[ { "title": "Nrf2 dictates the neuronal survival and differentiation of embryonic zebrafish harboring compromised alanyl-tRNA synthetase.", "journal": "Development", "date": "2022", "authors": "Jin Binbin, Xie Liqin, Zhan Dan, Zhou Luping, Feng Zhi, He Jiangyong, Qin Jie, Zhao Congjian, Luo Lingfei, Li Li", "reference": { "type": "PubMed", "id": "35929539", "url": "https://pubmed.ncbi.nlm.nih.gov/35929539" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LVL2-1", "protein_name": "Alanine--tRNA ligase", "gene_name": "aars1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LVL2", "url": "https://www.uniprot.org/uniprotkb/Q1LVL2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35929539", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Anatomy of zebrafish cerebellum and screen for mutations affecting its development.", "journal": "Dev. Biol.", "date": "2009", "authors": "Bae Young-Ki, Kani Shuichi, Shimizu Takashi, Tanabe Koji, Nojima Hideaki, Kimura Yukiko, Higashijima Shin-ichi, Hibi Masahiko", "reference": { "type": "PubMed", "id": "19371731", "url": "https://pubmed.ncbi.nlm.nih.gov/19371731" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4KMC8-1", "protein_name": "Fructose-bisphosphate aldolase C-A", "gene_name": "aldoca", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A3KPL8-1", "protein_name": "Craniofacial development protein 1", "gene_name": "cfdp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N588-1", "protein_name": "Carbonic anhydrase-related protein", "gene_name": "ca8", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4KMC8", "url": "https://www.uniprot.org/uniprotkb/Q4KMC8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19371731", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of Biological Pathways Regulating Acute Cold Resistance of Zebrafish.", "journal": "Int. J. Mol. Sci.", "date": "2021", "authors": "Ren Jing, Long Yong, Liu Ran, Song Guili, Li Qing, Cui Zongbin", "reference": { "type": "PubMed", "id": "33809683", "url": "https://pubmed.ncbi.nlm.nih.gov/33809683" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LUA8-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit E-B", "gene_name": "eif3eb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IJS9-1", "protein_name": "Forkhead box protein Q1a", "gene_name": "foxq1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LUA8", "url": "https://www.uniprot.org/uniprotkb/Q1LUA8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33809683", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"https://pubmed.ncbi.nlm.nih.gov/15363410" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q58A48-1", "protein_name": "Tsukushi", "gene_name": "tsku", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q65Z91-1", "protein_name": "Tsukushi", "gene_name": "TSKU", "tax_name": "Chicken" }, { "uniprot_canonical_ac": "Q90752-1", "protein_name": "Bone morphogenetic protein 4", "gene_name": "BMP4", "tax_name": "Chicken" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q58A48", "url": "https://www.uniprot.org/uniprotkb/Q58A48" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15363410", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ 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Cell. Proteomics", "date": "2010", "authors": "Martin Stephen, S\u00f6llner Christian, Charoensawan Varodom, Adryan Boris, Thisse Bernard, Thisse Christine, Teichmann Sarah, Wright Gavin J", "reference": { "type": "PubMed", "id": "20802085", "url": "https://pubmed.ncbi.nlm.nih.gov/20802085" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q58A48-1", "protein_name": "Tsukushi", "gene_name": "tsku", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A4JYR2-1", "protein_name": "Novel immune-type receptor 14b precursor", "gene_name": "nitr14b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IT86-1", "protein_name": "Kirre like nephrin family adhesion molecule 3, like precursor", "gene_name": "kirrel3l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NUM7-1", "protein_name": "Fibroblast growth factor receptor", "gene_name": "fgfr1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P5N0-1", "protein_name": "Epiphycan isoform 2 precursor; 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Cell. Proteomics", "date": "2010", "authors": "Charoensawan Varodom, Adryan Boris, Martin Stephen, S\u00f6llner Christian, Thisse Bernard, Thisse Christine, Wright Gavin J, Teichmann Sarah A", "reference": { "type": "PubMed", "id": "20935258", "url": "https://pubmed.ncbi.nlm.nih.gov/20935258" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q58A48-1", "protein_name": "Tsukushi", "gene_name": "tsku", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8DZ86-1", "protein_name": "Vasorin", "gene_name": "vasna", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A4JYR2-1", "protein_name": "Novel immune-type receptor 14b precursor", "gene_name": "nitr14b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IT86-1", "protein_name": "Kirre like nephrin family adhesion molecule 3, like precursor", "gene_name": "kirrel3l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NUM7-1", "protein_name": "Fibroblast growth factor receptor", "gene_name": "fgfr1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P5N0-1", "protein_name": "Epiphycan isoform 2 precursor; Epiphycan isoform X2", "gene_name": "epyc", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QHI8-1", "protein_name": "Platelet-derived growth factor receptor-like protein", "gene_name": "pdgfrl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6YV52-1", "protein_name": "Extracellular leucine-rich repeat and fibronectin type III domain containing 2a isoform X1; Extracellular leucine-rich repeat and fibronectin type III domain containing 2a precursor", "gene_name": "elfn2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PI84-1", "protein_name": "Myelin protein zero-like protein 2b precursor", "gene_name": "mpzl2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PIC1-1", "protein_name": "Insulin-like growth factor-binding protein 7 precursor", "gene_name": "igfbp7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NCH9-1", "protein_name": "V-set and transmembrane domain-containing protein 4a precursor", "gene_name": "vstm4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9R8-1", "protein_name": "Nectin cell adhesion molecule 3", "gene_name": "pvrl2l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AAX7-1", "protein_name": "Leucine rich repeat transmembrane neuronal 4 like 1 precursor", "gene_name": "lrrtm4l1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N879-1", "protein_name": "Uncharacterized protein LOC641563 isoform 1 precursor", "gene_name": "zgc:123297", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NDB5-1", "protein_name": "Hyaluronan and proteoglycan link protein 2 precursor", "gene_name": "hapln2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NGH6-1", "protein_name": "Endothelial cell adhesion molecule a isoform X1; Endothelial cell adhesion molecule a precursor", "gene_name": "esama", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A507-1", "protein_name": "Leucine-rich repeat transmembrane protein FLRT3", "gene_name": "flrt3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9Q4S1-1", "protein_name": "Lymphocyte function-associated antigen 3 isoform X2", "gene_name": "si:dkey-11f4.16", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H5F7-1", "protein_name": "Cell adhesion molecule 3 isoform X1", "gene_name": "cadm3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HGB3-1", "protein_name": "Cell adhesion molecule 4", "gene_name": "cadm4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HFH1-1", "protein_name": "Brevican core protein", "gene_name": "bcan", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FH58-1", "protein_name": "Neurotrimin isoform 1 precursor", "gene_name": "ntm", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R4D3-1", "protein_name": "Leucine-rich repeat transmembrane neuronal protein 2 precursor", "gene_name": "lrrtm2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QE54-1", "protein_name": "Activated leukocyte cell adhesion molecule b precursor", "gene_name": "alcamb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A6Z9-1", "protein_name": "Kin of IRRE-like protein 1", "gene_name": "kirrel1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q58A48", "url": "https://www.uniprot.org/uniprotkb/Q58A48" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20935258", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 25 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Whole-organism screening for gluconeogenesis identifies activators of fasting metabolism.", "journal": "Nat. Chem. Biol.", "date": "2013", "authors": "Gut Philipp, Baeza-Raja Bernat, Andersson Olov, Hasenkamp Laura, Hsiao Joseph, Hesselson Daniel, Akassoglou Katerina, Verdin Eric, Hirschey Matthew D, Stainier Didier Y R", "reference": { "type": "PubMed", "id": "23201900", "url": "https://pubmed.ncbi.nlm.nih.gov/23201900" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q58A48-1", "protein_name": "Tsukushi", "gene_name": "tsku", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N1J9-1", "protein_name": "Glucose-6-phosphatase", "gene_name": "g6pc1a.