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Physiol.", "date": "2012", "authors": "Yamamoto H, Morino K, Nishio Y, Ugi S, Yoshizaki T, Kashiwagi A, Maegawa H", "reference": { "type": "PubMed", "id": "23047984", "url": "https://pubmed.ncbi.nlm.nih.gov/23047984" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BUR3-1", "protein_name": "Forkhead box protein J3", "gene_name": "Foxj3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BUR3", "url": "https://www.uniprot.org/uniprotkb/Q8BUR3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23047984", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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maintaining stereocilia integrity and function.", "journal": "EMBO molecular medicine", "date": "2019", "authors": "Dunbar LA, Patni P, Aguilar C, Mburu P, Corns L, Wells HR, Delmaghani S, Parker A, Johnson S, Williams D, Esapa CT, Simon MM, Chessum L, Newton S, Dorning J, Jeyarajan P, Morse S, Lelli A, Codner GF, Peineau T, Gopal SR, Alagramam KN, Hertzano R, Dulon D, Wells S, Williams FM, Petit C, Dawson SJ, Brown SD, Marcotti W, El-Amraoui A, Bowl MR", "reference": { "type": "PubMed", "id": "31448880", "url": "https://pubmed.ncbi.nlm.nih.gov/31448880" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B2RVW2-1", "protein_name": "Clarin-2", "gene_name": "Clrn2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A0PK11-1", "protein_name": "Clarin-2", "gene_name": "CLRN2", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "B2RVW2", "url": "https://www.uniprot.org/uniprotkb/B2RVW2" 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Shifting boundaries of retinoic acid activity control hindbrain segmental gene expression.", "journal": "Development (Cambridge, England)", "date": "2005", "authors": "Sirbu IO, Gresh L, Barra J, Duester G", "reference": { "type": "PubMed", "id": "15872003", "url": "https://pubmed.ncbi.nlm.nih.gov/15872003" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B2RXA7-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "Cyp26c1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "B2RXA7", "url": "https://www.uniprot.org/uniprotkb/B2RXA7" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15872003", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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[10090]" } ], "record_id": "pubmed.8631787", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and functional expression of mCCR2, a murine receptor for the C-C chemokines JE and FIC.", "journal": "The Journal of biological chemistry", "date": "1996", "authors": "Kurihara T, Bravo R", "reference": { "type": "PubMed", "id": "8662823", "url": "https://pubmed.ncbi.nlm.nih.gov/8662823" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51683-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "Ccr2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P51683", "url": "https://www.uniprot.org/uniprotkb/P51683" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8662823", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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Neurosci. Res.", "date": "1996", "authors": "Heesen M, Tanabe S, Berman MA, Yoshizawa I, Luo Y, Kim RJ, Post TW, Gerard C, Dorf ME", "reference": { "type": "PubMed", "id": "8872898", "url": "https://pubmed.ncbi.nlm.nih.gov/8872898" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51683-1", "protein_name": "C-C chemokine receptor type 2", "gene_name": "Ccr2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P51683", "url": "https://www.uniprot.org/uniprotkb/P51683" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8872898", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" 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"tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62401-1", "protein_name": "C-C motif chemokine 12", "gene_name": "Ccl12", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P51683", "url": "https://www.uniprot.org/uniprotkb/P51683" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8996246", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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genomic organization and cell-binding characteristics of mouse Spalpha.", "journal": "Immunology", "date": "2000", "authors": "Gebe JA, Llewellyn M, Hoggatt H, Aruffo