nlm.nih.gov/11158244" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15748156", "url": "https://pubmed.ncbi.nlm.nih.gov/15748156" }, { "database": "PubMed", "id": "20667449", "url": "https://pubmed.ncbi.nlm.nih.gov/20667449" }, { "database": "PubMed", "id": "15936117", "url": "https://pubmed.ncbi.nlm.nih.gov/15936117" } ], "site_lbl": "Ser890", "uniprot_canonical_ac": "P35439-1" }, { "start_pos": 890, "end_pos": 890, "kinase_uniprot_canonical_ac": "P05129-1", "kinase_gene_name": "PRKCG", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q05586", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q05586" }, { "database": "PubMed", "id": "15936117", "url": "https://pubmed.ncbi.nlm.nih.gov/15936117" } ], "site_lbl": "Ser890", "uniprot_canonical_ac": "Q05586-1" } ], "record_id": "pubmed.15936117", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanism of partial agonist action at the NR1 subunit of NMDA receptors.", "journal": "Neuron", "date": "2005-07-07", "authors": "Inanobe Atsushi, Furukawa Hiroyasu, Gouaux Eric", "reference": { "type": "PubMed", "id": "15996549", "url": "https://pubmed.ncbi.nlm.nih.gov/15996549" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.15996549", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Subunit arrangement and function in NMDA receptors.", "journal": "Nature", "date": "2005", "authors": "Furukawa H, Singh SK, Mancusso R, Gouaux E", "reference": { "type": "PubMed", "id": "16281028", "url": "https://pubmed.ncbi.nlm.nih.gov/16281028" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00959-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2A", "gene_name": "Grin2a", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.16281028", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of phosphorylation of NMDA receptor NR1 subunits in the rat neostriatum by group I metabotropic glutamate receptors in vivo.", "journal": "Neuroscience letters", "date": "2006", "authors": "Choe ES, Shin EH, Wang JQ", "reference": { "type": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" }, { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.16300895", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Propofol inhibits phosphorylation of N-methyl-D-aspartate receptor NR1 subunits in neurons.", "journal": "Anesthesiology", "date": "2006", "authors": "Kingston S, Mao L, Yang L, Arora A, Fibuch EE, Wang JQ", "reference": { "type": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.16571972", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ablation of gene expression of N-methyl-D-aspartate receptor one by antisense oligonucleotides in striatal neurons in culture.", "journal": "Neuro-Signals", "date": "2005", "authors": "Lui PW, Yeung CW, Yung WH, Shi Y, Chen LW, Chan YS, Yung KK", "reference": { "type": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" }, { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.16772733", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Apparent homomeric NR1 currents observed in Xenopus oocytes are caused by an endogenous NR2 subunit.", "journal": "Journal of molecular biology", "date": "2008-02-22", "authors": "Schmidt Carsten, Hollmann Michael", "reference": { "type": "PubMed", "id": "18177891", "url": "https://pubmed.ncbi.nlm.nih.gov/18177891" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.18177891", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning and characterization of the rat NMDA receptor.", "journal": "Nature", "date": "1991-11-07", "authors": "Moriyoshi K, Masu M, Ishii T, Shigemoto R, Mizuno N, Nakanishi S", "reference": { "type": "PubMed", "id": "1834949", "url": "https://pubmed.ncbi.nlm.nih.gov/1834949" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.1834949", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Individual and combined effects of methamphetamine and ketamine on conditioned place preference and NR1 receptor phosphorylation in rats.", "journal": "Neuro-Signals", "date": "2006-2007", "authors": "Xu DD, Mo ZX, Yung KK, Yang Y, Leung AW", "reference": { "type": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.18437031", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Platelet-activating factor-induced synaptic facilitation is associated with increased calcium/calmodulin-dependent protein kinase II, protein kinase C and extracellular signal-regulated kinase activities in the rat hippocampal CA1 region.", "journal": "Neuroscience", "date": "2010", "authors": "Moriguchi S, Shioda N, Yamamoto Y, Fukunaga K", "reference": { "type": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "O35263-1", "protein_name": "Platelet-activating factor acetylhydrolase IB subunit alpha1", "gene_name": "Pafah1b3", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.20074623", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Metabotropic glutamate mGlu5 receptor-mediated serine phosphorylation of NMDA receptor subunit NR1 in hippocampal CA1 region after transient global ischemia in rats.", "journal": "European journal of pharmacology", "date": "2010", "authors": "Takagi N, Besshoh S, Morita H, Terao M, Takeo S, Tanonaka K", "reference": { "type": "PubMed", "id": "20667449", "url": "https://pubmed.ncbi.nlm.nih.gov/20667449" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 890, "end_pos": 890, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "11158244", "url": "https://pubmed.ncbi.nlm.nih.gov/11158244" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15748156", "url": "https://pubmed.ncbi.nlm.nih.gov/15748156" }, { "database": "PubMed", "id": "20667449", "url": "https://pubmed.ncbi.nlm.nih.gov/20667449" }, { "database": "PubMed", "id": "15936117", "url": "https://pubmed.ncbi.nlm.nih.gov/15936117" } ], "site_lbl": "Ser890", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.20667449", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "[Inhibitory effect of interleukin-6 on NMDA-stimulated neuronal firing activity and possible mechanism involved in the effect].", "journal": "Zhongguo ying yong sheng li xue za zhi = Zhongguo yingyong shenglixue zazhi = Chinese journal of applied physiology", "date": "2010", "authors": "Zhan XF, Li B, Wu B, Peng YP, Qiu YH", "reference": { "type": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.21038693", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Contribution of Primary Afferent Input to Trigeminal Astroglial Hyperactivity, Cytokine Induction and NMDA Receptor Phosphorylation.", "journal": "The open pain journal", "date": "2010-03-01", "authors": "Wang H, Guo W, Yang K, Wei F, Dubner R, Ren K", "reference": { "type": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.21170295", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Separation