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Xuechun, Tang Miao, Li Xiaohong, Anderton Priscilla, Zhan Xiaoming, Choi Mihwa, Russell Jamie, Bu Chun-Hui, Lyon Stephen, Xu Darui, Hildebrand Sara, Scott Lindsay, Quan Jiexia, Simpson Rochelle, Sun Qihua, Qin Baifang, Collie Tiffany, Tadesse Meron, Moresco Eva Marie Y, Beutler Bruce", "reference": { "type": "PubMed", "id": "36228616", "url": "https://pubmed.ncbi.nlm.nih.gov/36228616" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CIV7-1", "protein_name": "Transcription factor Ovo-like 2", "gene_name": "Ovol2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P53566-1", "protein_name": "CCAAT/enhancer-binding protein alpha", "gene_name": "Cebpa", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CIV7", "url": "https://www.uniprot.org/uniprotkb/Q8CIV7" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { 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Genet.", "date": "2001", "authors": "Alagramam K N, Murcia C L, Kwon H Y, Pawlowski K S, Wright C G, Woychik R P", "reference": { "type": "PubMed", "id": "11138007", "url": "https://pubmed.ncbi.nlm.nih.gov/11138007" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99PJ1-1", "protein_name": "Protocadherin-15", "gene_name": "Pcdh15", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99PJ1", "url": "https://www.uniprot.org/uniprotkb/Q99PJ1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11138007", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of Pcdh15 in the inner ear, nervous system and various epithelia of the developing embryo.", "journal": "Mech. 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Ophthalmol. Vis. Sci.", "date": "2006", "authors": "Haywood-Watson Ricky J L, Ahmed Zubair M, Kjellstrom Sten, Bush Ronald A, Takada Yuichiro, Hampton Lori L, Battey James F, Sieving Paul A, Friedman Thomas B", "reference": { "type": "PubMed", "id": "16799054", "url": "https://pubmed.ncbi.nlm.nih.gov/16799054" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99PJ1-1", "protein_name": "Protocadherin-15", "gene_name": "Pcdh15", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99PJ1", "url": "https://www.uniprot.org/uniprotkb/Q99PJ1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16799054", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The tip-link antigen, a protein associated with the transduction complex of sensory hair cells, is protocadherin-15.", "journal": "J. Neurosci.", "date": "2006", "authors": "Ahmed ZM, Goodyear R, Riazuddin S, Lagziel A, Legan PK, Behra M, Burgess SM, Lilley KS, Wilcox ER, Riazuddin S, Griffith AJ, Frolenkov GI, Belyantseva IA, Richardson GP, Friedman TB", "reference": { "type": "PubMed", "id": "16807332", "url": "https://pubmed.ncbi.nlm.nih.gov/16807332" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99PJ1-1", "protein_name": "Protocadherin-15", "gene_name": "Pcdh15", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q0ZM14-1", "protein_name": "Protocadherin-15", "gene_name": "PCDH15; Pcdh15", "tax_name": "Chicken" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99PJ1", "url": "https://www.uniprot.org/uniprotkb/Q99PJ1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16807332", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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essential protein SNEV.", "journal": "Molecular and cellular biology", "date": "2007", "authors": "Fortschegger K, Wagner B, Voglauer R, Katinger H, Sibilia M, Grillari J", "reference": { "type": "PubMed", "id": "17283042", "url": "https://pubmed.ncbi.nlm.nih.gov/17283042" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99KP6-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "Prpf19", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99KP6", "url": "https://www.uniprot.org/uniprotkb/Q99KP6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17283042", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of the domains required for the localization of Prp19p to lipid droplets or the nucleus.", "journal": "Biochemical and biophysical research communications", "date": "2007", "authors": "Cho SY, Park PJ, Lee JH, Kim JJ, Lee TR", "reference": { "type": "PubMed", "id": "17964290", "url": "https://pubmed.ncbi.nlm.nih.gov/17964290" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99KP6-1", "protein_name": "Pre-mRNA-processing factor 