[ { "title": "Hexabromocyclododecane-induced developmental toxicity and apoptosis in zebrafish embryos.", "journal": "Aquat. Toxicol.", "date": "2009", "authors": "Deng Jun, Yu Liqin, Liu Chunsheng, Yu Ke, Shi Xiongjie, Yeung Leo W Y, Lam Paul K S, Wu Rudolf S S, Zhou Bingsheng", "reference": { "type": "PubMed", "id": "19356805", "url": "https://pubmed.ncbi.nlm.nih.gov/19356805" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QSB1-1", "protein_name": "Caspase-9", "gene_name": "casp9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QSB1", "url": "https://www.uniprot.org/uniprotkb/F1QSB1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19356805", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Part D Genomics Proteomics", "date": "2010", "authors": "Holmes Roger S", "reference": { "type": "PubMed", "id": "20374941", "url": "https://pubmed.ncbi.nlm.nih.gov/20374941" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R0E7-1", "protein_name": "Acyltransferase", "gene_name": "mogat2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R0E7", "url": "https://www.uniprot.org/uniprotkb/F1R0E7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20374941", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interspecies protein-protein interaction network construction for characterization of host-pathogen interactions: a Candida albicans-zebrafish interaction study.", "journal": "BMC Syst. Biol.", "date": "2013", "authors": "Wang Yu-Chao, Lin Che, Chuang Ming-Ta, Hsieh Wen-Ping, Lan Chung-Yu, Chuang Yung-Jen, Chen Bor-Sen", "reference": { "type": "PubMed", "id": "23947337", "url": "https://pubmed.ncbi.nlm.nih.gov/23947337" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R0E7-1", "protein_name": "Acyltransferase", "gene_name": "mogat2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1RLY6-1", "protein_name": "Kynurenine 3-monooxygenase", "gene_name": "kmo", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B4X4-1", "protein_name": "pantothenate kinase", "gene_name": "pank1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R0E7", "url": "https://www.uniprot.org/uniprotkb/F1R0E7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23947337", "abstract": "", 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"Peroxisome proliferator-activated receptor gamma is essential for stress adaptation by maintaining lipid homeostasis in female fish.", "journal": "Biochim Biophys Acta Mol Cell Biol Lipids", "date": "2022", "authors": "Wang Xue, Ma Qiang, Chen Lingyun, Wu Hongxia, Chen Li-Qiao, Qiao Fang, Luo Yuan, Zhang Mei-Ling, Du Zhen-Yu", "reference": { "type": "PubMed", "id": "35427795", "url": "https://pubmed.ncbi.nlm.nih.gov/35427795" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R0E7-1", "protein_name": "Acyltransferase", "gene_name": "mogat2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R0E7", "url": "https://www.uniprot.org/uniprotkb/F1R0E7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35427795", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Comp. Immunol.", "date": "2011", "authors": "Quiniou Sylvie M A, Wilson Melanie, Boudinot Pierre", "reference": { "type": "PubMed", "id": "21168434", "url": "https://pubmed.ncbi.nlm.nih.gov/21168434" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QT45-1", "protein_name": "Pinin", "gene_name": "pnn", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7SXU7-1", "protein_name": "RNA helicase", "gene_name": "ddx39b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PQW1-1", "protein_name": "Probable ATP-dependent RNA helicase DDX20", "gene_name": "ddx20", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IZ84-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "smg6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUX7-1", "protein_name": "CLK4-associating serine/arginine rich protein", "gene_name": "clasrp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NB07-1", "protein_name": "Serine/threonine-protein kinase TOR", "gene_name": "mtor", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F1X7-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "srrm1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2AWA1-1", "protein_name": "RNA helicase", "gene_name": "ddx39aa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q511-1", "protein_name": "Apoptotic chromatin condensation inducer 1b", "gene_name": "acin1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QT45", "url": "https://www.uniprot.org/uniprotkb/F1QT45" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21168434", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dissection of the role of Pinin in the development of zebrafish posterior pharyngeal cartilages.", "journal": "Histochem. 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Natl. Acad. Sci. U.S.A.", "date": "2009", "authors": "Morley Rosalind H, Lachani Kim, Keefe Damian, Gilchrist Michael J, Flicek Paul, Smith James C, Wardle Fiona C", "reference": { "type": "PubMed", "id": "19225104", "url": "https://pubmed.ncbi.nlm.nih.gov/19225104" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QTC2-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3C", "gene_name": "ppp1r3ca", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6IQU6-1", "protein_name": "Ribosome production factor 1", "gene_name": "rpf1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QTC2", "url": "https://www.uniprot.org/uniprotkb/F1QTC2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19225104", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Embryonic temperature affects muscle fibre recruitment in adult zebrafish: genome-wide changes in gene and microRNA expression associated with the transition from hyperplastic to hypertrophic growth phenotypes.", "journal": "J. Exp. Biol.", "date": "2009", "authors": "Johnston Ian A, Lee