[ { "title": "Plexin B regulates Rho through the guanine nucleotide exchange factors leukemia-associated Rho GEF (LARG) and PDZ-RhoGEF.", "journal": "J. Biol. Chem.", "date": "2002", "authors": "Perrot V, Vazquez-Prado J, Gutkind JS", "reference": { "type": "PubMed", "id": "12183458", "url": "https://pubmed.ncbi.nlm.nih.gov/12183458" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15085-1", "protein_name": "Rho guanine nucleotide exchange factor 11", "gene_name": "ARHGEF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN5-1", "protein_name": "Rho guanine nucleotide exchange factor 12", "gene_name": "ARHGEF12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15031-1", "protein_name": "Plexin-B2", "gene_name": "PLXNB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15085", "url": "https://www.uniprot.org/uniprotkb/O15085" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12183458", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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"journal": "FEBS Lett.", "date": "2002", "authors": "Driessens Mariette H E, Olivo Cristina, Nagata Koh-ichi, Inagaki Masaki, Collard John G", "reference": { "type": "PubMed", "id": "12372594", "url": "https://pubmed.ncbi.nlm.nih.gov/12372594" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O15085-1", "protein_name": "Rho guanine nucleotide exchange factor 11", "gene_name": "ARHGEF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN5-1", "protein_name": "Rho guanine nucleotide exchange factor 12", "gene_name": "ARHGEF12", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O15085", "url": "https://www.uniprot.org/uniprotkb/O15085" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12372594", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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A novel keratinocyte annexin-like molecule binding acetylcholine.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Nguyen VT, Ndoye A, Grando SA", "reference": { "type": "PubMed", "id": "10899159", "url": "https://pubmed.ncbi.nlm.nih.gov/10899159" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O76027-1", "protein_name": "Annexin A9", "gene_name": "ANXA9", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O76027", "url": "https://www.uniprot.org/uniprotkb/O76027" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10899159", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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No effect on activity with small, synthetic substrate.", "evidence": [ { "database": "UniProtKB", "id": "P28039", "url": "https://www.uniprot.org/uniprotkb/P28039" }, { "database": "PubMed", "id": "29343645", "url": "https://pubmed.ncbi.nlm.nih.gov/29343645" } ], "uniprot_canonical_ac": "P28039-1" }, { "start_pos": 379, "end_pos": 379, "sequence_org": "K", "sequence_mut": "E", "comment": "No effect on enzyme activity; when associated with E-345.", "evidence": [ { "database": "UniProtKB", "id": "P28039", "url": "https://www.uniprot.org/uniprotkb/P28039" }, { "database": "PubMed", "id": "29343645", "url": "https://pubmed.ncbi.nlm.nih.gov/29343645" } ], "uniprot_canonical_ac": "P28039-1" }, { "start_pos": 419, "end_pos": 419, "sequence_org": "P", "sequence_mut": "M", "comment": "Loss of enzyme activity with lipopolysaccharide, due to steric hindrance. No effect on activity with small, synthetic substrate.", "evidence": [ { "database": "UniProtKB", "id": "P28039", "url": "https://www.uniprot.org/uniprotkb/P28039" }, { "database": "PubMed", "id": "29343645", "url": "https://pubmed.ncbi.nlm.nih.gov/29343645" } ], "uniprot_canonical_ac": "P28039-1" }, { "start_pos": 262, "end_pos": 262, "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "O35298", "url": "https://www.uniprot.org/uniprotkb/O35298" }, { "database": "PubMed", "id": "29343645", "url": "https://pubmed.ncbi.nlm.nih.gov/29343645" } ], "uniprot_canonical_ac": "O35298-1" } ], "record_id": "pubmed.29343645", "abstract": "", "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Acyloxyacyl Hydrolase Protects against Kidney Injury via Inhibition of Tubular CD74-Macrophage Crosstalk.", "journal": "International journal of biological sciences", "date": "2024", "authors": "Wu Zhenkai, Deng Bo, Shen Yuqi, Li Xuezhu, Li Jiaolun, Li Yan, Ma Shuai, Pan Yu, Ding Feng", "reference": { "type": "PubMed", "id": "38904010", "url": "https://pubmed.ncbi.nlm.nih.gov/38904010" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28039-1", "protein_name": "Acyloxyacyl hydrolase", "gene_name": "AOAH", "tax_name": "Human" }, { "uniprot_canonical_ac": "O35298-1", "protein_name": "Acyloxyacyl hydrolase", "gene_name": "Aoah", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P28039", "url": "https://www.uniprot.org/uniprotkb/P28039" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38904010", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A saposin-like domain