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CRL4B E3 ligase recruited by PRPF19 inhibits SARS-CoV-2 infection by targeting ORF6 for ubiquitin-dependent degradation.", "journal": "mBio", "date": "2024-02-14", "authors": "Zhang Linran, Hao Pengfei, Chen Xiang, Lv Shuai, Gao Wenying, Li Chang, Li Zhaolong, Zhang Wenyan", "reference": { "type": "PubMed", "id": "38265236", "url": "https://pubmed.ncbi.nlm.nih.gov/38265236" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99KP6-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "Prpf19", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99KP6", "url": "https://www.uniprot.org/uniprotkb/Q99KP6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38265236", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"10526152", "url": "https://pubmed.ncbi.nlm.nih.gov/10526152" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q64512-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 13", "gene_name": "Ptpn13", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88665-1", "protein_name": "Bromodomain-containing protein 7", "gene_name": "Brd7", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q64512", "url": "https://www.uniprot.org/uniprotkb/Q64512" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10526152", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The zyxin-related protein TRIP6 interacts with PDZ motifs in the adaptor protein RIL and the protein tyrosine phosphatase PTP-BL.", "journal": "Eur. J. Cell Biol.", "date": "2000", "authors": "Cuppen E, van Ham M, Wansink DG, de Leeuw A, Wieringa B, Hendriks W", "reference": { "type": "PubMed", "id": "10826496", "url": "https://pubmed.ncbi.nlm.nih.gov/10826496" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q64512-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 13", "gene_name": "Ptpn13", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70271-1", "protein_name": "PDZ and LIM domain protein 4", "gene_name": "Pdlim4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q15654-1", "protein_name": "Thyroid receptor-interacting protein 6", "gene_name": "TRIP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1Y4-1", "protein_name": "Thyroid receptor-interacting protein 6", "gene_name": "Trip6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q12923-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 13", "gene_name": "PTPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50479-1", "protein_name": "PDZ and LIM domain protein 4", "gene_name": "PDLIM4", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q64512", "url": "https://www.uniprot.org/uniprotkb/Q64512" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 326, "end_pos": 330, "sequence_org": "KVELV", "sequence_mut": "", "comment": "Interaction with TRIP6.", "evidence": [ { "database": "UniProtKB", "id": "P70271", "url": "https://www.uniprot.org/uniprotkb/P70271" }, { "database": "PubMed", "id": "10826496", "url": "https://pubmed.ncbi.nlm.nih.gov/10826496" } ], "uniprot_canonical_ac": "P70271-1" }, { "start_pos": 479, "end_pos": 480, "sequence_org": "DC", "sequence_mut": "", "comment": "Interacts with PDLIM4. Loss of interaction with PTPN13.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y4", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y4" }, { "database": "PubMed", "id": "10826496", "url": "https://pubmed.ncbi.nlm.nih.gov/10826496" } ], "uniprot_canonical_ac": "Q9Z1Y4-1" } ], "record_id": "pubmed.10826496", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The interaction of PTP-BL PDZ domains with RIL: an enigmatic role for the RIL LIM domain.", "journal": "Mol. Biol. Rep.", "date": "2004", "authors": "van den Berk LC, van Ham MA, te Lindert MM, Walma T, Aelen J, Vuister GW, Hendriks WJ", "reference": { "type": "PubMed", "id": "15663004", "url": "https://pubmed.ncbi.nlm.nih.gov/15663004" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q64512-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 13", "gene_name": "Ptpn13", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70271-1", "protein_name": "PDZ and LIM domain protein 4", "gene_name": "Pdlim4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O70209-1", "protein_name": "PDZ and LIM domain protein 3", "gene_name": "Pdlim3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q64512", "url": "https://www.uniprot.org/uniprotkb/Q64512" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 