Hung-Tai, Macqueen Daniel J, Paranthaman Karthikeyani, Kawashima Cintia, Anwar Attia, Kinghorn James R, Dalmay Tamas", "reference": { "type": "PubMed", "id": "19482995", "url": "https://pubmed.ncbi.nlm.nih.gov/19482995" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QTC2-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3C", "gene_name": "ppp1r3ca", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QPF7-1", "protein_name": "Cystathionine gamma-lyase", "gene_name": "cth", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IFJ7-1", "protein_name": "Creatine kinase S-type, mitochondrial", "gene_name": "ckmt2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z1X3-1", "protein_name": "Myozenin-1b isoform X1", "gene_name": "myoz1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RGL7-1", "protein_name": "N-lysine methyltransferase SMYD2-B", "gene_name": "smyd2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LXA7-1", "protein_name": "Asporin", "gene_name": "aspn", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QEC8-1", "protein_name": "Myosin, heavy polypeptide 1.2, skeletal muscle isoform X1", "gene_name": "myhz1.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TZX9-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "zgc:153151", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NB85-1", "protein_name": "2.7.10.1; 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Toxicol. Environ. Health Part A", "date": "2010", "authors": "Lyche Jan L, Nourizadeh-Lillabadi Rasoul, Almaas Camilla, Stavik Benedicte, Berg Vidar, Sk\u00e5re Janneche Utne, Alestr\u00f8m Peter, Ropstad Erik", "reference": { "type": "PubMed", "id": "20526952", "url": "https://pubmed.ncbi.nlm.nih.gov/20526952" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QTC2-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3C", "gene_name": "ppp1r3ca", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LWC2-1", "protein_name": "Transmembrane protein 106B", "gene_name": "tmem106bb; tmem106b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9DGE1-1", "protein_name": "Mitogen-activated protein kinase 14B", "gene_name": "mapk14b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PKY8-1", "protein_name": "Alpha-2-HS-glycoprotein 1 precursor", "gene_name": "ahsg1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N1TQ92-1", "protein_name": "Tyrosine aminotransferase", "gene_name": "tat", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QTC2", "url": "https://www.uniprot.org/uniprotkb/F1QTC2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20526952", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Natural mixtures of POPs affected body weight gain and induced transcription of genes involved in weight regulation and insulin signaling.", "journal": "Aquat. Toxicol.", "date": "2011", "authors": "Lyche Jan L, Nourizadeh-Lillabadi Rasoul, Karlsson Camilla, Stavik Benedicte, Berg Vidar, Sk\u00e5re Janneche Utne, Alestr\u00f8m Peter, Ropstad Erik", "reference": { "type": "PubMed", "id": "21356182", "url": "https://pubmed.ncbi.nlm.nih.gov/21356182" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QTC2-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3C", "gene_name": "ppp1r3ca", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LWC2-1", "protein_name": "Transmembrane protein 106B", "gene_name": "tmem106bb; tmem106b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9DGE1-1", "protein_name": "Mitogen-activated protein kinase 14B", "gene_name": "mapk14b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PKY8-1", "protein_name": "Alpha-2-HS-glycoprotein 1 precursor", "gene_name": "ahsg1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N1TQ92-1", "protein_name": "Tyrosine aminotransferase", "gene_name": "tat", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QTC2", "url": "https://www.uniprot.org/uniprotkb/F1QTC2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21356182", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Essential Role of Nr2f Nuclear Receptors in Patterning the Vertebrate Upper Jaw.", "journal": "Dev. Cell", "date": "2018", "authors": "Barske Lindsey, Rataud Pauline, Behizad Kasra, Del Rio Lisa, Cox Samuel G, Crump J Gage", "reference": { "type": "PubMed", "id": "29358039", "url": "https://pubmed.ncbi.nlm.nih.gov/29358039" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QTC2-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3C", "gene_name": "ppp1r3ca", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P7F8-1", "protein_name": "Endothelin-1 receptor", "gene_name": "ednrab", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QTC2", "url": "https://www.uniprot.org/uniprotkb/F1QTC2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29358039", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "F1QTC2-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3C", "gene_name": "ppp1r3ca", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R8L1-1", "protein_name": "Fibroblast growth factor binding protein 2a precursor", "gene_name": "fgfbp2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QTC2", "url": "https://www.uniprot.org/uniprotkb/F1QTC2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29551495", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of zebrafish (Danio rerio) muscle ankyrin repeat proteins reveals their conserved response to endurance exercise.", "journal": "PLoS ONE", "date": "2018", "authors": "Boskovic Srdjan, Mar\u00edn-Juez Rub\u00e9n, Jasnic Jovana, Reischauer Sven, El Sammak Hadil, Kojic Ana, Faulkner Georgine, Radojkovic Dragica, Stainier Didier Y R, Kojic Snezana", "reference": { "type": "PubMed", "id": "30252882", "url": "https://pubmed.ncbi.nlm.nih.gov/30252882" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QTC2-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3C", 