A", "reference": { "type": "PubMed", "id": "10651944", "url": "https://pubmed.ncbi.nlm.nih.gov/10651944" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QWK4-1", "protein_name": "CD5 antigen-like", "gene_name": "Cd5l", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QWK4", "url": "https://www.uniprot.org/uniprotkb/Q9QWK4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10651944", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Macrophage-derived AIM is endocytosed into adipocytes and decreases lipid droplets via inhibition of fatty acid synthase activity.", "journal": "Cell metabolism", "date": "2010-06-09", "authors": "Kurokawa Jun, Arai Satoko, Nakashima Katsuhiko, Nagano Hiromichi, Nishijima Akemi, Miyata Keishi, Ose Rui, Mori Mayumi, Kubota Naoto, Kadowaki Takashi, Oike Yuichi, Koga Hisashi, Febbraio Maria, Iwanaga Toshihiko, Miyazaki Toru", "reference": { "type": "PubMed", "id": "20519120", "url": "https://pubmed.ncbi.nlm.nih.gov/20519120" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QWK4-1", "protein_name": "CD5 antigen-like", "gene_name": "Cd5l", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QWK4", 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required for obesity-associated recruitment of inflammatory macrophages into adipose tissue.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-07-19", "authors": "Kurokawa Jun, Nagano Hiromichi, Ohara Osamu, Kubota Naoto, Kadowaki Takashi, Arai Satoko, Miyazaki Toru", "reference": { "type": "PubMed", "id": "21730133", "url": "https://pubmed.ncbi.nlm.nih.gov/21730133" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QWK4-1", "protein_name": "CD5 antigen-like", "gene_name": "Cd5l", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QWK4", "url": "https://www.uniprot.org/uniprotkb/Q9QWK4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.21730133", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Tsugawa Y, Sugisawa R, Matsumoto A, Mori M, Yoshihara Y, Doi K, Maehara N, Kusunoki S, Takahata A, Noiri E, Suzuki Y, Yahagi N, Nishiyama A, Gunaratnam L, Takano T, Miyazaki T", "reference": { "type": "PubMed", "id": "26726878", "url": "https://pubmed.ncbi.nlm.nih.gov/26726878" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QWK4-1", "protein_name": "CD5 antigen-like", "gene_name": "Cd5l", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O43866-1", "protein_name": "CD5 antigen-like", "gene_name": "CD5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNS5-1", "protein_name": "Hepatitis A virus cellular receptor 1 homolog", "gene_name": "Havcr1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96D42-1", "protein_name": "Hepatitis A virus cellular receptor 1", "gene_name": "HAVCR1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QWK4", "url": 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an open groove that binds the AIM protein.", "journal": "Science advances", "date": "2018-10", "authors": "Hiramoto Emiri, Tsutsumi Akihisa, Suzuki Risa, Matsuoka Shigeru, Arai Satoko, Kikkawa Masahide, Miyazaki Toru", "reference": { "type": "PubMed", "id": "30324136", "url": "https://pubmed.ncbi.nlm.nih.gov/30324136" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QWK4-1", "protein_name": "CD5 antigen-like", "gene_name": "Cd5l", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P01871-2", "protein_name": "Immunoglobulin heavy constant mu", "gene_name": "IGHM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01872-1", "protein_name": "Immunoglobulin heavy constant mu", "gene_name": "Ighm", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QWK4", "url": "https://www.uniprot.org/uniprotkb/Q9QWK4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 194, "end_pos": 194, "sequence_org": "C", "sequence_mut": "S", "comment": "Abolishes interaction with IgM.", "evidence": [ { "database": "UniProtKB", "id": "Q9QWK4", "url": "https://www.uniprot.org/uniprotkb/Q9QWK4" }, { "database": "PubMed", "id": "30324136", "url": "https://pubmed.ncbi.nlm.nih.gov/30324136" } ], "uniprot_canonical_ac": "Q9QWK4-1" }, { "start_pos": 414, "end_pos": 414, "sequence_org": "C", "sequence_mut": "S", "comment": "Abolishes interaction with CD5L.", "evidence": [ { "database": "UniProtKB", "id": "P01872", "url": "https://www.uniprot.org/uniprotkb/P01872" }, { "database": "PubMed", "id": "30324136", "url": "https://pubmed.ncbi.nlm.nih.gov/30324136" } ], "uniprot_canonical_ac": "P01872-1" } ], "record_id": "pubmed.30324136", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CD5L