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Plant", "date": "2009", "authors": "Zhu Huifen, Li Guo-Jing, Ding Lei, Cui Xiangqin, Berg Howard, Assmann Sarah M, Xia Yiji", "reference": { "type": "PubMed", "id": "19825634", "url": "https://pubmed.ncbi.nlm.nih.gov/19825634" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49177-1", "protein_name": "Guanine nucleotide-binding protein subunit beta", "gene_name": "AGB1; GB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C516-1", "protein_name": "Extra-large guanine nucleotide-binding protein 3", "gene_name": "XLG3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "C6KIE6-1", "protein_name": "Extra-large guanine nucleotide-binding protein 2", "gene_name": "XLG2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49177", "url": "https://www.uniprot.org/uniprotkb/P49177" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19825634", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis heterotrimeric G-protein regulates cell wall defense and resistance to necrotrophic fungi.", "journal": "Molecular plant", "date": "2012-01", "authors": "Delgado-Cerezo Magdalena, S\u00e1nchez-Rodr\u00edguez Clara, Escudero Viviana, Miedes Eva, Fern\u00e1ndez Paula Virginia, Jord\u00e1 Luc\u00eda, Hern\u00e1ndez-Blanco Camilo, S\u00e1nchez-Vallet Andrea, Bednarek Pawel, Schulze-Lefert Paul, Somerville Shauna, Estevez Jos\u00e9 Manuel, Persson Staffan, Molina Antonio", "reference": { "type": "PubMed", "id": "21980142", "url": "https://pubmed.ncbi.nlm.nih.gov/21980142" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49177-1", "protein_name": "Guanine nucleotide-binding protein subunit beta", "gene_name": "AGB1; 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U.S.A.", "date": "1994", "authors": "Weiss C A, Garnaat C W, Mukai K, Hu Y, Ma H", "reference": { "type": "PubMed", "id": "7937804", "url": "https://pubmed.ncbi.nlm.nih.gov/7937804" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P49177-1", "protein_name": "Guanine nucleotide-binding protein subunit beta", "gene_name": "AGB1; GB1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49177", "url": "https://www.uniprot.org/uniprotkb/P49177" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.7937804", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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"Arabidopsis NPL1: a phototropin homolog controlling the chloroplast high-light avoidance response.", "journal": "Science (New York, N.Y.)", "date": "2001-03-16", "authors": "Kagawa T, Sakai T, Suetsugu N, Oikawa K, Ishiguro S, Kato T, Tabata S, Okada K, Wada M", "reference": { "type": "PubMed", "id": "11251116", "url": "https://pubmed.ncbi.nlm.nih.gov/11251116" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P93025-1", "protein_name": "Phototropin-2", "gene_name": "PHOT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 727, "end_pos": 727, "sequence_org": "T", "sequence_mut": "I", "comment": "In cav1-2; loss of chloroplast avoidance response in response to high fluence blue light.", "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" }, { "database": "PubMed", "id": "11251116", "url": "https://pubmed.ncbi.nlm.nih.gov/11251116" } ], "uniprot_canonical_ac": "P93025-1" } ], "record_id": "pubmed.11251116", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis nph1 and npl1: blue light receptors that mediate both phototropism and chloroplast relocation.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2001-06-05", "authors": "Sakai T, Kagawa T, Kasahara M, Swartz T E, Christie J M, Briggs W R, Wada M, Okada K", "reference": { "type": "PubMed", "id": "11371609", "url": "https://pubmed.ncbi.nlm.nih.gov/11371609" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P93025-1", "protein_name": "Phototropin-2", "gene_name": "PHOT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93025", "url": "https://www.uniprot.org/uniprotkb/P93025" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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Genet.", "date": "1996", "authors": "Vucich V A, Gasser C S", "reference": { "type": "PubMed", "id": "8914512", "url": "https://pubmed.ncbi.nlm.nih.gov/8914512" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q38931-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase FKBP62", "gene_name": "FKBP62; ROF1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38931", "url": "https://www.uniprot.org/uniprotkb/Q38931" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8914512", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" 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"Gaillard C, Moffatt B A, Blacker M, Laloue M", "reference": { "type": "PubMed", "id": "9520269", "url": "https://pubmed.ncbi.nlm.nih.gov/9520269" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P31166-1", "protein_name": "Adenine phosphoribosyltransferase 1, chloroplastic", "gene_name": "APT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P31166", "url": "https://www.uniprot.org/uniprotkb/P31166" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9520269", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94JU3", "url": "https://www.uniprot.org/uniprotkb/Q94JU3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10330469", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "COP9 signalosome subunit 7 from Arabidopsis interacts with and regulates the small subunit of ribonucleotide reductase (RNR2).", "journal": "Plant molecular biology", "date": "2011-09", "authors": "Halimi Yair, Dessau Moshe, Pollak Shaul, Ast Tslil, Erez Tamir, Livnat-Levanon Nurit, Karniol Baruch, Hirsch Joel A, Chamovitz Daniel A", "reference": { "type": "PubMed", "id": "21614643", "url": "https://pubmed.ncbi.nlm.nih.gov/21614643" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94JU3-1", "protein_name": "COP9 signalosome complex subunit 7", "gene_name": "CSN7; FUS5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSD0-1", "protein_name": "Ribonucleoside-diphosphate reductase small chain C", "gene_name": "TSO2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P50651-1", "protein_name": "Ribonucleoside-diphosphate reductase small chain A", "gene_name": "RNR2A", "tax_name": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"Regulation of Chloroplast Protein Import by the Ubiquitin E3 Ligase SP1 Is Important for Stress Tolerance in Plants.", "journal": "Current biology : CB", "date": "2015-10-05", "authors": "Ling Qihua, Jarvis Paul", "reference": { "type": "PubMed", "id": "26387714", "url": "https://pubmed.ncbi.nlm.nih.gov/26387714" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L7N4-1", "protein_name": "E3 ubiquitin-protein ligase SP1", "gene_name": "DAL1; SP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L7N4", "url": "https://www.uniprot.org/uniprotkb/Q8L7N4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.26387714", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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U.S.A.", "date": "2002", "authors": "Fulgosi Hrvoje, Gerdes Lars, Westphal Sabine, Glockmann Christel, Soll Jurgen", "reference": { "type": "PubMed", "id": "12169665", "url": "https://pubmed.ncbi.nlm.nih.gov/12169665" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9FYL3-1", "protein_name": "ALBINO3-like protein 1, chloroplastic", "gene_name": "ALB4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FYL3", "url": "https://www.uniprot.org/uniprotkb/Q9FYL3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12169665", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A second thylakoid membrane-localized Alb3/OxaI/YidC homologue is involved in proper chloroplast biogenesis in Arabidopsis thaliana.", "journal": "J. 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]