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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Discovery of N-(2-chloro-6-methyl- phenyl)-2-(6-(4-(2-hydroxyethyl)- piperazin-1-yl)-2-methylpyrimidin-4- ylamino)thiazole-5-carboxamide (BMS-354825), a dual Src/Abl kinase inhibitor with potent antitumor activity in preclinical assays.", "journal": "Journal of medicinal chemistry", "date": "2004", "authors": "Lombardo LJ, Lee FY, Chen P, Norris D, Barrish JC, Behnia K, Castaneda S, Cornelius LA, Das J, Doweyko AM, Fairchild C, Hunt JT, Inigo I, Johnston K, Kamath A, Kan D, Klei H, Marathe P, Pang S, Peterson R, Pitt S, Schieven GL, Schmidt RJ, Tokarski J, Wen ML, Wityak J, Borzilleri RM", "reference": { "type": "PubMed", "id": "15615512", "url": "https://pubmed.ncbi.nlm.nih.gov/15615512" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZP0-1", "protein_name": "Platelet-derived growth factor D", "gene_name": "PDGFD", "tax_name": "Human" }, { 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"authors": "Mathias TJ, Natarajan K, Shukla S, Doshi KA, Singh ZN, Ambudkar SV, Baer MR", "reference": { "type": "PubMed", "id": "25597754", "url": "https://pubmed.ncbi.nlm.nih.gov/25597754" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZP0-1", "protein_name": "Platelet-derived growth factor D", "gene_name": "PDGFD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05209-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 12", "gene_name": "PTPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" 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[] } ] }, { "title": "A precision therapy against cancers driven by KIT/PDGFRA mutations.", "journal": "Science translational medicine", "date": "2017", "authors": "Evans EK, Gardino AK, Kim JL, Hodous BL, Shutes A, Davis A, Zhu XJ, Schmidt-Kittler O, Wilson D, Wilson K, DiPietro L, Zhang Y, Brooijmans N, LaBranche TP, Wozniak A, Gebreyohannes YK, Schoffski P, Heinrich MC, DeAngelo DJ, Miller S, Wolf B, Kohl N, Guzi T, Lydon N, Boral A, Lengauer C", "reference": { "type": "PubMed", "id": "29093181", "url": "https://pubmed.ncbi.nlm.nih.gov/29093181" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZP0-1", "protein_name": "Platelet-derived growth factor D", "gene_name": "PDGFD", "tax_name": "Human" }, { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Potential Founder Variants in COL4A4 Identified in Bukharian Jews Linked to Autosomal Dominant and Autosomal Recessive Alport Syndrome.", "journal": "Genes", "date": "2023-09-23", "authors": "Levy Michal, Bazak Lily, Lev-El Noa, Greenberg Rotem, Kropach Nesia, Basel-Salmon Lina, Maya Idit", "reference": { "type": "PubMed", "id": "37895203", "url": "https://pubmed.ncbi.nlm.nih.gov/37895203" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P53420", "url": "https://www.uniprot.org/uniprotkb/P53420" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.37895203", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Is there a dominant-negative effect in individuals with heterozygous disease-causing variants in COL4A3/COL4A4?", "journal": "Clinical genetics", "date": "2024-04", "authors": "Riedhammer Korbinian M, Simmendinger Hannes, Tasic Velibor, Putnik Jovana, Abazi-Emini Nora, Stajic Natasa, Berutti Riccardo, Weidenbusch Marc, Patzer Ludwig, Lungu Adrian, Milosevski-Lomic Gordana, G\u00fcnthner Roman, Braunisch Matthias C, \u0106omi\u0107 Jasmina, Hoefele Julia", "reference": { "type": "PubMed", "id": "38214412", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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[] } ] }, { "title": "Benign familial hematuria due to mutation of the type IV collagen alpha4 gene.", "journal": "The Journal of clinical investigation", "date": "1996", "authors": "Lemmink HH, Nillesen WN, Mochizuki T, Schroder CH, Brunner HG, van Oost BA, Monnens LA, Smeets HJ", "reference": { "type": "PubMed", "id": "8787673", "url": "https://pubmed.ncbi.nlm.nih.gov/8787673" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P53420", "url": "https://www.uniprot.org/uniprotkb/P53420" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8787673", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16234-1", "protein_name": "Platelet-derived growth factor receptor alpha", "gene_name": "PDGFRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35442-1", "protein_name": "Thrombospondin-2", "gene_name": "THBS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35443-1", "protein_name": "Thrombospondin-4", "gene_name": "THBS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": 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Mutat.", "date": "1997", "authors": "Lemmink H H, Schr\u00f6der C H, Monnens L A, Smeets H J", "reference": { "type": "PubMed", "id": "9195222", "url": "https://pubmed.ncbi.nlm.nih.gov/9195222" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P53420", "url": "https://www.uniprot.org/uniprotkb/P53420" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9195222", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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syndrome.", "journal": "American journal of human genetics", "date": "1998", "authors": "Boye E, Mollet G, Forestier L, Cohen-Solal L, Heidet L, Cochat P, Grunfeld JP, Palcoux JB, Gubler MC, Antignac C", "reference": { "type": "PubMed", "id": "9792860", "url": "https://pubmed.ncbi.nlm.nih.gov/9792860" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P53420", "url": "https://www.uniprot.org/uniprotkb/P53420" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9792860", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Organization of the gene encoding cellular nucleic acid-binding protein.", "journal": "Gene", "date": "1995", "authors": "Flink I L, Morkin E", "reference": { "type": "PubMed", "id": "7590281", "url": "https://pubmed.ncbi.nlm.nih.gov/7590281" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P62633-1", "protein_name": "CCHC-type zinc finger nucleic acid binding protein", "gene_name": "CNBP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P62633", "url": "https://www.uniprot.org/uniprotkb/P62633" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7590281", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The riddle of the dual expression of IgM and IgD.", "journal": "Immunology", "date": "2006", "authors": "Geisberger Roland, Lamers Marinus, Achatz Gernot", "reference": { "type": "PubMed", "id": "16895553", "url": "https://pubmed.ncbi.nlm.nih.gov/16895553" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P01871-2", "protein_name": "Immunoglobulin heavy constant mu", "gene_name": "IGHM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01880-2", "protein_name": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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Architecture of the complete IgM-molecule.", "journal": "Hoppe-Seyler's Z. Physiol. 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