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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish models of candidate human epilepsy-associated genes provide evidence of hyperexcitability.", "journal": "IScience", "date": "2024", "authors": "LaCoursiere Christopher Mark, Ullmann Jeremy F P, Koh Hyun Yong, Turner Laura, Baker Cristina M, Robens Barbara, Shao Wanqing, Rotenberg Alexander, McGraw Christopher M, Poduri Annapurna H", "reference": { "type": "PubMed", "id": "39021799", "url": "https://pubmed.ncbi.nlm.nih.gov/39021799" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QXF4-1", "protein_name": "THO complex subunit 2", "gene_name": "thoc2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QYZ6-1", "protein_name": "Pyruvate carboxylase", "gene_name": "pcxb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUA6-1", "protein_name": "Triple functional domain protein", "gene_name": "trioa; trio", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6P271-1", "protein_name": "Sodium/potassium-transporting ATPase subunit alpha", "gene_name": "atp1a3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JI08-1", "protein_name": "2-oxoglutarate dehydrogenase complex component E1", "gene_name": "ogdha", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7EZD1-1", "protein_name": "Neurobeachin", "gene_name": "nbeaa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7EZE2-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B", "gene_name": "stt3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4INZ4-1", "protein_name": "Calcium channel, voltage-dependent, gamma subunit 2b", "gene_name": "cacng2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NV16-1", "protein_name": "E3 ubiquitin-protein ligase UBR5", "gene_name": "ubr5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PQC3-1", "protein_name": "Chromodomain-helicase-DNA-binding protein 2 isoform X1", "gene_name": "chd2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PRM2-1", "protein_name": "Chromodomain-helicase-DNA-binding protein 4a isoform X1", "gene_name": "chd4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9Q3C1-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PQY4-1", "protein_name": "Host cell factor 1", "gene_name": "hcfc1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B960-1", "protein_name": "E3 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"protein_name": "plus-end-directed kinesin ATPase", "gene_name": "kif1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUN9-1", "protein_name": "Gamma-aminobutyric acid type B receptor subunit 2 precursor", "gene_name": "gabbr2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LY89-1", "protein_name": "Rho-related GTP-binding protein RhoG", "gene_name": "rhoga", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5VSI1-1", "protein_name": "A-type voltage-gated potassium channel KCND1", "gene_name": "kcnd2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BBT3-1", "protein_name": "ATP-binding cassette sub-family C member 9 isoform X1", "gene_name": "abcc9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AJF7-1", "protein_name": "FERM domain-containing protein 4A isoform X1", "gene_name": "frmd4a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QXF4", "url": "https://www.uniprot.org/uniprotkb/F1QXF4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39021799", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 26 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of human D lactate dehydrogenase deficiency.", "journal": "Nature communications", "date": "2019", "authors": "Monroe GR, van Eerde AM, Tessadori F, Duran KJ, Savelberg SMC, van Alfen JC, Terhal PA, van der Crabben SN, Lichtenbelt KD, Fuchs SA, Gerrits J, van Roosmalen MJ, van Gassen KL, van Aalderen M, Koot BG, Oostendorp M, Duran M, Visser G, de Koning TJ, Cali F, Bosco P, Geleijns K, de Sain-van der Velden MGM, Knoers NV, Bakkers J, Verhoeven-Duif NM, van Haaften G, Jans JJ", "reference": { "type": "PubMed", "id": "30931947", "url": "https://pubmed.ncbi.nlm.nih.gov/30931947" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QXM5-1", "protein_name": "D-lactate dehydrogenase, mitochondrial", "gene_name": "ldhd", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q86WU2-1", "protein_name": "D-lactate dehydrogenase, mitochondrial", "gene_name": "LDHD", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QXM5", "url": "https://www.uniprot.org/uniprotkb/F1QXM5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30931947", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolution of JAK-STAT pathway components: mechanisms and role in immune system development.", "journal": "PLoS ONE", "date": "2012", "authors": "Liongue Clifford, O'Sullivan Lynda A, Trengove Monique C, Ward Alister C", "reference": { "type": "PubMed", "id": "22412924", "url": "https://pubmed.ncbi.nlm.nih.gov/22412924" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QYC4-1", "protein_name": "Nuclear envelope integral membrane protein 2", "gene_name": "nemp2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PNN9-1", "protein_name": "WD repeat and HMG-box DNA-binding protein 1", "gene_name": "wdhd1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B6X5-1", "protein_name": "Suppressor of cytokine signaling 7", "gene_name": "socs7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FGQ8-1", "protein_name": "GTP cyclohydrolase 1", "gene_name": "gch1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IXF6-1", "protein_name": "Histone acetyltransferase KAT2A", "gene_name": "kat2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R4C4-1", "protein_name": "E3 SUMO-protein ligase PIAS4-A", "gene_name": "pias4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NZ93-1", "protein_name": "Signal