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"uniprot_canonical_ac": "A0A8M1P5X8-1", "protein_name": "Interferon-induced protein with tetratricopeptide repeats 15", "gene_name": "ifit15", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QTC2", "url": "https://www.uniprot.org/uniprotkb/F1QTC2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30252882", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { 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Rep.", "date": "2016", "authors": "Hirosawa M, Hayakawa K, Yoneda C, Arai D, Shiota H, Suzuki T, Tanaka S, Dohmae N, Shiota K", "reference": { "type": "PubMed", "id": "27615797", "url": "https://pubmed.ncbi.nlm.nih.gov/27615797" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QTL1-1", "protein_name": "Histone H2A", "gene_name": "si:ch1073-159d7.11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58IZ20-1", "protein_name": "Histone H2A", "gene_name": "si:dkey-261m9.7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P56703-1", "protein_name": "Proto-oncogene Wnt-3", "gene_name": "WNT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "E7F5W3-1", "protein_name": "Histone H2A", "gene_name": "hist1h2a10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L7L0-1", 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"field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] } ] }, { "title": "Histone H2A cooperates with RIP2 to induce the expression of antibacterial genes and MHC related genes.", "journal": "Dev. Comp. Immunol.", "date": "2019", "authors": "Wu Xiao Man, Cao Lu, Nie Pin, Chang Ming Xian", "reference": { "type": "PubMed", "id": "31336107", "url": "https://pubmed.ncbi.nlm.nih.gov/31336107" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QTL1-1", "protein_name": "Histone H2A", "gene_name": "si:ch1073-159d7.11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IJX9-1", "protein_name": "Peptidoglycan recognition protein 6", "gene_name": "pglyrp6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NDI2-1", "protein_name": "Interleukin family protein", "gene_name": "il19l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58IZ20-1", "protein_name": "Histone H2A", "gene_name": "si:dkey-261m9.7", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QTL1", "url": "https://www.uniprot.org/uniprotkb/F1QTL1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31336107", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Wild-type but not mutant huntingtin modulates the transcriptional activity of liver X receptors.", "journal": "J. Med. Genet.", "date": "2009", "authors": "Futter M, Diekmann H, Schoenmakers E, Sadiq O, Chatterjee K, Rubinsztein D C", "reference": { "type": "PubMed", "id": "19451134", "url": "https://pubmed.ncbi.nlm.nih.gov/19451134" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QU76-1", "protein_name": "Cholesterol 7-alpha-monooxygenase", "gene_name": "cyp7a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A446-1", "protein_name": "P-type phospholipid transporter", "gene_name": "abca1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IVP0-1", "protein_name": "3.4.13.9; Oxysterols receptor LXR-alpha", "gene_name": "nr1h3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6YZ52-1", "protein_name": "acetyl-CoA carboxylase", "gene_name": "acaca", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QU76", "url": "https://www.uniprot.org/uniprotkb/F1QU76" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19451134", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Coffee polyphenols exert hypocholesterolemic effects in zebrafish fed a high-cholesterol diet.", "journal": "Nutr. Metab.", "date": "2013", "authors": "Meguro Shinichi, Hasumura Takahiro, Hase Tadashi", "reference": { "type": "PubMed", "id": "24220226", "url": "https://pubmed.ncbi.nlm.nih.gov/24220226" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QU76-1", "protein_name": "Cholesterol 7-alpha-monooxygenase", "gene_name": "cyp7a1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QU76", "url": "https://www.uniprot.org/uniprotkb/F1QU76" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24220226", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lxr-driven enterocyte lipid droplet formation delays transport of ingested lipids.", "journal": "J. Lipid Res.", "date": "2014", "authors": "Cruz-Garcia Lourdes, Schlegel Amnon", "reference": { "type": "PubMed", "id": "25030662", "url": "https://pubmed.ncbi.nlm.nih.gov/25030662" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QU76-1", "protein_name": "Cholesterol 7-alpha-monooxygenase", "gene_name": "cyp7a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RAK0-1", "protein_name": "Long-chain-fatty-acid--CoA ligase", "gene_name": "acsl5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IGG8-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "abcg8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TXZ5-1", "protein_name": "long-chain-fatty-acid--CoA ligase", "gene_name": "acsl3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IKF0-1", "protein_name": "Apolipoprotein A-Ib precursor", "gene_name": "apoa1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LVA8-1", "protein_name": "long-chain-fatty-acid--CoA ligase", "gene_name": "acsl3a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QU76", "url": "https://www.uniprot.org/uniprotkb/F1QU76" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25030662", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish ppp1r21 mutant as a model for the study of primary biliary cholangitis.", "journal": "J. Genet. Genomics", "date": "2023", "authors": "Wu Chaoying, Zhang Wenfeng, Luo Yiyu, Cheng Chaoqing, Wang Xinjuan, Jiang Yan, Li Shuang, Luo Lingfei, Yang