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"authors": "Smith David W, Han Mi Ra, Park Joon Sung, Kim Kyung Rok, Yeom Taeho, Lee Ji Yeon, Kim Do Jin, Bingman Craig A, Kim Hyun-Jung, Jo Kyubong, Han Byung Woo, Phillips George N", "reference": { "type": "PubMed", "id": "23616405", "url": "https://pubmed.ncbi.nlm.nih.gov/23616405" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FNG3-1", "protein_name": "Protein RISC-INTERACTING CLEARING 3'-5' EXORIBONUCLEASE 2", "gene_name": "RICE2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FNG3", "url": "https://www.uniprot.org/uniprotkb/Q9FNG3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23616405", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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dehydrogenase genes play a role in non-host disease resistance by regulating pyrroline-5-carboxylate metabolism-induced hypersensitive response.", "journal": "Plant, cell & environment", "date": "2012-07", "authors": "Senthil-Kumar Muthappa, Mysore Kirankumar S", "reference": { "type": "PubMed", "id": "22321246", "url": "https://pubmed.ncbi.nlm.nih.gov/22321246" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FNK4-1", "protein_name": "Ornithine aminotransferase, mitochondrial", "gene_name": "DELTA-OAT", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FNK4", "url": "https://www.uniprot.org/uniprotkb/Q9FNK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22321246", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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lesions.", "journal": "Biochemistry", "date": "2003-03-18", "authors": "Morales-Ruiz Teresa, Birincioglu Mustafa, Jaruga Pawel, Rodriguez Henry, Roldan-Arjona Teresa, Dizdaroglu Miral", "reference": { "type": "PubMed", "id": "12627976", "url": "https://pubmed.ncbi.nlm.nih.gov/12627976" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FNY7-1", "protein_name": "N-glycosylase/DNA lyase OGG1", "gene_name": "OGG1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FNY7", "url": "https://www.uniprot.org/uniprotkb/Q9FNY7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12627976", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A comprehensive evaluation of a typical plant telomeric G-quadruplex (G4) DNA reveals the dynamics of G4 formation, rearrangement, and unfolding.", "journal": "The Journal of biological chemistry", "date": "2020-04-17", "authors": "Wu Wen-Qiang, Zhang Ming-Li, Song Chun-Peng", "reference": { "type": "PubMed", "id": "32184352", "url": "https://pubmed.ncbi.nlm.nih.gov/32184352" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FT72-1", "protein_name": "ATP-dependent DNA helicase Q-like 3", "gene_name": "RECQL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FT73-1", "protein_name": "ATP-dependent DNA helicase Q-like 2", "gene_name": "RECQL2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FT72", 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basic helix-loop-helix domain protein required for expression of DFR and BAN genes in Arabidopsis siliques.", "journal": "The Plant cell", "date": "2000-10", "authors": "Nesi N, Debeaujon I, Jond C, Pelletier G, Caboche M, Lepiniec L", "reference": { "type": "PubMed", "id": "11041882", "url": "https://pubmed.ncbi.nlm.nih.gov/11041882" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FT81-1", "protein_name": "Transcription factor TT8", "gene_name": "TT8", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FT81", "url": "https://www.uniprot.org/uniprotkb/Q9FT81" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 268, "end_pos": 268, "sequence_org": "L", "sequence_mut": "LDIYIYPKLLIFCGFISLYLRNYHLYIYV", "comment": "In tt8-1; loss of seed pigmentation.", 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[] } ] }, { "title": "Cytokinin functions as an asymmetric and anti-gravitropic signal in lateral roots.", "journal": "Nature communications", "date": "2019-08-06", "authors": "Waidmann Sascha, Ruiz Rosquete Michel, Sch\u00f6ller Maria, Sarkel Elizabeth, Lindner Heike, LaRue Therese, Pet\u0159\u00edk Ivan, D\u00fcnser Kai, Martopawiro Shanice, Sasidharan Rashmi, Novak Ondrej, Wabnik Krzysztof, Dinneny Jos\u00e9 R, Kleine-Vehn J\u00fcrgen", "reference": { "type": "PubMed", "id": "31387989", "url": "https://pubmed.ncbi.nlm.nih.gov/31387989" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FUJ3-1", "protein_name": "Cytokinin dehydrogenase 2", "gene_name": "CKX2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FUJ3", "url": "https://www.uniprot.org/uniprotkb/Q9FUJ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": 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Biol. Chem.", "date": "2007", "authors": "Chen Sixue, S\u00e1nchez-Fern\u00e1ndez Roc\u00edo, Lyver Elise R, Dancis Andrew, Rea Philip A", "reference": { "type": "PubMed", "id": "17517886", "url": "https://pubmed.ncbi.nlm.nih.gov/17517886" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FUT3-1", "protein_name": "ABC transporter B family member 23, mitochondrial", "gene_name": "ABCB23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVM1-1", "protein_name": "ABC transporter B family member 25, mitochondrial", "gene_name": "ABCB25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M0G9-1", "protein_name": "ABC