transducer and activator of transcription", "gene_name": "stat2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F4C0-1", "protein_name": "ubiquitinyl hydrolase 1", "gene_name": "usp36", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LWI2-1", "protein_name": "glutaminase", "gene_name": "glsa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PZA5-1", "protein_name": "Ribonucleoprotein PTB-binding 1", "gene_name": "raver1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NIJ0-1", "protein_name": "NGFI-A-binding protein 1b", "gene_name": "nab1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QEK4-1", "protein_name": "Large ribosomal subunit protein mL45", "gene_name": "mrpl45", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1REB9-1", "protein_name": "TATA element modulatory factor", "gene_name": "tmf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6X6-1", "protein_name": "Mothers against decapentaplegic homolog", "gene_name": "smad6a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BFB6-1", "protein_name": "Signal transducer and activator of transcription", "gene_name": "stat4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8JHJ2-1", "protein_name": "ATP-dependent RNA helicase DDX55", "gene_name": "ddx55", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BCP8-1", "protein_name": "E3 SUMO-protein ligase PIAS2 isoform X1", "gene_name": "pias2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BE84-1", "protein_name": "Small conductance calcium-activated potassium channel protein 1b isoform X1", "gene_name": "kcnn1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AM67-1", "protein_name": "NGFI-A-binding protein 1a isoform X1", "gene_name": "nab1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UYT5-1", "protein_name": "Major facilitator superfamily domain-containing protein 6-B", "gene_name": "mfsd6b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QYC4", "url": "https://www.uniprot.org/uniprotkb/F1QYC4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22412924", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential localization and identification of a critical aspartate suggest non-redundant proteolytic functions of the presenilin homologues SPPL2b and SPPL3.", "journal": "J. Biol. Chem.", "date": "2005", "authors": "Krawitz P, Haffner C, Fluhrer R, Steiner H, Schmid B, Haass C", "reference": { "type": "PubMed", "id": "15998642", "url": "https://pubmed.ncbi.nlm.nih.gov/15998642" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QYI0-1", "protein_name": "Signal peptide peptidase-like 2B", "gene_name": "sppl2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8TCT9-1", "protein_name": "Signal peptide peptidase", "gene_name": "HM13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCT6-2", "protein_name": "Signal peptide peptidase-like 3", "gene_name": "SPPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCT7-1", "protein_name": "Signal peptide peptidase-like 2B", "gene_name": "SPPL2B", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QYI0", "url": "https://www.uniprot.org/uniprotkb/F1QYI0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15998642", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cellular functions of gamma-secretase-related proteins.", "journal": "Neurodegener. Dis.", "date": "2006", "authors": "Haffner Christof, Haass Christian", "reference": { "type": "PubMed", "id": "17047369", "url": "https://pubmed.ncbi.nlm.nih.gov/17047369" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QYI0-1", "protein_name": "Signal peptide peptidase-like 2B", "gene_name": "sppl2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QYI0", "url": "https://www.uniprot.org/uniprotkb/F1QYI0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17047369", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish blowout provides genetic evidence for Patched1-mediated negative regulation of Hedgehog signaling within the proximal optic vesicle of the vertebrate eye.", "journal": "Dev. Biol.", "date": "2008", "authors": "Lee Jiwoon, Willer Jason R, Willer Gregory B, Smith Kierann, Gregg Ronald G, Gross Jeffrey M", "reference": { "type": "PubMed", "id": "18479681", "url": "https://pubmed.ncbi.nlm.nih.gov/18479681" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QYM3-1", "protein_name": "V-type proton ATPase 21 kDa proteolipid subunit c''", "gene_name": "atp6v0b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QYM3", "url": "https://www.uniprot.org/uniprotkb/F1QYM3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18479681", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Brain transcriptome analysis of a familial Alzheimer's disease-like mutation in the zebrafish presenilin 1 gene implies effects on energy production.", "journal": "Mol. Brain", "date": "2019", "authors": "Newman Morgan, Hin Nhi, Pederson Stephen, Lardelli Michael", "reference": { "type": "PubMed", "id": "31053140", "url": "https://pubmed.ncbi.nlm.nih.gov/31053140" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QYM3-1", "protein_name": "V-type proton ATPase 21 kDa proteolipid subunit c''", "gene_name": "atp6v0b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F0Z8-1", "protein_name": "Carboxylesterase notum2", "gene_name": "notum2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F211-1", "protein_name": "Tetratricopeptide repeat protein 17", "gene_name": "ttc17", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PEI7-1", "protein_name": "CTP synthase 1", "gene_name": "ctps1a; ctps1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S6S7-1", "protein_name": "ETS translocation variant 5a isoform 1; ETS translocation variant 5a isoform