influences the intracellular localization, stability, and catalytic activity of human acyloxyacyl hydrolase.", "journal": "The Journal of biological chemistry", "date": "1994", "authors": "Staab JF, Ginkel DL, Rosenberg GB, Munford RS", "reference": { "type": "PubMed", "id": "8089145", "url": "https://pubmed.ncbi.nlm.nih.gov/8089145" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P28039-1", "protein_name": "Acyloxyacyl hydrolase", "gene_name": "AOAH", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P28039", "url": "https://www.uniprot.org/uniprotkb/P28039" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5W7C&bu=0&command=select+.B:59;+center+selection;+zoom+selection" }, "start_pos": 59, "start_aa": "Asn", "end_pos": 59, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn59", "evidence": [ { "id": "P28039", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P28039#ptm_processing" }, { "id": "5W78", "database": "PDB", "url": "https://www.rcsb.org/sequence/5W78" }, { "id": "8089145", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8089145" }, { "id": "29343645", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29343645" }, { "id": "5W7C", "database": "PDB", "url": "https://www.rcsb.org/structure/5W7C" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P28039-1" } ], "mutagenesis": [ { "start_pos": 263, "end_pos": 263, "sequence_org": "S", "sequence_mut": "L", "comment": "Nearly abolishes catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "P28039", "url": "https://www.uniprot.org/uniprotkb/P28039" }, { "database": "PubMed", "id": "8089145", "url": "https://pubmed.ncbi.nlm.nih.gov/8089145" } ], "uniprot_canonical_ac": "P28039-1" }, { "start_pos": 61, "end_pos": 61, "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of glycosylation. No effect on enzyme activity or localization to cytoplasmic vesicles.", "evidence": [ { "database": "UniProtKB", "id": "P28039", "url": "https://www.uniprot.org/uniprotkb/P28039" }, { "database": "PubMed", "id": "8089145", "url": "https://pubmed.ncbi.nlm.nih.gov/8089145" } ], "uniprot_canonical_ac": "P28039-1" } ], "record_id": "pubmed.8089145", "abstract": "", "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Polarized trafficking and surface expression of the AQP4 water channel are coordinated by serial and regulated interactions with different clathrin-adaptor complexes.", "journal": "The EMBO 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"kinase_uniprot_canonical_ac": "P68400-1", "kinase_gene_name": "CSNK2A1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P55087", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55087" }, { "database": "PubMed", "id": "11742978", "url": "https://pubmed.ncbi.nlm.nih.gov/11742978" } ], "site_lbl": "Ser285", "uniprot_canonical_ac": "P55087-1" }, { "start_pos": 316, "end_pos": 316, "kinase_uniprot_canonical_ac": "P19784-1", "kinase_gene_name": "CSNK2A2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P55087", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P55087" }, { "database": "PubMed", "id": "11742978", "url": "https://pubmed.ncbi.nlm.nih.gov/11742978" } ], "site_lbl": "Ser316", "uniprot_canonical_ac": "P55087-1" }, { "start_pos": 316, "end_pos": 316, "kinase_uniprot_canonical_ac": "P68400-1", "kinase_gene_name": "CSNK2A1", "residue": "Ser", "comment": "", "evidence": [ { "database": 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Med.", "date": "2018", "authors": "Rosito Stefania, Nicchia Grazia Paola, Palazzo Claudia, Lia Anna, Buccoliero Cinzia, Pisani Francesco, Svelto Maria, Trojano Maria, Frigeri Antonio", "reference": { "type": "PubMed", "id": "29055082", "url": "https://pubmed.ncbi.nlm.nih.gov/29055082" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55087-1", "protein_name": "Aquaporin-4", "gene_name": "AQP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55088-1", "protein_name": "Aquaporin-4", "gene_name": "Aqp4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P47863-1", "protein_name": "Aquaporin-4", "gene_name": "Aqp4", "tax_name": "Rat" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55087", "url": "https://www.uniprot.org/uniprotkb/P55087" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.29055082", "abstract": "", 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"https://www.uniprot.org/uniprotkb/Q03989" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15941852", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "AT-rich-interactive domain-containing protein 5A functions as a negative regulator of retinoic acid receptor-related orphan nuclear receptor gammat-induced Th17 cell differentiation.", "journal": "Arthritis & rheumatology (Hoboken, N.J.)", "date": "2014", "authors": "Saito Y, Kagami S, Sanayama Y, Ikeda K, Suto A, Kashiwakuma D, Furuta S, Iwamoto I, Nonaka K, Ohara O, Nakajima