261, 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"evidence": [ { "database": "UniProtKB", "id": "P70271", "url": "https://www.uniprot.org/uniprotkb/P70271" }, { "database": "PubMed", "id": "15663004", "url": "https://pubmed.ncbi.nlm.nih.gov/15663004" } ], "uniprot_canonical_ac": "P70271-1" }, { "start_pos": 265, "end_pos": 265, "sequence_org": "T", "sequence_mut": "A", "comment": "No loss of interaction with PTPN13 (via PDZ domains); when associated with A-267.", "evidence": [ { "database": "UniProtKB", "id": "P70271", "url": "https://www.uniprot.org/uniprotkb/P70271" }, { "database": "PubMed", "id": "15663004", "url": "https://pubmed.ncbi.nlm.nih.gov/15663004" } ], "uniprot_canonical_ac": "P70271-1" }, { "start_pos": 266, "end_pos": 266, "sequence_org": "I", "sequence_mut": "A", "comment": "No loss of interaction with PTPN13 (via PDZ domains); when associated with A-264.", "evidence": [ { "database": "UniProtKB", "id": "P70271", "url": "https://www.uniprot.org/uniprotkb/P70271" }, { "database": "PubMed", "id": "15663004", "url": 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"database": "UniProtKB", "id": "P70271", "url": "https://www.uniprot.org/uniprotkb/P70271" }, { "database": "PubMed", "id": "15663004", "url": "https://pubmed.ncbi.nlm.nih.gov/15663004" } ], "uniprot_canonical_ac": "P70271-1" }, { "start_pos": 292, "end_pos": 292, "sequence_org": "G", "sequence_mut": "A", "comment": "No loss of interaction with PTPN13 (via PDZ domains); when associated with A-291.", "evidence": [ { "database": "UniProtKB", "id": "P70271", "url": "https://www.uniprot.org/uniprotkb/P70271" }, { "database": "PubMed", "id": "15663004", "url": "https://pubmed.ncbi.nlm.nih.gov/15663004" } ], "uniprot_canonical_ac": "P70271-1" }, { "start_pos": 294, "end_pos": 294, "sequence_org": "F", "sequence_mut": "A", "comment": "No loss of interaction with PTPN13 (via PDZ domains); when associated with A-295.", "evidence": [ { "database": "UniProtKB", "id": "P70271", "url": "https://www.uniprot.org/uniprotkb/P70271" }, { "database": "PubMed", "id": "15663004", "url": 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"A", "comment": "No loss of interaction with PTPN13 (via PDZ domains); when associated with A-299.", "evidence": [ { "database": "UniProtKB", "id": "P70271", "url": "https://www.uniprot.org/uniprotkb/P70271" }, { "database": "PubMed", "id": "15663004", "url": "https://pubmed.ncbi.nlm.nih.gov/15663004" } ], "uniprot_canonical_ac": "P70271-1" } ], "record_id": "pubmed.15663004", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The tyrosine phosphatase PTPN13/FAP-1 links calpain-2, TBI and tau tyrosine phosphorylation.", "journal": "Scientific reports", "date": "2017", "authors": "Wang Y, Hall RA, Lee M, Kamgar-Parsi A, Bi X, Baudry M", "reference": { "type": "PubMed", "id": "28924170", "url": "https://pubmed.ncbi.nlm.nih.gov/28924170" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q64512-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 13", "gene_name": "Ptpn13", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q64512", "url": "https://www.uniprot.org/uniprotkb/Q64512" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.28924170", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular Basis of Class III Ligand Recognition by PDZ3 in Murine Protein Tyrosine Phosphatase PTPN13.", "journal": "Journal of molecular biology", "date": "2018", "authors": "Kock G, Dicks M, Yip KT, Kohl B, Putz S, Heumann R, Erdmann KS, Stoll R", "reference": { "type": "PubMed", "id": 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phosphatase (RIP) expressed at a very early stage of differentiation in both mouse erythroleukemia and embryonal carcinoma cells.", "journal": "FEBS Lett.", "date": "1995", "authors": "Chida D, Kume T, Mukouyama Y, Tabata S, Nomura N, Thomas M L, Watanabe T, Oishi M", "reference": { "type": "PubMed", "id": "7843407", "url": "https://pubmed.ncbi.nlm.nih.gov/7843407" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q64512-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 13", "gene_name": "Ptpn13", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q64512", "url": "https://www.uniprot.org/uniprotkb/Q64512" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.7843407", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Biophys. Res. Commun.", "date": "1994", "authors": "Sawada