Yun", "reference": { "type": "PubMed", "id": "37271428", "url": "https://pubmed.ncbi.nlm.nih.gov/37271428" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QU76-1", "protein_name": "Cholesterol 7-alpha-monooxygenase", "gene_name": "cyp7a1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QU76", "url": "https://www.uniprot.org/uniprotkb/F1QU76" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37271428", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Danggui Shaoyao San ameliorates the lipid metabolism via the PPAR signaling pathway in a Danio rerio (zebrafish) model of hyperlipidemia.", "journal": "Biomed. Pharmacother.", "date": "2023", "authors": "Li P., Wang Y., He P., Pan Y., He C., He J., Luo R., Cheng S., Song Z., Lin F., Hou M., Xia X.", "reference": { "type": "PubMed", "id": "37852100", "url": "https://pubmed.ncbi.nlm.nih.gov/37852100" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QU76-1", "protein_name": "Cholesterol 7-alpha-monooxygenase", "gene_name": "cyp7a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A446-1", "protein_name": "P-type phospholipid transporter", "gene_name": "abca1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QU76", "url": "https://www.uniprot.org/uniprotkb/F1QU76" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37852100", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hypolipidemic Effect of Rice Bran Oil Extract Tocotrienol in High-Fat Diet-Induced Hyperlipidemia Zebrafish (Danio Rerio) Induced by High-Fat Diet.", "journal": "Int. 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Sci.", "date": "2024", "authors": "Liu Naicheng, Zhang Peng, Xue Mingyang, Zhang Mengwei, Huang Zhenyu, Xu Chen, Meng Yan, Fan Yuding, Liu Wei, Zhang Feixiang, Chen Peng, Zhou Yong", "reference": { "type": "PubMed", "id": "38474201", "url": "https://pubmed.ncbi.nlm.nih.gov/38474201" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QU76-1", "protein_name": "Cholesterol 7-alpha-monooxygenase", "gene_name": "cyp7a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N9G1-1", "protein_name": "carnitine O-palmitoyltransferase", "gene_name": "cpt1aa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QU76", "url": "https://www.uniprot.org/uniprotkb/F1QU76" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38474201", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A high-cholesterol zebrafish diet promotes hypercholesterolemia and fasting-associated liver steatosis.", "journal": "J. Lipid Res.", "date": "2024", "authors": "Jin Y., Wen J., Anderson J.L., Farber S.A., Rawls J.F., Moll T., Hensley M.R., Shen M.C., Kozan D., Kozan H., Young E.D.", "reference": { "type": "PubMed", "id": "39218217", "url": "https://pubmed.ncbi.nlm.nih.gov/39218217" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QU76-1", "protein_name": "Cholesterol 7-alpha-monooxygenase", "gene_name": "cyp7a1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QU76", "url": "https://www.uniprot.org/uniprotkb/F1QU76" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39218217", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2015", "authors": "G\u00f3mez-Mar\u00edn Carlos, Tena Juan J, Acemel Rafael D, L\u00f3pez-Mayorga Macarena, Naranjo Silvia, de la Calle-Mustienes Elisa, Maeso Ignacio, Beccari Leonardo, Aneas Ivy, Vielmas Erika, Bovolenta Paola, Nobrega Marcelo A, Carvajal Jaime, G\u00f3mez-Skarmeta Jos\u00e9 Luis", "reference": { "type": "PubMed", "id": "26034287", "url": "https://pubmed.ncbi.nlm.nih.gov/26034287" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QU82-1", "protein_name": "mRNA decay activator protein ZFP36", "gene_name": "zfp36l2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N1TT16-1", "protein_name": "Leucine-rich PPR motif-containing protein, mitochondrial", "gene_name": "lrpprc", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JJX2-1", "protein_name": "Prolyl endopeptidase", "gene_name": "prepl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B2V6-1", "protein_name": "Leucine-rich 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tandem-repeated Zebrafish zp3 genes possess oocyte-specific promoters and are insensitive to estrogen induction.", "journal": "Biol. Reprod.", "date": "2006", "authors": "Liu Xingjun, Wang Hai, Gong Zhiyuan", "reference": { "type": "PubMed", "id": "16481590", "url": "https://pubmed.ncbi.nlm.nih.gov/16481590" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QUS3-1", "protein_name": "Zona pellucida sperm-binding protein 4", "gene_name": "zp2.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A286Y9R5-1", "protein_name": "Zona pellucida sperm-binding protein 3", "gene_name": "LOC100536860; zp3.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8E7Q2-1", "protein_name": "Zona pellucida sperm-binding protein 3", "gene_name": "zp3d.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TYP5-1", "protein_name": "Zona pellucida sperm-binding protein 3", "gene_name": "zp3a.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P8M5-1", "protein_name": "Zona pellucida sperm-binding protein 3", "gene_name": "zp3c", "tax_name": "Zebrafish" } ], "species": [ { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanical analysis of chorion softening in prehatching stages of zebrafish embryos.", "journal": "IEEE Trans Nanobioscience", "date": "2006", "authors": "Kim Deok-Ho, Hwang Chang Nam, Sun Yu, Lee Sang Ho, Kim Byungkyu, Nelson Bradley J", "reference": { "type": "PubMed", "id": "16805104", "url": "https://pubmed.ncbi.nlm.nih.gov/16805104" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QUS3-1", "protein_name": "Zona pellucida sperm-binding protein 4", "gene_name": "zp2.5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QUS3", "url": "https://www.uniprot.org/uniprotkb/F1QUS3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16805104", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Toxicol.", "date": "2010", "authors": "Liu