is upregulated upon infection with Mycobacterium tuberculosis with no effect on disease progression.", "journal": "Immunology", "date": "2024-10", "authors": "Cardoso Marcos S, Gon\u00e7alves Rute, Oliveira Liliana, Silv\u00e9rio Diogo, T\u00e9llez \u00c9rica, Paul Tony, Sarrias Maria Rosa, Carmo Alexandre M, Saraiva Margarida", "reference": { "type": "PubMed", "id": "38922694", "url": "https://pubmed.ncbi.nlm.nih.gov/38922694" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QWK4-1", "protein_name": "CD5 antigen-like", "gene_name": "Cd5l", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QWK4", "url": "https://www.uniprot.org/uniprotkb/Q9QWK4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus 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"journal": "The Journal of experimental medicine", "date": "1999", "authors": "Miyazaki T, Hirokami Y, Matsuhashi N, Takatsuka H, Naito M", "reference": { "type": "PubMed", "id": "9892623", "url": "https://pubmed.ncbi.nlm.nih.gov/9892623" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QWK4-1", "protein_name": "CD5 antigen-like", "gene_name": "Cd5l", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QWK4", "url": "https://www.uniprot.org/uniprotkb/Q9QWK4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9892623", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CD19 regulates Src family protein tyrosine kinase activation in B lymphocytes through processive amplification.", "journal": "Immunity", "date": "2000", "authors": "Fujimoto M, Fujimoto Y, Poe JC, Jansen PJ, Lowell CA, DeFranco AL, Tedder TF", "reference": { "type": "PubMed", "id": "10933394", "url": "https://pubmed.ncbi.nlm.nih.gov/10933394" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P25918-1", "protein_name": "B-lymphocyte antigen CD19", "gene_name": "Cd19", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P15391-1", "protein_name": "B-lymphocyte antigen CD19", "gene_name": "CD19", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P25918", "url": "https://www.uniprot.org/uniprotkb/P25918" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "phosphorylation": [ { "start_pos": 493, "end_pos": 493, "kinase_uniprot_canonical_ac": "P25911-1", "kinase_gene_name": "Lyn", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25918", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25918" }, { "database": "PubMed", "id": "10933394", "url": "https://pubmed.ncbi.nlm.nih.gov/10933394" } ], "site_lbl": "Tyr493", "uniprot_canonical_ac": "P25918-1" }, { "start_pos": 522, "end_pos": 522, "kinase_uniprot_canonical_ac": "P25911-1", "kinase_gene_name": "Lyn", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25918", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25918" }, { "database": "PubMed", "id": "10933394", "url": "https://pubmed.ncbi.nlm.nih.gov/10933394" } ], "site_lbl": "Tyr522", "uniprot_canonical_ac": "P25918-1" }, { "start_pos": 409, "end_pos": 409, "kinase_uniprot_canonical_ac": "P07948-1", "kinase_gene_name": "LYN", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P15391", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15391" }, { "database": "PubMed", "id": "10933394", "url": "https://pubmed.ncbi.nlm.nih.gov/10933394" } ], "site_lbl": "Tyr409", "uniprot_canonical_ac": "P15391-1" }, { "start_pos": 500, "end_pos": 500, "kinase_uniprot_canonical_ac": "P07948-1", "kinase_gene_name": "LYN", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P15391", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15391" }, { "database": "PubMed", "id": "10933394", "url": "https://pubmed.ncbi.nlm.nih.gov/10933394" } ], "site_lbl": "Tyr500", "uniprot_canonical_ac": "P15391-1" }, { "start_pos": 531, "end_pos": 531, "kinase_uniprot_canonical_ac": "P07948-1", "kinase_gene_name": "LYN", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P15391", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15391" }, { "database": "PubMed", "id": "10933394", "url": "https://pubmed.ncbi.nlm.nih.gov/10933394" }, { "database": "PubMed", "id": "16497976", "url": "https://pubmed.ncbi.nlm.nih.gov/16497976" } ], "site_lbl": "Tyr531", "uniprot_canonical_ac": "P15391-1" }, { "start_pos": 531, "end_pos": 531, "kinase_uniprot_canonical_ac": "Q06187-1", "kinase_gene_name": "BTK", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P15391", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15391" }, { "database": "PubMed", "id": "10933394", "url": "https://pubmed.ncbi.nlm.nih.gov/10933394" }, { "database": "PubMed", "id": "16497976", "url": "https://pubmed.ncbi.nlm.nih.gov/16497976" } ], "site_lbl": "Tyr531", "uniprot_canonical_ac": "P15391-1" } ], "record_id": "pubmed.10933394", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 5 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The c-Abl tyrosine kinase is regulated downstream of the B cell antigen receptor and interacts with CD19.