M, Ogata M, Fujino Y, Hamaoka T", "reference": { "type": "PubMed", "id": "8074693", "url": "https://pubmed.ncbi.nlm.nih.gov/8074693" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q64512-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 13", "gene_name": "Ptpn13", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62130-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 14", "gene_name": "Ptpn14", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q64512", "url": "https://www.uniprot.org/uniprotkb/Q64512" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8074693", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning of a mouse epithelial protein-tyrosine phosphatase with similarities to submembranous proteins.", "journal": "J. Cell. Biochem.", "date": "1995", "authors": "Hendriks W, Schepens J, Bachner D, Rijss J, Zeeuwen P, Zechner U, Hameister H, Wieringa B", "reference": { "type": "PubMed", "id": "8749712", "url": "https://pubmed.ncbi.nlm.nih.gov/8749712" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q64512-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 13", "gene_name": "Ptpn13", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q64512", "url": "https://www.uniprot.org/uniprotkb/Q64512" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8749712", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PDZ motifs in PTP-BL and RIL bind to internal protein segments in the LIM domain protein RIL.", "journal": "Mol. Biol. Cell", "date": "1998", "authors": "Cuppen E, Gerrits H, Pepers B, Wieringa B, Hendriks W", "reference": { "type": "PubMed", "id": "9487134", "url": "https://pubmed.ncbi.nlm.nih.gov/9487134" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q64512-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 13", "gene_name": "Ptpn13", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70271-1", "protein_name": "PDZ and LIM domain protein 4", "gene_name": "Pdlim4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q64512", "url": "https://www.uniprot.org/uniprotkb/Q64512" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9487134", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The mouse Psma1 gene coding for the alpha-type C2 proteasome subunit: structural and functional analysis, mapping, and colocalization with Pde3b on mouse chromosome 7.", "journal": "Genomics", "date": "2000", "authors": "Hopitzan A, Himmelbauer H, Spevak W, Castanon M J", "reference": { "type": "PubMed", "id": "10873386", "url": "https://pubmed.ncbi.nlm.nih.gov/10873386" }, "referenced_glycans": [], 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proteomics of RAW 264.7 macrophages upon interaction with heat-inactivated Candida albicans cells unravel an anti-inflammatory response.", "journal": "Proteomics", "date": "2009", "authors": "Martinez-Solano L, Reales-Calderon JA, Nombela C, Molero G, Gil C", "reference": { "type": "PubMed", "id": "19526544", "url": "https://pubmed.ncbi.nlm.nih.gov/19526544" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9R1P4-1", "protein_name": "Proteasome subunit alpha type-1", "gene_name": "Psma1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9R1P4", "url": "https://www.uniprot.org/uniprotkb/Q9R1P4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19526544", 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"reference": { "type": "PubMed", "id": "16487046", "url": "https://pubmed.ncbi.nlm.nih.gov/16487046" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3TXS7-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 1", "gene_name": "Psmd1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3TXS7", "url": "https://www.uniprot.org/uniprotkb/Q3TXS7" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16487046", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], 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Cell physiology", "date": "2004", "authors": "Fatma N, Kubo E, Chylack LT Jr, Shinohara T, Akagi Y, Singh DP", "reference": { "type": "PubMed", "id": "15238362", "url": "https://pubmed.ncbi.nlm.nih.gov/15238362" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q99JF8-1", "protein_name": "PC4 and SFRS1-interacting protein", "gene_name": "Psip1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q99JF8", "url": "https://www.uniprot.org/uniprotkb/Q99JF8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15238362", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Binding