[ { "title": "Cloning of p97/Gab2, the major SHP2-binding protein in hematopoietic cells, reveals a novel pathway for cytokine-induced gene activation.", "journal": "Molecular cell", "date": "1998", "authors": "Gu H, Pratt JC, Burakoff SJ, Neel BG", "reference": { "type": "PubMed", "id": "9885561", "url": "https://pubmed.ncbi.nlm.nih.gov/9885561" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z1S8-1", "protein_name": "GRB2-associated-binding protein 2", "gene_name": "Gab2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q92835-1", "protein_name": "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1", "gene_name": "INPP5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42336-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform", "gene_name": "PIK3CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14784-1", "protein_name": "Interleukin-2 receptor subunit beta", "gene_name": "IL2RB", 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Acetylation of H2AX on lysine 36 plays a key role in the DNA double-strand break repair pathway.", "journal": "FEBS letters", "date": "2010", "authors": "Jiang X, Xu Y, Price BD", "reference": { "type": "PubMed", "id": "20488183", "url": "https://pubmed.ncbi.nlm.nih.gov/20488183" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P27661-1", "protein_name": "Histone H2AX", "gene_name": "H2ax", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P27661", "url": "https://www.uniprot.org/uniprotkb/P27661" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 10, "end_pos": 10, "sequence_org": "K", "sequence_mut": "A", "comment": "No effect on radiosensitivity; when associated with A-6, A-14 and A-16.", "evidence": [ { "database": "UniProtKB", "id": "P27661", "url": "https://www.uniprot.org/uniprotkb/P27661" }, { "database": "PubMed", "id": "20488183", "url": "https://pubmed.ncbi.nlm.nih.gov/20488183" } ], "uniprot_canonical_ac": "P27661-1" }, { "start_pos": 119, "end_pos": 120, "sequence_org": "KK", "sequence_mut": "AA", "comment": "Complete loss of ubiquitination and increased radiosensitivity.", "evidence": [ { "database": "UniProtKB", "id": "P27661", "url": "https://www.uniprot.org/uniprotkb/P27661" }, { "database": "PubMed", "id": "20488183", "url": "https://pubmed.ncbi.nlm.nih.gov/20488183" } ], "uniprot_canonical_ac": "P27661-1" }, { "start_pos": 140, "end_pos": 140, "sequence_org": "S", "sequence_mut": "A", "comment": "Increased genomic instability and radiosensitivity; when associated with A-137. Reduced homologous recombination. No effect on Lys-40 acetylation. Further increase in radiosensitivity; when associated with R-37.", "evidence": [ { "database": "UniProtKB", "id": "P27661", "url": "https://www.uniprot.org/uniprotkb/P27661" }, { "database": "PubMed", "id": "15610743", "url": "https://pubmed.ncbi.nlm.nih.gov/15610743" }, { "database": "PubMed", "id": "20488183", "url": "https://pubmed.ncbi.nlm.nih.gov/20488183" }, { "database": "PubMed", "id": "12914701", "url": "https://pubmed.ncbi.nlm.nih.gov/12914701" } ], "uniprot_canonical_ac": "P27661-1" }, { "start_pos": 14, "end_pos": 14, "sequence_org": "K", "sequence_mut": "A", "comment": "No effect on radiosensitivity; when associated with A-6, A-10 and A-16.", "evidence": [ { "database": "UniProtKB", "id": "P27661", "url": "https://www.uniprot.org/uniprotkb/P27661" }, { "database": "PubMed", "id": "20488183", "url": "https://pubmed.ncbi.nlm.nih.gov/20488183" } ], "uniprot_canonical_ac": "P27661-1" }, { "start_pos": 16, "end_pos": 16, "sequence_org": "K", "sequence_mut": "A", "comment": "No effect on radiosensitivity; when associated with A-6, A-10 and A-14.", "evidence": [ { "database": "UniProtKB", "id": "P27661", "url": "https://www.uniprot.org/uniprotkb/P27661" }, { "database": "PubMed", "id": "20488183", "url": "https://pubmed.ncbi.nlm.nih.gov/20488183" } ], "uniprot_canonical_ac": "P27661-1" }, { "start_pos": 37, "end_pos": 37, "sequence_org": "K", "sequence_mut": "A", "comment": "Increased radiosensitivity. No effect on phosphorylation after DNA damage. No effect on Ser-140 phosphorylation, nor on TP53BP1 recruitment to DNA double-strand breaks.", "evidence": [ { "database": "UniProtKB", "id": "P27661", "url": "https://www.uniprot.org/uniprotkb/P27661" }, { "database": "PubMed", "id": "20488183", "url": "https://pubmed.ncbi.nlm.nih.gov/20488183" } ], "uniprot_canonical_ac": "P27661-1" }, { "start_pos": 37, "end_pos": 37, "sequence_org": "K", "sequence_mut": "R", "comment": "No effect on phosphorylation after DNA damage, but increased radiosensitivity. Further increase in radiosensitivity; when associated with A-140.", "evidence": [ { "database": "UniProtKB", "id": "P27661", "url": "https://www.uniprot.org/uniprotkb/P27661" }, { "database": "PubMed", "id": "20488183", "url": "https://pubmed.ncbi.nlm.nih.gov/20488183" } ], "uniprot_canonical_ac": "P27661-1" }, { "start_pos": 6, "end_pos": 6, "sequence_org": "K", "sequence_mut": "A", "comment": "No effect on radiosensitivity; when associated with A-10, A-14 and A-16.", "evidence": [ { "database": "UniProtKB", "id": "P27661", "url": "https://www.uniprot.org/uniprotkb/P27661" }, { "database": "PubMed", "id": "20488183", "url": "https://pubmed.ncbi.nlm.nih.gov/20488183" } ], "uniprot_canonical_ac": "P27661-1" } ], "record_id": "pubmed.20488183", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolutionarily-conserved MZIP2 is essential for crossover formation in mammalian meiosis.", "journal": "Commun. Biol.", "date": "2018", "authors": "Zhang Qianting, Shao Jingchen, Fan Heng-Yu, Yu Chao", "reference": { "type": "PubMed", "id": "30272023", "url": "https://pubmed.ncbi.nlm.nih.gov/30272023" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P27661-1", "protein_name": "Histone H2AX", "gene_name": "H2ax", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5T7-1", "protein_name": "HORMA domain-containing protein 1", "gene_name": "Hormad1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35134-1", "protein_name": "DNA-directed RNA polymerase I subunit RPA1", "gene_name": "Polr1a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CTN5-1", "protein_name": "Protein SIX6OS1", "gene_name": "4930447C04Rik; Six6os1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SV06-1", "protein_name": "Spermatogenesis-associated protein 22", "gene_name": "Spata22", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q14AT2-1", "protein_name": "Testis-expressed protein 11", "gene_name": "Tex11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62209-1", "protein_name": "Synaptonemal complex protein 1", "gene_name": "Sycp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q08297-1", "protein_name": "DNA repair protein RAD51 homolog 1", "gene_name": "Rad51", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70700-1", "protein_name": "DNA-directed RNA polymerase I subunit RPA2", "gene_name": "Polr1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99MT2-1", "protein_name": "MutS protein homolog 4", "gene_name": "Msh4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2ALV5-1", "protein_name": "Protein shortage in chiasmata 1 ortholog", "gene_name": "Shoc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70281-1", "protein_name": "Synaptonemal complex protein 3", "gene_name": "Sycp3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P27661", "url": "https://www.uniprot.org/uniprotkb/P27661" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.30272023", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SPO16 binds SHOC1 to promote homologous recombination and crossing-over in meiotic prophase I.", "journal": "Sci. Adv.", "date": "2019", "authors": "Zhang Q, Ji SY, Busayavalasa K, Yu C", "reference": { "type": "PubMed", "id": "30746471", "url": "https://pubmed.ncbi.nlm.nih.gov/30746471" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P27661-1", "protein_name": "Histone H2AX", "gene_name": "H2ax", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5T7-1", "protein_name": "HORMA domain-containing protein 1", "gene_name": "Hormad1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35134-1", "protein_name": "DNA-directed RNA polymerase I subunit RPA1", "gene_name": "Polr1a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CTN5-1", "protein_name": "Protein