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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Early cell fate decisions of human embryonic stem cells and mouse epiblast stem cells are controlled by the same signalling pathways.", "journal": "PloS one", "date": "2009-06-30", "authors": "Vallier Ludovic, Touboul Thomas, Chng Zhenzhi, Brimpari Minodora, Hannan Nicholas, Millan Enrique, Smithers Lucy E, Trotter Matthew, Rugg-Gunn Peter, Weber Anne, Pedersen Roger A", "reference": { "type": "PubMed", "id": "19564924", "url": "https://pubmed.ncbi.nlm.nih.gov/19564924" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13485-1", "protein_name": "SMAD family member 4", "gene_name": "SMAD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15796-1", "protein_name": "SMAD family member 2", "gene_name": "SMAD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43694-1", "protein_name": "Transcription factor GATA-4", "gene_name": "GATA4", "tax_name": "Human" 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"field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"authors": "D'Inzeo S, Nicolussi A, Donini CF, Zani M, Mancini P, Nardi F, Coppa A", "reference": { "type": "PubMed", "id": "22109972", "url": "https://pubmed.ncbi.nlm.nih.gov/22109972" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13485-1", "protein_name": "SMAD family member 4", "gene_name": "SMAD4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13485", "url": "https://www.uniprot.org/uniprotkb/Q13485" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22109972", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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associated with multiple endocrine neoplasia type 1 (MEN1).", "journal": "The Journal of biological chemistry", "date": "2012", "authors": "Canaff L, Vanbellinghen JF, Kaji H, Goltzman D, Hendy GN", "reference": { "type": "PubMed", "id": "22275377", "url": "https://pubmed.ncbi.nlm.nih.gov/22275377" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13485-1", "protein_name": "SMAD family member 4", "gene_name": "SMAD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15796-1", "protein_name": "SMAD family member 2", "gene_name": "SMAD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28482-1", "protein_name": "Mitogen-activated protein kinase 1", "gene_name": "MAPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17275-1", "protein_name": "Transcription factor JunB", "gene_name": "JUNB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13547-1", "protein_name": "Histone deacetylase 1", "gene_name": "HDAC1", "tax_name": "Human" }, { 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communications", "date": "2017", "authors": "Martin-Malpartida P, Batet M, Kaczmarska Z, Freier R, Gomes T, Aragon E, Zou Y, Wang Q, Xi Q, Ruiz L, Vea A, Marquez JA, Massague J, Macias MJ", "reference": { "type": "PubMed", "id": "29234012", "url": "https://pubmed.ncbi.nlm.nih.gov/29234012" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13485-1", "protein_name": "SMAD family member 4", "gene_name": "SMAD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15796-1", "protein_name": "SMAD family member 2", "gene_name": "SMAD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48431-1", "protein_name": "Transcription factor SOX-2", "gene_name": "SOX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM33", "gene_name": "TRIM33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36402-5", "protein_name": "Transcription factor 7", "gene_name": "TCF7", "tax_name": "Human" }, { 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GATA6 Cooperates with EOMES/SMAD2/3 to Deploy the Gene Regulatory Network Governing Human Definitive Endoderm and Pancreas Formation.", "journal": "Stem cell reports", "date": "2019-01-08", "authors": "Chia Crystal Y, Madrigal Pedro, Denil Simon L I J, Martinez Iker, Garcia-Bernardo Jose, El-Khairi Ranna, Chhatriwala Mariya, Shepherd Maggie H, Hattersley Andrew T, Dunn N Ray, Vallier Ludovic", "reference": { "type": "PubMed", "id": "30629940", "url": "https://pubmed.ncbi.nlm.nih.gov/30629940" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13485-1", "protein_name": "SMAD family member 4", "gene_name": "SMAD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15796-1", "protein_name": "SMAD family member 2", "gene_name": "SMAD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43694-1", "protein_name": "Transcription factor GATA-4", "gene_name": "GATA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQB0-1", "protein_name": "Transcription factor 7-like 2", "gene_name": "TCF7L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6I2-1", "protein_name": "Transcription factor SOX-17", "gene_name": "SOX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y261-1", "protein_name": "Hepatocyte nuclear factor 3-beta", "gene_name": "FOXA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92908-1", "protein_name": "Transcription factor GATA-6", "gene_name": "GATA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56915-1", "protein_name": "Homeobox protein goosecoid", "gene_name": "GSC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35222-1", "protein_name": "Catenin beta-1", "gene_name": "CTNNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84022-1", "protein_name": "SMAD family member 3", "gene_name": "SMAD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2W2-1", "protein_name": "Homeobox