transporter B family member 24, mitochondrial", "gene_name": "ABCB24", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FUT3", "url": "https://www.uniprot.org/uniprotkb/Q9FUT3" } ], "common_name": "Mouse-ear cress", 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Arabidopsis.", "journal": "Plant Physiol.", "date": "2009", "authors": "Bernard Delphine G, Cheng Youfa, Zhao Yunde, Balk Janneke", "reference": { "type": "PubMed", "id": "19710232", "url": "https://pubmed.ncbi.nlm.nih.gov/19710232" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FUT3-1", "protein_name": "ABC transporter B family member 23, mitochondrial", "gene_name": "ABCB23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVM1-1", "protein_name": "ABC transporter B family member 25, mitochondrial", "gene_name": "ABCB25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M0G9-1", "protein_name": "ABC transporter B family member 24, mitochondrial", "gene_name": "ABCB24", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FUT3", "url": "https://www.uniprot.org/uniprotkb/Q9FUT3" } ], "common_name": "Mouse-ear cress", "glygen_name": 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Nuclear-encoded and chloroplast-targeted enzymes in Arabidopsis.", "journal": "Plant physiology", "date": "2001-09", "authors": "Dirk L M, Williams M A, Houtz R L", "reference": { "type": "PubMed", "id": "11553738", "url": "https://pubmed.ncbi.nlm.nih.gov/11553738" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FUZ2-1", "protein_name": "Peptide deformylase 1B, chloroplastic/mitochondrial", "gene_name": "PDF1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FV53-1", "protein_name": "Peptide deformylase 1A, chloroplastic/mitochondrial", "gene_name": "PDF1A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FUZ2", "url": "https://www.uniprot.org/uniprotkb/Q9FUZ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11553738", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinctive features of the two classes of eukaryotic peptide deformylases.", "journal": "J. Mol. Biol.", "date": "2001", "authors": "Serero A, Giglione C, Meinnel T", "reference": { "type": "PubMed", "id": "11733990", "url": "https://pubmed.ncbi.nlm.nih.gov/11733990" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FUZ2-1", "protein_name": "Peptide deformylase 1B, chloroplastic/mitochondrial", "gene_name": "PDF1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FV53-1", "protein_name": "Peptide deformylase 1A, chloroplastic/mitochondrial", "gene_name": "PDF1A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FUZ2", "url": "https://www.uniprot.org/uniprotkb/Q9FUZ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11733990", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Matia Isabel, Chandrasekhara Chinmayi, Debures Anne, Blevins Todd, Cooke Richard, Medina Francisco J, Tourmente Sylvette, Pikaard Craig S, S\u00e1ez-V\u00e1squez Julio", "reference": { "type": "PubMed", "id": "21124873", "url": "https://pubmed.ncbi.nlm.nih.gov/21124873" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FVQ1-1", "protein_name": "Nucleolin 1", "gene_name": "NUCL1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FVQ1", "url": "https://www.uniprot.org/uniprotkb/Q9FVQ1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21124873", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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[] } ] }, { "title": "HRS1 acts as a negative regulator of abscisic acid signaling to promote timely germination of Arabidopsis seeds.", "journal": "PloS one", "date": "2012", "authors": "Wu Chongming, Feng Juanjuan, Wang Ran, Liu Hong, Yang Huixia, Rodriguez Pedro L, Qin Huanju, Liu Xin, Wang Daowen", "reference": { "type": "PubMed", "id": "22545134", "url": "https://pubmed.ncbi.nlm.nih.gov/22545134" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FX67-1", "protein_name": "Transcription factor HRS1", "gene_name": "HRS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FX67", "url": "https://www.uniprot.org/uniprotkb/Q9FX67" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22545134", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Muto Shu, Matsui Minami", "reference": { "type": "PubMed", "id": "18567831", "url": "https://pubmed.ncbi.nlm.nih.gov/18567831" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FXA3-1", "protein_name": "Transcription factor bHLH95", "gene_name": "BHLH95", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FXA3", "url": "https://www.uniprot.org/uniprotkb/Q9FXA3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18567831", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A mitochondrial alkaline/neutral invertase isoform (A/N-InvC) functions in developmental energy-demanding processes in Arabidopsis.", "journal": "Planta", "date": "2013", "authors": "Mart\u00edn Mariana L, Lechner Leandra, Zabaleta Eduardo J, Salerno Graciela L", "reference": { "type": "PubMed", "id": "23135328", "url": "https://pubmed.ncbi.nlm.nih.gov/23135328" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FXA8-1", "protein_name": "Alkaline/neutral invertase A, mitochondrial", "gene_name": "INVA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B9DFA8-1", "protein_name": "Alkaline/neutral invertase