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domain-containing gene, Cbfa3, and localization of the human homolog, CBFA3, to chromosome 1p35-pter.", "journal": "Genomics", "date": "1995", "authors": "Wijmenga C, Speck N A, Dracopoli N C, Hofker M H, Liu P, Collins F S", "reference": { "type": "PubMed", "id": "7607690", "url": "https://pubmed.ncbi.nlm.nih.gov/7607690" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q64131-1", "protein_name": "Runt-related transcription factor 3", "gene_name": "Runx3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q13761-1", "protein_name": "Runt-related transcription factor 3", "gene_name": "RUNX3", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q64131", "url": "https://www.uniprot.org/uniprotkb/Q64131" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.7607690", "abstract": "", "glycosylation": [], 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J. Cancer Res.", "date": "2000", "authors": "Harada K, Yamada A, Mine T, Kawagoe N, Takasu H, Itoh K", "reference": { "type": "PubMed", "id": "10761712", "url": "https://pubmed.ncbi.nlm.nih.gov/10761712" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JLI8-1", "protein_name": "Spliceosome associated factor 3, U4/U6 recycling protein", "gene_name": "Sart3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JLI8", "url": "https://www.uniprot.org/uniprotkb/Q9JLI8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10761712", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Targeting of U4/U6 small nuclear RNP assembly factor SART3/p110 to Cajal bodies.", "journal": "J. Cell Biol.", "date": "2003", "authors": "Stanek D, Rader SD, Klingauf M, Neugebauer KM", "reference": { "type": "PubMed", "id": "12578909", "url": "https://pubmed.ncbi.nlm.nih.gov/12578909" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JLI8-1", "protein_name": "Spliceosome associated factor 3, U4/U6 recycling protein", "gene_name": "Sart3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q15020-1", "protein_name": "Spliceosome associated factor 3, U4/U6 recycling protein", "gene_name": "SART3", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JLI8", "url": "https://www.uniprot.org/uniprotkb/Q9JLI8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12578909", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Barbara A, Veenstra GJ, Xu G, Kaiser UB, Liu XS, Sugrue SP, He X, Min J, Kato Y, Shi YG", "reference": { "type": "PubMed", "id": "23217707", "url": "https://pubmed.ncbi.nlm.nih.gov/23217707" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BG87-1", "protein_name": "Methylcytosine dioxygenase TET3", "gene_name": "Tet3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O43151-1", "protein_name": "Methylcytosine dioxygenase TET3", "gene_name": "TET3", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BG87", "url": "https://www.uniprot.org/uniprotkb/Q8BG87" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23217707", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Intrinsic and extrinsic connections of Tet3 dioxygenase with CXXC zinc finger modules.", "journal": "PloS one", "date": "2013", "authors": "Liu Nan, Wang Mengxi, Deng Wen, Schmidt Christine S, Qin Weihua, Leonhardt Heinrich, Spada Fabio", "reference": { "type": "PubMed", "id": "23690950", "url": "https://pubmed.ncbi.nlm.nih.gov/23690950" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BG87-1", "protein_name": "Methylcytosine dioxygenase TET3", "gene_name": "Tet3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BG87", "url": "https://www.uniprot.org/uniprotkb/Q8BG87" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23690950", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CRL4 complex regulates mammalian oocyte survival and reprogramming by activation of TET proteins.", "journal": "Science", "date": "2013", "authors": "Yu C, Zhang YL, Pan WW, Li XM, Wang ZW, Ge ZJ, Zhou JJ, Cang Y, Tong C, Sun QY, Fan HY", "reference": { "type": "PubMed", "id": "24357321", "url": "https://pubmed.ncbi.nlm.nih.gov/24357321" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BG87-1", "protein_name": "Methylcytosine dioxygenase TET3", "gene_name": "Tet3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2A432-1", "protein_name": "Cullin-4B", "gene_name": "Cul4b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O43151-1", "protein_name": "Methylcytosine dioxygenase TET3", "gene_name": "TET3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6N021-1", "protein_name": "Methylcytosine dioxygenase