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2000", "authors": "Zipfel PA, Grove M, Blackburn K, Fujimoto M, Tedder TF, Pendergast AM", "reference": { "type": "PubMed", "id": "11120811", "url": "https://pubmed.ncbi.nlm.nih.gov/11120811" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P25918-1", "protein_name": "B-lymphocyte antigen CD19", "gene_name": "Cd19", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P15391-1", "protein_name": "B-lymphocyte antigen CD19", "gene_name": "CD19", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P25918", "url": "https://www.uniprot.org/uniprotkb/P25918" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "phosphorylation": [ { "start_pos": 501, "end_pos": 501, "kinase_uniprot_canonical_ac": "P00520-1", "kinase_gene_name": "Abl1", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25918", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25918" }, { "database": "PubMed", "id": "11120811", "url": "https://pubmed.ncbi.nlm.nih.gov/11120811" } ], "site_lbl": "Tyr501", "uniprot_canonical_ac": "P25918-1" }, { "start_pos": 508, "end_pos": 508, "kinase_uniprot_canonical_ac": "P00519-1", "kinase_gene_name": "ABL1", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P15391", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15391" }, { "database": "PubMed", "id": "11120811", "url": "https://pubmed.ncbi.nlm.nih.gov/11120811" } ], "site_lbl": "Tyr508", "uniprot_canonical_ac": "P15391-1" } ], "record_id": "pubmed.11120811", "abstract": "", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The physiologic role of CD19 cytoplasmic tyrosines.", "journal": "Immunity", "date": "2002", "authors": "Wang Y, Brooks SR, Li X, Anzelon AN, Rickert RC, Carter RH", "reference": { "type": "PubMed", "id": "12387743", "url": "https://pubmed.ncbi.nlm.nih.gov/12387743" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P25918-1", "protein_name": "B-lymphocyte antigen CD19", "gene_name": "Cd19", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P15391-1", "protein_name": "B-lymphocyte antigen CD19", "gene_name": "CD19", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P25918", "url": "https://www.uniprot.org/uniprotkb/P25918" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 348, "end_pos": 348, "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on the ability to complement impaired B cell development and functions; when associated with F-378.", "evidence": [ { "database": "UniProtKB", "id": "P15391", "url": "https://www.uniprot.org/uniprotkb/P15391" }, { "database": "PubMed", "id": "12387743", "url": "https://pubmed.ncbi.nlm.nih.gov/12387743" } ], "uniprot_canonical_ac": "P15391-1" }, { "start_pos": 378, "end_pos": 378, "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on the ability to complement impaired B cell development and functions; when associated with F-348.", "evidence": [ { "database": "UniProtKB", "id": "P15391", "url": "https://www.uniprot.org/uniprotkb/P15391" }, { "database": "PubMed", "id": "12387743", "url": "https://pubmed.ncbi.nlm.nih.gov/12387743" } ], "uniprot_canonical_ac": "P15391-1" }, { "start_pos": 409, "end_pos": 409, "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on the ability to complement impaired B cell development and functions; when associated with F-439.", "evidence": [ { "database": "UniProtKB", "id": "P15391", "url": "https://www.uniprot.org/uniprotkb/P15391" }, { "database": "PubMed", "id": "12387743", "url": "https://pubmed.ncbi.nlm.nih.gov/12387743" } ], "uniprot_canonical_ac": "P15391-1" }, { "start_pos": 421, "end_pos": 421, "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on the ability to complement impaired B cell development and functions; when associated with F-461.", "evidence": [ { "database": "UniProtKB", "id": "P15391", "url": "https://www.uniprot.org/uniprotkb/P15391" }, { "database": "PubMed", "id": "12387743", "url": "https://pubmed.ncbi.nlm.nih.gov/12387743" } ], "uniprot_canonical_ac": "P15391-1" }, { "start_pos": 439, "end_pos": 439, "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on the ability to complement impaired B cell development and functions; when associated with F-409.", "evidence": [ { "database": "UniProtKB", "id": "P15391", "url": "https://www.uniprot.org/uniprotkb/P15391" }, { "database": "PubMed", "id": "12387743", "url": "https://pubmed.ncbi.nlm.nih.gov/12387743" } ], "uniprot_canonical_ac": "P15391-1" }, { "start_pos": 461, "end_pos": 461, "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on the ability to complement impaired B cell development and functions; when associated with F-421.", "evidence": [ { "database": "UniProtKB", "id": "P15391", "url": "https://www.uniprot.org/uniprotkb/P15391" }, { "database": "PubMed", "id": "12387743", "url": "https://pubmed.ncbi.nlm.nih.gov/12387743" } ], "uniprot_canonical_ac": "P15391-1" }, { "start_pos": 500, "end_pos": 500, "sequence_org": "Y", "sequence_mut": "F", "comment": "Strongly reduced tyrosine phosphorylation; when associated with F-531. Abolishes activation of signaling pathways that mediate mobilization of cytoplasmic Ca(2+); when associated with F-531. Abolishes the ability to complement impaired B cell development and functions; when associated with F-531.", "evidence": [ { "database": "UniProtKB", "id": "P15391", "url": "https://www.uniprot.org/uniprotkb/P15391" }, { "database": "PubMed", "id": "9382888", "url": "https://pubmed.ncbi.nlm.nih.gov/9382888" }, { "database": "PubMed", "id": "12387743", "url": "https://pubmed.ncbi.nlm.nih.gov/12387743" }, { "database": "PubMed", "id": "7684160", "url": "https://pubmed.ncbi.nlm.nih.gov/7684160" } ], "uniprot_canonical_ac": "P15391-1" }, { "start_pos": 531, "end_pos": 531, "sequence_org": "Y", "sequence_mut": "F", "comment": "Strongly reduced tyrosine phosphorylation; when associated with F-500. Abolishes activation of signaling pathways that mediate mobilization of cytoplasmic Ca(2+); when associated with F-500. 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activate signaling pathways that mediate mobilization of cytoplasmic Ca(2+). Abolishes the ability to restore normal B cell functions and responses to antigenic stimuli.", "evidence": [ { "database": "UniProtKB", "id": "P15391", "url": "https://www.uniprot.org/uniprotkb/P15391" }, { "database": "PubMed", "id": "9317126", "url": "https://pubmed.ncbi.nlm.nih.gov/9317126" } ], "uniprot_canonical_ac": "P15391-1" } ], "record_id": "pubmed.9317126", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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CD8alphabeta heterodimer and comparison with the CD8alphaalpha homodimer.", "journal": "Immunity", "date": "2005", "authors": "Chang Hsiu-Ching, Tan Kemin, Ouyang Jing, Parisini Emilio, Liu Jin-huan, Le Yi, Wang Xiasong, Reinherz Ellis L, Wang Jia-huai", "reference": { "type": "PubMed", "id": "16356863", "url": "https://pubmed.ncbi.nlm.nih.gov/16356863" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10300-1", "protein_name": "T-cell surface glycoprotein CD8 beta chain", "gene_name": "Cd8b", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10300", "url": "https://www.uniprot.org/uniprotkb/P10300" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16356863", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Mol. Biol.", "date": "2008", "authors": "Shore DA, Issafras H, Landais E, Teyton L, Wilson IA", "reference": { "type": "PubMed", "id": "18929574", "url": "https://pubmed.ncbi.nlm.nih.gov/18929574" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10300-1", "protein_name": "T-cell surface glycoprotein CD8 beta chain", "gene_name": "Cd8b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P01731-1", "protein_name": "T-cell surface glycoprotein CD8 alpha chain", "gene_name": "Cd8a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P01012-1", "protein_name": "Ovalbumin", "gene_name": "SERPINB14", "tax_name": "Chicken" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10300", "url": "https://www.uniprot.org/uniprotkb/P10300" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CD8beta knockout mice mount normal anti-viral CD8+ T cell responses -- but