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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pollen-expressed transcription factor 2 encodes a novel plant-specific TFIIB-related protein that is required for pollen germination and embryogenesis in Arabidopsis.", "journal": "Molecular plant", "date": "2013-07", "authors": "Niu Qian-Kun, Liang Yan, Zhou Jing-Jing, Dou Xiao-Ying, Gao Shu-Chen, Chen Li-Qun, Zhang Xue-Qin, Ye De", "reference": { "type": "PubMed", "id": "23713077", "url": "https://pubmed.ncbi.nlm.nih.gov/23713077" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O81787-1", "protein_name": "Plant-specific TFIIB-related protein PTF2", "gene_name": "PTF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P28148-1", "protein_name": "TATA-box-binding protein 2", "gene_name": "TBP2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81787", "url": "https://www.uniprot.org/uniprotkb/O81787" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23713077", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional reconstitution of Arabidopsis thaliana plant uncoupling mitochondrial protein (AtPUMP1) expressed in Escherichia coli.", "journal": "FEBS letters", "date": "2001-09-14", "authors": "Boreck\u00fd J, Maia I G, Costa A D, Jezek P, Chaimovich H, de Andrade P B, Vercesi A E, Arruda P", "reference": { "type": "PubMed", "id": "11566183", "url": "https://pubmed.ncbi.nlm.nih.gov/11566183" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O81845-1", "protein_name": "Mitochondrial uncoupling protein 1", "gene_name": "PUMP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11566183", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Overexpression of plant uncoupling mitochondrial protein in transgenic tobacco increases tolerance to oxidative stress.", "journal": "Journal of bioenergetics and biomembranes", "date": "2003-06", "authors": "Brandalise Marcos, Maia Ivan G, Boreck\u00fd Jiri, Vercesi An\u00edbal E, Arruda Paulo", "reference": { "type": "PubMed", "id": "13678271", "url": "https://pubmed.ncbi.nlm.nih.gov/13678271" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O81845-1", "protein_name": "Mitochondrial uncoupling protein 1", "gene_name": "PUMP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.13678271", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mitochondrial uncoupling protein is required for efficient photosynthesis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006-12-19", "authors": "Sweetlove Lee J, Lytovchenko Anna, Morgan Megan, Nunes-Nesi Adriano, Taylor Nicolas L, Baxter Charles J, Eickmeier Ira, Fernie Alisdair R", "reference": { "type": "PubMed", "id": "17148605", "url": "https://pubmed.ncbi.nlm.nih.gov/17148605" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O81845-1", "protein_name": "Mitochondrial uncoupling protein 1", "gene_name": "PUMP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81845", "url": "https://www.uniprot.org/uniprotkb/O81845" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17148605", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"Arabidopsis KRPs have distinct inhibitory activity toward cyclin D2-associated kinases, including plant-specific B-type cyclin-dependent kinase.", "journal": "FEBS letters", "date": "2006-01-09", "authors": "Nakai Tomohiro, Kato Ko, Shinmyo Atsuhiko, Sekine Masami", "reference": { "type": "PubMed", "id": "16376885", "url": "https://pubmed.ncbi.nlm.nih.gov/16376885" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q0WNX9-1", "protein_name": "Cyclin-dependent kinase inhibitor 6", "gene_name": "KRP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCR2-1", "protein_name": "Cyclin-dependent kinase inhibitor 2", "gene_name": "KRP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94CL9-1", "protein_name": "Cyclin-dependent kinase inhibitor 7", "gene_name": "ICK5; KRP7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKB5-1", "protein_name": "Cyclin-dependent kinase inhibitor 3", "gene_name": "ICK6; KRP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P24100-1", "protein_name": "Cyclin-dependent kinase A-1", "gene_name": "CDKA-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q67Y93-1", "protein_name": "Cyclin-dependent kinase inhibitor 1", "gene_name": "KRP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYJ3-1", "protein_name": "Cyclin-dependent kinase inhibitor 4", "gene_name": "KRP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LRY0-1", "protein_name": "Cyclin-dependent kinase inhibitor 5", "gene_name": "KRP5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNX9", "url": "https://www.uniprot.org/uniprotkb/Q0WNX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16376885", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis cyclin-dependent kinase inhibitors are nuclear-localized and show different localization patterns within the nucleoplasm.", "journal": "Plant Cell Rep.", "date": "2007", "authors": "Bird David A, Buruiana Miruna M, Zhou Yongming, Fowke Larry C, Wang Hong", "reference": { "type": "PubMed", "id": "17253089", "url": "https://pubmed.ncbi.nlm.nih.gov/17253089" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q0WNX9-1", "protein_name": "Cyclin-dependent kinase inhibitor 6", "gene_name": "KRP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCR2-1", "protein_name": "Cyclin-dependent kinase inhibitor 2", "gene_name": "KRP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94CL9-1", "protein_name": "Cyclin-dependent kinase inhibitor 7", "gene_name": "ICK5; KRP7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKB5-1", "protein_name": "Cyclin-dependent kinase inhibitor 3", "gene_name": "ICK6; KRP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q67Y93-1", "protein_name": "Cyclin-dependent kinase inhibitor 1", "gene_name": "KRP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYJ3-1", "protein_name": "Cyclin-dependent kinase inhibitor 4", "gene_name": "KRP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LRY0-1", "protein_name": "Cyclin-dependent kinase inhibitor 5", "gene_name": "KRP5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNX9", "url": "https://www.uniprot.org/uniprotkb/Q0WNX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17253089", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Targeted degradation of the