TET2", "gene_name": "TET2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62878-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "Rbx1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y4B6-1", "protein_name": "DDB1- and CUL4-associated factor 1", "gene_name": "DCAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4JK59-1", "protein_name": "Methylcytosine dioxygenase TET2", "gene_name": "Tet2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U1J4-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "Ddb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TCH7-1", "protein_name": "Cullin-4A", "gene_name": "Cul4a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q07105-1", "protein_name": "Growth/differentiation factor 9", "gene_name": "Gdf9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URK3-1", "protein_name": "Methylcytosine dioxygenase TET1", "gene_name": "Tet1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80TR8-1", "protein_name": "DDB1- and CUL4-associated factor 1", "gene_name": "Dcaf1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NFU7-1", "protein_name": "Methylcytosine dioxygenase TET1", "gene_name": "TET1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BG87", "url": "https://www.uniprot.org/uniprotkb/Q8BG87" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 1247, "end_pos": 1247, "sequence_org": "R", "sequence_mut": "A", "comment": "Loss of interaction with DDB1, no effect on interaction with TET3; when associated with A-1283.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y4B6", "url": "https://www.uniprot.org/uniprotkb/Q9Y4B6" }, { "database": "PubMed", "id": "24357321", "url": "https://pubmed.ncbi.nlm.nih.gov/24357321" } ], "uniprot_canonical_ac": "Q9Y4B6-1" }, { "start_pos": 1283, "end_pos": 1283, "sequence_org": "R", "sequence_mut": "A", "comment": "Loss of interaction with DDB1, no effect on interaction with TET3; when associated with A-1247.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y4B6", "url": "https://www.uniprot.org/uniprotkb/Q9Y4B6" }, { "database": "PubMed", "id": "24357321", "url": "https://pubmed.ncbi.nlm.nih.gov/24357321" } ], "uniprot_canonical_ac": "Q9Y4B6-1" }, { "start_pos": 1246, "end_pos": 1246, "sequence_org": "R", "sequence_mut": "A", "comment": "Loss of interaction with DDB1 and strong decrease in TET2 monoubiquitination; when associated with A-1282.", "evidence": [ { "database": "UniProtKB", "id": "Q80TR8", "url": "https://www.uniprot.org/uniprotkb/Q80TR8" }, { "database": "PubMed", "id": "24357321", "url": "https://pubmed.ncbi.nlm.nih.gov/24357321" } ], "uniprot_canonical_ac": "Q80TR8-1" }, { "start_pos": 1282, "end_pos": 1282, "sequence_org": "R", "sequence_mut": "A", "comment": "Loss of interaction with DDB1 and strong decrease in TET2 monoubiquitination; when associated with A-1246.", "evidence": [ { "database": "UniProtKB", "id": "Q80TR8", "url": "https://www.uniprot.org/uniprotkb/Q80TR8" }, { "database": "PubMed", "id": "24357321", "url": "https://pubmed.ncbi.nlm.nih.gov/24357321" } ], "uniprot_canonical_ac": "Q80TR8-1" } ], "record_id": "pubmed.24357321", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CRL4(VprBP) E3 ligase promotes monoubiquitylation and chromatin binding of TET dioxygenases.", "journal": "Molecular cell", "date": "2015", "authors": "Nakagawa T, Lv L, Nakagawa M, Yu Y, Yu C, D'Alessio AC, Nakayama K, Fan HY, Chen X, Xiong Y", "reference": { "type": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BG87-1", "protein_name": "Methylcytosine dioxygenase TET3", "gene_name": "Tet3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O43151-1", "protein_name": "Methylcytosine dioxygenase TET3", "gene_name": "TET3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6N021-1", "protein_name": "Methylcytosine dioxygenase TET2", "gene_name": "TET2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4B6-1", "protein_name": "DDB1- and CUL4-associated factor 1", "gene_name": "DCAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4JK59-1", "protein_name": "Methylcytosine dioxygenase TET2", "gene_name": "Tet2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URK3-1", "protein_name": "Methylcytosine dioxygenase TET1", "gene_name": "Tet1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80TR8-1", "protein_name": "DDB1- and CUL4-associated factor 1", "gene_name": "Dcaf1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NFU7-1", "protein_name": "Methylcytosine dioxygenase TET1", "gene_name": "TET1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BG87", "url": "https://www.uniprot.org/uniprotkb/Q8BG87" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 1002, "end_pos": 