SIX6OS1", "gene_name": "4930447C04Rik; Six6os1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61880-1", "protein_name": "Meiotic recombination protein DMC1 homolog", "gene_name": "Dmc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SV06-1", "protein_name": "Spermatogenesis-associated protein 22", "gene_name": "Spata22", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q14AT2-1", "protein_name": "Testis-expressed protein 11", "gene_name": "Tex11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3KQP7-1", "protein_name": "Protein SPO16 homolog", "gene_name": "1700028K03Rik; Spo16", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62209-1", "protein_name": "Synaptonemal complex protein 1", "gene_name": "Sycp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q08297-1", "protein_name": "DNA repair protein RAD51 homolog 1", "gene_name": "Rad51", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70700-1", "protein_name": "DNA-directed RNA polymerase I subunit RPA2", "gene_name": "Polr1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99MT2-1", "protein_name": "MutS protein homolog 4", "gene_name": "Msh4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2ALV5-1", "protein_name": "Protein shortage in chiasmata 1 ortholog", "gene_name": "Shoc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70281-1", "protein_name": "Synaptonemal complex protein 3", "gene_name": "Sycp3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P27661", "url": "https://www.uniprot.org/uniprotkb/P27661" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.30746471", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SIMPL is a tumor necrosis factor-specific regulator of nuclear factor-kappaB activity.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Vig E, Green M, Liu Y, Yu KY, Kwon HJ, Tian J, Goebl MG, Harrington MA", "reference": { "type": "PubMed", "id": "11096118", "url": "https://pubmed.ncbi.nlm.nih.gov/11096118" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ESJ7-1", "protein_name": "Interleukin-1 receptor-associated kinase 1-binding protein 1", "gene_name": "Irak1bp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5VVH5-1", "protein_name": "Interleukin-1 receptor-associated kinase 1-binding protein 1", "gene_name": "IRAK1BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q62406-1", "protein_name": "Interleukin-1 receptor-associated kinase 1", "gene_name": "Irak1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus 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[] } ] }, { "title": "LaXp180, a mammalian ActA-binding protein, identified with the yeast two-hybrid system co-localizes with intracellular Listeria monocytogenes.", "journal": "Cell. Microbiol.", "date": "2000", "authors": "Pfeuffer T, Goebel W, Laubinger J, Bachmann M, Kuhn M", "reference": { "type": "PubMed", "id": "11207567", "url": "https://pubmed.ncbi.nlm.nih.gov/11207567" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ESJ7-1", "protein_name": "Interleukin-1 receptor-associated kinase 1-binding protein 1", "gene_name": "Irak1bp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VC56-1", "protein_name": "E3 ubiquitin-protein ligase RNF8", "gene_name": "Rnf8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ESK9-1", "protein_name": "RB1-inducible coiled-coil protein 1", "gene_name": "Rb1cc1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9ESJ7", "url": "https://www.uniprot.org/uniprotkb/Q9ESJ7" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11207567", "abstract": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of SIMPL compromises TNF-alpha-dependent survival of hematopoietic progenitors.", "journal": "Experimental hematology", "date": "2010", "authors": "Benson EA, Goebl MG, Yang FC, Kapur R, McClintick J, Sanghani S, Clapp DW, Harrington MA", "reference": { "type": "PubMed", "id": "19941935", "url": "https://pubmed.ncbi.nlm.nih.gov/19941935" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ESJ7-1", "protein_name": "Interleukin-1 receptor-associated kinase 1-binding protein 1", "gene_name": "Irak1bp1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9ESJ7", "url": "https://www.uniprot.org/uniprotkb/Q9ESJ7" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19941935", "abstract": "", "glycosylation": [], 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[] } ] }, { "title": "Integrin beta cytoplasmic domain interactions with phosphotyrosine-binding domains: a structural prototype for diversity in integrin signaling.