Chunsheng, Deng Jun, Yu Liqin, Ramesh Mathan, Zhou Bingsheng", "reference": { "type": "PubMed", "id": "19879662", "url": "https://pubmed.ncbi.nlm.nih.gov/19879662" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QUS3-1", "protein_name": "Zona pellucida sperm-binding protein 4", "gene_name": "zp2.5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QUS3", "url": "https://www.uniprot.org/uniprotkb/F1QUS3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19879662", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gonad differentiation in zebrafish is regulated by the canonical Wnt signaling pathway.", "journal": "Biol. Reprod.", "date": "2014", "authors": "Sreenivasan Rajini, Jiang Junhui, Wang Xingang, B\u00e1rtfai Rich\u00e1rd, Kwan Hsiao Yuen, Christoffels Alan, Orb\u00e1n L\u00e1szl\u00f3", "reference": { "type": "PubMed", "id": "24174574", "url": "https://pubmed.ncbi.nlm.nih.gov/24174574" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QUS3-1", "protein_name": "Zona pellucida sperm-binding protein 4", "gene_name": "zp2.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IMZ7-1", "protein_name": "[histone H4]-lysine(20) N-methyltransferase", "gene_name": "kmt5ab", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0R174-1", "protein_name": "Retinol-binding protein 1.1", "gene_name": "rbp1.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FC96-1", "protein_name": "palmitoyl-CoA hydrolase", "gene_name": "bloc1s3; ppt2a.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R8L4-1", "protein_name": "Transcription factor IIIA", 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Saf.", "date": "2020", "authors": "Tu Xin, Li Ying-Wen, Chen Qi-Liang, Shen Yan-Jun, Liu Zhi-Hao", "reference": { "type": "PubMed", "id": "32888589", "url": "https://pubmed.ncbi.nlm.nih.gov/32888589" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QUY7-1", "protein_name": "Transporter", "gene_name": "slc6a1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QUY7", "url": "https://www.uniprot.org/uniprotkb/F1QUY7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32888589", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phenotypic analysis of catastrophic childhood epilepsy genes.", "journal": "Commun. 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Mol. Neurosci.", "date": "2024", "authors": "Kwong R.W.M., Naderi M., Nguyen T.M.N., Pompili C.", "reference": { "type": "PubMed", "id": "39469188", "url": "https://pubmed.ncbi.nlm.nih.gov/39469188" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QUY7-1", "protein_name": "Transporter", "gene_name": "slc6a1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R9E8-1", "protein_name": "Glutamate decarboxylase 2", "gene_name": "gad2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QUY7", "url": "https://www.uniprot.org/uniprotkb/F1QUY7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39469188", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Delta-sarcoglycan is necessary for early heart and muscle development in zebrafish.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2006", "authors": "Cheng Lu, Guo Xiao-fang, Yang Xue-yan, Chong Mei, Cheng Jing, Li Ge, Gui Yong-hao, Lu Da-ru", "reference": { "type": "PubMed", "id": "16650823", "url": "https://pubmed.ncbi.nlm.nih.gov/16650823" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QVW0-1", "protein_name": "Natriuretic peptides A precursor", "gene_name": "nppa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AU43-1", "protein_name": "Delta-sarcoglycan isoform X4", "gene_name": "sgcd", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q504-1", "protein_name": "Gamma-sarcoglycan", "gene_name": "sgcg", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QVW0", "url": "https://www.uniprot.org/uniprotkb/F1QVW0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16650823", "abstract": 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Georgia, Dahme Tillman, Just Steffen, Trano Nicole, Katus Hugo A, Fishman Mark C, Rottbauer Wolfgang", "reference": { "type": "PubMed", "id": "16921028", "url": "https://pubmed.ncbi.nlm.nih.gov/16921028" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QVW0-1", "protein_name": "Natriuretic peptides A precursor", "gene_name": "nppa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QVW0", "url": "https://www.uniprot.org/uniprotkb/F1QVW0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16921028", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional modulation of cardiac form through regionally confined cell shape changes.", "journal": "PLoS Biol.", "date": "2007", "authors": "Auman Heidi J, Coleman Hope, Riley Heather E, Olale Felix, Tsai Huai-Jen, Yelon Deborah", "reference": { "type": "PubMed", "id": "17311471", "url": "https://pubmed.ncbi.nlm.nih.gov/17311471" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QVW0-1", "protein_name": "Natriuretic peptides A precursor", "gene_name": "nppa", "tax_name": "Zebrafish" } ], "species": [ { "name": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Tbx2 and Tbx3 regulate the dynamics of cell proliferation during heart remodeling.", "journal": "PLoS ONE", "date": "2007", "authors": "Ribeiro In\u00eas, Kawakami Yasuhiko, B\u00fcscher Dirk, Raya Angel, Rodr\u00edguez-Le\u00f3n Joaqu\u00edn, Morita Masanobu, Rodr\u00edguez Esteban Concepci\u00f3n, Izpis\u00faa Belmonte Juan Carlos", "reference": { "type": "PubMed", "id": "17460765", "url": "https://pubmed.ncbi.nlm.nih.gov/17460765" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QVW0-1", "protein_name": "Natriuretic peptides A precursor", "gene_name": "nppa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JKS6-1", "protein_name": "T-box transcription factor TBX3a", "gene_name": "tbx3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BCU2-1", "protein_name": "T-box