1002, "sequence_org": "K", "sequence_mut": "E", "comment": "Strongly decreases ubiquitination, loss of DNA-binding and of 5-methylcytosine demethylase activity in vivo. Loss of nuclear localization, becomes mostly cytoplasmic.", "evidence": [ { "database": "UniProtKB", "id": "Q8BG87", "url": "https://www.uniprot.org/uniprotkb/Q8BG87" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q8BG87-1" }, { "start_pos": 1002, "end_pos": 1002, "sequence_org": "K", "sequence_mut": "N", "comment": "Strongly decreases ubiquitination, loss of DNA-binding and of 5-methylcytosine demethylase activity in vivo. Loss of nuclear localization, becomes mostly cytoplasmic.", "evidence": [ { "database": "UniProtKB", "id": "Q8BG87", "url": "https://www.uniprot.org/uniprotkb/Q8BG87" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q8BG87-1" }, { "start_pos": 1292, "end_pos": 1292, "sequence_org": "S", "sequence_mut": "R", "comment": "No effect on interaction with DCAF1, monoubiquitination, nor on 5-methylcytosine demethylase activity in vivo, when tested in a heterologous system.", "evidence": [ { "database": "UniProtKB", "id": "Q6N021", "url": "https://www.uniprot.org/uniprotkb/Q6N021" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q6N021-1" }, { "start_pos": 1298, "end_pos": 1298, "sequence_org": "C", "sequence_mut": "Y", "comment": "Loss of monoubiquitination and of 5-methylcytosine demethylase activity in vivo. No effect on interaction with DCAF1, when tested in a heterologous system.", "evidence": [ { "database": "UniProtKB", "id": "Q6N021", "url": "https://www.uniprot.org/uniprotkb/Q6N021" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q6N021-1" }, { "start_pos": 1300, "end_pos": 1300, "sequence_org": "F", "sequence_mut": "S", "comment": "Loss of interaction with DCAF1, monoubiquitination and of 5-methylcytosine demethylase activity in vivo, when tested in a heterologous system.", "evidence": [ { "database": "UniProtKB", "id": "Q6N021", "url": "https://www.uniprot.org/uniprotkb/Q6N021" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q6N021-1" }, { "start_pos": 1200, "end_pos": 1200, "sequence_org": "F", "sequence_mut": "L", "comment": "No effect on interaction with DCAF1, monoubiquitination, nor on 5-methylcytosine demethylase activity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "Q4JK59", "url": "https://www.uniprot.org/uniprotkb/Q4JK59" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q4JK59-1" }, { "start_pos": 1205, "end_pos": 1205, "sequence_org": "S", "sequence_mut": "R", "comment": "No effect on interaction with DCAF1, monoubiquitination, nor on 5-methylcytosine demethylase activity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "Q4JK59", "url": "https://www.uniprot.org/uniprotkb/Q4JK59" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q4JK59-1" }, { "start_pos": 1211, "end_pos": 1211, "sequence_org": "C", "sequence_mut": "Y", "comment": "Loss of monoubiquitination and of 5-methylcytosine demethylase activity in vivo. No effect on interaction with DCAF1.", "evidence": [ { "database": "UniProtKB", "id": "Q4JK59", "url": "https://www.uniprot.org/uniprotkb/Q4JK59" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q4JK59-1" }, { "start_pos": 1212, "end_pos": 1212, "sequence_org": "K", "sequence_mut": "E", "comment": "Strongly reduces ubiquitination, loss of DNA-binding, loss of 5-methylcytosine demethylase activity in vivo. Does not affect nuclear localization, nor interaction with DCAF1.", "evidence": [ { "database": "UniProtKB", "id": "Q4JK59", "url": "https://www.uniprot.org/uniprotkb/Q4JK59" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q4JK59-1" }, { "start_pos": 1212, "end_pos": 1212, "sequence_org": "K", "sequence_mut": "N", "comment": "Strongly reduces ubiquitination, loss of DNA-binding, loss of 5-methylcytosine demethylase activity in vivo. Does not affect nuclear localization, nor interaction with DCAF1.", "evidence": [ { "database": "UniProtKB", "id": "Q4JK59", "url": "https://www.uniprot.org/uniprotkb/Q4JK59" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q4JK59-1" }, { "start_pos": 1212, "end_pos": 1212, "sequence_org": "K", "sequence_mut": "R", "comment": "Strongly reduces ubiquitination.", "evidence": [ { "database": "UniProtKB", "id": "Q4JK59", "url": "https://www.uniprot.org/uniprotkb/Q4JK59" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q4JK59-1" }, { "start_pos": 1213, "end_pos": 1213, "sequence_org": "F", "sequence_mut": "S", "comment": "Loss of interaction with DCAF1, monoubiquitination and of 5-methylcytosine demethylase