of domain contacts is required for heterotetrameric assembly of functional NMDA receptors.", "journal": "J. Neurosci.", "date": "2011", "authors": "Farina Anthony N, Blain Katherine Y, Maruo Tomohiko, Kwiatkowski Witek, Choe Senyon, Nakagawa Terunaga", "reference": { "type": "PubMed", "id": "21389213", "url": "https://pubmed.ncbi.nlm.nih.gov/21389213" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.21389213", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Upregulation of protein phosphatase 2A and NR3A-pleiotropic effect of simvastatin on ischemic stroke rats.", "journal": "PloS one", "date": "2012", "authors": "Zhu M, Wang J, Liu M, Du D, Xia C, Shen L, Zhu D", "reference": { "type": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" }, { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.23251573", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential phosphorylation of GluN1-MAPKs in rat brain reward circuits following long-term alcohol exposure.", "journal": "PloS one", "date": "2013", "authors": "Zhu Y, Wang Y, Zhao B, Wei S, Xu M, Liu E, Lai J", "reference": { "type": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P49185-1", "protein_name": "Mitogen-activated protein kinase 8", "gene_name": "Mapk8", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" }, { "start_pos": 183, "end_pos": 183, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by MAP2K7", "evidence": [ { "database": "UniProtKB", "id": "P49185", "url": "https://www.uniprot.org/uniprotkb/P49185" }, { "database": "iPTMnet", "id": "P49185", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49185" }, { "database": "PubMed", "id": "21151908", "url": "https://pubmed.ncbi.nlm.nih.gov/21151908" }, { "database": "PubMed", "id": "23139803", "url": "https://pubmed.ncbi.nlm.nih.gov/23139803" }, { "database": "PubMed", "id": "23280045", "url": "https://pubmed.ncbi.nlm.nih.gov/23280045" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "23554623", "url": "https://pubmed.ncbi.nlm.nih.gov/23554623" }, { "database": "PubMed", "id": "24386130", "url": "https://pubmed.ncbi.nlm.nih.gov/24386130" }, { "database": "PubMed", "id": "25120278", "url": "https://pubmed.ncbi.nlm.nih.gov/25120278" }, { "database": "PubMed", "id": "25978724", "url": "https://pubmed.ncbi.nlm.nih.gov/25978724" }, { "database": "PubMed", "id": "29595913", "url": "https://pubmed.ncbi.nlm.nih.gov/29595913" }, { "database": "PubMed", "id": "29882093", "url": "https://pubmed.ncbi.nlm.nih.gov/29882093" } ], "site_lbl": "Thr183", "uniprot_canonical_ac": "P49185-1" }, { "start_pos": 185, "end_pos": 185, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by MAP2K4", "evidence": [ { "database": "UniProtKB", "id": "P49185", "url": "https://www.uniprot.org/uniprotkb/P49185" }, { "database": "iPTMnet", "id": "P49185", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49185" }, { "database": "PubMed", "id": "21151908", "url": "https://pubmed.ncbi.nlm.nih.gov/21151908" }, { "database": "PubMed", "id": "23139803", "url": "https://pubmed.ncbi.nlm.nih.gov/23139803" }, { "database": "PubMed", "id": "23280045", "url": "https://pubmed.ncbi.nlm.nih.gov/23280045" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "23554623", "url": "https://pubmed.ncbi.nlm.nih.gov/23554623" }, { "database": "PubMed", "id": "24386130", "url": "https://pubmed.ncbi.nlm.nih.gov/24386130" }, { "database": "PubMed", "id": "25120278", "url": "https://pubmed.ncbi.nlm.nih.gov/25120278" }, { "database": "PubMed", "id": "25978724", "url": "https://pubmed.ncbi.nlm.nih.gov/25978724" }, { "database": "PubMed", "id": "29595913", "url": "https://pubmed.ncbi.nlm.nih.gov/29595913" }, { "database": "PubMed", "id": "29882093", "url": "https://pubmed.ncbi.nlm.nih.gov/29882093" } ], "site_lbl": "Tyr185", "uniprot_canonical_ac": "P49185-1" } ], "record_id": "pubmed.23372792", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Endogenous PI3K/Akt and NMDAR act independently in the regulation of CREB activity in lumbosacral spinal cord in cystitis.", "journal": "Experimental neurology", "date": "2013", "authors": "Kay JC, Xia CM, Liu M, Shen S, Yu SJ, Chung C, Qiao LY", "reference": { "type": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" }, { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.24184018", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of a heterotetrameric NMDA receptor ion channel.", "journal": "Science (New York, N.Y.)", "date": "2014", "authors": "Karakas E, Furukawa H", "reference": { "type": "PubMed", "id": "24876489", "url": "https://pubmed.ncbi.nlm.nih.gov/24876489" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00960-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2B", "gene_name": "Grin2b", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3Q41&bu=0&command=select+.C:203;+center+selection;+zoom+selection" }, "start_pos": 203, "start_aa": "Asn", "end_pos": 203, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn203", "evidence": [ { "id": "P35439", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P35439#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24090084" }, { "id": "3Q41", "database": "PDB", "url": "https://www.rcsb.org/sequence/3Q41" }, { "id": "4PE5", "database": "PDB", "url": "https://www.rcsb.org/sequence/4PE5" }, { "id": "24876489", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24876489" }, { "id": "6MMA", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMA" }, { "id": "6MMB", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMB" }, { "id": "6MMG", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMG" }, { "id": "6MMI", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMI" }, { "id": "6MMJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMJ" }, { "id": "6MMM", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMM" }, { "id": "6MMN", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMN" }, { "id": "6MMR", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMR" }, { "id": "6MMS", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMS" }, { "id": "6MMU", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMU" }, { "id": "6MMV", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMV" }, { "id": "6MMW", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMW" }, { "id": "6MMX", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMX" }, { "id": "6WHR", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHR" }, { "id": "6WHS", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHS" }, { "id": "6WHT", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHT" }, { "id": "6WHU", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHU" }, { "id": "6WI1", "database": "PDB", "url": "https://www.rcsb.org/structure/6WI1" }, { "id": "7SAB", "database": "PDB", "url": "https://www.rcsb.org/structure/7SAB" }, { "id": "7YFI", "database": "PDB", "url": "https://www.rcsb.org/structure/7YFI" }, { "id": "8HDK", "database": "PDB", "url": "https://www.rcsb.org/structure/8HDK" }, { "id": "6MMT", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMT" }, { "id": "6MMP", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMP" }, { "id": "6MML", "database": "PDB", "url": "https://www.rcsb.org/structure/6MML" }, { "id": "6MMH", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMH" }, { "id": "6MM9", "database": "PDB", "url": "https://www.rcsb.org/structure/6MM9" }, { "id": "8XLK", "database": "PDB", "url": "https://www.rcsb.org/structure/8XLK" }, { "id": "9C7C", "database": "PDB", "url": "https://www.rcsb.org/structure/9C7C" }, { "id": "9PZW", "database": "PDB", "url": "https://www.rcsb.org/structure/9PZW" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P35439-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3Q41&bu=0&command=select+.C:276;+center+selection;+zoom+selection" }, "start_pos": 276, "start_aa": "Asn", "end_pos": 276, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn276", "evidence": [ { "id": "P35439", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P35439#ptm_processing" }, { "id": "3Q41", "database": "PDB", "url": "https://www.rcsb.org/sequence/3Q41" }, { "id": "4PE5", "database": "PDB", "url": "https://www.rcsb.org/sequence/4PE5" }, { "id": "24876489", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24876489" }, { "id": "6CNA", "database": "PDB", "url": "https://www.rcsb.org/structure/6CNA" }, { "id": "6MMA", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMA" }, { "id": "6MMB", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMB" }, { "id": "6MMJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMJ" }, { "id": "6MMM", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMM" }, { "id": "6MMR", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMR" }, { "id": "6MMS", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMS" }, { "id": "6MMV", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMV" }, { "id": "6MMW", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMW" }, { "id": "6MMX", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMX" }, { "id": "6WHR", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHR" }, { "id": "6WHS", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHS" }, { "id": "6WHU", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHU" }, { "id": "6WHV", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHV" }, { "id": "6WI1", "database": "PDB", "url": "https://www.rcsb.org/structure/6WI1" }, { "id": "7YFI", "database": "PDB", "url": "https://www.rcsb.org/structure/7YFI" }, { "id": "6MMT", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMT" }, { "id": "6MMP", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMP" }, { "id": "6MML", "database": "PDB", "url": "https://www.rcsb.org/structure/6MML" }, { "id": "6MMK", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMK" }, { "id": "6MMH", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMH" }, { "id": "6MM9", "database": "PDB", "url": "https://www.rcsb.org/structure/6MM9" }, { "id": "8XLK", "database": "PDB", "url": "https://www.rcsb.org/structure/8XLK" }, { "id": "9C7C", "database": "PDB", "url": "https://www.rcsb.org/structure/9C7C" }, { "id": "9PZW", "database": "PDB", "url": "https://www.rcsb.org/structure/9PZW" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P35439-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4PE5&bu=0&command=select+.C:300;+center+selection;+zoom+selection" }, "start_pos": 300, "start_aa": "Asn", "end_pos": 300, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn300", "evidence": [ { "id": "P35439", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P35439#ptm_processing" }, { "id": "4PE5", "database": "PDB", "url": "https://www.rcsb.org/sequence/4PE5" }, { "id": "24876489", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24876489" }, { "id": "6CNA", "database": "PDB", "url": "https://www.rcsb.org/structure/6CNA" }, { "id": "6MMA", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMA" }, { "id": "6MMB", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMB" }, { "id": "6MMG", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMG" }, { "id": "6MMJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMJ" }, { "id": "6MMM", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMM" }, { "id": "6MMN", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMN" }, { "id": "6MMR", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMR" }, { "id": "6MMS", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMS" }, { "id": "6MMU", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMU" }, { "id": "6MMV", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMV" }, { "id": "6MMW", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMW" }, { "id": "6MMX", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMX" }, { "id": "7YFG", "database": "PDB", "url": "https://www.rcsb.org/structure/7YFG" }, { "id": "7YFH", "database": "PDB", "url": "https://www.rcsb.org/structure/7YFH" }, { "id": "7YFI", "database": "PDB", "url": "https://www.rcsb.org/structure/7YFI" }, { "id": "6MMT", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMT" }, { "id": "6MMP", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMP" }, { "id": "6MML", "database": "PDB", "url": "https://www.rcsb.org/structure/6MML" }, { "id": "6MMK", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMK" }, { "id": "6MMH", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMH" }, { "id": "6MM9", "database": "PDB", "url": "https://www.rcsb.org/structure/6MM9" }, { "id": "8XLK", "database": "PDB", "url": "https://www.rcsb.org/structure/8XLK" }, { "id": "9C7C", "database": "PDB", "url": "https://www.rcsb.org/structure/9C7C" }, { "id": "9C7R", "database": "PDB", "url": "https://www.rcsb.org/structure/9C7R" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P35439-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3Q41&bu=0&command=select+.C:368;+center+selection;+zoom+selection" }, "start_pos": 368, "start_aa": "Asn", "end_pos": 368, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn368", "evidence": [ { "id": "P35439", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P35439#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24090084" }, { "id": "3Q41", "database": "PDB", "url": "https://www.rcsb.org/sequence/3Q41" }, { "id": "4PE5", "database": "PDB", "url": "https://www.rcsb.org/sequence/4PE5" }, { "id": "24876489", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24876489" }, { "id": "6MMA", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMA" }, { "id": "6MMB", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMB" }, { "id": "6MMG", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMG" }, { "id": "6MMI", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMI" }, { "id": "6MMJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMJ" }, { "id": "6MMM", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMM" }, { "id": "6MMR", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMR" }, { "id": "6MMU", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMU" }, { "id": "6MMV", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMV" }, { "id": "6MMW", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMW" }, { "id": "6WHX", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHX" }, { "id": "7SAA", "database": "PDB", "url": "https://www.rcsb.org/structure/7SAA" }, { "id": "7SAC", "database": "PDB", "url": "https://www.rcsb.org/structure/7SAC" }, { "id": "7SAD", "database": "PDB", "url": "https://www.rcsb.org/structure/7SAD" }, { "id": "7YFI", "database": "PDB", "url": "https://www.rcsb.org/structure/7YFI" }, { "id": "8HDK", "database": "PDB", "url": "https://www.rcsb.org/structure/8HDK" }, { "id": "6MML", "database": "PDB", "url": "https://www.rcsb.org/structure/6MML" }, { "id": "6MMK", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMK" }, { "id": "6MMH", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMH" }, { "id": "6MM9", "database": "PDB", "url": "https://www.rcsb.org/structure/6MM9" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P35439-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4PE5&bu=0&command=select+.A:440;+center+selection;+zoom+selection" }, "start_pos": 440, "start_aa": "Asn", "end_pos": 440, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn440", "evidence": [ { "id": "P35439", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P35439#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24090084" }, { "id": "4PE5", "database": "PDB", "url": "https://www.rcsb.org/sequence/4PE5" }, { "id": "24876489", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24876489" }, { "id": "6MMA", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMA" }, { "id": "6MMB", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMB" }, { "id": "6MMG", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMG" }, { "id": "6MMI", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMI" }, { "id": "6MMJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMJ" }, { "id": "6MMM", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMM" }, { "id": "6MMR", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMR" }, { "id": "6MMS", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMS" }, { "id": "6MMU", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMU" }, { "id": "6MMV", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMV" }, { "id": "6MMW", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMW" }, { "id": "6MMX", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMX" }, { "id": "7YFG", "database": "PDB", "url": "https://www.rcsb.org/structure/7YFG" }, { "id": "7YFH", "database": "PDB", "url": "https://www.rcsb.org/structure/7YFH" }, { "id": "7YFI", "database": "PDB", "url": "https://www.rcsb.org/structure/7YFI" }, { "id": "6MMT", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMT" }, { "id": "6MMP", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMP" }, { "id": "6MML", "database": "PDB", "url": "https://www.rcsb.org/structure/6MML" }, { "id": "6MMK", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMK" }, { "id": "6MMH", "database": "PDB", "url": "https://www.rcsb.org/structure/6MMH" }, { "id": "6MM9", "database": "PDB", "url": "https://www.rcsb.org/structure/6MM9" }, { "id": "9C7C", "database": "PDB", "url": "https://www.rcsb.org/structure/9C7C" }, { "id": "9C7R", "database": "PDB", "url": "https://www.rcsb.org/structure/9C7R" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P35439-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3JPW&bu=0&command=select+.A:341;+center+selection;+zoom+selection" }, "start_pos": 341, "start_aa": "Asn", "end_pos": 341, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn341", "evidence": [ { "id": "Q00960", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q00960#ptm_processing" }, { "id": "19910922", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19910922" }, { "id": "21677647", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21677647" }, { "id": "27916457", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/27916457" }, { "id": "3QEL", "database": "PDB", "url": "https://www.rcsb.org/sequence/3QEL" }, { "id": "3JPW", "database": "PDB", "url": "https://www.rcsb.org/sequence/3JPW" }, { "id": "3QEM", "database": "PDB", "url": "https://www.rcsb.org/sequence/3QEM" }, { "id": "5TPZ", "database": "PDB", "url": "https://www.rcsb.org/sequence/5TPZ" }, { "id": "4PE5", "database": "PDB", "url": "https://www.rcsb.org/sequence/4PE5" }, { "id": "24876489", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24876489" }, { "id": "3JPY", "database": "PDB", "url": "https://www.rcsb.org/sequence/3JPY" }, { "id": "6CNA", "database": "PDB", "url": "https://www.rcsb.org/structure/6CNA" }, { "id": "6E7R", "database": "PDB", "url": "https://www.rcsb.org/structure/6E7R" }, { "id": "6E7S", "database": "PDB", "url": "https://www.rcsb.org/structure/6E7S" }, { "id": "6E7T", "database": "PDB", "url": "https://www.rcsb.org/structure/6E7T" }, { "id": "6E7U", "database": "PDB", "url": "https://www.rcsb.org/structure/6E7U" }, { "id": "6E7W", "database": "PDB", "url": "https://www.rcsb.org/structure/6E7W" }, { "id": "6E7X", "database": "PDB", "url": "https://www.rcsb.org/structure/6E7X" }, { "id": "6WHR", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHR" }, { "id": "6WHS", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHS" }, { "id": "6WI1", "database": "PDB", "url": "https://www.rcsb.org/structure/6WI1" }, { "id": "8G18", "database": "PDB", "url": "https://www.rcsb.org/structure/8G18" }, { "id": "8XLK", "database": "PDB", "url": "https://www.rcsb.org/structure/8XLK" }, { "id": "9JNN", "database": "PDB", "url": "https://www.rcsb.org/structure/9JNN" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q00960-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6WHU&bu=0&command=select+.D:688;+center+selection;+zoom+selection" }, "start_pos": 688, "start_aa": "Asn", "end_pos": 688, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn688", "evidence": [ { "id": "Q00960", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q00960#ptm_processing" }, { "id": "4PE5", "database": "PDB", "url": "https://www.rcsb.org/sequence/4PE5" }, { "id": "24876489", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24876489" }, { "id": "6WHU", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHU" }, { "id": "6WHV", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHV" }, { "id": "8XLK", "database": "PDB", "url": "https://www.rcsb.org/structure/8XLK" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q00960-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3JPW&bu=0&command=select+.A:74;+center+selection;+zoom+selection" }, "start_pos": 74, "start_aa": "Asn", "end_pos": 74, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn74", "evidence": [ { "id": "Q00960", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q00960#ptm_processing" }, { "id": "19910922", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19910922" }, { "id": "3QEL", "database": "PDB", "url": "https://www.rcsb.org/sequence/3QEL" }, { "id": "3JPW", "database": "PDB", "url": "https://www.rcsb.org/sequence/3JPW" }, { "id": "3QEM", "database": "PDB", "url": "https://www.rcsb.org/sequence/3QEM" }, { "id": "4PE5", "database": "PDB", "url": "https://www.rcsb.org/sequence/4PE5" }, { "id": "24876489", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24876489" }, { "id": "3JPY", "database": "PDB", "url": "https://www.rcsb.org/sequence/3JPY" }, { "id": "6CNA", "database": "PDB", "url": "https://www.rcsb.org/structure/6CNA" }, { "id": "6E7R", "database": "PDB", "url": "https://www.rcsb.org/structure/6E7R" }, { "id": "6E7S", "database": "PDB", "url": "https://www.rcsb.org/structure/6E7S" }, { "id": "6E7T", "database": "PDB", "url": "https://www.rcsb.org/structure/6E7T" }, { "id": "6E7U", "database": "PDB", "url": "https://www.rcsb.org/structure/6E7U" }, { "id": "6E7V", "database": "PDB", "url": "https://www.rcsb.org/structure/6E7V" }, { "id": "6E7W", "database": "PDB", "url": "https://www.rcsb.org/structure/6E7W" }, { "id": "6E7X", "database": "PDB", "url": "https://www.rcsb.org/structure/6E7X" }, { "id": "6WHU", "database": "PDB", "url": "https://www.rcsb.org/structure/6WHU" }, { "id": "8G18", "database": "PDB", "url": "https://www.rcsb.org/structure/8G18" }, { "id": "9JNN", "database": "PDB", "url": "https://www.rcsb.org/structure/9JNN" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q00960-1" } ], "record_id": "pubmed.24876489", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 8 }, { "field": "total_sites", "count": 8 }, { "field": "n_linked_sites", "count": 8 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 8 }, { "field": "exact_n_linked_sites", "count": 8 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 8 }, { "field": "total_sites", "count": 8 }, { "field": "n_linked_sites", "count": 8 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 8 }, { "field": "exact_n_linked_sites", "count": 8 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GluN2B-Containing NMDA Receptors Regulate AMPA Receptor Traffic through Anchoring of the Synaptic Proteasome.", "journal": "J. Neurosci.", "date": "2015", "authors": "Ferreira Joana S, Schmidt Jeannette, Rio Pedro, \u00c1guas Rodolfo, Rooyakkers Amanda, Li Ka Wan, Smit August B, Craig Ann Marie, Carvalho Ana Luisa", "reference": { "type": "PubMed", "id": "26041915", "url": "https://pubmed.ncbi.nlm.nih.gov/26041915" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P35438-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Mouse" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.26041915", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Endogenous BDNF augments NMDA receptor phosphorylation in the spinal cord via PLCgamma, PKC, and PI3K/Akt pathways during colitis.", "journal": "Journal of neuroinflammation", "date": "2015", "authors": "Liu M, Kay JC, Shen S, Qiao LY", "reference": { "type": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.26289587", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A Novel Binding Mode Reveals Two Distinct Classes of NMDA Receptor GluN2B-selective Antagonists.", "journal": "Mol. Pharmacol.", "date": "2016", "authors": "Stroebel David, Buhl Derek L, Knafels John D, Chanda Pranab K, Green Michael, Sciabola Simone, Mony Laetitia, Paoletti Pierre, Pandit Jayvardhan", "reference": { "type": "PubMed", "id": "26912815", "url": "https://pubmed.ncbi.nlm.nih.gov/26912815" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q13224-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2B", "gene_name": "GRIN2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01097-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2B", "gene_name": "Grin2b", "tax_name": "Mouse" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5EWJ&bu=0&command=select+.D:341;+center+selection;+zoom+selection" }, "start_pos": 341, "start_aa": "Asn", "end_pos": 341, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn341", "evidence": [ { "id": "Q13224", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q13224#ptm_processing" }, { "id": "26912815", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26912815" }, { "id": "7EU8", "database": "PDB", "url": "https://www.rcsb.org/sequence/7EU8" }, { "id": "34321660", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34321660" }, { "id": "5EWM", "database": "PDB", "url": "https://www.rcsb.org/sequence/5EWM" }, { "id": "5EWJ", "database": "PDB", "url": "https://www.rcsb.org/sequence/5EWJ" }, { "id": "5EWL", "database": "PDB", "url": "https://www.rcsb.org/sequence/5EWL" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q13224-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5EWJ&bu=0&command=select+.D:74;+center+selection;+zoom+selection" }, "start_pos": 74, "start_aa": "Asn", "end_pos": 74, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn74", "evidence": [ { "id": "Q13224", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q13224#ptm_processing" }, { "id": "26912815", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26912815" }, { "id": "5EWM", "database": "PDB", "url": "https://www.rcsb.org/sequence/5EWM" }, { "id": "5EWJ", "database": "PDB", "url": "https://www.rcsb.org/sequence/5EWJ" }, { "id": "5EWL", "database": "PDB", "url": "https://www.rcsb.org/sequence/5EWL" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q13224-1" } ], "record_id": "pubmed.26912815", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 2 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_n_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 2 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_n_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Activation of NMDA receptors and the mechanism of