[ { "title": "Mutations in host cell factor 1 separate its role in cell proliferation from recruitment of VP16 and LZIP.", "journal": "Molecular and cellular biology", "date": "2000", "authors": "Mahajan SS, Wilson AC", "reference": { "type": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51610-1", "protein_name": "Host cell factor 1", "gene_name": "HCFC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43889-2", "protein_name": "Cyclic AMP-responsive element-binding protein 3", "gene_name": "CREB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14859-1", "protein_name": "POU domain, class 2, transcription factor 1", "gene_name": "POU2F1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 105, "end_pos": 105, "sequence_org": "K", "sequence_mut": "D", "comment": "Minor reduction in VIC formation and association with VP16 and CREB3. Able to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 134, "end_pos": 134, "sequence_org": "P", "sequence_mut": "S", "comment": "Eliminates VIC formation and association with VP16. Weak association with POU2F1. Unable to associate with CREBZF and BAP1. Unable to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "19815555", "url": "https://pubmed.ncbi.nlm.nih.gov/19815555" }, { "database": "PubMed", "id": "9271389", "url": "https://pubmed.ncbi.nlm.nih.gov/9271389" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 137, "end_pos": 137, "sequence_org": "R", "sequence_mut": "D", "comment": "Eliminates VIC formation. Unable to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 197, "end_pos": 197, "sequence_org": "P", "sequence_mut": "S", "comment": "Eliminates VIC formation and association with VP16. Unable to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 200, "end_pos": 200, "sequence_org": "R", "sequence_mut": "D", "comment": "Eliminates VIC formation. Unable to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 228, "end_pos": 228, "sequence_org": "R", "sequence_mut": "D", "comment": "Eliminates VIC formation and association with VP16. Unable to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 252, "end_pos": 252, "sequence_org": "P", "sequence_mut": "S", "comment": "Minor reduction in VIC formation, but retains association with VP16. Unable to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 255, "end_pos": 255, "sequence_org": "R", "sequence_mut": "D", "comment": "Eliminates VIC formation. Unable to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 289, "end_pos": 291, "sequence_org": "EWK", "sequence_mut": "AAA", "comment": "Minor reduction in VIC formation and association with VP16. Weak association with POU2F1. Severely reduces association with CREB3. Able to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 30, "end_pos": 30, "sequence_org": "P", "sequence_mut": "S", "comment": "Severely reduces VP16-induced complex (VIC) formation, but retains association with VP16. Unable to rescue proliferation in temperature-sensitive arrested cells. Abolishes interaction with CREB3.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 319, "end_pos": 319, "sequence_org": "P", "sequence_mut": "S", "comment": "Eliminates VIC formation and association with VP16. Unable to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 322, "end_pos": 322, "sequence_org": "R", "sequence_mut": "D", "comment": "Eliminates VIC formation. Unable to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 338, "end_pos": 338, "sequence_org": "S", "sequence_mut": "A", "comment": "Moderately reduces association with VP16 and CREB3. Able to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 344, "end_pos": 345, "sequence_org": "RK", "sequence_mut": "AA", "comment": "Eliminates VIC formation, but only minor reduction in association with VP16. Unable to associate with POU2F1, but only minor reduction in association with CREB3. Able to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 79, "end_pos": 79, "sequence_org": "P", "sequence_mut": "S", "comment": "Severely reduces VIC formation, but retains association with VP16. Severely reduces association with CREB3. Unable to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" }, { "start_pos": 82, "end_pos": 82, "sequence_org": "C", "sequence_mut": "D", "comment": "Moderately reduces VIC formation and association with VP16 and CREB3. Unable to rescue proliferation in temperature-sensitive arrested cells.", "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" }, { "database": "PubMed", "id": "10629049", "url": "https://pubmed.ncbi.nlm.nih.gov/10629049" } ], "uniprot_canonical_ac": "P51610-1" } ], "record_id": "pubmed.10629049", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The novel coactivator C1 (HCF) coordinates multiprotein enhancer formation and mediates transcription activation by GABP.", "journal": "The EMBO journal", "date": "2000", "authors": "Vogel JL, Kristie TM", "reference": { "type": "PubMed", "id": "10675337", "url": "https://pubmed.ncbi.nlm.nih.gov/10675337" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51610-1", "protein_name": "Host cell factor 1", "gene_name": "HCFC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06547-1", "protein_name": "GA-binding protein subunit beta-1", "gene_name": "GABPB1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 264, "end_pos": 265, "sequence_org": "VV", "sequence_mut": "AA", "comment": "Minor effect upon interaction with HCFC1 and transcriptional activation. 