activity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "Q4JK59", "url": "https://www.uniprot.org/uniprotkb/Q4JK59" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q4JK59-1" }, { "start_pos": 1215, "end_pos": 1215, "sequence_org": "R", "sequence_mut": "G", "comment": "Loss of interaction with DCAF1, monoubiquitination and of 5-methylcytosine demethylase activity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "Q4JK59", "url": "https://www.uniprot.org/uniprotkb/Q4JK59" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q4JK59-1" }, { "start_pos": 1231, "end_pos": 1231, "sequence_org": "E", "sequence_mut": "G", "comment": "No effect on interaction with DCAF1, monoubiquitination, nor on 5-methylcytosine demethylase activity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "Q4JK59", "url": "https://www.uniprot.org/uniprotkb/Q4JK59" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q4JK59-1" }, { "start_pos": 1295, "end_pos": 1295, "sequence_org": "H", "sequence_mut": "Y", "comment": "Loss of enzyme activity, no effect on interaction with DCAF1; when associated with A-1297.", "evidence": [ { "database": "UniProtKB", "id": "Q4JK59", "url": "https://www.uniprot.org/uniprotkb/Q4JK59" }, { "database": "PubMed", "id": "20639862", "url": "https://pubmed.ncbi.nlm.nih.gov/20639862" }, { "database": "PubMed", "id": "21778364", "url": "https://pubmed.ncbi.nlm.nih.gov/21778364" }, { "database": "PubMed", "id": "21817016", "url": "https://pubmed.ncbi.nlm.nih.gov/21817016" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q4JK59-1" }, { "start_pos": 1297, "end_pos": 1297, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of enzyme activity, no effect on interaction with DCAF1; when associated with Y-1295.", "evidence": [ { "database": "UniProtKB", "id": "Q4JK59", "url": "https://www.uniprot.org/uniprotkb/Q4JK59" }, { "database": "PubMed", "id": "21778364", "url": "https://pubmed.ncbi.nlm.nih.gov/21778364" }, { "database": "PubMed", "id": "21817016", "url": "https://pubmed.ncbi.nlm.nih.gov/21817016" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" }, { "database": "PubMed", "id": "20639862", "url": "https://pubmed.ncbi.nlm.nih.gov/20639862" } ], "uniprot_canonical_ac": "Q4JK59-1" }, { "start_pos": 1537, "end_pos": 1537, "sequence_org": "K", "sequence_mut": "E", "comment": "Decreased levels of ubiquitination in isoform 2; loss of isoform 2 localization to sites of ongoing DNA replication in heterochromatic regions; does not affect interaction with CRL4(VprBP) ubiquitin ligase complex. Loss of DNA-binding and of 5-methylcytosine demethylase activity in vivo. Does not affect nuclear localization.", "evidence": [ { "database": "UniProtKB", "id": "Q3URK3", "url": "https://www.uniprot.org/uniprotkb/Q3URK3" }, { "database": "PubMed", "id": "36056023", "url": "https://pubmed.ncbi.nlm.nih.gov/36056023" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q3URK3-1" }, { "start_pos": 1537, "end_pos": 1537, "sequence_org": "K", "sequence_mut": "N", "comment": "Strongly reduces ubiquitination, loss of DNA-binding and of 5-methylcytosine demethylase activity in vivo. Does not affect nuclear localization.", "evidence": [ { "database": "UniProtKB", "id": "Q3URK3", "url": "https://www.uniprot.org/uniprotkb/Q3URK3" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" } ], "uniprot_canonical_ac": "Q3URK3-1" }, { "start_pos": 1652, "end_pos": 1652, "sequence_org": "H", "sequence_mut": "Y", "comment": "Loss of catalytic activity; when associated with A-1654. Does not affect chromocenter clustering; when associated with A-1654. Does not affect interaction with DCAF1; when associated with A-1654. In isoform 2, does not affect localization to heterochromatin in late S-phase; when associated with A-1654.", "evidence": [ { "database": "UniProtKB", "id": "Q3URK3", "url": "https://www.uniprot.org/uniprotkb/Q3URK3" }, { "database": "PubMed", "id": "20639862", "url": "https://pubmed.ncbi.nlm.nih.gov/20639862" }, { "database": "PubMed", "id": "21778364", "url": "https://pubmed.ncbi.nlm.nih.gov/21778364" }, { "database": "PubMed", "id": "25557551", "url": "https://pubmed.ncbi.nlm.nih.gov/25557551" }, { "database": "PubMed", "id": "34166371", "url": "https://pubmed.ncbi.nlm.nih.gov/34166371" } ], "uniprot_canonical_ac": "Q3URK3-1" }, { "start_pos": 1654, "end_pos": 1654, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of catalytic activity; when associated with Y-1652. Does not affect chromocenter clustering; when associated with A-1654; when associated with Y-1652. Does not affect interaction with DCAF1; when associated with Y-1652. 