protein MIXL1", "gene_name": "MIXL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15178-1", "protein_name": "T-box transcription factor T", "gene_name": "TBXT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61073-1", "protein_name": "C-X-C chemokine receptor type 4", "gene_name": "CXCR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95936-1", "protein_name": "Eomesodermin homolog", "gene_name": "EOMES", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13485", "url": "https://www.uniprot.org/uniprotkb/Q13485" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.30629940", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ALK phosphorylates SMAD4 on tyrosine to disable TGF-beta tumour suppressor functions.", "journal": "Nature cell biology", "date": "2019", "authors": "Zhang Q, Xiao M, Gu S, Xu Y, Liu T, Li H, Yu Y, Qin L, Zhu Y, Chen F, Wang Y, Ding C, Wu H, Ji H, Chen Z, Zu Y, Malkoski S, Li Y, Liang T, Ji J, Qin J, Xu P, Zhao B, Shen L, Lin X, Feng XH", "reference": { "type": "PubMed", "id": "30664791", "url": "https://pubmed.ncbi.nlm.nih.gov/30664791" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13485-1", "protein_name": "SMAD family member 4", "gene_name": "SMAD4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13485", "url": "https://www.uniprot.org/uniprotkb/Q13485" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 95, "end_pos": 95, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q13485", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13485" }, { "database": "PubMed", "id": "30664791", "url": "https://pubmed.ncbi.nlm.nih.gov/30664791" } ], "site_lbl": "Tyr95", "uniprot_canonical_ac": "Q13485-1" } ], "record_id": "pubmed.30664791", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { 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"field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BRK phosphorylates SMAD4 for proteasomal degradation and inhibits tumor suppressor FRK to control SNAIL, SLUG, and metastatic potential.", "journal": "Science advances", "date": "2019", "authors": "Miah S, Banks CAS, Ogunbolude Y, Bagu ET, Berg JM, Saraf A, Tettey TT, Hattem G, Dayebgadoh G, Kempf CG, Sardiu M, Napper S, 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"glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "GATA6-AS1 Regulates GATA6 Expression to Modulate Human Endoderm Differentiation.", "journal": "Stem cell reports", "date": "2020-09-08", "authors": "Yang Jie, Lu Pei, Li Mao, Yan Chenchao, Zhang Tianzhe, Jiang Wei", "reference": { "type": "PubMed", "id": "32795420", "url": "https://pubmed.ncbi.nlm.nih.gov/32795420" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13485-1", "protein_name": "SMAD family member 4", "gene_name": "SMAD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15796-1", "protein_name": "SMAD family member 2", "gene_name": "SMAD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43694-1", "protein_name": "Transcription factor GATA-4", "gene_name": "GATA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQB0-1", "protein_name": "Transcription factor 7-like 2", "gene_name": "TCF7L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6I2-1", "protein_name": 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familial pancreatic carcinoma.", "journal": "Diagn. Mol. Pathol.", "date": "1997", "authors": "Moskaluk C A, Hruban R H, Schutte M, Lietman A S, Smyrk T, Fusaro L, Fusaro R, Lynch J, Yeo C J, Jackson C E, Lynch H T, Kern S E", "reference": { "type": "PubMed", "id": "9098646", "url": "https://pubmed.ncbi.nlm.nih.gov/9098646" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13485-1", "protein_name": "SMAD family member 4", "gene_name": "SMAD4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13485", "url": "https://www.uniprot.org/uniprotkb/Q13485" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9098646", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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organizer-specific homeobox gene goosecoid.", "journal": "The Journal of biological chemistry", "date": "1998", "authors": "Danilov V, Blum M, Schweickert A, Campione M, Steinbeisser H", "reference": { "type": "PubMed", "id": "9417125", "url": "https://pubmed.ncbi.nlm.nih.gov/9417125" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13485-1", "protein_name": "SMAD family member 4", "gene_name": "SMAD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15796-1", "protein_name": "SMAD family member 2", "gene_name": "SMAD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48431-1", "protein_name": "Transcription factor SOX-2", "gene_name": "SOX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02591-1", "protein_name": "Homeobox protein goosecoid", "gene_name": "Gsc", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UPN9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM33", "gene_name": "TRIM33", "tax_name": "Human" }, { 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[] } ] }, { "title": "Characterization of two polyubiquitin binding sites in the 26 S protease subunit 5a.", "journal": "J. Biol. Chem.", "date": "1998", "authors": "Young P, Deveraux Q, Beal R E, Pickart C M, Rechsteiner M", "reference": { "type": "PubMed", "id": "9488668", "url": "https://pubmed.ncbi.nlm.nih.gov/9488668" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55036-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 4", "gene_name": "PSMD4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55036", "url": "https://www.uniprot.org/uniprotkb/P55036" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9488668", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel oncoprotein RNF43 functions in an autocrine manner in colorectal cancer.", "journal": "Int. J. 