X1", "gene_name": "etv5a", "tax_name": "Zebrafish" }, 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"protein_name": "Ribonuclease H2 subunit C", "gene_name": "rnaseh2c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q4T4-1", "protein_name": "HUWE1-associated protein modifying stress responses 1", "gene_name": "hapstr1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R6J6-1", "protein_name": "Transmembrane protein 204", "gene_name": "tmem204", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N488-1", "protein_name": "Protocadherin 1 gamma c 5 precursor", "gene_name": "pcdh1gc5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5PMT9-1", "protein_name": "C-C chemokine receptor type 6a", "gene_name": "ccr6a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WVU0-1", "protein_name": "F-box-like/WD repeat-containing protein TBL1XR1b", "gene_name": "tbl1xr1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LV73-1", "protein_name": "Solute carrier organic anion transporter family member", "gene_name": "slco3a1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5SPJ8-1", "protein_name": "Exportin-T", "gene_name": "xpot", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LWV0-1", "protein_name": "Glutaminyl-peptide cyclotransferase", "gene_name": "qpctla", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6YX82-1", "protein_name": "AP-5 complex subunit zeta-1 isoform X1", "gene_name": "ap5z1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NDC2-1", "protein_name": "ATPase family AAA domain-containing protein 5b", "gene_name": "atad5b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NG75-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "marchf7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2CEZ8-1", "protein_name": "Ankyrin repeat and SOCS box protein 12", "gene_name": "asb12a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q5A9-1", "protein_name": "Ubiquitin conjugation factor E4 B", "gene_name": "ube4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QGH2-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 6", "gene_name": "bloc1s6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QJE0-1", "protein_name": "Ubiquinol-cytochrome c reductase core protein 2a", "gene_name": "uqcrc2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R300-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "snrpa1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R8C3-1", "protein_name": "XK-related protein", "gene_name": "xkr6b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB40E7W4-1", "protein_name": "PTB-containing, cubilin and LRP1-interacting protein", "gene_name": "pid1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8QL27-1", "protein_name": "Carbohydrate sulfotransferase", "gene_name": "chst12a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8QQN0-1", "protein_name": "Solute carrier family 13 member 5a 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"THUMP domain-containing protein 1", "gene_name": "thumpd1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P317-1", "protein_name": "Uncharacterized protein LOC799862 isoform 1; Uncharacterized protein isoform X1", "gene_name": "si:ch1073-291c23.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QYM3", "url": "https://www.uniprot.org/uniprotkb/F1QYM3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31053140", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNA-Seq reveals differential expression profiles and functional annotation of genes involved in retinal degeneration in Pde6c mutant Danio rerio.", "journal": "BMC Genomics", "date": "2020", "authors": "Saddala Madhu Sudhana, Lennikov Anton, Bouras Adam, Huang Hu", "reference": { "type": "PubMed", "id": "32033529", "url": "https://pubmed.ncbi.nlm.nih.gov/32033529" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QYM3-1", "protein_name": "V-type proton ATPase 21 kDa proteolipid subunit c''", "gene_name": "atp6v0b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LYG2-1", "protein_name": "non-specific 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"protein_name": "V-type proton ATPase subunit G", "gene_name": "atp6v1g1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N7Z8-1", "protein_name": "Tubulin beta chain", "gene_name": "tubb2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GPM4-1", "protein_name": "cAMP-dependent protein kinase", "gene_name": "prkacba", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QYM3", "url": "https://www.uniprot.org/uniprotkb/F1QYM3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32033529", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel Acetyl-CoA synthetase short-chain subfamily member 1 (Acss1) gene indicates a dynamic history of paralogue retention and loss in vertebrates.", "journal": "Gene", "date": "2012", "authors": "Castro LF, Lopes-Marques M, Wilson JM, Rocha E, Reis-Henriques MA, Santos MM, Cunha I", "reference": { "type": "PubMed", "id": "22313524", "url": "https://pubmed.ncbi.nlm.nih.gov/22313524" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QYS7-1", "protein_name": "Acetyl-coenzyme A synthetase", "gene_name": "acss1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QYS7", "url": "https://www.uniprot.org/uniprotkb/F1QYS7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22313524", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Evolution of Duplicated Genes of the Cpi-17/Phi-1 (ppp1r14) Family of Protein Phosphatase 1 Inhibitors in Teleosts.", "journal": "Int. J. Mol. Sci.", "date": "2020", "authors": "Lang Irene, Virk Guneet, Zheng Dale C, Young Jason, Nguyen Michael J, Amiri Rojin, Fong Michelle, Arata Alisa, Chadaideh Katia S, Walsh Susan, Weiser Douglas