C, mitochondrial", "gene_name": "INVC; N-INVC", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FXA8", 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an Arabidopsis SHI-RELATED SEQUENCE gene produces abnormal anther dehiscence and floral development.", "journal": "Plant molecular biology", "date": "2010-11", "authors": "Kim Sang-Gyu, Lee Sangmin, Kim Youn-Sung, Yun Dae-Jin, Woo Je-Chang, Park Chung-Mo", "reference": { "type": "PubMed", "id": "20706774", "url": "https://pubmed.ncbi.nlm.nih.gov/20706774" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FXH7-1", "protein_name": "Protein SHI RELATED SEQUENCE 7", "gene_name": "SRS7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FXH7", "url": "https://www.uniprot.org/uniprotkb/Q9FXH7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20706774", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"Identification of kaonashi mutants showing abnormal pollen exine structure in Arabidopsis thaliana.", "journal": "Plant & cell physiology", "date": "2008-10", "authors": "Suzuki Toshiya, Masaoka Kanari, Nishi Masatomo, Nakamura Kenzo, Ishiguro Sumie", "reference": { "type": "PubMed", "id": "18779216", "url": "https://pubmed.ncbi.nlm.nih.gov/18779216" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FY54-1", "protein_name": "Probable sucrose-phosphate synthase 2", "gene_name": "SPS2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FY54", "url": "https://www.uniprot.org/uniprotkb/Q9FY54" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 596, "end_pos": 596, "sequence_org": "P", "sequence_mut": "L", "comment": "In kns2-1; pollen grain with collapsed 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Diverse range of gene activity during Arabidopsis thaliana leaf senescence includes pathogen-independent induction of defense-related genes.", "journal": "Plant Mol. Biol.", "date": "1999", "authors": "Quirino B F, Normanly J, Amasino R M", "reference": { "type": "PubMed", "id": "10412905", "url": "https://pubmed.ncbi.nlm.nih.gov/10412905" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FY94-1", "protein_name": "Bidirectional sugar transporter SWEET15", "gene_name": "SWEET15", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FY94", "url": "https://www.uniprot.org/uniprotkb/Q9FY94" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10412905", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Chlorophyll breakdown: pheophorbide a oxygenase is a Rieske-type iron-sulfur protein, encoded by the accelerated cell death 1 gene.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2003-12-09", "authors": "Pruzinsk\u00e1 Adriana, Tanner Gaby, Anders Iwona, Roca Maria, H\u00f6rtensteiner Stefan", "reference": { "type": "PubMed", "id": "14657372", "url": "https://pubmed.ncbi.nlm.nih.gov/14657372" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FYC2-1", "protein_name": "Pheophorbide a oxygenase, chloroplastic", "gene_name": "PAO", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FYC2", "url": "https://www.uniprot.org/uniprotkb/Q9FYC2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis-accelerated cell death gene ACD1 is involved in oxygenation of pheophorbide a: inhibition of the pheophorbide a oxygenase activity does not lead to the `stay-green` phenotype in Arabidopsis.", "journal": "Plant & cell physiology", "date": "2003-12", "authors": "Tanaka Ryouichi, Hirashima Masumi, Satoh Soichirou, Tanaka Ayumi", "reference": { "type": "PubMed", "id": "14701922", "url": "https://pubmed.ncbi.nlm.nih.gov/14701922" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FYC2-1", "protein_name": "Pheophorbide a oxygenase, chloroplastic", "gene_name": "PAO", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FYC2", "url": "https://www.uniprot.org/uniprotkb/Q9FYC2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14701922", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The wound-inducible Lls1 gene from maize is an orthologue of the Arabidopsis Acd1 gene, and the LLS1 protein is present in non-photosynthetic tissues.", "journal": "Plant Mol. Biol.", "date": "2004", "authors": "Yang Manli, Wardzala Ellen, Johal Gurmukh S, Gray John", "reference": { "type": "PubMed", "id": "15159621", "url": "https://pubmed.ncbi.nlm.nih.gov/15159621" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FYC2-1", "protein_name": "Pheophorbide a oxygenase, chloroplastic", "gene_name": "PAO", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FYC2", "url": "https://www.uniprot.org/uniprotkb/Q9FYC2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15159621", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel suppressor of cell death in plants encoded by the Lls1 gene of maize.", "journal": "Cell", "date": "1997", "authors": "Gray J, Close P S, Briggs S P, Johal G S", "reference": { "type": "PubMed", "id": "9094711", "url": "https://pubmed.ncbi.nlm.nih.gov/9094711" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FYC2-1", "protein_name": "Pheophorbide a oxygenase, chloroplastic", "gene_name": "PAO", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FYC2", "url": "https://www.uniprot.org/uniprotkb/Q9FYC2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9094711", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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