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eukaryotic 2-oxoglutarate dehydrogenase complex.", "journal": "Open Biol.", "date": "2023", "authors": "Hevler Johannes F, Albanese Pascal, Cabrera-Orefice Alfredo, Potter Alisa, Jankevics Andris, Misic Jelena, Scheltema Richard A, Brandt Ulrich, Arnold Susanne, Heck Albert J R", "reference": { "type": "PubMed", "id": "36854377", "url": "https://pubmed.ncbi.nlm.nih.gov/36854377" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60597-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "Ogdh", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D2G2-1", "protein_name": "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial", "gene_name": "Dlst", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P11179-1", "protein_name": "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial", "gene_name": "DLST", 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"Exp. Cell Res.", "date": "2001", "authors": "Salama R H, Muramatsu H, Zou K, Inui T, Kimura T, Muramatsu T", "reference": { "type": "PubMed", "id": "11597123", "url": "https://pubmed.ncbi.nlm.nih.gov/11597123" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P14206-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "Rpsa", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P14206", "url": "https://www.uniprot.org/uniprotkb/P14206" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11597123", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Biophys. Res. Commun.", "date": "1996", "authors": "Sato M, Kinoshita K, Kaneda Y, Saeki Y, Iwamatsu A, Tanaka K", "reference": { "type": "PubMed", "id": "8954992", "url": "https://pubmed.ncbi.nlm.nih.gov/8954992" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P14206-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "Rpsa", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P14206", "url": "https://www.uniprot.org/uniprotkb/P14206" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8954992", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Res.", "date": "2007", "authors": "Veroni Caterina, Grasso Margherita, Macchia Gianfranco, Ramoni Carlo, Ceccarini Marina, Petrucci Tamara C, Macioce Pompeo", "reference": { "type": "PubMed", "id": "17265465", "url": "https://pubmed.ncbi.nlm.nih.gov/17265465" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88998-1", "protein_name": "Noelin", "gene_name": "Olfm1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84060-1", "protein_name": "Dystrobrevin beta", "gene_name": "Dtnb", "tax_name": "Rat" }, { "uniprot_canonical_ac": "O70585-1", "protein_name": "Dystrobrevin beta", "gene_name": "Dtnb", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O88998", "url": "https://www.uniprot.org/uniprotkb/O88998" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17265465", "abstract": "", "glycosylation": [], 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J. Biochem.", "date": "1989", "authors": "Hornig H, Fischer U, Costas M, Rauh A, L\u00fchrmann R", "reference": { "type": "PubMed", "id": "2525092", "url": "https://pubmed.ncbi.nlm.nih.gov/2525092" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q62376-1", "protein_name": "U1 small nuclear ribonucleoprotein 70 kDa", "gene_name": "Snrnp70", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q62376", "url": "https://www.uniprot.org/uniprotkb/Q62376" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.2525092", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Cell", "date": "2006", "authors": "Yang Jun, Adamian Michael, Li Tiansen", "reference": { "type": "PubMed", "id": "16339073", "url": "https://pubmed.ncbi.nlm.nih.gov/16339073" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60952-1", "protein_name": "Centrosome-associated protein CEP250", "gene_name": "Cep250", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CJ40-1", "protein_name": "Rootletin", "gene_name": "Crocc", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60952", "url": "https://www.uniprot.org/uniprotkb/Q60952" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16339073", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NRBF2 is a RAB7 effector required for autophagosome maturation and mediates the association of APP-CTFs with active form of RAB7 for degradation.", "journal": "Autophagy", "date": "2021", "authors": "Cai CZ, Yang C, Zhuang XX, Yuan NN, Wu MY, Tan JQ, Song JX, Cheung KH, Su H, Wang YT, Tang BS, Behrends C, Durairajan SSK, Yue Z, Li M, Lu JH", "reference": { "type": "PubMed", "id": "32543313", "url": "https://pubmed.ncbi.nlm.nih.gov/32543313" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VCQ3-1", "protein_name": "Nuclear receptor-binding factor 2", "gene_name": "Nrbf2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VCQ3", "url": "https://www.uniprot.org/uniprotkb/Q8VCQ3" } ], "common_name": "Mouse", "glygen_name": "Mouse", 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interacting with Rab7 after SAH.", "journal": "Journal of neuroinflammation", "date": "2021", "authors": "Zeng H, Chen H, Li M, Zhuang J, Peng Y, Zhou H, Xu C, Yu Q, Fu X, Cao S, Cai J, Yan F, Chen G", "reference": { "type": "PubMed", "id": "34530854", "url": "https://pubmed.ncbi.nlm.nih.gov/34530854" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VCQ3-1", "protein_name": "Nuclear