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2003", "authors": "Calderwood DA, Fujioka Y, de Pereda JM, Garcia-Alvarez B, Nakamoto T, Margolis B, McGlade CJ, Liddington RC, Ginsberg MH", "reference": { "type": "PubMed", "id": "12606711", "url": "https://pubmed.ncbi.nlm.nih.gov/12606711" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O54890-1", "protein_name": "Integrin beta-3", "gene_name": "Itgb3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P98078-1", "protein_name": "Disabled homolog 2", "gene_name": "Dab2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O70309-1", "protein_name": "Integrin beta-5", "gene_name": "Itgb5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O54890", "url": "https://www.uniprot.org/uniprotkb/O54890" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12606711", "abstract": "", 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Res.", "date": "2012", "authors": "Jung YK, Han SW, Kim GW, Jeong JH, Kim HJ, Choi JY", "reference": { "type": "PubMed", "id": "22492581", "url": "https://pubmed.ncbi.nlm.nih.gov/22492581" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O54890-1", "protein_name": "Integrin beta-3", "gene_name": "Itgb3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRK3-1", "protein_name": "Matrix remodeling-associated protein 8", "gene_name": "MXRA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9DBV4-1", "protein_name": "Matrix remodeling-associated protein 8", "gene_name": "Mxra8", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O54890", "url": "https://www.uniprot.org/uniprotkb/O54890" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": 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Commun.", "date": "2003", "authors": "Boch Jason A, Yoshida Yasuhiro, Koyama Yoshinobu, Wara-Aswapati Nawarat, Peng Hiabing, Unlu Sebnem, Auron Philip E", "reference": { "type": "PubMed", "id": "12659850", "url": "https://pubmed.ncbi.nlm.nih.gov/12659850" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61730-1", "protein_name": "Interleukin-1 receptor accessory protein", "gene_name": "Il1rap", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NPH3-1", "protein_name": "Interleukin-1 receptor accessory protein", "gene_name": "IL1RAP", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61730", "url": "https://www.uniprot.org/uniprotkb/Q61730" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12659850", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": 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responses to interleukin-1.", "journal": "Immunity", "date": "2009", "authors": "Smith Dirk E, Lipsky Brian P, Russell Chris, Ketchem Randal R, Kirchner Jacqueline, Hensley Kelly, Huang Yangyang, Friedman Wilma J, Boissonneault Vincent, Plante Marie-Mich\u00e8le, Rivest Serge, Sims John E", "reference": { "type": "PubMed", "id": "19481478", "url": "https://pubmed.ncbi.nlm.nih.gov/19481478" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61730-1", "protein_name": "Interleukin-1 receptor accessory protein", "gene_name": "Il1rap", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NPH3-1", "protein_name": "Interleukin-1 receptor accessory protein", "gene_name": "IL1RAP", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61730", "url": "https://www.uniprot.org/uniprotkb/Q61730" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], 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Mandy, Gerbaulet Alexander, Berod Luciana, Schons Julia, Dudeck Anne, Freitag Jenny, Grotha Stefan, Reich Daniela, Rudeschko Olga, Norgauer Johannes, Hartmann Karin, Roers Axel, Kamradt Thomas", "reference": { "type": "PubMed", "id": "20200353", "url": "https://pubmed.ncbi.nlm.nih.gov/20200353" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61730-1", "protein_name": "Interleukin-1 receptor accessory