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N9G1-1", "protein_name": "carnitine O-palmitoyltransferase", "gene_name": "cpt1aa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q58A48", "url": "https://www.uniprot.org/uniprotkb/Q58A48" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23201900", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Warfarin, a potential pollutant in aquatic environment acting through Pxr signaling pathway and gamma-glutamyl carboxylation of vitamin K-dependent proteins.", "journal": "Environ. Pollut.", "date": "2014", "authors": "Fern\u00e1ndez Ignacio, Santos Adriana, Cancela M Leonor, Laiz\u00e9 Vincent, Gavaia Paulo J", "reference": { "type": "PubMed", "id": "25094061", "url": "https://pubmed.ncbi.nlm.nih.gov/25094061" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q58A48-1", "protein_name": "Tsukushi", "gene_name": "tsku", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F6X2-1", "protein_name": "vitamin-K-epoxide reductase (warfarin-sensitive)", "gene_name": "vkorc1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q58A48", "url": "https://www.uniprot.org/uniprotkb/Q58A48" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25094061", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish (Danio rerio) vary by strain and sex in their behavioral and transcriptional responses to selenium supplementation.", "journal": "Comp. Biochem. Physiol., Part A Mol. Integr. Physiol.", "date": "2010", "authors": "Benner Maia J, Drew Robert E, Hardy Ronald W, Robison Barrie D", "reference": { "type": "PubMed", "id": "20659579", "url": "https://pubmed.ncbi.nlm.nih.gov/20659579" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4KM14-1", "protein_name": "tRNA selenocysteine 1-associated protein 1-like", "gene_name": "trnau1apb; trnau1apl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NIR5-1", "protein_name": "Glutathione peroxidase", "gene_name": "gpx3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PCD1-1", "protein_name": "thioredoxin-disulfide reductase (NADPH)", "gene_name": "txnrd3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4KM14", "url": "https://www.uniprot.org/uniprotkb/Q4KM14" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20659579", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sex-specific transcriptional responses of the zebrafish (Danio rerio) brain selenoproteome to acute sodium selenite supplementation.", "journal": "Physiol. Genomics", "date": "2013", "authors": "Benner Maia J, Settles Matt L, Murdoch Gordon K, Hardy Ronald W, Robison Barrie D", "reference": { "type": "PubMed", "id": "23737534", "url": "https://pubmed.ncbi.nlm.nih.gov/23737534" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4KM14-1", "protein_name": "tRNA selenocysteine 1-associated protein 1-like", "gene_name": "trnau1apb; trnau1apl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N878-1", "protein_name": "Selenocysteine-specific elongation factor", "gene_name": "eefsec", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PCD1-1", "protein_name": "thioredoxin-disulfide reductase (NADPH)", "gene_name": "txnrd3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4KM14", "url": "https://www.uniprot.org/uniprotkb/Q4KM14" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23737534", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Selenium prevents downregulation of antioxidant selenoprotein genes by methylmercury.", "journal": "Free Radic. Biol. Med.", "date": "2014", "authors": "Penglase S, Hamre K, Ellingsen S", "reference": { "type": "PubMed", "id": "25064324", "url": "https://pubmed.ncbi.nlm.nih.gov/25064324" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4KM14-1", "protein_name": "tRNA selenocysteine 1-associated protein 1-like", "gene_name": "trnau1apb; trnau1apl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q802G7-1", "protein_name": "Selenoprotein M", "gene_name": "Selenom; selenom", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ABD8ERX7-1", "protein_name": "1.8.4.12; 1.8.4.14; Methionine-R-sulfoxide reductase B1-A", "gene_name": "msrb1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NEL1-1", "protein_name": "1.8.4.14; Methionine-R-sulfoxide reductase B1b", "gene_name": "msrb1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NUZ2-1", "protein_name": "Selenoprotein J", "gene_name": "selenoj", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PBP3-1", "protein_name": "Peroxiredoxin-like 2A", "gene_name": "prxl2a; 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Biochem.", "date": "2015", "authors": "Betancor M B, Almaida-Pag\u00e1n P F, Sprague M, Hern\u00e1ndez A, Tocher D R", "reference": { "type": "PubMed", "id": "25750091", "url": "https://pubmed.ncbi.nlm.nih.gov/25750091" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4KM14-1", "protein_name": "tRNA selenocysteine 1-associated protein 1-like", "gene_name": "trnau1apb; trnau1apl", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4KM14", "url": "https://www.uniprot.org/uniprotkb/Q4KM14" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25750091", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dietary Seleno-l-Methionine Causes Alterations in Neurotransmitters, Ultrastructure of the Brain, and Behaviors in Zebrafish (Danio rerio).", "journal": "Environ. Sci. Technol.", "date": "2021", "authors": "Li Xiao, Liu Hongsong, Li Dan, Lei Haojun, Wei Xinrong, Schlenk Daniel, Mu Jingli, Chen Hongxing, Yan Bo, Xie Lingtian", "reference": { "type": "PubMed", "id": "34488355", "url": "https://pubmed.ncbi.nlm.nih.gov/34488355" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4KM14-1", "protein_name": "tRNA selenocysteine 1-associated protein 1-like", "gene_name": "trnau1apb; trnau1apl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N4D2-1", "protein_name": "D(4) dopamine receptor", "gene_name": "drd4-rs", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q98SV1-1", "protein_name": "Selenoprotein Pa", "gene_name": "selenop; sepp1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NW48-1", "protein_name": "Selenoprotein e precursor", "gene_name": "selenoe", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4KM14", "url": "https://www.uniprot.org/uniprotkb/Q4KM14" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34488355", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning of flounder Xp18, a newly identified highly conserved protein mainly expressed in the ovary.", "journal": "Gene", "date": "2003", "authors": "Cachot J\u00e9r\u00f4me, Bultelle Florence, Drouot Laurent, Galgani Fran\u00e7ois, Fr\u00e9bourg Thierry, Leboulenger Fran\u00e7ois, Danger Jean-Michel", "reference": { "type": "PubMed", "id": "12706884", "url": "https://pubmed.ncbi.nlm.nih.gov/12706884" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q58EL2-1", "protein_name": "Novel acetylcholine receptor chaperone", "gene_name": "tmem35a; 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Comp. Endocrinol.", "date": "2019", "authors": "Safian Diego, Bogerd Jan, Schulz R\u00fcdiger W", "reference": { "type": "PubMed", "id": "31415728", "url": "https://pubmed.ncbi.nlm.nih.gov/31415728" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1RMA6-1", "protein_name": "PCNA-interacting partner", "gene_name": "parpbp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LYN0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial", "gene_name": "ndufb11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G5N0-1", "protein_name": "Double C2-like domains, gamma isoform X1", "gene_name": "doc2g", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G7J8-1", "protein_name": "Hexosyltransferase", "gene_name": "b3gnt3.