C", "reference": { "type": "PubMed", "id": "32784920", "url": "https://pubmed.ncbi.nlm.nih.gov/32784920" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QYZ6-1", "protein_name": "Pyruvate carboxylase", "gene_name": "pcxb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IKC3-1", "protein_name": "Interleukin", "gene_name": "il15l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9DDT5-1", "protein_name": "Transcription elongation factor SPT5", "gene_name": "supt5h", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QD66-1", "protein_name": "tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "trmt44", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58FYE5-1", "protein_name": "RWD domain-containing protein 4 isoform X1", "gene_name": "rwdd", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NLD2-1", "protein_name": "Uncharacterized protein LOC557813", "gene_name": "zgc:194930", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A935-1", "protein_name": "Seipin isoform 1", "gene_name": "bscl2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9V5-1", "protein_name": "4.6.1.19; 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J. Physiol. Cell Physiol.", "date": "2024", "authors": "Luo Y., Wang M., Wang J.X., Zhang Y.Y., Qiao F., Chen L.Q., Zhang M.L., Qian Y.C., Du Z.Y., Qian Y.F., Jin A.H.", "reference": { "type": "PubMed", "id": "39069827", "url": "https://pubmed.ncbi.nlm.nih.gov/39069827" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QYZ6-1", "protein_name": "Pyruvate carboxylase", "gene_name": "pcxb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ID68-1", "protein_name": "ATP-dependent 6-phosphofructokinase", "gene_name": "pfklb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6YZ52-1", "protein_name": "acetyl-CoA carboxylase", "gene_name": "acaca", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IFJ4-1", "protein_name": "Pyruvate carboxylase", "gene_name": "pcxa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QCP4-1", "protein_name": "Lysosome-associated membrane glycoprotein 1b precursor", "gene_name": "lamp1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QFA6-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "cox8a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DGK2-1", "protein_name": "L-lactate dehydrogenase B-B chain", "gene_name": "ldhbb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N9G1-1", "protein_name": "carnitine O-palmitoyltransferase", "gene_name": "cpt1aa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NRP3-1", "protein_name": "Peroxisome proliferator-activated receptor alpha", "gene_name": "pparaa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QYZ6", "url": "https://www.uniprot.org/uniprotkb/F1QYZ6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39069827", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Compromised COPII vesicle trafficking leads to glycogenic hepatopathy.", "journal": "Dis. Model. Mech.", "date": "2024", "authors": "Yang Yuxi, Zhang Xue, Zhao Qingshun, Zhang Jingzi, Lou Xin", "reference": { "type": "PubMed", "id": "39139065", "url": "https://pubmed.ncbi.nlm.nih.gov/39139065" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QYZ6-1", "protein_name": "Pyruvate carboxylase", "gene_name": "pcxb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R892-1", "protein_name": "Synaptosomal-associated protein", "gene_name": "snap23.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B6X5-1", "protein_name": "Suppressor of cytokine signaling 7", "gene_name": "socs7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7SYD5-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "sec31a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A3KQK2-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "asns", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6YZ52-1", "protein_name": "acetyl-CoA carboxylase", "gene_name": "acaca", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PC92-1", "protein_name": "Sec1 family domain-containing protein 1", "gene_name": "scfd1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RH85-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-6 alpha", "gene_name": "atf6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QYZ6", "url": "https://www.uniprot.org/uniprotkb/F1QYZ6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39139065", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": 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Biol.", "date": "2019", "authors": "Bian Wan-Ping, Chen Yan-Ling, Luo Juan-Juan, Wang Chao, Xie Shao-Lin, Pei De-Sheng", "reference": { "type": "PubMed", "id": "30955321", "url": "https://pubmed.ncbi.nlm.nih.gov/30955321" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QZ60-1", "protein_name": "X-ray repair cross-complementing protein 6 isoform X2; X-ray repair cross-complementing protein 6", "gene_name": "xrcc6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QJL4-1", "protein_name": "DNA ligase", "gene_name": "lig3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IB13-1", "protein_name": "DNA repair protein Ku80", "gene_name": "xrcc5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QPT3-1", "protein_name": "Double-strand break repair protein", "gene_name": "mre11a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QZ60", "url": "https://www.uniprot.org/uniprotkb/F1QZ60" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30955321", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Highly Efficient CRISPR-Cas9-Based Methods for Generating Deletion Mutations and F0 Embryos that Lack Gene Function in Zebrafish.", "journal": "Dev. Cell", "date": "2019", "authors": "Hoshijima Kazuyuki, Jurynec Michael J, Klatt Shaw Dana, Jacobi Ashley M, Behlke Mark