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[] } ] }, { "title": "Deletion of SNX9 alleviates CD8 T cell exhaustion for effective cellular cancer immunotherapy.", "journal": "Nature communications", "date": "2023-02-02", "authors": "Trefny Marcel P, Kirchhammer Nicole, Auf der Maur Priska, Natoli Marina, Schmid Dominic, Germann Markus, Fernandez Rodriguez Laura, Herzig Petra, L\u00f6tscher Jonas, Akrami Maryam, Stinchcombe Jane C, Stanczak Michal A, Zingg Andreas, Buchi Melanie, Roux Julien, Marone Romina, Don Leyla, Lardinois Didier, Wiese Mark, Jeker Lukas T, Bentires-Alj Mohamed, Rossy J\u00e9r\u00e9mie, Thommen Daniela S, Griffiths Gillian M, L\u00e4ubli Heinz, Hess Christoph, Zippelius Alfred", "reference": { "type": "PubMed", "id": "36732507", "url": "https://pubmed.ncbi.nlm.nih.gov/36732507" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y5X1-1", "protein_name": "Sorting nexin-9", "gene_name": "SNX9", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, 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"The adaptor protein Tks5/Fish is required for podosome formation and function, and for the protease-driven invasion of cancer cells.", "journal": "Cancer cell", "date": "2005", "authors": "Seals DF, Azucena EF Jr, Pass I, Tesfay L, Gordon R, Woodrow M, Resau JH, Courtneidge SA", "reference": { "type": "PubMed", "id": "15710328", "url": "https://pubmed.ncbi.nlm.nih.gov/15710328" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5TCZ1-1", "protein_name": "SH3 and PX domain-containing protein 2A", "gene_name": "SH3PXD2A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5TCZ1", "url": "https://www.uniprot.org/uniprotkb/Q5TCZ1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15710328", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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J. Cell Biol.", "date": "2008", "authors": "Blouw Barbara, Seals Darren F, Pass Ian, Diaz Bego\u00f1a, Courtneidge Sara A", "reference": { "type": "PubMed", "id": "18417249", "url": "https://pubmed.ncbi.nlm.nih.gov/18417249" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5TCZ1-1", "protein_name": "SH3 and PX domain-containing protein 2A", "gene_name": "SH3PXD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O89032-1", "protein_name": "SH3 and PX domain-containing protein 2A", "gene_name": "Sh3pxd2a", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5TCZ1", "url": "https://www.uniprot.org/uniprotkb/Q5TCZ1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18417249", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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regulation of Rab40b-Tks5 complex during invadopodia formation and cancer cell invasion.", "journal": "Journal of cell science", "date": "2016", "authors": "Jacob A, Linklater E, Bayless BA, Lyons T, Prekeris R", "reference": { "type": "PubMed", "id": "27789576", "url": "https://pubmed.ncbi.nlm.nih.gov/27789576" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5TCZ1-1", "protein_name": "SH3 and PX domain-containing protein 2A", "gene_name": "SH3PXD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12829-1", "protein_name": "Ras-related protein Rab-40B", "gene_name": "RAB40B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5TCZ1", "url": "https://www.uniprot.org/uniprotkb/Q5TCZ1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 24, "end_pos": 24, "sequence_org": "Y", "sequence_mut": "A", 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K, Ohira M, Yashiro M", "reference": { "type": "PubMed", "id": "34255789", "url": "https://pubmed.ncbi.nlm.nih.gov/34255789" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5TCZ1-1", "protein_name": "SH3 and PX domain-containing protein 2A", "gene_name": "SH3PXD2A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5TCZ1", "url": "https://www.uniprot.org/uniprotkb/Q5TCZ1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34255789", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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[] } ] }, { "title": "A MAP1B-cortactin-Tks5 axis regulates TNBC invasion and tumorigenesis.", "journal": "The Journal of cell biology", "date": "2024-03-04", "authors": "Inoue Hiroki, Kanda Taku, Hayashi Gakuto, Munenaga Ryota, Yoshida Masayuki, Hasegawa Kana, Miyagawa Takuya, Kurumada Yukiya, Hasegawa Jumpei, Wada Tomoyuki, Horiuchi Motoi, Yoshimatsu Yasuhiro, Itoh Fumiko, Maemoto Yuki, Arasaki Kohei, Wakana Yuichi, Watabe Tetsuro, Matsushita Hiromichi, Harada Hironori, Tagaya Mitsuo", "reference": { "type": "PubMed", "id": "38353696", "url": "https://pubmed.ncbi.nlm.nih.gov/38353696" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5TCZ1-1", "protein_name": "SH3 and PX domain-containing protein 2A", "gene_name": "SH3PXD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14247-1", "protein_name": "Src substrate cortactin", "gene_name": "CTTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46821-1", "protein_name": "Microtubule-associated 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