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6H8T2-1", "protein_name": "Dynein axonemal intermediate chain 7", "gene_name": "dnai7", "tax_name": "Zebrafish" }, { 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Pharmacol.", "date": "2019", "authors": "Chen Bo, Zheng Yang-Min, Zhang Miao-Qing, Han Ying, Zhang Jing-Pu, Hu Chang-Qin", "reference": { "type": "PubMed", "id": "31969822", "url": "https://pubmed.ncbi.nlm.nih.gov/31969822" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1RMA6-1", "protein_name": "PCNA-interacting partner", "gene_name": "parpbp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GEY2-1", "protein_name": "Translesion synthesis protein REV1", "gene_name": "rev1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1RMA6", "url": "https://www.uniprot.org/uniprotkb/Q1RMA6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31969822", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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non-centrosomal microtubule organizing center in epithelial cells.", "journal": "Journal of genetics and genomics = Yi chuan xue bao", "date": "2018-08-20", "authors": "Zhou Xin, Xiao Chun, Li Yu, Shang Yanna, Yin Dongqin, Li Siying, Xiang Bo, Lu Ran, Ji Yi, Wu Yang, Meng Wentong, Zhu Hongyan, Liu Jin, Hu Huozhen, Mo Xianming, Xu Hong", "reference": { "type": "PubMed", "id": "30174135", "url": "https://pubmed.ncbi.nlm.nih.gov/30174135" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LUV9-1", "protein_name": "Mid1-interacting protein 1-B", "gene_name": "mid1ip1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LUV9", "url": "https://www.uniprot.org/uniprotkb/Q1LUV9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30174135", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation.", "journal": "BMC Genomics", "date": "2010", "authors": "Zheng Dongling, Kille Peter, Feeney Graham P, Cunningham Phil, Handy Richard D, Hogstrand Christer", "reference": { "type": "PubMed", "id": "20937081", "url": 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DRAGON: a member of the repulsive guidance molecule-related family of neuronal- and muscle-expressed membrane proteins is regulated by DRG11 and has neuronal adhesive properties.", "journal": "J. 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Intestinal Transcriptome Analysis Reveals Enrichment of Genes Associated with Immune and Lipid Mechanisms, Favoring Soybean Meal Tolerance in High-Growth Zebrafish (Danio Rerio).", "journal": "Genes (Basel)", "date": "2021", "authors": "Valenzuela Luis, Pacheco Sebastian, Rinc\u00f3n Gonzalo, Pavez Leonardo, Lam Natalia, Hern\u00e1ndez Adri\u00e1n J, Dantagnan Patricio, Gonz\u00e1lez Felipe, Jilberto Felipe, Ravanal M Cristina, Ramos Cecilia, Garcia H\u00e9ctor, Araneda Cristian, Ulloa Pilar E", "reference": { "type": "PubMed", "id": "34066767", "url": "https://pubmed.ncbi.nlm.nih.gov/34066767" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LWH3-1", "protein_name": "Membrane-bound transcription factor site-1 protease", "gene_name": "mbtps1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QAE0-1", "protein_name": "Cytochrome P450 27A1.4", "gene_name": "cyp27a1.4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FF10-1", "protein_name": "von Willebrand factor A domain-containing protein 1", "gene_name": "vwa1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LWH3", "url": "https://www.uniprot.org/uniprotkb/Q1LWH3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34066767", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "pnp4a Is the Causal Gene of the Medaka Iridophore Mutant guanineless.", "journal": "G3 (Bethesda)", "date": "2017", "authors": "Kimura Tetsuaki, Takehana Yusuke, Naruse Kiyoshi", "reference": { "type": "PubMed", "id": "28258112", "url": "https://pubmed.ncbi.nlm.nih.gov/28258112" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LWJ1-1", "protein_name": "Purine nucleoside phosphorylase", "gene_name": "pnp6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BGK1-1", "protein_name": "Segment polarity protein dishevelled homolog DVL-1b isoform X1", "gene_name": "dvl1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LWJ1", "url": "https://www.uniprot.org/uniprotkb/Q1LWJ1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28258112", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The SARS-CoV-2 receptor and other key components of the Renin-Angiotensin-Aldosterone System related to COVID-19 are expressed in enterocytes in larval zebrafish.", "journal": "Biol. Open", "date": "2021", "authors": "Postlethwait John H, Massaquoi Michelle S, Farnsworth Dylan R, Yan Yi-Lin, Guillemin Karen, Miller Adam C", "reference": { "type": "PubMed", "id": "33757938", "url": "https://pubmed.ncbi.nlm.nih.gov/33757938" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LWJ7-1", "protein_name": "Aminopeptidase", "gene_name": "anpeplb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JIB4-1", "protein_name": "Aminopeptidase", "gene_name": "enpep", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7T163-1", "protein_name": "Kinase D-interacting substrate of 220 kDa B", "gene_name": "kidins220b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WUY4-1", "protein_name": "Probable global transcription activator SNF2L1", "gene_name": "smarca1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JLJ7-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gnaq", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BGK3-1", "protein_name": "SH2 domain containing 1A duplicate a", "gene_name": "sh2d1aa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B826-1", "protein_name": "Polypeptide N-acetylgalactosaminyltransferase", "gene_name": "galnt2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QJN9-1", "protein_name": "Carboxypeptidase B", "gene_name": "cpb1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6YUV9-1", "protein_name": "GRB2-associated-binding protein 1 isoform X1", "gene_name": "gab1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NE13-1", "protein_name": "Cohesin subunit SA", "gene_name": "stag2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QP29-1", "protein_name": "Translational activator of cytochrome c oxidase 1", "gene_name": "taco1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TUF7-1", "protein_name": "Protein prune homolog 2", "gene_name": "prune2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAP2-1", "protein_name": "Zinc finger protein ZIC 4", "gene_name": "zic4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JIA3-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "hnrpkl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JIG9-1", "protein_name": "Transmembrane protein 184C", "gene_name": "tmem184c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F0D0-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "mrpl58", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RG20-1", "protein_name": "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2a", "gene_name": "asap2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QLW3-1", "protein_name": "Pirin", "gene_name": "pir", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6ZM83-1", "protein_name": "PiggyBac transposable element-derived protein 5", "gene_name": "pgbd5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IJL5-1", "protein_name": "Lysophospholipid acyltransferase 2b", "gene_name": "mboat2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ITP4-1", "protein_name": "MAM domain-containing protein 2a precursor", "gene_name": "mamdc2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PP60-1", "protein_name": "Carbonic anhydrase", "gene_name": "ca15b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LWJ7", "url": "https://www.uniprot.org/uniprotkb/Q1LWJ7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33757938", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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Physiol.", "date": "2009", "authors": "Wang Yi-Fang, Tseng Yung-Che, Yan Jia-Jiun, Hiroi Junya, Hwang Pung-Pung", "reference": { "type": "PubMed", "id": "19279294", "url": "https://pubmed.ncbi.nlm.nih.gov/19279294" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LX46-1", "protein_name": "Solute carrier family 12 member 3", "gene_name": "slc12a3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G046-1", "protein_name": "Solute carrier family 12 member 10, tandem duplicate 1 isoform X1", "gene_name": "slc12a10.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1L963-1", "protein_name": "Solute carrier family 12 member 10, tandem duplicate 2", "gene_name": "slc12a10.