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of TET proteins is regulated via O-GlcNAcylation by the O-linked N-acetylglucosamine transferase (OGT).", "journal": "The Journal of biological chemistry", "date": "2015", "authors": "Bauer C, Gobel K, Nagaraj N, Colantuoni C, Wang M, Muller U, Kremmer E, Rottach A, Leonhardt H", "reference": { "type": "PubMed", "id": "25568311", "url": "https://pubmed.ncbi.nlm.nih.gov/25568311" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BG87-1", "protein_name": 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Cell", "date": "2008", "authors": "Swanson Kenneth D, Tang Yong, Ceccarelli Derek F, Poy Florence, Sliwa Jan P, Neel Benjamin G, Eck Michael J", "reference": { "type": "PubMed", "id": "19026786", "url": "https://pubmed.ncbi.nlm.nih.gov/19026786" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3UND0-1", "protein_name": "Src kinase-associated phosphoprotein 2", "gene_name": "Skap2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3UND0", "url": "https://www.uniprot.org/uniprotkb/Q3UND0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19026786", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Vis.", "date": "2005", "authors": "van den Hurk JA, Rashbass P, Roepman R, Davis J, Voesenek KE, Arends ML, Zonneveld MN, van Roekel MH, Cameron K, Rohrschneider K, Heckenlively JR, Koenekoop RK, Hoyng CB, Cremers FP, den Hollander AI", "reference": { "type": "PubMed", "id": "15851977", "url": "https://pubmed.ncbi.nlm.nih.gov/15851977" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80YA8-1", "protein_name": "Protein crumbs homolog 2", "gene_name": "Crb2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5IJ48-1", "protein_name": "Protein crumbs homolog 2", "gene_name": "CRB2", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q80YA8", "url": "https://www.uniprot.org/uniprotkb/Q80YA8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15851977", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "FERM protein EPB41L5 is a novel member of the mammalian CRB-MPP5 polarity complex.", "journal": "Exp. Cell Res.", "date": "2007", "authors": "Gosens I, Sessa A, den Hollander AI, Letteboer SJ, Belloni V, Arends ML, Le Bivic A, Cremers FP, Broccoli V, Roepman R", "reference": { "type": "PubMed", "id": "17920587", "url": "https://pubmed.ncbi.nlm.nih.gov/17920587" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80YA8-1", "protein_name": "Protein crumbs homolog 2", "gene_name": "Crb2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q58CU2-1", "protein_name": "Band 4.1-like protein 5", "gene_name": "EPB41L5", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "P82279-1", "protein_name": "Protein crumbs homolog 1", "gene_name": "CRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5IJ48-1", "protein_name": "Protein crumbs homolog 2", "gene_name": "CRB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF7-1", "protein_name": "Protein crumbs homolog 3", "gene_name": "CRB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5FVG2-1", "protein_name": "Band 4.1-like protein 5", "gene_name": "Epb41l5", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q8QZT4-1", "protein_name": "Protein crumbs homolog 3", "gene_name": "Crb3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BGS1-1", "protein_name": "Band 4.1-like protein 5", "gene_name": "Epb41l5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N3R9-1", "protein_name": "Protein PALS1", "gene_name": "PALS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCM4-1", "protein_name": "Band 4.1-like protein 5", "gene_name": "EPB41L5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JLB2-1", "protein_name": "Protein PALS1", "gene_name": "Pals1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q80YA8", "url": "https://www.uniprot.org/uniprotkb/Q80YA8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 1377, "end_pos": 1379, "sequence_org": "GTY", "sequence_mut": "", "comment": "Abolishes interaction with EPB41L5. 