protein", "gene_name": "Il1rap", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P14719-1", "protein_name": "Interleukin-1 receptor-like 1", "gene_name": "Il1rl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05532-1", "protein_name": "Mast/stem cell growth factor receptor Kit", "gene_name": "Kit", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61730", "url": "https://www.uniprot.org/uniprotkb/Q61730" } ], "common_name": "Mouse", "glygen_name": "Mouse", 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Biol. Chem.", "date": "1995", "authors": "Greenfeder S A, Nunes P, Kwee L, Labow M, Chizzonite R A, Ju G", "reference": { "type": "PubMed", "id": "7775431", "url": "https://pubmed.ncbi.nlm.nih.gov/7775431" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61730-1", "protein_name": "Interleukin-1 receptor accessory protein", "gene_name": "Il1rap", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P18510-1", "protein_name": "Interleukin-1 receptor antagonist protein", "gene_name": "IL1RN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13504-1", "protein_name": "Interleukin-1 receptor type 1", "gene_name": "Il1r1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61730", "url": "https://www.uniprot.org/uniprotkb/Q61730" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.7775431", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The type II IL-1 receptor interacts with the IL-1 receptor accessory protein: a novel mechanism of regulation of IL-1 responsiveness.", "journal": "J. Immunol.", "date": "1998", "authors": "Lang D, Knop J, Wesche H, Raffetseder U, Kurrle R, Boraschi D, Martin M U", "reference": { "type": "PubMed", "id": "9862719", "url": "https://pubmed.ncbi.nlm.nih.gov/9862719" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61730-1", "protein_name": "Interleukin-1 receptor accessory protein", "gene_name": "Il1rap", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P27930-1", "protein_name": "Interleukin-1 receptor type 2", "gene_name": "IL1R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPH3-1", "protein_name": "Interleukin-1 receptor accessory protein", "gene_name": "IL1RAP", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61730", "url": "https://www.uniprot.org/uniprotkb/Q61730" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9862719", "abstract": "", 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Jun turnover is controlled through JNK-dependent phosphorylation of the E3 ligase Itch.", "journal": "Science (New York, N.Y.)", "date": "2004", "authors": "Gao M, Labuda T, Xia Y, Gallagher E, Fang D, Liu YC, Karin M", "reference": { "type": "PubMed", "id": "15358865", "url": "https://pubmed.ncbi.nlm.nih.gov/15358865" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8C863-1", "protein_name": "E3 ubiquitin-protein ligase Itchy", "gene_name": "Itch", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8C863", "url": "https://www.uniprot.org/uniprotkb/Q8C863" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15358865", "abstract": "", 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"glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of either Ser16 or Thr30 does not disrupt the structure of the Itch E3 ubiquitin ligase third WW domain.", "journal": "Proteins", "date": "2005", "authors": "Shaw Alison Z, Martin-Malpartida Pau, Morales Bego\u00f1a, Yraola Francesc, Royo Miriam, Macias Maria J", "reference": { "type": "PubMed", "id": "15971201", "url": "https://pubmed.ncbi.nlm.nih.gov/15971201" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8C863-1", "protein_name": "E3 ubiquitin-protein ligase Itchy", "gene_name": "Itch", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8C863", "url": "https://www.uniprot.org/uniprotkb/Q8C863" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15971201", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Activation of the E3 ubiquitin ligase Itch through a phosphorylation-induced conformational change.