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Cell. Biochem.", "date": "2000", "authors": "Gunther M, Laithier M, Brison O", "reference": { "type": "PubMed", "id": "10976766", "url": "https://pubmed.ncbi.nlm.nih.gov/10976766" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51610-1", "protein_name": "Host cell factor 1", "gene_name": "HCFC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV58-1", "protein_name": "E3 ubiquitin-protein ligase RNF19A", "gene_name": "RNF19A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VMQ6-1", "protein_name": "Activating transcription factor 7-interacting protein 1", "gene_name": "ATF7IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P0N0-1", "protein_name": "Mis18-binding protein 1", "gene_name": "MIS18BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXK0-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "PHC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3K3-1", "protein_name": "Pogo transposable element with ZNF domain", "gene_name": "POGZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRR4-1", "protein_name": "Ribonuclease 3", "gene_name": "DROSHA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08047-1", "protein_name": "Transcription factor Sp1", "gene_name": "SP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10976766", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "N-terminal transcriptional activation domain of LZIP comprises two LxxLL motifs and the host cell factor-1 binding motif.", "journal": "Proc. 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Chem.", "date": "1995", "authors": "Kristie T M, Pomerantz J L, Twomey T C, Parent S A, Sharp P A", "reference": { "type": "PubMed", "id": "7876203", "url": "https://pubmed.ncbi.nlm.nih.gov/7876203" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51610-1", "protein_name": "Host cell factor 1", "gene_name": "HCFC1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51610", "url": "https://www.uniprot.org/uniprotkb/P51610" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7876203", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Nuclear export of NF-ATc enhanced by glycogen synthase kinase-3.", "journal": "Science (New York, N.Y.)", "date": "1997", "authors": "Beals CR, Sheridan CM, Turck CW, Gardner P, Crabtree GR", "reference": { "type": "PubMed", "id": "9072970", "url": "https://pubmed.ncbi.nlm.nih.gov/9072970" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O95644-1", "protein_name": "Nuclear factor of activated T-cells, cytoplasmic 1", "gene_name": "NFATC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49841-1", "protein_name": "Glycogen synthase kinase-3 beta", "gene_name": "GSK3B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O95644", "url": "https://www.uniprot.org/uniprotkb/O95644" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9072970", "abstract": "", 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Cell. 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url" ] } ] }, { "title": "Vector-capping: a simple method for preparing a high-quality full-length cDNA library.", "journal": "DNA Res.", "date": "2005", "authors": "Kato Seishi, Ohtoko Kuniyo, Ohtake Hideki, Kimura Tomoko", "reference": { "type": "PubMed", "id": "16106752", "url": "https://pubmed.ncbi.nlm.nih.gov/16106752" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35579-1", "protein_name": "Myosin-9", "gene_name": "MYH9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75369-1", "protein_name": "Filamin-B", "gene_name": "FLNB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P02751", "url": "https://www.uniprot.org/uniprotkb/P02751" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16106752", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"https://pubmed.ncbi.nlm.nih.gov/16322219" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P02751", "url": "https://www.uniprot.org/uniprotkb/P02751" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16322219", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The solution and crystal structures of a module pair from the Staphylococcus