inhibition by ifenprodil.", "journal": "Nature", "date": "2016-06-02", "authors": "Tajima Nami, Karakas Erkan, Grant Timothy, Simorowski Noriko, Diaz-Avalos Ruben, Grigorieff Nikolaus, Furukawa Hiro", "reference": { "type": "PubMed", "id": "27135925", "url": "https://pubmed.ncbi.nlm.nih.gov/27135925" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00960-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2B", "gene_name": "Grin2b", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.27135925", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Synaptonuclear messenger PRR7 inhibits c-Jun ubiquitination and regulates NMDA-mediated excitotoxicity.", "journal": "EMBO J.", "date": "2016", "authors": "Kravchick DO, Karpova A, Hrdinka M, Lopez-Rojas J, Iacobas S, Carbonell AU, Iacobas DA, Kreutz MR, Jordan BA", "reference": { "type": "PubMed", "id": "27458189", "url": "https://pubmed.ncbi.nlm.nih.gov/27458189" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q3V0I2-1", "protein_name": "Proline-rich protein 7", "gene_name": "Prr7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z902-1", "protein_name": "F-box/WD repeat-containing protein 7", "gene_name": "Fbxw7", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q8TB68-1", "protein_name": "Proline-rich protein 7", "gene_name": "PRR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13224-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2B", "gene_name": "GRIN2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969H0-1", "protein_name": "F-box/WD repeat-containing protein 7", "gene_name": "FBXW7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05627-1", "protein_name": "Transcription factor Jun", "gene_name": "Jun", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P17325-1", "protein_name": "Transcription factor Jun", "gene_name": "Jun", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00960-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2B", "gene_name": "Grin2b", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P31016-1", "protein_name": "Disks large homolog 4", "gene_name": "Dlg4", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P0C6T3-1", "protein_name": "Proline-rich protein 7", "gene_name": "Prr7", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q05586-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "GRIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05412-1", "protein_name": "Transcription factor Jun", "gene_name": "JUN", "tax_name": "Human" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "mutagenesis": [ { "start_pos": 39, "end_pos": 47, "sequence_org": "KRRQEERLR", "sequence_mut": "AAAQEEALA", "comment": "Loss of nuclear localization and loss of apoptosis induction.", "evidence": [ { "database": "UniProtKB", "id": "P0C6T3", "url": "https://www.uniprot.org/uniprotkb/P0C6T3" }, { "database": "PubMed", "id": "27458189", "url": "https://pubmed.ncbi.nlm.nih.gov/27458189" } ], "uniprot_canonical_ac": "P0C6T3-1" } ], "record_id": "pubmed.27458189", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural Basis for Negative Allosteric Modulation of GluN2A-Containing NMDA Receptors.", "journal": "Neuron", "date": "2016", "authors": "Yi F, Mou TC, Dorsett KN, Volkmann RA, Menniti FS, Sprang SR, Hansen KB", "reference": { "type": "PubMed", "id": "27618671", "url": "https://pubmed.ncbi.nlm.nih.gov/27618671" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00959-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2A", "gene_name": "Grin2a", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.27618671", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Intrastriatal injection of ionomycin profoundly changes motor response to l-DOPA and its underlying molecular mechanisms.", "journal": "Neuroscience", "date": "2017", "authors": "Han C, Nie S, Chen G, Ma K, Xiong N, Zhang Z, Xu Y, Wang T, Papa SM, Cao X", "reference": { "type": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q6J4I0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 1B", "gene_name": "Ppp1r1b", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00959-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2A", "gene_name": "Grin2a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00960-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2B", "gene_name": "Grin2b", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" }, { "start_pos": 34, "end_pos": 34, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKA", "evidence": [ { "database": "UniProtKB", "id": "Q6J4I0", "url": "https://www.uniprot.org/uniprotkb/Q6J4I0" }, { "database": "iPTMnet", "id": "Q6J4I0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6J4I0" }, { "database": "PubMed", "id": "11578525", "url": "https://pubmed.ncbi.nlm.nih.gov/11578525" }, { "database": "PubMed", "id": "15066157", "url": "https://pubmed.ncbi.nlm.nih.gov/15066157" }, { "database": "PubMed", "id": "15287884", "url": "https://pubmed.ncbi.nlm.nih.gov/15287884" }, { "database": "PubMed", "id": "15536496", "url": "https://pubmed.ncbi.nlm.nih.gov/15536496" }, { "database": "PubMed", "id": "15686489", "url": "https://pubmed.ncbi.nlm.nih.gov/15686489" }, { "database": "PubMed", "id": "16029214", "url": "https://pubmed.ncbi.nlm.nih.gov/16029214" }, { "database": "PubMed", "id": "17125745", "url": "https://pubmed.ncbi.nlm.nih.gov/17125745" }, { "database": "PubMed", "id": "17499634", "url": "https://pubmed.ncbi.nlm.nih.gov/17499634" }, { "database": "PubMed", "id": "17884291", "url": "https://pubmed.ncbi.nlm.nih.gov/17884291" }, { "database": "PubMed", "id": "18985320", "url": "https://pubmed.ncbi.nlm.nih.gov/18985320" }, { "database": "PubMed", "id": "19460370", "url": "https://pubmed.ncbi.nlm.nih.gov/19460370" }, { "database": "PubMed", "id": "19818513", "url": "https://pubmed.ncbi.nlm.nih.gov/19818513" }, { "database": "PubMed", "id": "20384816", "url": "https://pubmed.ncbi.nlm.nih.gov/20384816" }, { "database": "PubMed", "id": "20731628", "url": "https://pubmed.ncbi.nlm.nih.gov/20731628" }, { "database": "PubMed", "id": "21376040", "url": "https://pubmed.ncbi.nlm.nih.gov/21376040" }, { "database": "PubMed", "id": "21843598", "url": "https://pubmed.ncbi.nlm.nih.gov/21843598" }, { "database": "PubMed", "id": "22143580", "url": "https://pubmed.ncbi.nlm.nih.gov/22143580" }, { "database": "PubMed", "id": "22192465", "url": "https://pubmed.ncbi.nlm.nih.gov/22192465" }, { "database": "PubMed", "id": "22427945", "url": "https://pubmed.ncbi.nlm.nih.gov/22427945" }, { "database": "PubMed", "id": "22877786", "url": "https://pubmed.ncbi.nlm.nih.gov/22877786" }, { "database": "PubMed", "id": "22952905", "url": "https://pubmed.ncbi.nlm.nih.gov/22952905" }, { "database": "PubMed", "id": "23313709", "url": "https://pubmed.ncbi.nlm.nih.gov/23313709" }, { "database": "PubMed", "id": "23385959", "url": "https://pubmed.ncbi.nlm.nih.gov/23385959" }, { "database": "PubMed", "id": "2557337", "url": "https://pubmed.ncbi.nlm.nih.gov/2557337" }, { "database": "PubMed", "id": "26893543", "url": "https://pubmed.ncbi.nlm.nih.gov/26893543" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "29093677", "url": "https://pubmed.ncbi.nlm.nih.gov/29093677" }, { "database": "PubMed", "id": "29354053", "url": "https://pubmed.ncbi.nlm.nih.gov/29354053" }, { "database": "PubMed", "id": "30181585", "url": "https://pubmed.ncbi.nlm.nih.gov/30181585" }, { "database": "PubMed", "id": "30338306", "url": "https://pubmed.ncbi.nlm.nih.gov/30338306" }, { "database": "PubMed", "id": "32718349", "url": "https://pubmed.ncbi.nlm.nih.gov/32718349" }, { "database": "PubMed", "id": "33530478", "url": "https://pubmed.ncbi.nlm.nih.gov/33530478" }, { "database": "PubMed", "id": "35581520", "url": "https://pubmed.ncbi.nlm.nih.gov/35581520" }, { "database": "PubMed", "id": "7931332", "url": "https://pubmed.ncbi.nlm.nih.gov/7931332" }, { "database": "PubMed", "id": "8226946", "url": "https://pubmed.ncbi.nlm.nih.gov/8226946" } ], "site_lbl": "Thr34", "uniprot_canonical_ac": "Q6J4I0-1" }, { "start_pos": 1325, "end_pos": 1325, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q00959", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00959" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" } ], "site_lbl": "Tyr1325", "uniprot_canonical_ac": "Q00959-1" }, { "start_pos": 1472, "end_pos": 1472, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q00960", "url": "https://www.uniprot.org/uniprotkb/Q00960" }, { "database": "iPTMnet", "id": "Q00960", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00960" }, { "database": "PubMed", "id": "11841566", "url": "https://pubmed.ncbi.nlm.nih.gov/11841566" }, { "database": "PubMed", "id": "12950452", "url": "https://pubmed.ncbi.nlm.nih.gov/12950452" }, { "database": "PubMed", "id": "18694808", "url": "https://pubmed.ncbi.nlm.nih.gov/18694808" }, { "database": "PubMed", "id": "18700282", "url": "https://pubmed.ncbi.nlm.nih.gov/18700282" }, { "database": "PubMed", "id": "19041929", "url": "https://pubmed.ncbi.nlm.nih.gov/19041929" }, { "database": "PubMed", "id": "19424850", "url": "https://pubmed.ncbi.nlm.nih.gov/19424850" }, { "database": "PubMed", "id": "19625512", "url": "https://pubmed.ncbi.nlm.nih.gov/19625512" }, { "database": "PubMed", "id": "20042082", "url": "https://pubmed.ncbi.nlm.nih.gov/20042082" }, { "database": "PubMed", "id": "20569495", "url": "https://pubmed.ncbi.nlm.nih.gov/20569495" }, { "database": "PubMed", "id": "21147838", "url": "https://pubmed.ncbi.nlm.nih.gov/21147838" }, { "database": "PubMed", "id": "21215796", "url": "https://pubmed.ncbi.nlm.nih.gov/21215796" }, { "database": "PubMed", "id": "21575722", "url": "https://pubmed.ncbi.nlm.nih.gov/21575722" }, { "database": "PubMed", "id": "22301064", "url": "https://pubmed.ncbi.nlm.nih.gov/22301064" }, { "database": "PubMed", "id": "22655064", "url": "https://pubmed.ncbi.nlm.nih.gov/22655064" }, { "database": "PubMed", "id": "22759925", "url": "https://pubmed.ncbi.nlm.nih.gov/22759925" }, { "database": "PubMed", "id": "22819974", "url": "https://pubmed.ncbi.nlm.nih.gov/22819974" }, { "database": "PubMed", "id": "23376245", "url": "https://pubmed.ncbi.nlm.nih.gov/23376245" }, { "database": "PubMed", "id": "23585298", "url": "https://pubmed.ncbi.nlm.nih.gov/23585298" }, { "database": "PubMed", "id": "23624776", "url": "https://pubmed.ncbi.nlm.nih.gov/23624776" }, { "database": "PubMed", "id": "23957788", "url": "https://pubmed.ncbi.nlm.nih.gov/23957788" }, { "database": "PubMed", "id": "24667898", "url": "https://pubmed.ncbi.nlm.nih.gov/24667898" }, { "database": "PubMed", "id": "24769228", "url": "https://pubmed.ncbi.nlm.nih.gov/24769228" }, { "database": "PubMed", "id": "25576965", "url": "https://pubmed.ncbi.nlm.nih.gov/25576965" }, { "database": "PubMed", "id": "26260438", "url": "https://pubmed.ncbi.nlm.nih.gov/26260438" }, { "database": "PubMed", "id": "26303340", "url": "https://pubmed.ncbi.nlm.nih.gov/26303340" }, { "database": "PubMed", "id": "26441533", "url": "https://pubmed.ncbi.nlm.nih.gov/26441533" }, { "database": "PubMed", "id": "26515544", "url": "https://pubmed.ncbi.nlm.nih.gov/26515544" }, { "database": "PubMed", "id": "27121999", "url": "https://pubmed.ncbi.nlm.nih.gov/27121999" }, { "database": "PubMed", "id": "27127657", "url": "https://pubmed.ncbi.nlm.nih.gov/27127657" }, { "database": "PubMed", "id": "27487820", "url": "https://pubmed.ncbi.nlm.nih.gov/27487820" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "28106041", "url": "https://pubmed.ncbi.nlm.nih.gov/28106041" }, { "database": "PubMed", "id": "28182698", "url": "https://pubmed.ncbi.nlm.nih.gov/28182698" }, { "database": "PubMed", "id": "28326942", "url": "https://pubmed.ncbi.nlm.nih.gov/28326942" }, { "database": "PubMed", "id": "29205377", "url": "https://pubmed.ncbi.nlm.nih.gov/29205377" }, { "database": "PubMed", "id": "29422059", "url": "https://pubmed.ncbi.nlm.nih.gov/29422059" }, { "database": "PubMed", "id": "30400767", "url": "https://pubmed.ncbi.nlm.nih.gov/30400767" }, { "database": "PubMed", "id": "30846840", "url": "https://pubmed.ncbi.nlm.nih.gov/30846840" }, { "database": "PubMed", "id": "31484535", "url": "https://pubmed.ncbi.nlm.nih.gov/31484535" }, { "database": "PubMed", "id": "32386416", "url": "https://pubmed.ncbi.nlm.nih.gov/32386416" }, { "database": "PubMed", "id": "33276724", "url": "https://pubmed.ncbi.nlm.nih.gov/33276724" }, { "database": "PubMed", "id": "33281565", "url": "https://pubmed.ncbi.nlm.nih.gov/33281565" }, { "database": "PubMed", "id": "33348808", "url": "https://pubmed.ncbi.nlm.nih.gov/33348808" }, { "database": "PubMed", "id": "33669305", "url": "https://pubmed.ncbi.nlm.nih.gov/33669305" } ], "site_lbl": "Tyr1472", "uniprot_canonical_ac": "Q00960-1" } ], "record_id": "pubmed.27771532", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Allosteric Interactions between NMDA Receptor Subunits Shape the Developmental Shift in Channel Properties.", "journal": "Neuron", "date": "2017", "authors": "Sun W, Hansen KB, Jahr CE", "reference": { "type": "PubMed", "id": "28384476", "url": "https://pubmed.ncbi.nlm.nih.gov/28384476" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00959-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2A", "gene_name": "Grin2a", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.28384476", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel Mode of Antagonist Binding in NMDA Receptors Revealed by the