of IRBIT to the IP3 receptor: determinants and functional effects.", "journal": "Biochemical and biophysical research communications", "date": "2006", "authors": "Devogelaere B, Nadif Kasri N, Derua R, Waelkens E, Callewaert G, Missiaen L, Parys JB, De Smedt H", "reference": { "type": "PubMed", "id": "16527252", "url": "https://pubmed.ncbi.nlm.nih.gov/16527252" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80SW1-1", "protein_name": "S-adenosylhomocysteine hydrolase-like protein 1", "gene_name": "Ahcyl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P11881-1", "protein_name": "Inositol 1,4,5-trisphosphate-gated calcium channel ITPR1", "gene_name": "Itpr1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q80SW1", "url": "https://www.uniprot.org/uniprotkb/Q80SW1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 70, "end_pos": 73, "sequence_org": "SSTD", "sequence_mut": "", "comment": "Inhibits interaction with ITPR1.", "evidence": [ { "database": "UniProtKB", "id": "Q80SW1", "url": "https://www.uniprot.org/uniprotkb/Q80SW1" }, { "database": "PubMed", "id": "16527252", "url": "https://pubmed.ncbi.nlm.nih.gov/16527252" } ], "uniprot_canonical_ac": "Q80SW1-1" }, { "start_pos": 73, "end_pos": 73, "sequence_org": "D", "sequence_mut": "R", "comment": "Inhibits interaction with ITPR1.", "evidence": [ { "database": "UniProtKB", "id": "Q80SW1", "url": "https://www.uniprot.org/uniprotkb/Q80SW1" }, { "database": "PubMed", "id": "16527252", "url": "https://pubmed.ncbi.nlm.nih.gov/16527252" } ], "uniprot_canonical_ac": "Q80SW1-1" }, { "start_pos": 82, "end_pos": 88, "sequence_org": "TDSSDDE", "sequence_mut": "", "comment": "Inhibits interaction with ITPR1.", "evidence": [ { "database": "UniProtKB", "id": "Q80SW1", "url": "https://www.uniprot.org/uniprotkb/Q80SW1" }, { "database": "PubMed", "id": "16527252", "url": "https://pubmed.ncbi.nlm.nih.gov/16527252" } ], "uniprot_canonical_ac": "Q80SW1-1" }, { "start_pos": 86, "end_pos": 88, "sequence_org": "DDE", "sequence_mut": "KKK", "comment": "Does not inhibit interaction with ITPR1.", "evidence": [ { "database": "UniProtKB", "id": "Q80SW1", "url": "https://www.uniprot.org/uniprotkb/Q80SW1" }, { "database": "PubMed", "id": "16527252", "url": "https://pubmed.ncbi.nlm.nih.gov/16527252" } ], "uniprot_canonical_ac": "Q80SW1-1" } ], "record_id": "pubmed.16527252", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "IRBIT, an inositol 1,4,5-trisphosphate receptor-binding protein, specifically binds to and activates pancreas-type Na+/HCO3- cotransporter 1 (pNBC1).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Shirakabe K, Priori G, Yamada H, Ando H, Horita S, Fujita T, Fujimoto I, Mizutani A, Seki G, Mikoshiba K", "reference": { "type": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80SW1-1", "protein_name": "S-adenosylhomocysteine hydrolase-like protein 1", "gene_name": "Ahcyl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y6R1-1", "protein_name": "Electrogenic sodium bicarbonate cotransporter 1", "gene_name": "SLC4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O88343-1", "protein_name": "Electrogenic sodium bicarbonate cotransporter 1", "gene_name": "Slc4a4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O43865-1", "protein_name": "S-adenosylhomocysteine hydrolase-like protein 1", "gene_name": "AHCYL1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q80SW1", "url": "https://www.uniprot.org/uniprotkb/Q80SW1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 52, "end_pos": 52, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on interaction with SLC4A4.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 58, "end_pos": 58, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on interaction with SLC4A4.