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QH36-1", "protein_name": "Solute carrier family 12 member 10, tandem duplicate 3 isoform X1", "gene_name": "slc12a10.3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, 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Mol. Life Sci.", "date": "2024", "authors": "Abu Obaid Asmaa, Ivandic Ivan, Korsching Sigrun I", "reference": { "type": "PubMed", "id": "38727814", "url": "https://pubmed.ncbi.nlm.nih.gov/38727814" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LX46-1", "protein_name": "Solute carrier family 12 member 3", "gene_name": "slc12a3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1L963-1", "protein_name": "Solute carrier family 12 member 10, tandem duplicate 2", "gene_name": "slc12a10.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PBD2-1", "protein_name": "Carbonic anhydrase", "gene_name": "ca2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LX46", "url": "https://www.uniprot.org/uniprotkb/Q1LX46" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38727814", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Extracellular component hyaluronic acid and its receptor Hmmr are required for epicardial EMT during heart regeneration.", "journal": "Cardiovasc. Res.", "date": "2015", "authors": "Missinato Maria A, Tobita Kimimasa, Romano Nicla, Carroll James A, Tsang Michael", "reference": { "type": "PubMed", "id": "26156497", "url": "https://pubmed.ncbi.nlm.nih.gov/26156497" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LX72-1", "protein_name": "Synemin", "gene_name": "synm", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N062-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "polr2d", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B728-1", "protein_name": "Hyaluronan synthase 1 isoform X1", "gene_name": "has1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H5L6-1", "protein_name": "Hyaluronan mediated motility receptor isoform X1", "gene_name": "hmmr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AJI3-1", "protein_name": "Hyaluronan synthase 3 isoform X1", "gene_name": "has3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LX72", "url": "https://www.uniprot.org/uniprotkb/Q1LX72" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26156497", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "c-Abl Tyrosine Kinase Is Regulated Downstream of the Cytoskeletal Protein Synemin in Head and Neck Squamous Cell Carcinoma Radioresistance and DNA Repair.", "journal": "Int. 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Sci.", "date": "2020", "authors": "Deville SS, Delgadillo Silva LF, Vehlow A, Cordes N", "reference": { "type": "PubMed", "id": "33019757", "url": "https://pubmed.ncbi.nlm.nih.gov/33019757" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LX72-1", "protein_name": "Synemin", "gene_name": "synm", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O15061-1", "protein_name": "Synemin", "gene_name": "SYNM", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LX72", "url": "https://www.uniprot.org/uniprotkb/Q1LX72" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33019757", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "trappc11 is required for protein glycosylation in zebrafish and humans.", "journal": "Mol. Biol. Cell", "date": "2016", "authors": "DeRossi C, Vacaru A, Rafiq R, Cinaroglu A, Imrie D, Nayar S, Baryshnikova A, Milev MP, Stanga D, Kadakia D, Gao N, Chu J, Freeze HH, Lehrman MA, Sacher M, Sadler KC", "reference": { "type": "PubMed", "id": "26912795", "url": "https://pubmed.ncbi.nlm.nih.gov/26912795" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LXA2-1", "protein_name": "Dolichol-phosphate mannosyltransferase subunit 3", "gene_name": "dpm3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PPK1-1", "protein_name": "Squalene synthase", "gene_name": "fdft1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AZY9-1", "protein_name": "Mannosyltransferase", "gene_name": "alg9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DBU5-1", "protein_name": "Mannose-1-phosphate guanylyltransferase catalytic subunit beta", "gene_name": "gmppb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAE9-1", "protein_name": "Dolichyl-phosphate beta-glucosyltransferase", "gene_name": "alg5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NFU6-1", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2", "gene_name": "alg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7Z392-1", "protein_name": "Trafficking protein particle complex subunit 11", "gene_name": "TRAPPC11", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LXA2", "url": "https://www.uniprot.org/uniprotkb/Q1LXA2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26912795", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dolichol-phosphate mannose synthase depletion in zebrafish leads to dystrophic muscle with hypoglycosylated alpha-dystroglycan.", "journal": "Biochem. 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Commun.", "date": "2016", "authors": "Marchese Maria, Pappalardo Andrea, Baldacci Jacopo, Verri Tiziano, Doccini Stefano, Cassandrini Denise, Bruno Claudio, Fiorillo Chiara, Garcia-Gil Mercedes, Bertini Enrico, Pitto Letizia, Santorelli Filippo M", "reference": { "type": "PubMed", "id": "27291147", "url": "https://pubmed.ncbi.nlm.nih.gov/27291147" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LXA2-1", "protein_name": "Dolichol-phosphate mannosyltransferase subunit 3", "gene_name": "dpm3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LXA2", "url": "https://www.uniprot.org/uniprotkb/Q1LXA2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27291147", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "IL-6 Mutation Attenuates Liver Injury Caused by Aeromonas hydrophila Infection by Reducing Oxidative Stress in Zebrafish.", "journal": "Int. J. Mol. 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Mech.", "date": "2009", "authors": "Michailidou Christina, Jones Mary, Walker Paul, Kamarashev Jivko, Kelly Amanda, Hurlstone Adam F L", "reference": { "type": "PubMed", "id": "19470611", "url": "https://pubmed.ncbi.nlm.nih.gov/19470611" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LYG2-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "braf", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8Q8S1-1", "protein_name": "small monomeric GTPase", "gene_name": "kras", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LYG2", "url": "https://www.uniprot.org/uniprotkb/Q1LYG2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19470611", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Duplicated gelsolin family genes in zebrafish: a novel scinderin-like gene (scinla) encodes the major corneal crystallin.", "journal": "FASEB J.", "date": "2007", "authors": "Jia Sujuan, Omelchenko Marina, Garland Donita, Vasiliou Vasilis, Kanungo Jyotshnabala, Spencer Michael, Wolf Yuri, Koonin Eugene, Piatigorsky Joram", "reference": { "type": "PubMed", "id": "17548429", "url": "https://pubmed.ncbi.nlm.nih.gov/17548429" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LYK7-1", "protein_name": "Macrophage-capping protein", "gene_name": "scin", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9P366-1", "protein_name": "Gelsolin", "gene_name": "gsna", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5PMZ3-1", "protein_name": "Macrophage-capping protein", "gene_name": "scinlb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JLJ3-1", "protein_name": "14-3-3 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Exome sequencing of patients with histiocytoid cardiomyopathy reveals a de novo NDUFB11 mutation that plays a role in the pathogenesis of histiocytoid cardiomyopathy.", "journal": "Am. J. Med. Genet. A", "date": "2015", "authors": "Shehata BM, Cundiff CA, Lee K, Sabharwal A, Lalwani MK, Davis AK, Agrawal V, Sivasubbu S, Iannucci GJ, Gibson G", "reference": { "type": "PubMed", "id": "25921236", "url": "https://pubmed.ncbi.nlm.nih.gov/25921236" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LYN0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial", "gene_name": "ndufb11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9NX14-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial", "gene_name": "NDUFB11", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LYN0", "url": "https://www.uniprot.org/uniprotkb/Q1LYN0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25921236", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptomic analysis reveals mitochondrial dysfunction in the pathogenesis of Nager syndrome in sf3b4-depleted zebrafish.", "journal": "Biochim. Biophys. Acta Mol. Basis Dis.", "date": "2024", "authors": "Ulhaq Zulvikar Syambani, Tse William Ka Fai", "reference": { "type": "PubMed", "id": "38508476", "url": "https://pubmed.ncbi.nlm.nih.gov/38508476" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LYN0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial", "gene_name": "ndufb11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S5Q2-1", "protein_name": "Succinate