A, Grunwald David Jonah", "reference": { "type": "PubMed", "id": "31708433", "url": "https://pubmed.ncbi.nlm.nih.gov/31708433" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QZ60-1", "protein_name": "X-ray repair cross-complementing protein 6 isoform X2; X-ray repair cross-complementing protein 6", "gene_name": "xrcc6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QZ60", "url": "https://www.uniprot.org/uniprotkb/F1QZ60" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31708433", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The cytotoxicity and genotoxicity of single and combined fenthion and terbufos treatments in human liver cells and zebrafish embryos.", "journal": "Sci. Total Environ.", "date": "2021", "authors": "Wahyuni Eva Ari, Lin Heng-Dao, Lu Che-Wei, Kao Chih Ming, Chen Ssu-Ching", "reference": { "type": "PubMed", "id": "33221015", "url": "https://pubmed.ncbi.nlm.nih.gov/33221015" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QZ60-1", "protein_name": "X-ray repair cross-complementing protein 6 isoform X2; X-ray repair cross-complementing protein 6", "gene_name": "xrcc6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3Z0-1", "protein_name": "DNA repair protein XRCC2 isoform 1", "gene_name": "xrcc2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QZ60", "url": "https://www.uniprot.org/uniprotkb/F1QZ60" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33221015", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Chaga mushroom (Inonotus obliquus) polysaccharides exhibit genoprotective effects in UVB-exposed embryonic zebrafish (Danio rerio) through coordinated expression of DNA repair genes.", "journal": "Heliyon", "date": "2021", "authors": "Eid Jehane Ibrahim, Al-Tuwaijri Majdah Mohammad, Mohanty Swabhiman, Das Biswadeep", "reference": { "type": "PubMed", "id": "33598573", "url": "https://pubmed.ncbi.nlm.nih.gov/33598573" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QZ60-1", "protein_name": "X-ray repair cross-complementing protein 6 isoform X2; 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J. Mol. 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Rep.", "date": "2016", "authors": "Mandriani Barbara, Castellana Stefano, Rinaldi Carmela, Manzoni Marta, Venuto Santina, Rodriguez-Aznar Eva, Galceran Juan, Nieto M Angela, Borsani Giuseppe, Monti Eugenio, Mazza Tommaso, Merla Giuseppe, Micale Lucia", "reference": { "type": "PubMed", "id": "27581768", "url": "https://pubmed.ncbi.nlm.nih.gov/27581768" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QZR2-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pak4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B5X1-1", "protein_name": "Ubiquitin-associated protein 2-like isoform X1", "gene_name": "ubap2l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N9F1-1", "protein_name": "WW domain binding protein 1-like a", "gene_name": "wbp1la", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NHJ6-1", "protein_name": "Potassium channel subfamily K member 9", "gene_name": "kcnk9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A3KQL1-1", "protein_name": "N-terminal EF-hand calcium-binding protein 2", "gene_name": "necab2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B7L4-1", "protein_name": "E3 ubiquitin-protein ligase LNX isoform X1", "gene_name": "lnx1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QZR2", "url": "https://www.uniprot.org/uniprotkb/F1QZR2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27581768", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PAK4 methylation by the methyltransferase SETD6 attenuates cell adhesion.", "journal": "Sci. Rep.", "date": "2020", "authors": "Vershinin Zlata, Feldman Michal, Levy Dan", "reference": { "type": "PubMed", "id": "33051544", "url": "https://pubmed.ncbi.nlm.nih.gov/33051544" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QZR2-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pak4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P49023-1", "protein_name": "Paxillin", "gene_name": "PXN", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QZR2", "url": "https://www.uniprot.org/uniprotkb/F1QZR2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "phosphorylation": [ { "start_pos": 272, "end_pos": 272, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P49023", "url": "https://www.uniprot.org/uniprotkb/P49023" }, { "database": "PubMed", "id": "26598620", "url": "https://pubmed.ncbi.nlm.nih.gov/26598620" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "iPTMnet", "id": "P49023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49023" }, { "database": "PubMed", "id": "27068537", "url": "https://pubmed.ncbi.nlm.nih.gov/27068537" }, { "database": "PubMed", "id": "32139877", "url": "https://pubmed.ncbi.nlm.nih.gov/32139877" }, { "database": "PubMed", "id": "33051544", "url": "https://pubmed.ncbi.nlm.nih.gov/33051544" } ], "site_lbl": "Ser272", "uniprot_canonical_ac": "P49023-1" } ], "record_id": "pubmed.33051544", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The zebrafish genome encodes the largest vertebrate repertoire of functional aquaporins with dual paralogy and substrate specificities similar to mammals.", "journal": "BMC Evol. Biol.", "date": "2010", "authors": "Tingaud-Sequeira Ang\u00e8le, Calusinska Magdalena, Finn Roderick N, Chauvign\u00e9 Fran\u00e7ois, Lozano Juanjo, Cerd\u00e0 Joan", "reference": { "type": "PubMed", "id": "20149227", "url": "https://pubmed.ncbi.nlm.nih.gov/20149227" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QZV4-1", "protein_name": "Aquaporin-10b isoform