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Dyn.", "date": "2011", "authors": "Xiao Zhijie, Patrakka Jaakko, Nukui Masatoshi, Chi Lijun, Niu Dadi, Betsholtz Christer, Pikkarainen Timo, Pikkarainan Timo, Vainio Seppo, Tryggvason Karl", "reference": { "type": "PubMed", "id": "22072575", "url": "https://pubmed.ncbi.nlm.nih.gov/22072575" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80YA8-1", "protein_name": "Protein crumbs homolog 2", "gene_name": "Crb2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q80YA8", "url": "https://www.uniprot.org/uniprotkb/Q80YA8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22072575", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": 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Biol.", "date": "2001", "authors": "Ghose R, Shekhtman A, Goger M J, Ji H, Cowburn D", "reference": { "type": "PubMed", "id": "11685249", "url": "https://pubmed.ncbi.nlm.nih.gov/11685249" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29352-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 22", "gene_name": "Ptpn22", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P41241-1", "protein_name": "Tyrosine-protein kinase CSK", "gene_name": "Csk", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P29352", "url": "https://www.uniprot.org/uniprotkb/P29352" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11685249", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of hematopoietic intracellular protein tyrosine phosphatases: description of a phosphatase containing an SH2 domain and another enriched in proline-, glutamic acid-, serine-, and threonine-rich sequences.", "journal": "Mol. 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Biol.", "date": "1992", "authors": "Matthews RJ, Bowne DB, Flores E, Thomas ML", "reference": { "type": "PubMed", "id": "1373816", "url": "https://pubmed.ncbi.nlm.nih.gov/1373816" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29352-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 22", "gene_name": "Ptpn22", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P29351-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "Ptpn6", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P29352", "url": "https://www.uniprot.org/uniprotkb/P29352" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.1373816", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Leupaxin binds to PEST domain tyrosine phosphatase PEP.", "journal": "Mol. 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Biochem.", "date": "2005", "authors": "Watanabe N, Amano N, Ishizuka H, Mashima K", "reference": { "type": "PubMed", "id": "15786712", "url": "https://pubmed.ncbi.nlm.nih.gov/15786712" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29352-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 22", "gene_name": "Ptpn22", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P35831-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 12", "gene_name": "Ptpn12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99N69-1", "protein_name": "Leupaxin", "gene_name": "Lpxn", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P29352", "url": "https://www.uniprot.org/uniprotkb/P29352" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15786712", "abstract": "", "glycosylation": [], 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p65/IKK-\u03b2 signal pathway].", "journal": "Xi bao yu fen zi mian yi xue za zhi = Chinese journal of cellular and molecular immunology", "date": "2024-02", "authors": "Mao Yan, Yu Jiali, Yuan Jing, DA Jingjing, Yu Fuxun, Zha Yan", "reference": { "type": "PubMed", "id": "38284254", "url": "https://pubmed.ncbi.nlm.nih.gov/38284254" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18608-1", "protein_name": "Non-histone chromosomal protein HMG-14", "gene_name": "Hmgn1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P18608", "url": "https://www.uniprot.org/uniprotkb/P18608" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38284254", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A mitogen- and anisomycin-stimulated kinase phosphorylates HMG-14 in its basic amino-terminal domain in vivo and on isolated mononucleosomes.", "journal": "The EMBO journal", "date": "1994", "authors": "Barratt MJ, Hazzalin CA, Zhelev N, Mahadevan LC", "reference": { "type": "PubMed", "id": "7925294", "url": "https://pubmed.ncbi.nlm.nih.gov/7925294" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18608-1", "protein_name": "Non-histone chromosomal protein HMG-14", "gene_name": "Hmgn1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P18608", "url": "https://www.uniprot.org/uniprotkb/P18608" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "phosphorylation": [ { "start_pos": 7, "end_pos": 7, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by RPS6KA5", "evidence": [ { "database": "UniProtKB", "id": "P18608", "url": "https://www.uniprot.org/uniprotkb/P18608" }, { "database": "iPTMnet", "id": "P18608", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18608" }, { "database": "PubMed", "id": "7925294", "url": "https://pubmed.ncbi.nlm.nih.gov/7925294" }, { "database": "PubMed", "id": "15327773", "url": "https://pubmed.ncbi.nlm.nih.gov/15327773" } ], "site_lbl": 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