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Gallagher E, Gao M, Liu YC, Karin M", "reference": { "type": "PubMed", "id": "16446428", "url": "https://pubmed.ncbi.nlm.nih.gov/16446428" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8C863-1", "protein_name": "E3 ubiquitin-protein ligase Itchy", "gene_name": "Itch", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96J02-1", "protein_name": "E3 ubiquitin-protein ligase Itchy homolog", "gene_name": "ITCH", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8C863", "url": "https://www.uniprot.org/uniprotkb/Q8C863" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 199, "end_pos": 199, "sequence_org": "S", "sequence_mut": "A", "comment": "No loss of MAPK8-mediated phosphorylation and no effect on ligase activity. Almost complete inactivation of ligase activity; when associated with A-232. Greatly reduced MAPK8-mediated phosphorylation; when associated with A-222 or A-232. Completely abolishes MAPK8-mediated phosphorylation; when associated with A-222 and A-232.", "evidence": [ { "database": "UniProtKB", "id": "Q8C863", "url": "https://www.uniprot.org/uniprotkb/Q8C863" }, { "database": "PubMed", "id": "16446428", "url": "https://pubmed.ncbi.nlm.nih.gov/16446428" } ], "uniprot_canonical_ac": "Q8C863-1" }, { "start_pos": 199, "end_pos": 199, "sequence_org": "S", "sequence_mut": "D", "comment": "More sensitive to in vitro proteolysis.", "evidence": [ { "database": "UniProtKB", "id": "Q8C863", "url": "https://www.uniprot.org/uniprotkb/Q8C863" }, { "database": "PubMed", "id": "16446428", "url": "https://pubmed.ncbi.nlm.nih.gov/16446428" } ], "uniprot_canonical_ac": "Q8C863-1" }, { "start_pos": 222, "end_pos": 222, "sequence_org": "T", "sequence_mut": "A", "comment": "No loss of MAPK8-mediated phosphorylation. Greatly reduced MAPK8-mediated phosphorylation; when associated with A-199 or A-232. 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Almost complete inactivation of ligase activity; when associated with A-199. Greatly reduced MAPK8-mediated phosphorylation; when associated with A-199 or A-222. 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"https://www.uniprot.org/uniprotkb/Q8C863" }, { "database": "iPTMnet", "id": "Q8C863", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8C863" }, { "database": "PubMed", "id": "32513985", "url": "https://pubmed.ncbi.nlm.nih.gov/32513985" }, { "database": "PubMed", "id": "16446428", "url": "https://pubmed.ncbi.nlm.nih.gov/16446428" } ], "site_lbl": "Thr222", "uniprot_canonical_ac": "Q8C863-1" }, { "start_pos": 232, "end_pos": 232, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MAPK8", "evidence": [ { "database": "UniProtKB", "id": "Q8C863", "url": "https://www.uniprot.org/uniprotkb/Q8C863" }, { "database": "iPTMnet", "id": "Q8C863", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8C863" }, { "database": "PubMed", "id": "32513985", "url": "https://pubmed.ncbi.nlm.nih.gov/32513985" }, { "database": "PubMed", "id": "16446428", "url": "https://pubmed.ncbi.nlm.nih.gov/16446428" } ], "site_lbl": "Ser232", "uniprot_canonical_ac": "Q8C863-1" }, { "start_pos": 240, "end_pos": 240, "kinase_uniprot_canonical_ac": "P45983-1", "kinase_gene_name": "MAPK8", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q96J02", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96J02" }, { "database": "PubMed", "id": "16446428", "url": "https://pubmed.ncbi.nlm.nih.gov/16446428" } ], "site_lbl": "Ser240", "uniprot_canonical_ac": "Q96J02-1" }, { "start_pos": 263, "end_pos": 263, "kinase_uniprot_canonical_ac": "P45983-1", "kinase_gene_name": "MAPK8", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q96J02", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96J02" }, { "database": "PubMed", "id": "16446428", "url": "https://pubmed.ncbi.nlm.nih.gov/16446428" } ], "site_lbl": "Thr263", "uniprot_canonical_ac": "Q96J02-1" }, { "start_pos": 273, "end_pos": 273, "kinase_uniprot_canonical_ac": "P45983-1", "kinase_gene_name": "MAPK8", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q96J02", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96J02" }, { "database": "PubMed", "id": "16446428", "url": "https://pubmed.ncbi.nlm.nih.gov/16446428" } ], "site_lbl": "Ser273", "uniprot_canonical_ac": "Q96J02-1" } ], "record_id": "pubmed.16446428", "abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ndfip1 