dehydrogenase cytochrome b560 subunit, mitochondrial", "gene_name": "sdhc", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0G2L2Q2-1", "protein_name": "Complex III subunit 9", "gene_name": "uqcr10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7EZ94-1", "protein_name": "glutathione transferase", "gene_name": "gstt1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NWB3-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "sf3b4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LYN0", "url": "https://www.uniprot.org/uniprotkb/Q1LYN0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38508476", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A zebrafish vitellogenin gene (vg3) encodes a novel vitellogenin without a phosvitin domain and may represent a primitive vertebrate vitellogenin gene.", "journal": "Gene", "date": "2000", "authors": "Wang H, Yan T, Tan J T, Gong Z", "reference": { "type": "PubMed", "id": "11054560", "url": "https://pubmed.ncbi.nlm.nih.gov/11054560" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1MTC4-1", "protein_name": "Vitellogenin 2 precursor", "gene_name": "vtg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NG90-1", "protein_name": "Vitellogenin 6 precursor", "gene_name": "vtg6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAN4-1", "protein_name": "Vitellogenin 4 precursor", "gene_name": "vtg4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1MTC4", "url": "https://www.uniprot.org/uniprotkb/Q1MTC4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11054560", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hepatic and extrahepatic expression of vitellogenin genes in the zebrafish, Danio rerio.", "journal": "Gene", "date": "2005", "authors": "Wang Hai, Tan Jacqueline T T, Emelyanov Alexander, Korzh Vladimir, Gong Zhiyuan", "reference": { "type": "PubMed", "id": "15979250", "url": "https://pubmed.ncbi.nlm.nih.gov/15979250" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1MTC4-1", "protein_name": "Vitellogenin 2 precursor", "gene_name": "vtg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6R0-1", "protein_name": "Vitellogenin 5 precursor", "gene_name": "vtg5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NG90-1", "protein_name": "Vitellogenin 6 precursor", "gene_name": "vtg6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GPD5-1", "protein_name": "Vitellogenin 3, phosvitinless isoform X1", "gene_name": "vtg3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1MTC4", "url": "https://www.uniprot.org/uniprotkb/Q1MTC4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15979250", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HNF factors form a network to regulate liver-enriched genes in zebrafish.", "journal": "Dev. Biol.", "date": "2006", "authors": "Cheng Wei, Guo Lin, Zhang Zhenhai, Soo Hui Meng, Wen Chaoming, Wu Wei, Peng Jinrong", "reference": { "type": "PubMed", "id": "16631158", "url": "https://pubmed.ncbi.nlm.nih.gov/16631158" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1MTC4-1", "protein_name": "Vitellogenin 2 precursor", "gene_name": "vtg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G007-1", "protein_name": "Haptoglobin isoform X1", "gene_name": "hp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B6J4-1", "protein_name": "C3/C5 convertase", "gene_name": "cfb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A565-1", "protein_name": "Complement component C9", "gene_name": "c9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A5L6-1", "protein_name": "Fibrinogen alpha chain precursor", "gene_name": "fga", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QEQ1-1", "protein_name": "Apolipoprotein C-II", "gene_name": "apoc2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q890-1", "protein_name": "Plasminogen", "gene_name": "plg", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NYL5-1", "protein_name": "Alanine aminotransferase 2-like", "gene_name": "gpt2l; gpt", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z906-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "itih3b.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QCY4-1", "protein_name": "Nuclear protein 1b", "gene_name": "nupr1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QDI1-1", "protein_name": "Apolipoprotein C-I isoform 1 precursor", "gene_name": "apoc1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B6R5-1", "protein_name": "Plasma protease C1 inhibitor isoform X1", "gene_name": "serping1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B559-1", "protein_name": "Heparin cofactor 2 isoform X1; Heparin cofactor 2 precursor", "gene_name": "serpind1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6YZH0-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "slc38a4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2QCI8-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 12", "gene_name": "med12", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IKF0-1", "protein_name": "Apolipoprotein A-Ib precursor", "gene_name": "apoa1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PKY8-1", "protein_name": "Alpha-2-HS-glycoprotein 1 precursor", "gene_name": "ahsg1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A7F1-1", "protein_name": "Prostate-associated microseminoprotein", "gene_name": "msmbl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N8S6-1", "protein_name": "Cerebellin 10 precursor", "gene_name": "cbln10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8DZH1-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B7ZD15-1", "protein_name": "Olfactomedin 1b isoform 1", "gene_name": "olfm1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RI09-1", "protein_name": "Nucleoprotein TPR", "gene_name": "tprb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RH29-1", "protein_name": "Inter-alpha-trypsin inhibitor heavy chain H2 precursor", "gene_name": "itih2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B812-1", "protein_name": "Uncharacterized protein LOC100007703 precursor; Uncharacterized protein isoform X1", "gene_name": "si:ch1073-464p5.2; wu:fb61g08; zgc:153921", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NWJ8-1", "protein_name": "1.14.14.1; Cytochrome P450 2AA6", "gene_name": "cyp2aa6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N7V0N1-1", "protein_name": "Serine (Or cysteine) proteinase inhibitor, clade A (Alpha-1 antiproteinase, antitrypsin), member 1, like precursor", "gene_name": "serpina1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE90-1", "protein_name": "Fetuin B precursor", "gene_name": "fetub", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q5D8-1", "protein_name": "Vitronectin b precursor", "gene_name": "vtnb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F8W5C3-1", "protein_name": "Thyroxine-binding globulin", "gene_name": "serpina7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUM9-1", "protein_name": "Dynein light intermediate chain", "gene_name": "dync1li1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DGK2-1", "protein_name": "L-lactate dehydrogenase B-B chain", "gene_name": "ldhbb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NXE0-1", "protein_name": "Apolipoprotein M", "gene_name": "apom", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1MTC4", "url": "https://www.uniprot.org/uniprotkb/Q1MTC4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16631158", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 32 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hepatic and extrahepatic expression of estrogen-responsive genes in male adult zebrafish (Danio rerio) as biomarkers of short-term exposure to 17beta-estradiol.", "journal": "Environ. Monit. Assess.", "date": "2008", "authors": "Jin Yuanxiang, Wang Wanyuan, Sheng G Daniel, Liu Weiping, Fu Zhengwei", "reference": { "type": "PubMed", "id": "18060571", "url": "https://pubmed.ncbi.nlm.nih.gov/18060571" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1MTC4-1", "protein_name": "Vitellogenin 2 precursor", "gene_name": "vtg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NG90-1", "protein_name": "Vitellogenin 6 precursor", "gene_name": "vtg6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1MTC4", "url": "https://www.uniprot.org/uniprotkb/Q1MTC4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18060571", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Induction of hepatic estrogen-responsive gene transcription by permethrin enantiomers in male