transcription factor TBX2a isoform X1", "gene_name": "tbx2a", "tax_name": "Zebrafish" } ], "species": [ { "name": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Unexpected Roles for Ciliary Kinesins and Intraflagellar Transport Proteins.", "journal": "Genetics", "date": "2016", "authors": "Pooranachandran Niedharsan, Malicki Jarema J", "reference": { "type": "PubMed", "id": "27038111", "url": "https://pubmed.ncbi.nlm.nih.gov/27038111" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QW58-1", "protein_name": "Kinesin-like protein", "gene_name": "kif3cb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QW58", "url": "https://www.uniprot.org/uniprotkb/F1QW58" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27038111", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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Biol. Chem.", "date": "2017", "authors": "Feng Dong, Chen Zhe, Yang Kuang, Miao Shanshan, Xu Bolin, Kang Yunsi, Xie Haibo, Zhao Chengtian", "reference": { "type": "PubMed", "id": "28855254", "url": "https://pubmed.ncbi.nlm.nih.gov/28855254" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QW58-1", "protein_name": "Kinesin-like protein", "gene_name": "kif3cb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QN54-1", "protein_name": "Kinesin-like protein KIF3B", "gene_name": "kif3b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QW58", "url": "https://www.uniprot.org/uniprotkb/F1QW58" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28855254", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The DC-SIGN of zebrafish: insights into the existence of a CD209 homologue in a lower vertebrate and its involvement in adaptive immunity.", "journal": "J. 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Immunol.", "date": "2015", "authors": "Shu Chang, Wang Shanchen, Xu Tianjun", "reference": { "type": "PubMed", "id": "25596146", "url": "https://pubmed.ncbi.nlm.nih.gov/25596146" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QW96-1", "protein_name": "CD209 antigen", "gene_name": "cd209", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QW96", "url": "https://www.uniprot.org/uniprotkb/F1QW96" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25596146", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Studies Into beta-Glucan Recognition in Fish Suggests a Key Role for the C-Type Lectin Pathway.", "journal": "Front. 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Mater. 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Dyn.", "date": "2001", "authors": "Dickmeis T, Aanstad P, Clark M, Fischer N, Herwig R, Mourrain P, Blader P, Rosa F, Lehrach H, Str\u00e4hle U", "reference": { "type": "PubMed", "id": "11748827", "url": "https://pubmed.ncbi.nlm.nih.gov/11748827" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWB4-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "hnrnpk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QXF4-1", "protein_name": "THO complex subunit 2", "gene_name": "thoc2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QXZ9-1", "protein_name": "Mothers against decapentaplegic homolog", "gene_name": "smad9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S754-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "snrnp200", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FDV9-1", "protein_name": "Cysteine--tRNA ligase, cytoplasmic", "gene_name": "cars1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T7Y2-1", "protein_name": "Transcription initiation factor IIF subunit alpha", "gene_name": "gtf2f1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PEX4-1", "protein_name": "Splicing factor, proline- and glutamine-rich", "gene_name": "sfpq", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N4Z7-1", "protein_name": "Cystathionine beta-synthase", "gene_name": "cbsb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RHQ7-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "hnrnpub", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6M0-1", "protein_name": "Max-like protein X", "gene_name": "mlx", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DRL5-1", "protein_name": "Myb-binding protein 1A-like protein", "gene_name": "mybbp1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QWB4", "url": "https://www.uniprot.org/uniprotkb/F1QWB4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11748827", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A Genetic Model to Study Increased Hexosamine Biosynthetic Flux.", "journal": "Endocrinology", "date": "2017", "authors": "Hugo Sarah E, Schlegel Amnon", "reference": { "type": "PubMed", "id": "28582574", "url": "https://pubmed.ncbi.nlm.nih.gov/28582574" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWB4-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "hnrnpk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G007-1", "protein_name": "Haptoglobin isoform X1", "gene_name": "hp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G6J7-1", "protein_name": "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial", "gene_name": "nfu1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3P4-1", "protein_name": "Tyrosine-protein kinase receptor", "gene_name": "ntrk2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QWB4", "url": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Deconvoluting Wavelengths Leading to Fluorescent Light Induced Inflammation and Cellular Stress in Zebrafish (Danio rerio).", "journal": "Sci. Rep.", "date": "2020", "authors": "Boswell Mikki, Boswell William, Lu Yuan, Savage Markita, Walter Ronald B", "reference": { "type": "PubMed", "id": "32094353", "url": "https://pubmed.ncbi.nlm.nih.gov/32094353" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWB4-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "hnrnpk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PWA7-1", "protein_name": "Complement component C7", "gene_name": "c7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BHA7-1", "protein_name": "Complement C1q tumor necrosis factor-related protein 4", "gene_name": "c1qtnf13", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z906-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "itih3b.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FG90-1", "protein_name": "Alpha-1A adrenergic receptor", "gene_name": "adra1aa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q5L6-1", "protein_name": "RNA helicase", "gene_name": "ddx5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AV89-1", "protein_name": "DNA excision repair protein ERCC-6-like 2 isoform X1", "gene_name": "ercc6l2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "R4GDZ5-1", "protein_name": "Myosin, heavy chain 7B, cardiac muscle, beta a", "gene_name": "myh7ba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3K7-1", "protein_name": "Complement C4-B", "gene_name": "c4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TB58-1", "protein_name": "Ribosomal protein S6 kinase", "gene_name": "rps6ka1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T7Y2-1", "protein_name": "Transcription initiation factor IIF subunit alpha", "gene_name": "gtf2f1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N882-1", "protein_name": "Alpha-actinin-2b", "gene_name": "actn2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3LSS0-1", "protein_name": "CWF19-like protein 2", "gene_name": "cwf19l2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HH61-1", "protein_name": "Apolipoprotein A-IV b, tandem duplicate 2 isoform X1", "gene_name": "apoa4b.2; 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Biol. Evol.", "date": "2021", "authors": "Desvignes Thomas, Sydes Jason, Montfort Jer\u00f4me, Bobe Julien, Postlethwait John H", "reference": { "type": "PubMed", "id": "33871629", "url": "https://pubmed.ncbi.nlm.nih.gov/33871629" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWB4-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "hnrnpk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NRK2-1", "protein_name": "NADPH oxidase organizer 1b", "gene_name": "noxo1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A984-1", "protein_name": "Zinc finger protein ZFAT", "gene_name": "zfat", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NBY7-1", "protein_name": "Eukaryotic translation initiation factor 2-alpha kinase 1", "gene_name": "eif2ak1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JIA3-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "hnrpkl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7EZL0-1", "protein_name": "Serine/threonine-protein kinase LMTK2", "gene_name": "lmtk2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F8H3-1", "protein_name": "Forkhead box L3", "gene_name": "foxl3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NHJ6-1", "protein_name": "Potassium channel subfamily K member 9", "gene_name": "kcnk9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ITC5-1", "protein_name": "Transformation/transcription domain-associated protein", "gene_name": "trrap", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "R4GEE3-1", "protein_name": "TOM1-like protein 2", "gene_name": "tom1l2b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QWB4", "url": "https://www.uniprot.org/uniprotkb/F1QWB4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33871629", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish atonal homologue zath3 is expressed during neurogenesis in embryonic development.", "journal": "Dev. Dyn.", "date": "2003", "authors": "Wang Xukun, Emelyanov Alexander, Korzh Vladimir, Gong Zhiyuan", "reference": { "type": "PubMed", "id": "12889068", "url": "https://pubmed.ncbi.nlm.nih.gov/12889068" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWM8-1", "protein_name": "Neurogenic differentiation factor", "gene_name": "neurod4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QWM8", "url": "https://www.uniprot.org/uniprotkb/F1QWM8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12889068", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zath3, a neural basic helix-loop-helix gene, regulates early neurogenesis in the zebrafish.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2003", "authors": "Park Su-Hyeon, Yeo Sang-Yeob, Yoo Kyeong-Won, Hong Sung-Kook, Lee Suman, Rhee Myungchull, Chitnis Ajay B, Kim Cheol-Hee", "reference": { "type": "PubMed", "id": "12890499", "url": "https://pubmed.ncbi.nlm.nih.gov/12890499" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWM8-1", "protein_name": "Neurogenic differentiation factor", "gene_name": "neurod4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QWM8", "url": "https://www.uniprot.org/uniprotkb/F1QWM8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12890499", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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actively transcribed embryonic genes.", "journal": "Genome Biol.", "date": "2006", "authors": "Wardle Fiona C, Odom Duncan T, Bell George W, Yuan Bingbing, Danford Timothy W, Wiellette Elizabeth L, Herbolsheimer Elizabeth, Sive Hazel L, Young Richard A, Smith James C", "reference": { "type": "PubMed", "id": "16889661", "url": "https://pubmed.ncbi.nlm.nih.gov/16889661" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWM8-1", "protein_name": "Neurogenic differentiation factor", "gene_name": "neurod4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LW01-1", "protein_name": "Hatching enzyme 1.2", "gene_name": "he1.1; he1.