Crystal Structure of the GluN1-GluN2A Ligand-Binding Domain Complexed to NVP-AAM077.", "journal": "Molecular pharmacology", "date": "2017-07", "authors": "Romero-Hernandez Annabel, Furukawa Hiro", "reference": { "type": "PubMed", "id": "28468946", "url": "https://pubmed.ncbi.nlm.nih.gov/28468946" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00959-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2A", "gene_name": "Grin2a", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.28468946", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Spinal Nitric Oxide Synthase Type II Increases Neurosteroid-metabolizing Cytochrome P450c17 Expression in a Rodent Model of Neuropathic Pain.", "journal": "Experimental neurobiology", "date": "2019-08-31", "authors": "Choi Sheu-Ran, Beitz Alvin J, Lee Jang-Hern", "reference": { "type": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "phosphorylation": [ { "start_pos": 896, "end_pos": 896, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "10643790", "url": "https://pubmed.ncbi.nlm.nih.gov/10643790" }, { "database": "PubMed", "id": "10648644", "url": "https://pubmed.ncbi.nlm.nih.gov/10648644" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15174082", "url": "https://pubmed.ncbi.nlm.nih.gov/15174082" }, { "database": "PubMed", "id": "15233747", "url": "https://pubmed.ncbi.nlm.nih.gov/15233747" }, { "database": "PubMed", "id": "15312791", "url": "https://pubmed.ncbi.nlm.nih.gov/15312791" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "20074623", "url": "https://pubmed.ncbi.nlm.nih.gov/20074623" }, { "database": "PubMed", "id": "21170295", "url": "https://pubmed.ncbi.nlm.nih.gov/21170295" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "26289587", "url": "https://pubmed.ncbi.nlm.nih.gov/26289587" }, { "database": "PubMed", "id": "27771532", "url": "https://pubmed.ncbi.nlm.nih.gov/27771532" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" } ], "site_lbl": "Ser896", "uniprot_canonical_ac": "P35439-1" }, { "start_pos": 897, "end_pos": 897, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" }, { "database": "iPTMnet", "id": "P35439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35439" }, { "database": "PubMed", "id": "12435416", "url": "https://pubmed.ncbi.nlm.nih.gov/12435416" }, { "database": "PubMed", "id": "12457264", "url": "https://pubmed.ncbi.nlm.nih.gov/12457264" }, { "database": "PubMed", "id": "15081590", "url": "https://pubmed.ncbi.nlm.nih.gov/15081590" }, { "database": "PubMed", "id": "15379998", "url": "https://pubmed.ncbi.nlm.nih.gov/15379998" }, { "database": "PubMed", "id": "16300895", "url": "https://pubmed.ncbi.nlm.nih.gov/16300895" }, { "database": "PubMed", "id": "16571972", "url": "https://pubmed.ncbi.nlm.nih.gov/16571972" }, { "database": "PubMed", "id": "16772733", "url": "https://pubmed.ncbi.nlm.nih.gov/16772733" }, { "database": "PubMed", "id": "18437031", "url": "https://pubmed.ncbi.nlm.nih.gov/18437031" }, { "database": "PubMed", "id": "21038693", "url": "https://pubmed.ncbi.nlm.nih.gov/21038693" }, { "database": "PubMed", "id": "23251573", "url": "https://pubmed.ncbi.nlm.nih.gov/23251573" }, { "database": "PubMed", "id": "23372792", "url": "https://pubmed.ncbi.nlm.nih.gov/23372792" }, { "database": "PubMed", "id": "24184018", "url": "https://pubmed.ncbi.nlm.nih.gov/24184018" }, { "database": "PubMed", "id": "31495080", "url": "https://pubmed.ncbi.nlm.nih.gov/31495080" }, { "database": "PubMed", "id": "11588171", "url": "https://pubmed.ncbi.nlm.nih.gov/11588171" } ], "site_lbl": "Ser897", "uniprot_canonical_ac": "P35439-1" } ], "record_id": "pubmed.31495080", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The pathogenic N650K variant in the GluN1 subunit regulates the trafficking, conductance, and pharmacological properties of NMDA receptors.", "journal": "Neuropharmacology", "date": "2023-01-01", "authors": "Kolcheva Marharyta, Ladislav Marek, Netolicky Jakub, Kortus Stepan, Rehakova Kristyna, Krausova Barbora Hrcka, Hemelikova Katarina, Misiachna Anna, Kadkova Anna, Klima Martin, Chalupska Dominika, Horak Martin", "reference": { "type": "PubMed", "id": "36341805", "url": "https://pubmed.ncbi.nlm.nih.gov/36341805" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.36341805", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reduced Expression of the Htr2a, Grin1, and Bdnf Genes and Cognitive Inflexibility in a Model of High Compulsive Rats.", "journal": "Molecular neurobiology", "date": "2023-07-31", "authors": "Prados-Pardo \u00c1ngeles, Mart\u00edn-Gonz\u00e1lez Elena, Mora Santiago, Mart\u00edn Carlos, Olmedo-C\u00f3rdoba Manuela, P\u00e9rez-Fernandez Cristian, S\u00e1nchez-Santed Fernando, Moreno-Montoya Margarita", "reference": { "type": "PubMed", "id": "37523044", "url": "https://pubmed.ncbi.nlm.nih.gov/37523044" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.37523044", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular mechanism of ligand gating and opening of NMDA receptor.", "journal": "Nature", "date": "2024-08", "authors": "Chou Tsung-Han, Epstein Max, Fritzemeier Russell G, Akins Nicholas S, Paladugu Srinu, Ullman Elijah Z, Liotta Dennis C, Traynelis Stephen F, Furukawa Hiro", "reference": { "type": "PubMed", "id": "39085540", "url": "https://pubmed.ncbi.nlm.nih.gov/39085540" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q00960-1", "protein_name": "Glutamate receptor ionotropic, NMDA 2B", "gene_name": "Grin2b", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.39085540", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zinc potentiates agonist-induced currents at certain splice variants of the NMDA receptor.", "journal": "Neuron", "date": "1993", "authors": "Hollmann M, Boulter J, Maron C, Beasley L, Sullivan J, Pecht G, Heinemann S", "reference": { "type": "PubMed", "id": "7684237", "url": "https://pubmed.ncbi.nlm.nih.gov/7684237" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.7684237", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and analysis of the 5' flanking sequence of the rat N-methyl-D-aspartate receptor 1 (NMDAR1) gene.", "journal": "Biochim. Biophys. Acta", "date": "1993", "authors": "Bai G, Kusiak J W", "reference": { "type": "PubMed", "id": "8399301", "url": "https://pubmed.ncbi.nlm.nih.gov/8399301" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35439-1", "protein_name": "Glutamate receptor ionotropic, NMDA 1", "gene_name": "Grin1", "tax_name": "Rat" } ], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35439", "url": "https://www.uniprot.org/uniprotkb/P35439" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "record_id": "pubmed.8399301", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]