adult zebrafish.", "journal": "Aquat. Toxicol.", "date": "2008", "authors": "Jin Yuanxiang, Wang Wanyuan, Xu Chao, Fu Zhengwei, Liu Weiping", "reference": { "type": "PubMed", "id": "18499281", "url": "https://pubmed.ncbi.nlm.nih.gov/18499281" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1MTC4-1", "protein_name": "Vitellogenin 2 precursor", "gene_name": "vtg2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1MTC4", "url": "https://www.uniprot.org/uniprotkb/Q1MTC4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18499281", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Vitellogenin 1 is essential for fish reproduction by transporting DHA-containing phosphatidylcholine from liver to ovary.", "journal": "Biochim Biophys Acta Mol Cell Biol Lipids", "date": "2023", "authors": "Sun Sheng-Xiang, Liu Yi-Chan, Limbu Samwel M, Li Dong-Liang, Chen Li-Qiao, Zhang Mei-Ling, Yin Zhan, Du Zhen-Yu", "reference": { "type": "PubMed", "id": "36708962", "url": "https://pubmed.ncbi.nlm.nih.gov/36708962" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1MTC4-1", "protein_name": "Vitellogenin 2 precursor", "gene_name": "vtg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JJK4-1", "protein_name": "Elongation of very long chain fatty acids protein", "gene_name": "elovl8b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5N8-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "apoa4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6R0-1", "protein_name": "Vitellogenin 5 precursor", "gene_name": "vtg5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NG90-1", "protein_name": "Vitellogenin 6 precursor", "gene_name": "vtg6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAN4-1", "protein_name": "Vitellogenin 4 precursor", "gene_name": "vtg4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB12XWH9-1", "protein_name": "Carboxylic ester hydrolase", "gene_name": "cel.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GPD5-1", "protein_name": "Vitellogenin 3, phosvitinless isoform X1", "gene_name": "vtg3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1MTC4", "url": "https://www.uniprot.org/uniprotkb/Q1MTC4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36708962", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rescue of bmp15 deficiency in zebrafish by mutation of inha reveals mechanisms of BMP15 regulation of folliculogenesis.", "journal": "PLoS Genet.", "date": "2023", "authors": "Zhai Yue, Zhang Xin, Zhao Cheng, Geng Ruijing, Wu Kun, Yuan Mingzhe, Ai Nana, Ge Wei", "reference": { "type": "PubMed", "id": "37713421", "url": "https://pubmed.ncbi.nlm.nih.gov/37713421" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1MTC4-1", "protein_name": "Vitellogenin 2 precursor", "gene_name": "vtg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QTJ4-1", "protein_name": "Low-density lipoprotein receptor-related protein 5 isoform 1 precursor", "gene_name": "lrp5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QZL9-1", "protein_name": "WAS/WASL-interacting protein family member 1a", "gene_name": "wipf1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NV12-1", "protein_name": "Low-density lipoprotein receptor-related protein 2", "gene_name": "lrp2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LYE4-1", "protein_name": "Inhibin alpha chain", "gene_name": "inha", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6R0-1", "protein_name": "Vitellogenin 5 precursor", "gene_name": "vtg5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NG90-1", "protein_name": "Vitellogenin 6 precursor", "gene_name": "vtg6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6PEI8-1", "protein_name": "Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D", "gene_name": "hhipl1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAN4-1", "protein_name": "Vitellogenin 4 precursor", "gene_name": "vtg4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PEV5-1", "protein_name": "Ras-related protein Rab-14", "gene_name": "rab14l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GPD5-1", "protein_name": "Vitellogenin 3, phosvitinless isoform X1", "gene_name": "vtg3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1MTC4", "url": "https://www.uniprot.org/uniprotkb/Q1MTC4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37713421", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genomic disturbance of vitellogenin 2 (vtg2) leads to vitellin membrane deficiencies and significant mortalities at early stages of embryonic development in zebrafish (Danio rerio).", "journal": "Sci. Rep.", "date": "2023", "authors": "Yilmaz Ozlem, Com Emmanuelle, Pineau Charles, Bobe Julien", "reference": { "type": "PubMed", "id": "37914813", "url": "https://pubmed.ncbi.nlm.nih.gov/37914813" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1MTC4-1", "protein_name": "Vitellogenin 2 precursor", "gene_name": "vtg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7SY09-1", "protein_name": "Adhesion G protein-coupled receptor L4", "gene_name": "adgrl4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6R0-1", "protein_name": "Vitellogenin 5 precursor", "gene_name": "vtg5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NG90-1", "protein_name": "Vitellogenin 6 precursor", "gene_name": "vtg6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAN4-1", "protein_name": "Vitellogenin 4 precursor", "gene_name": "vtg4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GPD5-1", "protein_name": "Vitellogenin 3, phosvitinless isoform X1", "gene_name": "vtg3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1MTC4", "url": "https://www.uniprot.org/uniprotkb/Q1MTC4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37914813", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lrp13a and Lrp13b serve as vitellogenin receptors in the ovary of zebrafish.", "journal": "Biol. Reprod.", "date": "2024", "authors": "Liu Zhiquan, Zhang Nan, Wang Chuangxin, Shi Lina, Hu Yixuan, Wang Yamei, Li Jianzhen", "reference": { "type": "PubMed", "id": "38660750", "url": "https://pubmed.ncbi.nlm.nih.gov/38660750" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1MTC4-1", "protein_name": "Vitellogenin 2 precursor", "gene_name": "vtg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0G2KWX9-1", "protein_name": "Low-density lipoprotein receptor-related protein 3 precursor", "gene_name": "lrp3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QTJ4-1", "protein_name": "Low-density lipoprotein receptor-related protein 5 isoform 1 precursor", "gene_name": "lrp5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NV12-1", "protein_name": "Low-density lipoprotein receptor-related protein 2", "gene_name": "lrp2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6R0-1", "protein_name": "Vitellogenin 5 precursor", "gene_name": "vtg5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NG90-1", "protein_name": "Vitellogenin 6 precursor", "gene_name": "vtg6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAN4-1", "protein_name": "Vitellogenin 4 precursor", "gene_name": "vtg4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZZT0-1", "protein_name": "Low density lipoprotein receptor a precursor", "gene_name": "ldlra", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B1M8-1", "protein_name": "Very low-density lipoprotein receptor", "gene_name": "vldlr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B7G6-1", "protein_name": "Low-density lipoprotein receptor-related protein 11", "gene_name": "lrp11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GPD5-1", "protein_name": "Vitellogenin 3, phosvitinless isoform X1", "gene_name": "vtg3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1MTC4", "url": "https://www.uniprot.org/uniprotkb/Q1MTC4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38660750", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Y box-binding protein 1 regulates zebrafish folliculogenesis partly through p21-mediated control of follicle cell proliferation.", "journal": "Development", "date": "2024", "authors": "Zhu Bo, Zhang Zhiwei, Pardeshi Lakhansing, Chen Yingying, Ge Wei", "reference": { "type": "PubMed", "id": "39470059", "url": "https://pubmed.ncbi.nlm.nih.gov/39470059" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1MTC4-1", "protein_name": "Vitellogenin 2 precursor", "gene_name": "vtg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NC60-1", "protein_name": "Cyclin-dependent kinase 4", "gene_name": "cdk4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6R0-1", "protein_name": "Vitellogenin 5 precursor", "gene_name": "vtg5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NG90-1", "protein_name": "Vitellogenin 