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 62, "end_pos": 62, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on interaction with SLC4A4. No effect on interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 64, "end_pos": 64, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. No effect on interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 66, "end_pos": 66, "sequence_org": "S", "sequence_mut": "A", "comment": "Slightly decreases interaction with ITPR1. Slightly decreases phosphorylation. No effect on interaction with SLC4A4. Abolishes interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 68, "end_pos": 68, "sequence_org": "S", "sequence_mut": "A", "comment": "Highly decreases phosphorylation. Abolishes interaction with ITPR1. No effect on interaction with BCL2L10. Marked decrease in interaction of BCL2L10 with ITPR1. Decreased ability of BCL2L10 to reduce ITPR1-mediated calcium release and to prevent apoptosis. No effect on formation of multimers. Abolishes interaction with SLC4A4. Abolishes interaction with FIP1L1. Highly decreases interaction with SLC9A3. Highly decreases interaction with SLC9A3; when associated with A-71 and A-74.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "20584908", "url": "https://pubmed.ncbi.nlm.nih.gov/20584908" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" }, { "database": "PubMed", "id": "27995898", "url": "https://pubmed.ncbi.nlm.nih.gov/27995898" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 70, "end_pos": 70, "sequence_org": "S", "sequence_mut": "A", "comment": "Highly decreases interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. Abolishes interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 71, "end_pos": 71, "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes interaction with ITPR1. Highly decreases phosphorylation. Abolishes interaction with SLC4A4. Abolishes interaction with FIP1L1. Highly decreases interaction with SLC9A3; when associated with A-68 and A-74.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "20584908", "url": "https://pubmed.ncbi.nlm.nih.gov/20584908" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 72, "end_pos": 72, "sequence_org": "T", "sequence_mut": "A", "comment": "Highly decreases interaction with ITPR1. Slightly increases phosphorylation. No effect on interaction with SLC4A4. Highly decreases interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 74, "end_pos": 74, "sequence_org": "S", "sequence_mut": "G", "comment": "Abolishes interaction with ITPR1. Slightly decreases phosphorylation. Strongly decreases interaction with SLC4A4. Abolishes interaction with FIP1L1. Highly decreases interaction with SLC9A3; when associated with A-68 and A-71.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "20584908", "url": "https://pubmed.ncbi.nlm.nih.gov/20584908" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 76, "end_pos": 76, "sequence_org": "S", "sequence_mut": "G", "comment": "No effect on interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. No effect on interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 77, "end_pos": 77, "sequence_org": "S", "sequence_mut": "A", "comment": "Highly decreases interaction with ITPR1. Slightly decreases phosphorylation. Strongly decreases interaction with SLC4A4. Abolishes interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 80, "end_pos": 80, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on interaction with SLC4A4. Highly decreases interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 82, "end_pos": 82, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. Decreases interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 84, "end_pos": 84, "sequence_org": "S", "sequence_mut": "A", "comment": "Slightly decreases interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. Decreases interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 85, "end_pos": 85, "sequence_org": "S", "sequence_mut": "A", "comment": "Slightly decreases interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. Decreases interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 90, "end_pos": 90, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on interaction with ITPR1. No effect on phosphorylation. No effect on interaction with SLC4A4. No effect on interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" }, { "start_pos": 97, "end_pos": 97, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on interaction with ITPR1. No effect on interaction with SLC4A4. No effect on interaction with FIP1L1.", "evidence": [ { "database": "UniProtKB", "id": "O43865", "url": "https://www.uniprot.org/uniprotkb/O43865" }, { "database": "PubMed", "id": "16769890", "url": "https://pubmed.ncbi.nlm.nih.gov/16769890" }, { "database": "PubMed", "id": "16793548", "url": "https://pubmed.ncbi.nlm.nih.gov/16793548" }, { "database": "PubMed", "id": "19224921", "url": "https://pubmed.ncbi.nlm.nih.gov/19224921" } ], "uniprot_canonical_ac": "O43865-1" } ], "record_id": "pubmed.16769890", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein phosphatase-1 is a novel regulator of the interaction between IRBIT and the inositol 1,4,5-trisphosphate receptor.", "journal": "The Biochemical journal", "date": "2007", "authors": "Devogelaere B, Beullens M, Sammels E, Derua R, Waelkens E, van Lint J, Parys JB, Missiaen L, Bollen M, De Smedt H", "reference": { "type": "PubMed", "id": "17635105", "url": "https://pubmed.ncbi.nlm.nih.gov/17635105" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80SW1-1", "protein_name": "S-adenosylhomocysteine hydrolase-like protein 1", "gene_name": "Ahcyl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O43865-1", "protein_name": "S-adenosylhomocysteine hydrolase-like protein 1", "gene_name": 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}, { "start_pos": 68, "end_pos": 68, "kinase_uniprot_canonical_ac": "Q15139-1", "kinase_gene_name": "PRKD1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43865", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43865" }, { "database": "PubMed", "id": "17635105", "url": "https://pubmed.ncbi.nlm.nih.gov/17635105" } ], "site_lbl": "Ser68", "uniprot_canonical_ac": "O43865-1" } ], "record_id": "pubmed.17635105", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "IRBIT governs epithelial secretion in mice by antagonizing the WNK/SPAK kinase pathway.", "journal": "The Journal of clinical investigation", "date": "2011", "authors": "Yang D, Li Q, So I, Huang CL, Ando H, Mizutani A, Seki G, Mikoshiba K, Thomas PJ, Muallem S", "reference": { "type": "PubMed", "id": "21317537", "url": "https://pubmed.ncbi.nlm.nih.gov/21317537" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80SW1-1", "protein_name": "S-adenosylhomocysteine hydrolase-like protein 1", "gene_name": "Ahcyl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80UE6-1", "protein_name": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in USP9X are associated with X-linked intellectual disability and disrupt neuronal cell migration and growth.", "journal": "American journal of human genetics", "date": "2014", "authors": "Homan CC, Kumar R, Nguyen LS, Haan E, Raymond FL, Abidi F, Raynaud M, Schwartz CE, Wood SA, Gecz J, Jolly LA", "reference": { "type": "PubMed", "id": "24607389", "url": "https://pubmed.ncbi.nlm.nih.gov/24607389" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P70398-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "Usp9x", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O43602-1", "protein_name": "Neuronal migration protein doublecortin", "gene_name": "DCX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", 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No effect on interaction with SIN1.", "evidence": [ { "database": "UniProtKB", "id": "Q6R327", "url": "https://www.uniprot.org/uniprotkb/Q6R327" }, { "database": "PubMed", "id": "33378666", "url": "https://pubmed.ncbi.nlm.nih.gov/33378666" } ], "uniprot_canonical_ac": "Q6R327-1" }, { "start_pos": 1566, "end_pos": 1566, "sequence_org": "C", "sequence_mut": "A", "comment": "Does not restore RICTOR expression levels when introduced into cells where endogenous USP9X has been silenced.", "evidence": [ { "database": "UniProtKB", "id": "Q93008", "url": "https://www.uniprot.org/uniprotkb/Q93008" }, { "database": "PubMed", "id": "33378666", "url": "https://pubmed.ncbi.nlm.nih.gov/33378666" } ], "uniprot_canonical_ac": "Q93008-1" } ], "record_id": "pubmed.33378666", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ 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Chem.", "date": "1992", "authors": "Powers P A, Liu S, Hogan K, Gregg R G", "reference": { "type": "PubMed", "id": "1385409", "url": "https://pubmed.ncbi.nlm.nih.gov/1385409" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R3Z5-1", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-1", "gene_name": "Cacnb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q02641-1", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-1", "gene_name": "CACNB1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R3Z5", "url": "https://www.uniprot.org/uniprotkb/Q8R3Z5" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.1385409", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structures of the murine genes for the beta1- and beta4-Subunits of the voltage-dependent calcium channel.", "journal": "J. 