X1", "gene_name": "aqp10b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IIL3-1", "protein_name": "Aquaporin", "gene_name": "aqp11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NFX9-1", "protein_name": "Aquaporin-8b", "gene_name": "aqp8b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QZV4", "url": "https://www.uniprot.org/uniprotkb/F1QZV4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20149227", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GATA-6 maintains BMP-4 and Nkx2 expression during cardiomyocyte precursor maturation.", "journal": "EMBO J.", "date": "2003", "authors": "Peterkin Tessa, Gibson Abigail, Patient Roger", "reference": { "type": "PubMed", "id": "12912923", "url": "https://pubmed.ncbi.nlm.nih.gov/12912923" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QZW1-1", "protein_name": "Myosin-7", "gene_name": "myh7", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QZW1", "url": 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Rep.", "date": "2024", "authors": "Gornati R., Ceci M., Sette C., Romano N., Bonvissuto D., Catalani E., Cervia D., Papetti F., Silvestri F.", "reference": { "type": "PubMed", "id": "39465301", "url": "https://pubmed.ncbi.nlm.nih.gov/39465301" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QZW1-1", "protein_name": "Myosin-7", "gene_name": "myh7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R8L8-1", "protein_name": "Natriuretic peptides B precursor", "gene_name": "nppb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QZW1", "url": "https://www.uniprot.org/uniprotkb/F1QZW1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39465301", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Spatiotemporal compartmentalization of key physiological processes during muscle precursor differentiation.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2010", "authors": "Ozbudak Ertugrul M, Tassy Olivier, Pourqui\u00e9 Olivier", "reference": { "type": "PubMed", "id": "20160088", "url": "https://pubmed.ncbi.nlm.nih.gov/20160088" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R166-1", "protein_name": "RNA helicase", "gene_name": "eif4a2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BKB0-1", "protein_name": "AT-rich interactive domain-containing protein 4B", "gene_name": "arid4b; tomm20a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B7W1-1", "protein_name": "Eukaryotic translation elongation factor 1 delta b (Guanine nucleotide exchange protein) isoform X1", "gene_name": "eef1db", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PD89-1", "protein_name": "Cell growth-regulating nucleolar protein", "gene_name": "lyar", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R166", "url": "https://www.uniprot.org/uniprotkb/F1R166" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20160088", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Patterns of alternative splicing in response to cold acclimation in fish.", "journal": "J. 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Proteomics", "date": "2013", "authors": "Konzer Anne, Ruhs Aaron, Braun Helene, Jungblut Benno, Braun Thomas, Kr\u00fcger Marcus", "reference": { "type": "PubMed", "id": "23412571", "url": "https://pubmed.ncbi.nlm.nih.gov/23412571" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R184-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "txndc5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUD3-1", "protein_name": "Recoverin 3", "gene_name": "rcvrn3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S6M3-1", "protein_name": "Crystallin, gamma M2d1", "gene_name": "crygm2d1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RI07-1", "protein_name": "Phosducin b", "gene_name": "pdcb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R184", "url": "https://www.uniprot.org/uniprotkb/F1R184" } ], "common_name": "Zebrafish", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Stress-immune responses and DNA protection function of thioredoxin domain containing 12 in zebrafish (Danio rerio).", "journal": "Fish Shellfish Immunol.", "date": "2019", "authors": "Kulatunga D C M, Dananjaya S H S, Nikapitiya Chamilani, Godahewa G I, Cho Jongki, Kim Cheol-Hee, Lee Jehee, De Zoysa Mahanama", "reference": { "type": "PubMed", "id": "30359749", "url": "https://pubmed.ncbi.nlm.nih.gov/30359749" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R184-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "txndc5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IPV5-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "p4hb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q6B4-1", "protein_name": "Thioredoxin-related transmembrane protein 1", "gene_name": "tmx1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R184", "url": "https://www.uniprot.org/uniprotkb/F1R184" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30359749", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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Steve U, Eilebrecht Sebastian, Baumann Lisa, Teigeler Matthias, Hollert Henner, Kalkhof Stefan, Eilebrecht Elke, Sch\u00e4fers Christoph", "reference": { "type": "PubMed", "id": "31726584", "url": "https://pubmed.ncbi.nlm.nih.gov/31726584" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R184-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "txndc5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PLH2-1", "protein_name": "Zona pellucida protein AX 1 precursor", "gene_name": "zpax1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R4N4-1", "protein_name": "Zona pellucida protein AX 4 precursor", "gene_name": "zpax4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TUN2-1", "protein_name": "Histone H3", "gene_name": "si:ch73-368j24.