aureus-binding site of human fibronectin -- a tale with a twist.", "journal": "J. Mol. Biol.", "date": "2007", "authors": "Rudi\u00f1o-Pi\u00f1era Enrique, Ravelli Raimond B G, Sheldrick George M, Nanao Max H, Korostelev Vladimir V, Werner Joern M, Schwarz-Linek Ulrich, Potts Jennifer R, Garman Elspeth F", "reference": { "type": "PubMed", "id": "17368672", "url": "https://pubmed.ncbi.nlm.nih.gov/17368672" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P02751", "url": "https://www.uniprot.org/uniprotkb/P02751" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17368672", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interdomain association in fibronectin: insight into cryptic sites and fibrillogenesis.", "journal": "EMBO J.", "date": "2007", "authors": "Vakonakis Ioannis, Staunton David, Rooney Luke M, Campbell Iain D", "reference": { "type": "PubMed", "id": "17464288", "url": "https://pubmed.ncbi.nlm.nih.gov/17464288" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", 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[] } ] }, { "title": "Identification of HLA-DR-bound peptides presented by human bronchoalveolar lavage cells in sarcoidosis.", "journal": "The Journal of clinical investigation", "date": "2007-11", "authors": "Wahlstr\u00f6m Jan, Dengjel J\u00f6rn, Persson Bengt, Duyar H\u00fcseyin, Rammensee Hans-Georg, Stevanovi\u0107 Stefan, Eklund Anders, Weissert Robert, Grunewald Johan", "reference": { "type": "PubMed", "id": "17975675", "url": "https://pubmed.ncbi.nlm.nih.gov/17975675" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07954-1", "protein_name": "Prolow-density lipoprotein receptor-related protein 1", "gene_name": "LRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10619-1", "protein_name": "Lysosomal protective protein", "gene_name": "CTSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24539-1", "protein_name": "ATP synthase peripheral stalk subunit b, mitochondrial", "gene_name": "ATP5PB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15392-1", "protein_name": "Delta(24)-sterol reductase", "gene_name": "DHCR24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55084-1", "protein_name": "Trifunctional enzyme subunit beta, mitochondrial", "gene_name": "HADHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56385-1", "protein_name": "ATP synthase F(0) complex subunit e, mitochondrial", "gene_name": "ATP5ME", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04003-1", "protein_name": "C4b-binding protein alpha chain", "gene_name": "C4BPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01031-1", "protein_name": "Complement C5", "gene_name": "C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04233-1", "protein_name": "HLA class II histocompatibility antigen gamma chain", "gene_name": "CD74", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16236-1", "protein_name": "Nuclear factor erythroid 2-related factor 2", "gene_name": "NFE2L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O96009-1", "protein_name": "Napsin-A", "gene_name": "NAPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01833-1", "protein_name": "Polymeric immunoglobulin receptor", "gene_name": "PIGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05186-1", "protein_name": "Alkaline phosphatase, tissue-nonspecific isozyme", "gene_name": "ALPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15090-1", "protein_name": "Fatty acid-binding protein, adipocyte", "gene_name": "FABP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08670-1", "protein_name": "Vimentin", "gene_name": "VIM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27824-1", "protein_name": "Calnexin", "gene_name": "CANX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02768-1", "protein_name": "Albumin", "gene_name": "ALB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01042-1", "protein_name": "Kininogen-1", "gene_name": "KNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02042-1", "protein_name": "Hemoglobin subunit delta", "gene_name": "HBD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21333-1", "protein_name": "Filamin-A", "gene_name": "FLNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35754-1", "protein_name": "Glutaredoxin-1", "gene_name": "GLRX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00560-1", "protein_name": "Syntenin-1", "gene_name": "SDCBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01009-1", "protein_name": "Alpha-1-antitrypsin", "gene_name": "SERPINA1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P02751", "url": "https://www.uniprot.org/uniprotkb/P02751" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17975675", "abstract": "", "glycosylation": [], "mutagenesis": [], 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