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C, Lee YA, Tavendale R, Mukhopadhyay S, Turner SW, Madhok VB, Sullivan FM, Relton C, Burn J, Meggitt S, Smith CH, Allen MA, Barker JN, Reynolds NJ, Cordell HJ, Irvine AD, McLean WH, Sandilands A, Fallon PG", "reference": { "type": "PubMed", "id": "24084074", "url": "https://pubmed.ncbi.nlm.nih.gov/24084074" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BSE2-1", "protein_name": "Transmembrane protein 79", "gene_name": "TMEM79", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9D709-1", "protein_name": "Transmembrane protein 79", "gene_name": "Tmem79", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BSE2", "url": "https://www.uniprot.org/uniprotkb/Q9BSE2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24084074", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": 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occurrence and metastasis of intrahepatic cholangiocarcinoma through MAPK signaling pathway.", "journal": "Acta biochimica et biophysica Sinica", "date": "2024-02-01", "authors": "Zhang Huhu, Yang Jiahua, Song Qinghang, Ding Xiaoyan, Sun Fulin, Yang Lina", "reference": { "type": "PubMed", "id": "38298057", "url": "https://pubmed.ncbi.nlm.nih.gov/38298057" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8TBC4-1", "protein_name": "NEDD8-activating enzyme E1 catalytic subunit", "gene_name": "UBA3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8TBC4", "url": "https://www.uniprot.org/uniprotkb/Q8TBC4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38298057", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"ZNF232: structure and expression analysis of a novel human C(2)H(2) zinc finger gene, member of the SCAN/LeR domain subfamily.", "journal": "Biochim. Biophys. Acta", "date": "2001", "authors": "Mavrogiannis LA, Argyrokastritis A, Tzitzikas N, Dermitzakis E, Sarafidou T, Patsalis PC, Moschonas NK", "reference": { "type": "PubMed", "id": "11311944", "url": "https://pubmed.ncbi.nlm.nih.gov/11311944" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UNY5-1", "protein_name": "Zinc finger protein 232", "gene_name": "ZNF232", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UNY5", "url": "https://www.uniprot.org/uniprotkb/Q9UNY5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11311944", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "C14orf93 (RTFC) is identified as a novel susceptibility gene for familial nonmedullary thyroid cancer.", "journal": "Biochemical and biophysical research communications", "date": "2017", "authors": "Liu C, Yu Y, Yin G, Zhang J, Wen W, Ruan X, Li D, Zhang S, Cai W, Gao M, Chen L", "reference": { "type": "PubMed", "id": "27864143", "url": "https://pubmed.ncbi.nlm.nih.gov/27864143" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H972-1", "protein_name": "Uncharacterized 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Retriever is a multiprotein complex for retromer-independent endosomal cargo recycling.", "journal": "Nature cell biology", "date": "2017", "authors": "McNally KE, Faulkner R, Steinberg F, Gallon M, Ghai R, Pim D, Langton P, Pearson N, Danson CM, Nagele H, Morris LL, Singla A, Overlee BL, Heesom KJ, Sessions R, Banks L, Collins BM, Berger I, Billadeau DD, Burstein E, Cullen PJ", "reference": { "type": "PubMed", "id": "28892079", "url": "https://pubmed.ncbi.nlm.nih.gov/28892079" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7Z3J2-1", "protein_name": "VPS35 endosomal protein-sorting factor-like", "gene_name": "VPS35L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QK1-1", "protein_name": "Vacuolar protein sorting-associated protein 35", "gene_name": "VPS35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14972-1", "protein_name": "Vacuolar protein sorting-associated protein 26C", "gene_name": "VPS26C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N668-1", "protein_name": "COMM domain-containing protein 1", "gene_name": "COMMD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86X83-1", "protein_name": "COMM domain-containing protein 2", "gene_name": "COMMD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P000-1", "protein_name": "COMM domain-containing protein 9", "gene_name": "COMMD9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX08-1", "protein_name": "COMM domain-containing protein 8", "gene_name": "COMMD8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N9S9-1", "protein_name": "Sorting nexin-31", "gene_name": "SNX31", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60826-1", "protein_name": "Coiled-coil domain-containing protein 22", "gene_name": "CCDC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15036-1", "protein_name": "Sorting nexin-17", 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[9606]" } ], "mutagenesis": [ { "start_pos": 440, "end_pos": 440, "sequence_org": "L", "sequence_mut": "G", "comment": "Strongly decreases interaction with CCDC22, CCDC93, VPS26C and VPS35L.", "evidence": [ { "database": "UniProtKB", "id": "Q8N9S9", "url": "https://www.uniprot.org/uniprotkb/Q8N9S9" }, { "database": "PubMed", "id": "28892079", "url": "https://pubmed.ncbi.nlm.nih.gov/28892079" } ], "uniprot_canonical_ac": "Q8N9S9-1" }, { "start_pos": 432, "end_pos": 432, "sequence_org": "L", "sequence_mut": "A", "comment": "No effect on interaction with CCDC22, CCDC93, VPS26C and VPS35L.", "evidence": [ { "database": "UniProtKB", "id": "Q15036", "url": "https://www.uniprot.org/uniprotkb/Q15036" }, { "database": "PubMed", "id": "28892079", "url": "https://pubmed.ncbi.nlm.nih.gov/28892079" } ], "uniprot_canonical_ac": "Q15036-1" }, { "start_pos": 433, "end_pos": 433, "sequence_org": "S", "sequence_mut": "D", "comment": "No effect on interaction with CCDC22, CCDC93, VPS26C and VPS35L.", "evidence": [ { "database": "UniProtKB", "id": "Q15036", "url": "https://www.uniprot.org/uniprotkb/Q15036" }, { "database": "PubMed", "id": "28892079", "url": "https://pubmed.ncbi.nlm.nih.gov/28892079" } ], "uniprot_canonical_ac": "Q15036-1" }, { "start_pos": 440, "end_pos": 440, "sequence_org": "S", "sequence_mut": "D", "comment": "No effect on interaction with CCDC22, CCDC93, VPS26C and VPS35L.", "evidence": [ { "database": "UniProtKB", "id": "Q15036", "url": "https://www.uniprot.org/uniprotkb/Q15036" }, { "database": "PubMed", "id": "28892079", "url": "https://pubmed.ncbi.nlm.nih.gov/28892079" } ], "uniprot_canonical_ac": "Q15036-1" }, { "start_pos": 464, "end_pos": 464, "sequence_org": "G", "sequence_mut": "V", "comment": "Slightly decreases interaction with CCDC22, CCDC93, VPS26C and VPS35L.", "evidence": [ { "database": "UniProtKB", "id": "Q15036", "url": "https://www.uniprot.org/uniprotkb/Q15036" }, { "database": "PubMed", "id": "28892079", "url": 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No effect on endosomal location.", "evidence": [ { "database": "UniProtKB", "id": "Q15036", "url": "https://www.uniprot.org/uniprotkb/Q15036" }, { "database": "PubMed", "id": "28892079", "url": "https://pubmed.ncbi.nlm.nih.gov/28892079" } ], "uniprot_canonical_ac": "Q15036-1" }, { "start_pos": 469, "end_pos": 469, "sequence_org": "D", "sequence_mut": "K", "comment": "Slightly decreases interaction with CCDC22, CCDC93, VPS26C and VPS35L.", "evidence": [ { "database": "UniProtKB", "id": "Q15036", "url": "https://www.uniprot.org/uniprotkb/Q15036" }, { "database": "PubMed", "id": "28892079", "url": "https://pubmed.ncbi.nlm.nih.gov/28892079" } ], "uniprot_canonical_ac": "Q15036-1" }, { "start_pos": 470, "end_pos": 470, "sequence_org": "L", "sequence_mut": "G", "comment": "Strongly decreases interaction with CCDC22, CCDC93, VPS26C and VPS35L. No effect on endosomal location.", "evidence": [ { "database": "UniProtKB", "id": "Q15036", "url": "https://www.uniprot.org/uniprotkb/Q15036" }, { "database": "PubMed", "id": "28892079", "url": "https://pubmed.ncbi.nlm.nih.gov/28892079" } ], "uniprot_canonical_ac": "Q15036-1" } ], "record_id": "pubmed.28892079", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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Sci.", "date": "2003", "authors": "Warder DE, Keherly MJ", "reference": { "type": "PubMed", "id": "12824700", "url": "https://pubmed.ncbi.nlm.nih.gov/12824700" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ULV3-1", "protein_name": "Cip1-interacting zinc finger protein", "gene_name": "CIZ1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9ULV3", "url": "https://www.uniprot.org/uniprotkb/Q9ULV3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12824700", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": 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"title": "The inhibitory helix controls the intramolecular conformational switching of the C-terminus of STIM1.", "journal": "PloS one", "date": "2013", "authors": "Cui Boyang, Yang Xue, Li Siwei, Lin Zhijie, Wang Zheng, Dong Cheng, Shen Yuequan", "reference": { "type": "PubMed", "id": "24069340", "url": "https://pubmed.ncbi.nlm.nih.gov/24069340" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13586-1", "protein_name": "Stromal interaction molecule 1", "gene_name": "STIM1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13586", "url": "https://www.uniprot.org/uniprotkb/Q13586" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24069340", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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[] } ] }, { "title": "GOK: a gene at 11p15 involved in rhabdomyosarcoma and rhabdoid tumor development.", "journal": "Cancer Res.", "date": "1997", "authors": "Sabbioni S, Barbanti-Brodano G, Croce C M, Negrini M", "reference": { "type": "PubMed", "id": "9377559", "url": "https://pubmed.ncbi.nlm.nih.gov/9377559" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13586-1", "protein_name": "Stromal interaction molecule 1", "gene_name": "STIM1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13586", "url": "https://www.uniprot.org/uniprotkb/Q13586" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9377559", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The new collagen gene COL27A1 contains SOX9-responsive enhancer elements.", "journal": "Matrix biology : journal of the International Society for Matrix Biology", "date": "2005", "authors": "Jenkins E, Moss JB, Pace JM, Bridgewater LC", "reference": { "type": "PubMed", "id": "15922909", "url": "https://pubmed.ncbi.nlm.nih.gov/15922909" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8IZC6", "url": "https://www.uniprot.org/uniprotkb/Q8IZC6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15922909", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Caspr3 and Caspr4, two novel members of the Caspr family are expressed in the nervous system and interact with PDZ domains.", "journal": "Mol. 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