why?", "journal": "Int. Immunol.", "date": "2009", "authors": "Angelov Georgi S, Guillaume Philippe, Luescher Immanuel F", "reference": { "type": "PubMed", "id": "19088062", "url": "https://pubmed.ncbi.nlm.nih.gov/19088062" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10300-1", "protein_name": "T-cell surface glycoprotein CD8 beta chain", "gene_name": "Cd8b", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10300", "url": "https://www.uniprot.org/uniprotkb/P10300" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19088062", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gene transfer of the Ly-3 chain gene of the mouse CD8 molecular complex: co-transfer with the Ly-2 polypeptide gene results in detectable cell surface expression of the Ly-3 antigenic determinants.", "journal": "Eur. J. Immunol.", "date": "1988", "authors": "Blanc D, Bron C, Gabert J, Letourneur F, MacDonald H R, Malissen B", "reference": { "type": "PubMed", "id": "2452747", "url": "https://pubmed.ncbi.nlm.nih.gov/2452747" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10300-1", "protein_name": "T-cell surface glycoprotein CD8 beta chain", "gene_name": "Cd8b", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10300", "url": "https://www.uniprot.org/uniprotkb/P10300" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.2452747", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation and characterization of the mouse CD8 beta-chain (Ly-3) genes. Absence of an intervening sequence between V- and J-like gene segments.", "journal": "J. Immunol.", "date": "1989", "authors": "Nakayama K, Shinkai Y I, Okumura K, Nakauchi H", "reference": { "type": "PubMed", "id": "2784466", "url": "https://pubmed.ncbi.nlm.nih.gov/2784466" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10300-1", "protein_name": "T-cell surface glycoprotein CD8 beta chain", "gene_name": "Cd8b", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10300", "url": "https://www.uniprot.org/uniprotkb/P10300" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.2784466", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning of Lyt-3, a membrane glycoprotein marking a subset of mouse T lymphocytes: molecular homology to immunoglobulin and T-cell receptor variable and joining regions.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1987", "authors": "Nakauchi H, Shinkai Y, Okumura K", "reference": { "type": "PubMed", "id": "3035575", "url": "https://pubmed.ncbi.nlm.nih.gov/3035575" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10300-1", "protein_name": "T-cell surface glycoprotein CD8 beta chain", "gene_name": "Cd8b", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10300", "url": "https://www.uniprot.org/uniprotkb/P10300" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.3035575", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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expression drives innate CD8(+) T-cell differentiation via induction of iNKT2 cells.", "journal": "Life science alliance", "date": "2020", "authors": "Kojo S, Ohno-Oishi M, Wada H, Nieke S, Seo W, Muroi S, Taniuchi I", "reference": { "type": "PubMed", "id": "31980555", "url": "https://pubmed.ncbi.nlm.nih.gov/31980555" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10300-1", "protein_name": "T-cell surface glycoprotein CD8 beta chain", "gene_name": "Cd8b", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10300", "url": "https://www.uniprot.org/uniprotkb/P10300" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.31980555", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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Immunol.", "date": "1988", "authors": "Gorman S D, Sun Y H, Zamoyska R, Parnes J R", "reference": { "type": "PubMed", "id": "3258885", "url": "https://pubmed.ncbi.nlm.nih.gov/3258885" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10300-1", "protein_name": "T-cell surface glycoprotein CD8 beta chain", "gene_name": "Cd8b", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10300", "url": "https://www.uniprot.org/uniprotkb/P10300" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.3258885", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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U.S.A.", "date": "1987", "authors": "Panaccio M, Gillespie M T, Walker I D, Kirszbaum L, Sharpe J A, Tobias G H, McKenzie I F, Deacon N