6 precursor", "gene_name": "vtg6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAN4-1", "protein_name": "Vitellogenin 4 precursor", "gene_name": "vtg4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GPD5-1", "protein_name": "Vitellogenin 3, phosvitinless isoform X1", "gene_name": "vtg3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1MTC4", "url": "https://www.uniprot.org/uniprotkb/Q1MTC4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39470059", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zinc-finger gene Fez in the olfactory sensory neurons regulates development of the olfactory bulb non-cell-autonomously.", "journal": "Development", "date": "2006", "authors": "Hirata T, Nakazawa M, Yoshihara S, Miyachi H, Kitamura K, Yoshihara Y, Hibi M", "reference": { "type": "PubMed", "id": "16540508", "url": "https://pubmed.ncbi.nlm.nih.gov/16540508" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q25C93-1", "protein_name": "Fez family zinc finger protein 1", "gene_name": "fezf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q0VDQ9-1", "protein_name": "Fez family zinc finger protein 1", "gene_name": "Fezf1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in DZIP1L, which encodes a ciliary-transition-zone protein, cause autosomal recessive polycystic kidney disease.", "journal": "Nature genetics", "date": "2017", "authors": "Lu H, Galeano MCR, Ott E, Kaeslin G, Kausalya PJ, Kramer C, Ortiz-Bruchle N, Hilger N, Metzis V, Hiersche M, Tay SY, Tunningley R, Vij S, Courtney AD, Whittle B, Wuhl E, Vester U, Hartleben B, Neuber S, Frank V, Little MH, Epting D, Papathanasiou P, Perkins AC, Wright GD, Hunziker W, Gee HY, Otto EA, Zerres K, Hildebrandt F, Roy S, Wicking C, Bergmann C", "reference": { "type": "PubMed", "id": "28530676", "url": "https://pubmed.ncbi.nlm.nih.gov/28530676" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q32PN7-1", "protein_name": "Cilium assembly protein DZIP1L", "gene_name": "dzip1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q499E4-1", "protein_name": "Cilium assembly protein DZIP1L", "gene_name": "Dzip1l", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IYY4-1", "protein_name": "Cilium assembly protein DZIP1L", "gene_name": "DZIP1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15019-1", "protein_name": "Septin-2", "gene_name": "SEPTIN2", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q32PN7", "url": "https://www.uniprot.org/uniprotkb/Q32PN7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "mutagenesis": [ { "start_pos": 375, "end_pos": 774, "sequence_org": "QSQRHINALRAQLQEQARLIESQEETIQTLSLRKVEEVQEMPKAVATEEDSSEEELEASLEERQEQRKVLAALRKNPTWLKQFRPILEDTLEEKLEGLGIKRDTKGISAQTVRRLEPLLRTQREQIARSFREFPSLREKLNKEVSSRVKQRWESTTQPDGQPPVKSQRVTLATREVRPKTRTLTVALPSKPAEPSTPTLQGHSSHGPGLTQVSTPIPRPRVHGPSSTPVSPGSGLSSTPPFSSEEEPEGDVVQRVSLQPPKVLPRSAAKPEDNWGWSDSETSEESAQPPGKGSGGLASSGTLVQSIVKNLEKQLETPAKKPSGGVNMFLRPNAALQRASTPARKSQLSEDESDVEISSLEDLSQDLGQKGKPKPLSHSKLPEKFDVSPWSSGSRPRIPGW", "sequence_mut": "", "comment": "In wpy; widespread embryonic dysmorphologies, including highly penetrant polydactyly of all four limbs as well as craniofacial defects. Mice develop cystic kidney disease.", "evidence": [ { "database": "UniProtKB", "id": "Q499E4", "url": "https://www.uniprot.org/uniprotkb/Q499E4" }, { "database": "PubMed", "id": "28530676", "url": "https://pubmed.ncbi.nlm.nih.gov/28530676" } ], "uniprot_canonical_ac": "Q499E4-1" } ], "record_id": "pubmed.28530676", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Calcitonin receptor family evolution and fishing for function using in silico promoter analysis.", "journal": "Gen. Comp. Endocrinol.", "date": "2014", "authors": "Martins Rute, Vieira Flobela A, Power Deborah M", "reference": { "type": "PubMed", "id": "24815885", "url": "https://pubmed.ncbi.nlm.nih.gov/24815885" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q32PV0-1", "protein_name": "PTB domain-containing engulfment adapter protein 1", "gene_name": "gulp1a; gulp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S6C1-1", "protein_name": "Tissue factor pathway inhibitor", "gene_name": "tfpia", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NG75-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "marchf7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6IQT6-1", "protein_name": "BET1 homolog", "gene_name": "bet1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NTE7-1", "protein_name": "Collagen, type V, alpha 2a precursor", "gene_name": "col5a2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q32PV0", "url": "https://www.uniprot.org/uniprotkb/Q32PV0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24815885", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of osteocalcin (BGP) and matrix Gla protein (MGP) fish specific antibodies: validation for immunodetection studies in lower vertebrates.", "journal": "Calcif. Tissue Int.", "date": "2004", "authors": "Simes D C, Williamson M K, Schaff B J, Gavaia P J, Ingleton P M, Price P A, Cancela M L", "reference": { "type": "PubMed", "id": "14668966", "url": "https://pubmed.ncbi.nlm.nih.gov/14668966" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4G6A6-1", "protein_name": "Bone Gla protein", "gene_name": "bglap", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P83238-1", "protein_name": "Osteocalcin", "gene_name": "bglap", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4G6A6", "url": "https://www.uniprot.org/uniprotkb/Q4G6A6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.14668966", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolution of matrix and bone gamma-carboxyglutamic acid proteins in vertebrates.", "journal": "J. Biol. 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Bone Miner. 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{ "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential transcriptional modulation of duplicated fatty acid-binding protein genes by dietary fatty acids in zebrafish (Danio rerio): evidence for subfunctionalization or neofunctionalization of duplicated genes.", "journal": "BMC Evol. Biol.", "date": "2009", "authors": "Karanth Santhosh, Lall Santosh P, Denovan-Wright Eileen M, Wright Jonathan M", "reference": { "type": "PubMed", "id": "19725974", "url": "https://pubmed.ncbi.nlm.nih.gov/19725974" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4VBT1-1", "protein_name": "Fatty acid binding protein 1-B.1", "gene_name": "fabp1b.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4VBT1", "url": "https://www.uniprot.org/uniprotkb/Q4VBT1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19725974", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tandem duplication of the fabp1b gene and subsequent divergence of the tissue-specific distribution of fabp1b.1 and fabp1b.2 transcripts in zebrafish (Danio rerio).", "journal": "Genome", "date": "2009", "authors": "Karanth Santhosh, Denovan-Wright Eileen M, Thisse Christine, Thisse Bernard, Wright Jonathan M", "reference": { "type": "PubMed", "id": "19953126", "url": "https://pubmed.ncbi.nlm.nih.gov/19953126" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4VBT1-1", "protein_name": "Fatty acid binding protein 1-B.1", "gene_name": "fabp1b.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4VBT1", "url": "https://www.uniprot.org/uniprotkb/Q4VBT1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19953126", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phylogenetic conservation of the makorin-2 gene, encoding a multiple zinc-finger protein, antisense to the raf1 proto-oncogene.", "journal": "Genomics", "date": "2001", "authors": "Gray TA, Azama K, Whitmore K, Min A, Abe S, Nicholls RD", "reference": { "type": "PubMed", "id": "11597136", "url": "https://pubmed.ncbi.nlm.nih.gov/11597136" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4VBT5-1", "protein_name": "Probable E3 ubiquitin-protein ligase makorin-1", "gene_name": "mkrn1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q99N57-1", "protein_name": "RAF proto-oncogene serine/threonine-protein kinase", "gene_name": "Raf1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H000-1", "protein_name": "E3 ubiquitin-protein ligase makorin-2", "gene_name": "MKRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ERV1-1", "protein_name": "E3 ubiquitin-protein ligase makorin-2", "gene_name": "Mkrn2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DFG8-1", "protein_name": "E3 ubiquitin-protein ligase makorin-2", "gene_name": "mkrn2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4VBT5", "url": "https://www.uniprot.org/uniprotkb/Q4VBT5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11597136", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutant-specific