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N1Z3C4-1", "protein_name": "Hsp70-binding protein 1", "gene_name": "hspbp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BFD8-1", "protein_name": "3.1.26.4; Thy-1 membrane glycoprotein precursor", "gene_name": "thy1", "tax_name": "Zebrafish" } ], "species": 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Biol.", "date": "2022", "authors": "Hehr Carrie Lynn, Halabi Rami, McFarlane Sarah", "reference": { "type": "PubMed", "id": "36058267", "url": "https://pubmed.ncbi.nlm.nih.gov/36058267" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWM8-1", "protein_name": "Neurogenic differentiation factor", "gene_name": "neurod4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PF69-1", "protein_name": "Iroquois-class homeodomain protein IRX-1a isoform 1", "gene_name": "irx1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2CE80-1", "protein_name": "Forkhead box protein D1", "gene_name": "foxd1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QWM8", "url": "https://www.uniprot.org/uniprotkb/F1QWM8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36058267", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A heterozygous mutation in UBE2H in a patient with developmental delay leads to an aberrant brain development in zebrafish.", "journal": "Hum. Genomics", "date": "2023", "authors": "Shin Unbeom, Choi Yeonsong, Ko Hwa Soo, Myung Kyungjae, Lee Semin, Cheon Chong Kun, Lee Yoonsung", "reference": { "type": "PubMed", "id": "37208785", "url": "https://pubmed.ncbi.nlm.nih.gov/37208785" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWM8-1", "protein_name": "Neurogenic differentiation factor", "gene_name": "neurod4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QWM8", "url": "https://www.uniprot.org/uniprotkb/F1QWM8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37208785", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Spinal cord repair is modulated by the neurogenic factor Hb-egf under direction of a regeneration-associated enhancer.", "journal": "Nat. Commun.", "date": "2023", "authors": "Cigliola Valentina, Shoffner Adam, Lee Nutishia, Ou Jianhong, Gonzalez Trevor J, Hoque Jiaul, Becker Clayton J, Han Yanchao, Shen Grace, Faw Timothy D, Abd-El-Barr Muhammad M, Varghese Shyni, Asokan Aravind, Poss Kenneth D", "reference": { "type": "PubMed", "id": "37567873", "url": "https://pubmed.ncbi.nlm.nih.gov/37567873" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWM8-1", "protein_name": "Neurogenic differentiation factor", "gene_name": "neurod4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q99075-1", "protein_name": "Proheparin-binding EGF-like growth factor", "gene_name": "HBEGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A8M2B880-1", "protein_name": "Proheparin-binding EGF-like growth factor", "gene_name": "hbegfb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QWM8", "url": 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regimes in the developing hindbrain.", "journal": "Development", "date": "2023", "authors": "Leino Sami A, Constable Sean C J, Streit Andrea, Wilkinson David G", "reference": { "type": "PubMed", "id": "37642135", "url": "https://pubmed.ncbi.nlm.nih.gov/37642135" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWM8-1", "protein_name": "Neurogenic differentiation factor", "gene_name": "neurod4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8QC01-1", "protein_name": "ETS translocation variant 5b isoform 1", "gene_name": "etv5b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q802Y8-1", "protein_name": "Zinc finger and BTB domain-containing protein 16-A", "gene_name": "zbtb16a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QTJ6-1", "protein_name": "Homeobox protein HMX2", "gene_name": "hmx2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": 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photoreceptor regeneration in the zebrafish retina.", "journal": "PLoS Genet.", "date": "2023", "authors": "Veen Kellie, Krylov Aaron, Yu Shuguang, He Jie, Boyd Patrick, Hyde David R, Mantamadiotis Theo, Cheng Louise Y, Jusuf Patricia R", "reference": { "type": "PubMed", "id": "37930995", "url": "https://pubmed.ncbi.nlm.nih.gov/37930995" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWM8-1", "protein_name": "Neurogenic differentiation factor", "gene_name": "neurod4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QWM8", "url": "https://www.uniprot.org/uniprotkb/F1QWM8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37930995", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"Single-Cell Analysis of Rohon-Beard Neurons Implicates Fgf Signaling in Axon Maintenance and Cell Survival.", "journal": "J. Neurosci.", "date": "2024", "authors": "Tuttle Adam M, Miller Lauren N, Royer Lindsey J, Wen Hua, Kelly Jimmy J, Calistri Nicholas L, Heiser Laura M, Nechiporuk Alex V", "reference": { "type": "PubMed", "id": "38423763", "url": "https://pubmed.ncbi.nlm.nih.gov/38423763" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWQ9-1", "protein_name": "PR domain zinc finger protein 14 isoform X1", "gene_name": "prdm14", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A5K6-1", "protein_name": "Mast/stem cell growth factor receptor", "gene_name": "kitb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S6S7-1", "protein_name": "ETS translocation variant 5a isoform 1; ETS translocation variant 5a isoform X1", "gene_name": "etv5a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9PUQ1-1", "protein_name": "ETS translocation variant 4", "gene_name": "etv4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9DE29-1", "protein_name": "Adenylate cyclase activating polypeptide 1a isoform 1 precursor", "gene_name": "adcyap1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QWQ9", "url": "https://www.uniprot.org/uniprotkb/F1QWQ9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38423763", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]