receptor-binding factor 2", "gene_name": "Nrbf2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VCQ3", "url": "https://www.uniprot.org/uniprotkb/Q8VCQ3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.34530854", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel LIM protein Cal promotes cardiac differentiation by association with CSX/NKX2-5.", "journal": "J. Cell Biol.", "date": "2004", "authors": "Akazawa H, Kudoh S, Mochizuki N, Takekoshi N, Takano H, Nagai T, Komuro I", "reference": { "type": "PubMed", "id": "14757752", "url": "https://pubmed.ncbi.nlm.nih.gov/14757752" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42582-1", "protein_name": "Homeobox protein Nkx-2.5", "gene_name": "Nkx2-5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q71FD7-1", "protein_name": "Filamin-binding LIM protein 1", "gene_name": "Fblim1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P42582", "url": "https://www.uniprot.org/uniprotkb/P42582" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.14757752", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Jumonji represses atrial natriuretic factor gene expression by inhibiting transcriptional activities of cardiac transcription factors.", "journal": "Mol. Cell. Biol.", "date": "2004", "authors": "Kim Tae-Gyun, Chen Junqin, Sadoshima Junich, Lee Youngsook", "reference": { "type": "PubMed", "id": "15542826", "url": "https://pubmed.ncbi.nlm.nih.gov/15542826" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42582-1", "protein_name": "Homeobox protein Nkx-2.5", "gene_name": "Nkx2-5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q08369-1", "protein_name": "Transcription factor GATA-4", "gene_name": "Gata4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62315-1", "protein_name": "Protein Jumonji", "gene_name": "Jarid2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P42582", "url": "https://www.uniprot.org/uniprotkb/P42582" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15542826", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Biol. Chem.", "date": "2007", "authors": "Farin HF, Bussen M, Schmidt MK, Singh MK, Schuster-Gossler K, Kispert A", "reference": { "type": "PubMed", "id": "17584735", "url": "https://pubmed.ncbi.nlm.nih.gov/17584735" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42582-1", "protein_name": "Homeobox protein Nkx-2.5", "gene_name": "Nkx2-5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q08369-1", "protein_name": "Transcription factor GATA-4", "gene_name": "Gata4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O95935-1", "protein_name": "T-box transcription factor TBX18", "gene_name": "TBX18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O70306-1", "protein_name": "T-box transcription factor TBX15", "gene_name": "Tbx15", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O95947-1", "protein_name": "T-box transcription factor TBX6", "gene_name": "TBX6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9EPZ6-1", "protein_name": "T-box transcription 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The cardiac tissue-restricted homeobox protein Csx/Nkx2.5 physically associates with the zinc finger protein GATA4 and cooperatively activates atrial natriuretic factor gene expression.", "journal": "Molecular and cellular biology", "date": "1998", "authors": "Lee Y, Shioi T, Kasahara H, Jobe SM, Wiese RJ, Markham BE, Izumo S", "reference": { "type": "PubMed", "id": "9584153", "url": "https://pubmed.ncbi.nlm.nih.gov/9584153" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42582-1", "protein_name": "Homeobox protein Nkx-2.5", "gene_name": "Nkx2-5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P43694-1", "protein_name": "Transcription factor GATA-4", "gene_name": "GATA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08369-1", "protein_name": "Transcription factor GATA-4", "gene_name": "Gata4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": 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Biol. Chem.", "date": "1998", "authors": "Kim YH, Choi CY, Lee SJ, Conti MA, Kim Y", "reference": { "type": "PubMed", "id": "9748262", "url": "https://pubmed.ncbi.nlm.nih.gov/9748262" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42582-1", "protein_name": "Homeobox protein Nkx-2.5", "gene_name": "Nkx2-5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QZR5-1", "protein_name": "Homeodomain-interacting protein kinase 2", "gene_name": "Hipk2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ERH7-1", "protein_name": "Homeodomain-interacting protein kinase 3", "gene_name": "Hipk3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P42580-1", "protein_name": "NK1 transcription factor-related protein 2", "gene_name": "Nkx1-2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88904-1", "protein_name": "Homeodomain-interacting protein kinase 1", "gene_name": "Hipk1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P42582", "url": "https://www.uniprot.org/uniprotkb/P42582" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 228, "end_pos": 228, "sequence_org": "K", "sequence_mut": "R", "comment": "No enzymatic activity, but still interacts with TP53 and NLK. Blocks the ability to induce cell growth arrest. 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