J", "reference": { "type": "PubMed", "id": "3498943", "url": "https://pubmed.ncbi.nlm.nih.gov/3498943" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10300-1", "protein_name": "T-cell surface glycoprotein CD8 beta chain", "gene_name": "Cd8b", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10300", "url": "https://www.uniprot.org/uniprotkb/P10300" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.3498943", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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through 2B4(CD244)/CD48 in the generation of NK effector functions.", "journal": "Blood", "date": "2006", "authors": "Lee KM, Forman JP, McNerney ME, Stepp S, Kuppireddi S, Guzior D, Latchman YE, Sayegh MH, Yagita H, Park CK, Oh SB, Wulfing C, Schatzle J, Mathew PA, Sharpe AH, Kumar V", "reference": { "type": "PubMed", "id": "15905190", "url": "https://pubmed.ncbi.nlm.nih.gov/15905190" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q07763-1", "protein_name": "Natural killer cell receptor 2B4", "gene_name": "Cd244", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q07763", "url": "https://www.uniprot.org/uniprotkb/Q07763" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15905190", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": 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"Immunity", "date": "2007", "authors": "Velikovsky C Alejandro, Deng Lu, Chlewicki Lukasz K, Fern\u00e1ndez Marisa M, Kumar Vinay, Mariuzza Roy A", "reference": { "type": "PubMed", "id": "17950006", "url": "https://pubmed.ncbi.nlm.nih.gov/17950006" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q07763-1", "protein_name": "Natural killer cell receptor 2B4", "gene_name": "Cd244", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P18181-1", "protein_name": "CD48 antigen", "gene_name": "Cd48", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q07763", "url": "https://www.uniprot.org/uniprotkb/Q07763" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17950006", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"date": "2010", "authors": "Wang N, Calpe S, Westcott J, Castro W, Ma C, Engel P, Schatzle JD, Terhorst C", "reference": { "type": "PubMed", "id": "20962259", "url": "https://pubmed.ncbi.nlm.nih.gov/20962259" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q07763-1", "protein_name": "Natural killer cell receptor 2B4", "gene_name": "Cd244", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q45HK4-1", "protein_name": "SH2 domain-containing protein 1B2", "gene_name": "Sh2d1b2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q18PI6-1", "protein_name": "SLAM family member 5", "gene_name": "Cd84", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35324-1", "protein_name": "SH2 domain-containing protein 1B", "gene_name": "Sh2d1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88890-1", "protein_name": "SH2 domain-containing protein 1A", "gene_name": "Sh2d1a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The adaptor SAP controls NK cell activation by regulating the enzymes Vav-1 and SHIP-1 and by enhancing conjugates with target cells.", "journal": "Immunity", "date": "2012", "authors": "Dong Z, Davidson D, Perez-Quintero LA, Kurosaki T, Swat W, Veillette A", "reference": { "type": "PubMed", "id": "22683124", "url": "https://pubmed.ncbi.nlm.nih.gov/22683124" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q07763-1", "protein_name": "Natural killer cell receptor 2B4", "gene_name": "Cd244", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88890-1", "protein_name": "SH2 domain-containing protein 1A", "gene_name": "Sh2d1a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q07763", "url": "https://www.uniprot.org/uniprotkb/Q07763" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 78, "end_pos": 78, "sequence_org": "R", "sequence_mut": "A", "comment": "No effect on NK cell development, impairs promotion of NK cell cytotoxicity and IFN-gamma production in response to hematopoietic cells.", "evidence": [ { "database": "UniProtKB", "id": "O88890", "url": "https://www.uniprot.org/uniprotkb/O88890" }, { "database": "PubMed", "id": "22683124", "url": "https://pubmed.ncbi.nlm.nih.gov/22683124" } ], "uniprot_canonical_ac": "O88890-1" } ], "record_id": "pubmed.22683124", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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