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Cell", "date": "1999", "authors": "Wu AL, Wang J, Zheleznyak A, Brown EJ", "reference": { "type": "PubMed", "id": "10549293", "url": "https://pubmed.ncbi.nlm.nih.gov/10549293" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8R317-1", "protein_name": "Ubiquilin-1", "gene_name": "Ubqln1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QZM0-1", "protein_name": "Ubiquilin-2", "gene_name": "Ubqln2", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q08722", "url": "https://www.uniprot.org/uniprotkb/Q08722" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10549293", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Normal ligand binding and signaling by CD47 (integrin-associated protein) requires a long range disulfide bond between the extracellular and membrane-spanning domains.", "journal": "J. Biol. Chem.", "date": "2001", "authors": "Rebres R A, Vaz L E, Green J M, Brown E J", "reference": { "type": "PubMed", "id": "11454874", "url": "https://pubmed.ncbi.nlm.nih.gov/11454874" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q08722", "url": "https://www.uniprot.org/uniprotkb/Q08722" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11454874", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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Fas/CD95-mediated apoptosis.", "journal": "J. 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Biophys. Acta", "date": "2012", "authors": "De Oliveira S, Vitorino de Almeida V, Calado A, Ros\u00e1rio H S, Saldanha C", "reference": { "type": "PubMed", "id": "22079249", "url": "https://pubmed.ncbi.nlm.nih.gov/22079249" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q08722", "url": "https://www.uniprot.org/uniprotkb/Q08722" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22079249", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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J.", "date": "1994", "authors": "Mawby W J, Holmes C H, Anstee D J, Spring F A, Tanner M J", "reference": { "type": "PubMed", "id": "7998989", "url": "https://pubmed.ncbi.nlm.nih.gov/7998989" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q08722", "url": "https://www.uniprot.org/uniprotkb/Q08722" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7998989", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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Mutat.", "date": "1999", "authors": "Cleaver J E, Thompson L H, Richardson A S, States J C", "reference": { "type": "PubMed", "id": "10447254", "url": "https://pubmed.ncbi.nlm.nih.gov/10447254" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28715-1", "protein_name": "DNA excision repair protein ERCC-5", "gene_name": "ERCC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01831-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "XPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA excision repair protein ERCC-6", "gene_name": "ERCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92889-1", "protein_name": "DNA repair endonuclease XPF", "gene_name": "ERCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P19447", "url": "https://www.uniprot.org/uniprotkb/P19447" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10447254", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of four single nucleotide polymorphisms in DNA repair genes: XPA and XPB (ERCC3) in Polish population.", "journal": "Hum. Mutat.", "date": "2000", "authors": "Butkiewicz D, Rusin M, Harris C C, Chorazy M", "reference": { "type": "PubMed", "id": "10862089", "url": "https://pubmed.ncbi.nlm.nih.gov/10862089" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P19447", "url": "https://www.uniprot.org/uniprotkb/P19447" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10862089", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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"Molecular cloning and biological characterization of the human excision repair gene ERCC-3.", "journal": "Mol. Cell. 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defect by basal transcription factor BTF2 (TFIIH).", "journal": "The EMBO journal", "date": "1994-04-01", "authors": "van Vuuren A J, Vermeulen W, Ma L, Weeda G, Appeldoorn E, Jaspers N G, van der Eb A J, Bootsma D, Hoeijmakers J H, Humbert S", "reference": { "type": "PubMed", "id": "8157004", "url": "https://pubmed.ncbi.nlm.nih.gov/8157004" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P19447", "url": "https://www.uniprot.org/uniprotkb/P19447" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 346, "end_pos": 346, "sequence_org": "K", "sequence_mut": "R", "comment": "Dominant-negative effect on transcription and 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helicase defect in repair/transcription factor TFIIH of xeroderma pigmentosum group B affects both DNA repair and transcription.", "journal": "The Journal of biological chemistry", "date": "1996", "authors": "Hwang JR, Moncollin V, Vermeulen W, Seroz T, van Vuuren H, Hoeijmakers JH, Egly JM", "reference": { "type": "PubMed", "id": "8663148", "url": "https://pubmed.ncbi.nlm.nih.gov/8663148" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P19447", "url": "https://www.uniprot.org/uniprotkb/P19447" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8663148", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Natl. Acad. Sci. 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[] } ] }, { "title": "CD10/neutral endopeptidase 24.11 is phosphorylated by casein kinase II and coassociates with other phosphoproteins including the lyn src-related kinase.", "journal": "Blood", "date": "1996", "authors": "Ganju RK, Shpektor RG, Brenner DG, Shipp MA", "reference": { "type": "PubMed", "id": "8943850", "url": "https://pubmed.ncbi.nlm.nih.gov/8943850" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P08473-1", "protein_name": "Neprilysin", "gene_name": "MME", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P08473", "url": "https://www.uniprot.org/uniprotkb/P08473" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 6, "end_pos": 6, "kinase_uniprot_canonical_ac": "P67870-1", "kinase_gene_name": "CSNK2B", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", 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Onai N, Murai M, Enomoto M, Poonpiriya V, Hamada T, Motomura K, Suwa M, Ezaki T, Haga T, Kanegasaki S, Matsushima K", "reference": { "type": "PubMed", "id": "15995708", "url": "https://pubmed.ncbi.nlm.nih.gov/15995708" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8R480-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "Nup85", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P41597-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "CCR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BW27", "url": "https://www.uniprot.org/uniprotkb/Q9BW27" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15995708", "abstract": "", 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correlation between high expression of nucleoporin 85 (NUP85) and immune cell infiltration in hepatocellular carcinoma].", "journal": "Xi bao yu fen zi mian yi xue za zhi = Chinese journal of cellular and molecular immunology", "date": "2024-06", "authors": "Liu Xinyu, Ding Zebang, Wu Huan, Ma Junjie, Lu Jin", "reference": { "type": "PubMed", "id": "38952090", "url": "https://pubmed.ncbi.nlm.nih.gov/38952090" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BW27", "url": "https://www.uniprot.org/uniprotkb/Q9BW27" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38952090", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Cell Sci.", "date": "2002", "authors": "Ghassemifar M Reza, Sheth Bhavwanti, Papenbrock Tom, Leese Henry J, Houghton Franchesca D, Fleming Tom P", "reference": { "type": "PubMed", "id": "12118072", "url": "https://pubmed.ncbi.nlm.nih.gov/12118072" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q16625-1", "protein_name": "Occludin", "gene_name": "OCLN", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q16625", "url": "https://www.uniprot.org/uniprotkb/Q16625" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12118072", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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