H", "reference": { "type": "PubMed", "id": "24782182", "url": "https://pubmed.ncbi.nlm.nih.gov/24782182" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03989-1", "protein_name": "AT-rich interactive domain-containing protein 5A", "gene_name": "ARID5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3U108-1", "protein_name": "AT-rich interactive domain-containing protein 5A", "gene_name": "Arid5a", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q03989", "url": "https://www.uniprot.org/uniprotkb/Q03989" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24782182", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differentially regulated gene expression in quiescence versus senescence and identification of ARID5A as a quiescence associated marker.", "journal": "Journal of cellular physiology", "date": "2018", "authors": "Anwar T, Sen B, Aggarwal S, Nath R, Pathak N, Katoch A, Aiyaz M, Trehanpati N, Khosla S, Ramakrishna G", "reference": { "type": "PubMed", "id": "29044508", "url": "https://pubmed.ncbi.nlm.nih.gov/29044508" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03989-1", "protein_name": "AT-rich interactive domain-containing protein 5A", "gene_name": "ARID5A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q03989", "url": "https://www.uniprot.org/uniprotkb/Q03989" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.29044508", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Noncanonical STAT1 phosphorylation expands its transcriptional activity into promoting LPS-induced IL-6 and IL-12p40 production.", "journal": "Science signaling", "date": "2020-03-24", "authors": "Metwally Hozaifa, Tanaka Toshio, Li Songling, Parajuli Gyanu, Kang Sujin, Hanieh Hamza, Hashimoto Shigeru, Chalise Jaya P, Gemechu Yohannes, Standley Daron M, Kishimoto Tadamitsu", "reference": { "type": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03989-1", "protein_name": "AT-rich interactive domain-containing protein 5A", "gene_name": "ARID5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14920-1", "protein_name": "Inhibitor of nuclear factor kappa-B kinase subunit beta", "gene_name": "IKBKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42224-1", "protein_name": "Signal transducer and activator of transcription 1-alpha/beta", "gene_name": "STAT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q03989", "url": "https://www.uniprot.org/uniprotkb/Q03989" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 44, "end_pos": 44, "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of kinase activity and no effect on binding to NIK. Does not phosphorylate STAT1 at 'Thr-749'.", "evidence": [ { "database": "UniProtKB", "id": "O14920", "url": "https://www.uniprot.org/uniprotkb/O14920" }, { "database": "PubMed", "id": "9346484", "url": "https://pubmed.ncbi.nlm.nih.gov/9346484" }, { "database": "PubMed", "id": "9346485", "url": "https://pubmed.ncbi.nlm.nih.gov/9346485" }, { "database": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" } ], "uniprot_canonical_ac": "O14920-1" }, { "start_pos": 701, "end_pos": 701, "sequence_org": "Y", "sequence_mut": "A", "comment": "No effect on transcriptional activation of ARID5A.", "evidence": [ { "database": "UniProtKB", "id": "P42224", "url": "https://www.uniprot.org/uniprotkb/P42224" }, { "database": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" } ], "uniprot_canonical_ac": "P42224-1" }, { "start_pos": 704, "end_pos": 704, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on transcriptional activation of ARID5A.", "evidence": [ { "database": "UniProtKB", "id": "P42224", "url": "https://www.uniprot.org/uniprotkb/P42224" }, { "database": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" } ], "uniprot_canonical_ac": "P42224-1" }, { "start_pos": 708, "end_pos": 708, "sequence_org": "S", "sequence_mut": "A", "comment": "Phosphorylated at Y-701 upon IFNB induction. No effect on transcriptional activation of ARID5A.", "evidence": [ { "database": "UniProtKB", "id": "P42224", "url": "https://www.uniprot.org/uniprotkb/P42224" }, { "database": "PubMed", "id": "22065572", "url": "https://pubmed.ncbi.nlm.nih.gov/22065572" }, { "database": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" } ], "uniprot_canonical_ac": "P42224-1" }, { "start_pos": 710, "end_pos": 710, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on transcriptional activation of ARID5A.", "evidence": [ { "database": "UniProtKB", "id": "P42224", "url": "https://www.uniprot.org/uniprotkb/P42224" }, { "database": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" } ], "uniprot_canonical_ac": "P42224-1" }, { "start_pos": 715, "end_pos": 715, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on transcriptional activation of ARID5A.", "evidence": [ { "database": "UniProtKB", "id": "P42224", "url": "https://www.uniprot.org/uniprotkb/P42224" }, { "database": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" } ], "uniprot_canonical_ac": "P42224-1" }, { "start_pos": 719, "end_pos": 719, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on transcriptional activation of ARID5A.", "evidence": [ { "database": "UniProtKB", "id": "P42224", "url": "https://www.uniprot.org/uniprotkb/P42224" }, { "database": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" } ], "uniprot_canonical_ac": "P42224-1" }, { "start_pos": 720, "end_pos": 720, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on transcriptional activation of ARID5A.", "evidence": [ { "database": "UniProtKB", "id": "P42224", "url": "https://www.uniprot.org/uniprotkb/P42224" }, { "database": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" } ], "uniprot_canonical_ac": "P42224-1" }, { "start_pos": 727, "end_pos": 727, "sequence_org": "S", "sequence_mut": "A", "comment": "Decreased transcriptional activation. No effect on basal sumoylation. No enhancement of sumoylation on MAPK stimulation. No PRKCD-induced apoptosis. Upon IFNB induction, phosphorylated at Y-701 but not at S-708. No effect on transcriptional activation of ARID5A.", "evidence": [ { "database": "UniProtKB", "id": "P42224", "url": "https://www.uniprot.org/uniprotkb/P42224" }, { "database": "PubMed", "id": "15322115", "url": "https://pubmed.ncbi.nlm.nih.gov/15322115" }, { "database": "PubMed", "id": "22065572", "url": "https://pubmed.ncbi.nlm.nih.gov/22065572" }, { "database": "PubMed", "id": "17897103", "url": "https://pubmed.ncbi.nlm.nih.gov/17897103" }, { "database": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" } ], "uniprot_canonical_ac": "P42224-1" }, { "start_pos": 735, "end_pos": 735, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on transcriptional activation of ARID5A.", "evidence": [ { "database": "UniProtKB", "id": "P42224", "url": "https://www.uniprot.org/uniprotkb/P42224" }, { "database": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" } ], "uniprot_canonical_ac": "P42224-1" }, { "start_pos": 740, "end_pos": 740, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on transcriptional activation of ARID5A.", "evidence": [ { "database": "UniProtKB", "id": "P42224", "url": "https://www.uniprot.org/uniprotkb/P42224" }, { "database": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" } ], "uniprot_canonical_ac": "P42224-1" }, { "start_pos": 745, "end_pos": 745, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on transcriptional activation of ARID5A.", "evidence": [ { "database": "UniProtKB", "id": "P42224", "url": "https://www.uniprot.org/uniprotkb/P42224" }, { "database": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" } ], "uniprot_canonical_ac": "P42224-1" }, { "start_pos": 749, "end_pos": 749, "sequence_org": "T", "sequence_mut": "A", "comment": "Reduced transcriptional activation of ARID5A and IL12B. No effect on nuclear translocation. Abolishes IKKB-mediated phosphorylation at this position.", "evidence": [ { "database": "UniProtKB", "id": "P42224", "url": "https://www.uniprot.org/uniprotkb/P42224" }, { "database": "PubMed", "id": "32209697", "url": "https://pubmed.ncbi.nlm.nih.gov/32209697" }, { "database": "PubMed", "id": "38621137", "url": "https://pubmed.ncbi.nlm.nih.gov/38621137" } ], "uniprot_canonical_ac": "P42224-1" }, { "start_pos": 749, "end_pos": 749, "sequence_org": "T", "sequence_mut": "E", "comment": "Phosphomimetic mutant; no effect on transcriptional activation of ARID5A or IL12B. 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Biol.", "date": "1999", "authors": "T\u00fcmer Z, M\u00f8ller L B, Horn N", "reference": { "type": "PubMed", "id": "10079817", "url": "https://pubmed.ncbi.nlm.nih.gov/10079817" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q04656-1", "protein_name": "Copper-transporting ATPase 1", "gene_name": "ATP7A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q04656", "url": "https://www.uniprot.org/uniprotkb/Q04656" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10079817", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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J. Hum. 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A single PDZ domain protein interacts with the Menkes copper ATPase, ATP7A. A new protein implicated in copper homeostasis.", "journal": "J. Biol. Chem.", "date": "2005", "authors": "Stephenson Sarah E M, Dubach Daphne, Lim Chris M, Mercer Julian F B, La Fontaine Sharon", "reference": { "type": "PubMed", "id": "16051599", "url": "https://pubmed.ncbi.nlm.nih.gov/16051599" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q04656-1", "protein_name": "Copper-transporting ATPase 1", "gene_name": "ATP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5EBL8-1", "protein_name": "PDZ domain-containing protein 11", "gene_name": "PDZD11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q04656", "url": "https://www.uniprot.org/uniprotkb/Q04656" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16051599", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]