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J.", "date": "2011", "authors": "Rebbeck Robyn T, Karunasekara Yamuna, Gallant Esther M, Board Philip G, Beard Nicole A, Casarotto Marco G, Dulhunty Angela F", "reference": { "type": "PubMed", "id": "21320436", "url": "https://pubmed.ncbi.nlm.nih.gov/21320436" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R3Z5-1", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-1", "gene_name": "Cacnb1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R3Z5", "url": "https://www.uniprot.org/uniprotkb/Q8R3Z5" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.21320436", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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U.S.A.", "date": "2009", "authors": "Sachdeva Mira M, Claiborn Kathryn C, Khoo Cynthia, Yang Juxiang, Groff David N, Mirmira Raghavendra G, Stoffers Doris A", "reference": { "type": "PubMed", "id": "19855005", "url": "https://pubmed.ncbi.nlm.nih.gov/19855005" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q80U30-1", "protein_name": "Protein CLEC16A", "gene_name": "Clec16a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q80U30", "url": "https://www.uniprot.org/uniprotkb/Q80U30" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19855005", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Biol.", "date": "2002", "authors": "Krebs DL, Uren RT, Metcalf D, Rakar S, Zhang JG, Starr R, De Souza DP, Hanzinikolas K, Eyles J, Connolly LM, Simpson RJ, Nicola NA, Nicholson SE, Baca M, Hilton DJ, Alexander WS", "reference": { "type": "PubMed", "id": "12052866", "url": "https://pubmed.ncbi.nlm.nih.gov/12052866" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JLY0-1", "protein_name": "Suppressor of cytokine signaling 6", "gene_name": "Socs6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P26450-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit alpha", "gene_name": "Pik3r1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VHQ2-1", "protein_name": "Suppressor of cytokine signaling 7", "gene_name": "Socs7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z0Y7-1", "protein_name": "Insulin receptor substrate 4", "gene_name": "Irs4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, 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United States of America", "date": "2001-02-13", "authors": "Cho B K, Lian K C, Lee P, Brunmark A, McKinley C, Chen J, Kranz D M, Eisen H N", "reference": { "type": "PubMed", "id": "11172018", "url": "https://pubmed.ncbi.nlm.nih.gov/11172018" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60597-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "Ogdh", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60597", "url": "https://www.uniprot.org/uniprotkb/Q60597" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11172018", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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allele calibrates the avidity of the alloreactive T cell repertoire independent of TCR affinity.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2003-05-01", "authors": "Hornell Tara M C, Myers Nancy, Hansen Ted H, Connolly Janet M", "reference": { "type": "PubMed", "id": "12707327", "url": "https://pubmed.ncbi.nlm.nih.gov/12707327" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60597-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "Ogdh", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60597", "url": "https://www.uniprot.org/uniprotkb/Q60597" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12707327", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CD8 T cells, like CD4 T cells, are triggered by multivalent engagement of TCRs by MHC-peptide ligands but not by monovalent engagement.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2006-02-01", "authors": "Stone Jennifer D, Stern Lawrence J", "reference": { "type": "PubMed", "id": "16424178", "url": "https://pubmed.ncbi.nlm.nih.gov/16424178" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60597-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "Ogdh", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60597", "url": "https://www.uniprot.org/uniprotkb/Q60597" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16424178", "abstract": "", 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