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QJE0-1", "protein_name": "Ubiquinol-cytochrome c reductase core protein 2a", "gene_name": "uqcrc2a", 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Dyn.", "date": "2005", "authors": "Shimoda Nobuyoshi, Yamakoshi Kimi, Miyake Akimitsu, Takeda Hiroyuki", "reference": { "type": "PubMed", "id": "15937923", "url": "https://pubmed.ncbi.nlm.nih.gov/15937923" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R1K5-1", "protein_name": "DNA (cytosine-5-)-methyltransferase", "gene_name": "dnmt3ab", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BEF6-1", "protein_name": "DNA (cytosine-5-)-methyltransferase", "gene_name": "dnmt3ba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6YUX4-1", "protein_name": "DNA (cytosine-5)-methyltransferase", "gene_name": "dnmt1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R1K5", "url": "https://www.uniprot.org/uniprotkb/F1R1K5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15937923", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of the dnmt3 genes in zebrafish development: similarity to Dnmt3a and Dnmt3b.", "journal": "Dev. Genes Evol.", "date": "2011", "authors": "Smith Tamara H L, Collins Terry Mark, McGowan Ross A", "reference": { "type": "PubMed", "id": "21258815", "url": "https://pubmed.ncbi.nlm.nih.gov/21258815" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R1K5-1", "protein_name": "DNA (cytosine-5-)-methyltransferase", "gene_name": "dnmt3ab", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BEF6-1", "protein_name": "DNA (cytosine-5-)-methyltransferase", "gene_name": "dnmt3ba", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R1K5", "url": "https://www.uniprot.org/uniprotkb/F1R1K5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21258815", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of the de novo DNA methyltransferases (dnmt3 - dnmt8) during zebrafish lens development.", "journal": "Dev. Dyn.", "date": "2014", "authors": "Seritrakul Pawat, Gross Jeffrey M", "reference": { "type": "PubMed", "id": "24123478", "url": "https://pubmed.ncbi.nlm.nih.gov/24123478" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R1K5-1", "protein_name": "DNA (cytosine-5-)-methyltransferase", "gene_name": "dnmt3ab", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R1K5", "url": "https://www.uniprot.org/uniprotkb/F1R1K5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24123478", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tributyltin causes generational neurodevelopmental toxicity and the protective effect of folic acid in zebrafish.", "journal": "J. 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Sci.", "date": "2024", "authors": "Zhang Y., He C., Zheng N., Tang C., Zuo Z., Cai H.", "reference": { "type": "PubMed", "id": "37980044", "url": "https://pubmed.ncbi.nlm.nih.gov/37980044" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R1K5-1", "protein_name": "DNA (cytosine-5-)-methyltransferase", "gene_name": "dnmt3ab", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BEF6-1", "protein_name": "DNA (cytosine-5-)-methyltransferase", "gene_name": "dnmt3ba", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R1K5", "url": "https://www.uniprot.org/uniprotkb/F1R1K5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37980044", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Antagonistic interactions safeguard mitotic propagation of genetic and epigenetic information in zebrafish.", "journal": "Commun. 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Genet.", "date": "2006", "authors": "Peeters Hilde, Voz Marianne L, Verschueren Kristin, De Cat Bart, Pendeville H\u00e9l\u00e8ne, Thienpont Bernard, Schellens Ann, Belmont John W, David Guido, Van De Ven Wim J M, Fryns Jean-Pierre, Gewillig Marc, Huylebroeck Danny, Peers Bernard, Devriendt Koen", "reference": { "type": "PubMed", "id": "17038485", "url": "https://pubmed.ncbi.nlm.nih.gov/17038485" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R1P4-1", "protein_name": "Sestrin-3", "gene_name": "sesn3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R1P4", "url": "https://www.uniprot.org/uniprotkb/F1R1P4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17038485", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Incomplete splicing, cell division defects, and hematopoietic blockage in dhx8 mutant zebrafish.", "journal": "Dev. Dyn.", "date": "2012", "authors": "English Milton A, Lei Lin, Blake Trevor, Wincovitch Stephen M, Sood Raman, Azuma Mizuki, Hickstein Dennis, Liu P Paul", "reference": { "type": "PubMed", "id": "22411201", "url": "https://pubmed.ncbi.nlm.nih.gov/22411201" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R1P4-1", "protein_name": "Sestrin-3", "gene_name": "sesn3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JQB7-1", "protein_name": "Lupus La protein isoform X1", "gene_name": "ssb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P4I3-1", "protein_name": "Wiskott-Aldrich syndrome protein family member", "gene_name": "wasf2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R1P4", "url": "https://www.uniprot.org/uniprotkb/F1R1P4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22411201", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptional changes and developmental abnormalities in a zebrafish model of myotonic dystrophy type 1.", "journal": "Dis. 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Mech.", "date": "2014", "authors": "Todd Peter K, Ackall Feras Y, Hur Junguk, Sharma Kush, Paulson Henry L, Dowling James J", "reference": { "type": "PubMed", "id": "24092878", "url": "https://pubmed.ncbi.nlm.nih.gov/24092878" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R1P4-1", "protein_name": "Sestrin-3", "gene_name": "sesn3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R1P4", "url": "https://www.uniprot.org/uniprotkb/F1R1P4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24092878", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Systems genetics identifies Sestrin 3 as a regulator of a proconvulsant gene network in human epileptic hippocampus.", "journal": "Nat. 