protein promotes the function of itch ubiquitin ligase to prevent T cell activation and T helper 2 cell-mediated inflammation.", "journal": "Immunity", "date": "2006", "authors": "Oliver PM, Cao X, Worthen GS, Shi P, Briones N, MacLeod M, White J, Kirby P, Kappler J, Marrack P, Yang B", "reference": { "type": "PubMed", "id": "17137798", "url": "https://pubmed.ncbi.nlm.nih.gov/17137798" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8C863-1", "protein_name": "E3 ubiquitin-protein ligase Itchy", "gene_name": "Itch", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R0W6-1", "protein_name": "NEDD4 family-interacting protein 1", "gene_name": "Ndfip1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8C863", "url": "https://www.uniprot.org/uniprotkb/Q8C863" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17137798", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 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"NMR structural studies of the ItchWW3 domain reveal that phosphorylation at T30 inhibits the interaction with PPxY-containing ligands.", "journal": "Structure", "date": "2007", "authors": "Morales B, Ramirez-Espain X, Shaw AZ, Martin-Malpartida P, Yraola F, Sanchez-Tillo E, Farrera C, Celada A, Royo M, Macias MJ", "reference": { "type": "PubMed", "id": "17437719", "url": "https://pubmed.ncbi.nlm.nih.gov/17437719" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8C863-1", "protein_name": "E3 ubiquitin-protein ligase Itchy", "gene_name": "Itch", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96J02-1", "protein_name": "E3 ubiquitin-protein ligase Itchy homolog", "gene_name": "ITCH", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8C863", "url": "https://www.uniprot.org/uniprotkb/Q8C863" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": 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Natl. Acad. Sci. U.S.A.", "date": "2007", "authors": "Oberst A, Malatesta M, Aqeilan RI, Rossi M, Salomoni P, Murillas R, Sharma P, Kuehn MR, Oren M, Croce CM, Bernassola F, Melino G", "reference": { "type": "PubMed", "id": "17592138", "url": "https://pubmed.ncbi.nlm.nih.gov/17592138" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8C863-1", "protein_name": "E3 ubiquitin-protein ligase Itchy", "gene_name": "Itch", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6A037-1", "protein_name": "NEDD4-binding protein 1", "gene_name": "N4bp1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8C863", "url": "https://www.uniprot.org/uniprotkb/Q8C863" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17592138", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The ubiquitin ligase Itch mediates the antiapoptotic activity of epidermal growth factor by promoting the ubiquitylation and degradation of the truncated C-terminal portion of Bid.", "journal": "The FEBS journal", "date": "2010", "authors": "Azakir BA, Desrochers G, Angers A", "reference": { "type": "PubMed", "id": "20392206", "url": "https://pubmed.ncbi.nlm.nih.gov/20392206" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8C863-1", "protein_name": "E3 ubiquitin-protein ligase Itchy", "gene_name": "Itch", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70444-1", "protein_name": "BH3-interacting domain death agonist", "gene_name": "Bid", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P55957-1", "protein_name": "BH3-interacting domain death agonist", "gene_name": "BID", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J02-1", "protein_name": "E3 ubiquitin-protein ligase Itchy homolog", "gene_name": "ITCH", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8C863", "url": "https://www.uniprot.org/uniprotkb/Q8C863" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.20392206", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphatidylinositol 4-kinase IIalpha function at endosomes is regulated by the ubiquitin ligase Itch.", "journal": "EMBO Rep.", "date": "2012", "authors": "Mossinger J, Wieffer M, Krause E, Freund C, Gerth F, Krauss M, Haucke V", "reference": { "type": "PubMed", "id": "23146885", "url": 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