gene programs in the zebrafish.", "journal": "Blood", "date": "2005", "authors": "Weber Gerhard J, Choe Sung E, Dooley Kimberly A, Paffett-Lugassy No\u00eblle N, Zhou Yi, Zon Leonard I", "reference": { "type": "PubMed", "id": "15827125", "url": "https://pubmed.ncbi.nlm.nih.gov/15827125" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q502I6-1", "protein_name": "Cytochrome b5 reductase 4", "gene_name": "cyb5r4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PBT4-1", "protein_name": "Dual specificity protein phosphatase", "gene_name": "dusp5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q502I6", "url": "https://www.uniprot.org/uniprotkb/Q502I6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15827125", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Discovery and characterization of novel vascular and hematopoietic genes downstream of etsrp in zebrafish.", "journal": "PLoS ONE", "date": "2009", "authors": "Gomez Gustavo A, Veldman Matthew B, Zhao Yan, Burgess Shawn, Lin Shuo", "reference": { "type": "PubMed", "id": "19308258", "url": "https://pubmed.ncbi.nlm.nih.gov/19308258" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q502I6-1", "protein_name": "Cytochrome b5 reductase 4", "gene_name": "cyb5r4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G812-1", "protein_name": "Nexilin isoform X1", "gene_name": "nexn", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QB25-1", "protein_name": "Rho guanine nucleotide exchange factor 9", "gene_name": "arhgef9b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IMY5-1", "protein_name": "Testican-2", "gene_name": "spock3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8Q8Y9-1", "protein_name": "Septin 9b isoform a", "gene_name": "septin9b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A5H9-1", "protein_name": "Serglycin precursor", "gene_name": "srgn", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NYR6-1", "protein_name": "calpain-2", "gene_name": "capn8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QM54-1", "protein_name": "Ras homolog family member Ub", "gene_name": "rhoub", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B7H0-1", "protein_name": "Apolipoprotein Bb, tandem duplicate 1 isoform X1", "gene_name": "apobb.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A7B9-1", "protein_name": "Tyrosine-protein kinase", "gene_name": "yrk", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q502I6", "url": "https://www.uniprot.org/uniprotkb/Q502I6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19308258", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Retinoic acid signalling links left-right asymmetric patterning and bilaterally symmetric somitogenesis in the zebrafish embryo.", "journal": "Nature", "date": "2005", "authors": "Kawakami Yasuhiko, Raya Angel, Raya R Marina, Rodr\u00edguez-Esteban Concepci\u00f3n, Izpis\u00faa Belmonte Juan Carlos", "reference": { "type": "PubMed", "id": "15889082", "url": "https://pubmed.ncbi.nlm.nih.gov/15889082" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q50D79-1", "protein_name": "Homeobox protein unc-4 homolog", "gene_name": "uncx", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7SYN5-1", "protein_name": "Retinoic acid receptor RXR-beta-A", "gene_name": "rxrba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q90416-1", "protein_name": "Retinoic acid receptor RXR-gamma-A", "gene_name": "rxrga", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A7H0-1", "protein_name": "Dynein axonemal heavy chain 17", "gene_name": "dnah9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q50D79", "url": "https://www.uniprot.org/uniprotkb/Q50D79" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15889082", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and expression pattern of mago nashi during zebrafish development.", "journal": "Gene expression patterns : GEP", "date": "2004-12", "authors": "Pozzoli Ombretta, Gilardelli Claudio N, Sordino Paolo, Doniselli Sveva, Lamia Carla Lora, Cotelli Franco", "reference": { "type": "PubMed", "id": "15567724", "url": "https://pubmed.ncbi.nlm.nih.gov/15567724" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q566Y8-1", "protein_name": "Protein mago nashi homolog", "gene_name": "magoh", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q566Y8", "url": "https://www.uniprot.org/uniprotkb/Q566Y8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15567724", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nonsense mutation in the WDR73 gene is associated with Galloway-Mowat syndrome.", "journal": "J. Med. Genet.", "date": "2015", "authors": "Ben-Omran T, Fahiminiya S, Sorfazlian N, Almuriekhi M, Nawaz Z, Nadaf J, Khadija KA, Zaineddin S, Kamel H, Majewski J, Tropepe V", "reference": { "type": "PubMed", "id": "25873735", "url": "https://pubmed.ncbi.nlm.nih.gov/25873735" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q567G2-1", "protein_name": "Integrator complex assembly factor WDR73", "gene_name": "wdr73", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6P4I2-1", "protein_name": "Integrator complex assembly factor WDR73", "gene_name": "WDR73", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q567G2", "url": "https://www.uniprot.org/uniprotkb/Q567G2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25873735", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Akt2 modulates glucose availability and downstream apoptotic pathways during development.", "journal": "J. Biol. Chem.", "date": "2010", "authors": "Jensen Penny J, Gunter Laura B, Carayannopoulos Mary O", "reference": { "type": "PubMed", "id": "20356836", "url": "https://pubmed.ncbi.nlm.nih.gov/20356836" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q567V5-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "snrpd2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q567V5", "url": "https://www.uniprot.org/uniprotkb/Q567V5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20356836", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "On the crucial cerebellar wound healing-related pathways and their cross-talks after traumatic brain injury in Danio rerio.", "journal": "PLoS ONE", "date": "2014", "authors": "Wu Chia-Chou, Tsai Tsung-Han, Chang Chieh, Lee Tian-Thai, Lin Che, Cheng Irene Han-Juo, Sun Mu-Chien, Chuang Yung-Jen, Chen Bor-Sen", "reference": { "type": "PubMed", "id": "24926785", "url": "https://pubmed.ncbi.nlm.nih.gov/24926785" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q567V5-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "snrpd2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BBP5-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "zgc:113263", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S585-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "mapre1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q5J6-1", "protein_name": "Adenylate cyclase type 2", "gene_name": "adcy2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q6W4-1", "protein_name": "Cyclin-dependent kinase 5 activator", "gene_name": "cdk5r1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q8C7-1", "protein_name": "T cell activation RhoGTPase activating protein a", "gene_name": "tagapa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S8J8-1", "protein_name": "Rho GTPase-activating protein 15", "gene_name": "arhgap15", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q501X2-1", "protein_name": "Centrosomal protein of 72 kDa", "gene_name": "cep72", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FC32-1", "protein_name": "Tubulin beta chain", "gene_name": "tubb1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NXI0-1", "protein_name": "6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase 4b isoform 1", "gene_name": "pfkfb4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8Q7T0-1", "protein_name": "Tyrosine-protein kinase", "gene_name": "fes", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P3D7-1", "protein_name": "Histone RNA hairpin-binding protein isoform 1", "gene_name": "slbp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BHS4-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna15.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GPM4-1", "protein_name": "cAMP-dependent protein kinase", "gene_name": "prkacba", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q567V5", "url": "https://www.uniprot.org/uniprotkb/Q567V5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24926785", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]