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Sci. Technol.", "date": "2018", "authors": "Dasgupta Subham, Cheng Vanessa, Vliet Sara M F, Mitchell Constance A, Volz David C", "reference": { "type": "PubMed", "id": "30157643", "url": "https://pubmed.ncbi.nlm.nih.gov/30157643" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R1P4-1", "protein_name": "Sestrin-3", "gene_name": "sesn3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A4C9-1", "protein_name": "Cystatin C (Amyloid angiopathy and cerebral hemorrhage) precursor", "gene_name": "cst3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QEC8-1", "protein_name": "Myosin, heavy polypeptide 1.2, skeletal muscle isoform X1", "gene_name": "myhz1.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R1P4", "url": "https://www.uniprot.org/uniprotkb/F1R1P4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30157643", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The zebrafish homologue of Parkinson's disease ATP13A2 is essential for embryonic survival.", "journal": "Brain Res. 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Endocrinol.", "date": "2019", "authors": "Schmidt Johannes R, Geurtzen Karina, von Bergen Martin, Schubert Kristin, Knopf Franziska", "reference": { "type": "PubMed", "id": "31636606", "url": "https://pubmed.ncbi.nlm.nih.gov/31636606" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R1X4-1", "protein_name": "Endoplasmic reticulum transmembrane helix translocase", "gene_name": "atp13a1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R1X4", "url": "https://www.uniprot.org/uniprotkb/F1R1X4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31636606", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Lett.", "date": "2016", "authors": "Kim Eunmi, Jeong Inyoung, Kim Suhyun, Kim Hwan-Ki, Lee Dong-Won, Kim Boa, Seong Jae Young, Bae Young-Ki, Ryu Jae-Ho, Park Hae-Chul", "reference": { "type": "PubMed", "id": "27315774", "url": "https://pubmed.ncbi.nlm.nih.gov/27315774" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R332-1", "protein_name": "Galanin receptor 2a", "gene_name": "galr2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F7V7-1", "protein_name": "Galanin receptor 2b", "gene_name": "galr2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7EZ53-1", "protein_name": "Galanin peptides", "gene_name": "gal", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R332", "url": "https://www.uniprot.org/uniprotkb/F1R332" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27315774", 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Evol.", "date": "2005", "authors": "Diekmann Heike, Klinger Michael, Oertle Thomas, Heinz Dietmar, Pogoda Hans-Martin, Schwab Martin E, Stuermer Claudia A O", "reference": { "type": "PubMed", "id": "15858203", "url": "https://pubmed.ncbi.nlm.nih.gov/15858203" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R540-1", "protein_name": "Reticulon", "gene_name": "rtn1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R540", "url": "https://www.uniprot.org/uniprotkb/F1R540" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15858203", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Targeting neural circuitry in zebrafish using GAL4 enhancer trapping.", "journal": "Nat. Methods", "date": "2007", "authors": "Scott Ethan K, Mason Lindsay, Arrenberg Aristides B, Ziv Limor, Gosse Nathan J, Xiao Tong, Chi Neil C, Asakawa Kazuhide, Kawakami Koichi, Baier Herwig", "reference": { "type": "PubMed", "id": "17369834", "url": "https://pubmed.ncbi.nlm.nih.gov/17369834" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R540-1", "protein_name": "Reticulon", "gene_name": "rtn1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5J5-1", "protein_name": "Outer dense fiber protein 3-like protein 2a", "gene_name": "odf3l2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R540", "url": "https://www.uniprot.org/uniprotkb/F1R540" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17369834", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Biol.", "date": "2010", "authors": "van Eekelen Mark, Runtuwene Vincent, Overvoorde John, den Hertog Jeroen", "reference": { "type": "PubMed", "id": "20188722", "url": "https://pubmed.ncbi.nlm.nih.gov/20188722" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R7B3-1", "protein_name": "Cathepsin Lb precursor", "gene_name": "ctslb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QE38-1", "protein_name": "Receptor-type tyrosine-protein phosphatase alpha", "gene_name": "ptpra", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B5P8-1", "protein_name": "Receptor-type tyrosine-protein phosphatase", "gene_name": "ptpreb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R7B3", "url": "https://www.uniprot.org/uniprotkb/F1R7B3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": 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Biol.", "date": "1994", "authors": "Thisse C, Thisse B, Halpern M E, Postlethwait J H", "reference": { "type": "PubMed", "id": "8045345", "url": "https://pubmed.ncbi.nlm.nih.gov/8045345" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R7B3-1", "protein_name": "Cathepsin Lb precursor", "gene_name": "ctslb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R7B3", "url": "https://www.uniprot.org/uniprotkb/F1R7B3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.8045345", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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