cyclin-dependent kinase inhibitor ICK4/KRP6 by RING-type E3 ligases is essential for mitotic cell cycle progression during Arabidopsis gametogenesis.", "journal": "The Plant cell", "date": "2008-06", "authors": "Liu Jingjing, Zhang Yiyue, Qin Genji, Tsuge Tomohiko, Sakaguchi Norihiro, Luo Guo, Sun Kangtai, Shi Dongqiao, Aki Shiori, Zheng Nuoyan, Aoyama Takashi, Oka Atsuhiro, Yang Weicai, Umeda Masaaki, Xie Qi, Gu Hongya, Qu Li-Jia", "reference": { "type": "PubMed", "id": "18552199", "url": "https://pubmed.ncbi.nlm.nih.gov/18552199" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q0WNX9-1", "protein_name": "Cyclin-dependent kinase inhibitor 6", "gene_name": "KRP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q4TU14-1", "protein_name": "E3 ubiquitin-protein ligase RHF1A", "gene_name": "RHF1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZT42-1", "protein_name": "E3 ubiquitin-protein ligase RHF2A", "gene_name": "RHF2A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WNX9", "url": "https://www.uniprot.org/uniprotkb/Q0WNX9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18552199", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RIN4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis.", "journal": "Cell", "date": "2002-03-22", "authors": "Mackey David, Holt Ben F, Wiig Aaron, Dangl Jeffery L", "reference": { "type": "PubMed", "id": "11955429", "url": "https://pubmed.ncbi.nlm.nih.gov/11955429" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GYN5-1", "protein_name": "RPM1-interacting protein 4", "gene_name": "RIN4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39214-1", "protein_name": "Disease resistance protein RPM1", "gene_name": "RPM1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11955429", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Initiation of RPS2-specified disease resistance in Arabidopsis is coupled to the AvrRpt2-directed elimination of RIN4.", "journal": "Cell", "date": "2003-02-07", "authors": "Axtell Michael J, Staskawicz Brian J", "reference": { "type": "PubMed", "id": "12581526", "url": "https://pubmed.ncbi.nlm.nih.gov/12581526" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GYN5-1", "protein_name": "RPM1-interacting protein 4", "gene_name": "RIN4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42484-1", "protein_name": "Disease resistance protein RPS2", "gene_name": "RPS2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12581526", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated resistance.", "journal": "Cell", "date": "2003-02-07", "authors": "Mackey David, Belkhadir Youssef, Alonso Jose M, Ecker Joseph R, Dangl Jeffery L", "reference": { "type": "PubMed", "id": "12581527", "url": "https://pubmed.ncbi.nlm.nih.gov/12581527" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GYN5-1", "protein_name": "RPM1-interacting protein 4", "gene_name": "RIN4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42484-1", "protein_name": "Disease resistance protein RPS2", "gene_name": "RPS2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GYN5", "url": "https://www.uniprot.org/uniprotkb/Q8GYN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12581527", 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Plants", "date": "2016", "authors": "Yoshida Yamato, Mogi Yuko, TerBush Allan D, Osteryoung Katherine W", "reference": { "type": "PubMed", "id": "27322658", "url": "https://pubmed.ncbi.nlm.nih.gov/27322658" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LXJ0-1", "protein_name": "Cell division protein FtsZ homolog 2-2, chloroplastic", "gene_name": "FTSZ2-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82533-1", "protein_name": "Cell division protein FtsZ homolog 2-1, chloroplastic", "gene_name": "FTSZ2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42545-1", "protein_name": "Cell division protein FtsZ homolog 1, chloroplastic", "gene_name": "FTSZ1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LXJ0", "url": "https://www.uniprot.org/uniprotkb/Q9LXJ0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.27322658", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation and analysis of a stromule-overproducing Arabidopsis mutant suggest the role of PARC6 in plastid morphology maintenance in the leaf epidermis.", "journal": "Physiol. Plantarum", "date": "2018", "authors": "Itoh Ryuuichi D, Ishikawa Hiroki, Nakajima Kohdai P, Moriyama Shota, Fujiwara Makoto T", "reference": { "type": "PubMed", "id": "28984364", "url": "https://pubmed.ncbi.nlm.nih.gov/28984364" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LXJ0-1", "protein_name": "Cell division protein FtsZ homolog 2-2, chloroplastic", "gene_name": "FTSZ2-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82533-1", "protein_name": "Cell division protein FtsZ homolog 2-1, chloroplastic", "gene_name": "FTSZ2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MBA2-1", "protein_name": "Septum site-determining protein minD homolog, chloroplastic", "gene_name": "MIND1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VY16-1", "protein_name": "Plastid division protein CDP1, chloroplastic", "gene_name": "CDP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LXJ0", "url": "https://www.uniprot.org/uniprotkb/Q9LXJ0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 296, "end_pos": 296, "sequence_org": "A", "sequence_mut": "G", "comment": "In arc11; loss of homodimerization, abnormal intraplastidic localization patterns, heterogeneous and reduced population of chloroplasts in mesophyll cells and petals, with normal and larger plastids, due to reduced chloroplast divisions and asymmetrically constricted chloroplasts, and highly elongated and multiple-arrayed chloroplasts in developing green tissues.", "evidence": [ { "database": "UniProtKB", "id": "Q9MBA2", "url": "https://www.uniprot.org/uniprotkb/Q9MBA2" }, { "database": "PubMed", "id": "10801439", "url": "https://pubmed.ncbi.nlm.nih.gov/10801439" }, { "database": "PubMed", "id": "19584524", "url": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential impacts of FtsZ proteins on plastid division in the shoot apex of Arabidopsis.", "journal": "Developmental biology", "date": "2018-09-01", "authors": "Swid Neora, Nevo Reinat, Kiss Vladimir, Kapon Ruti, Dagan Shlomi, Snir Orli, Adam Zach, Falconet Denis, Reich Ziv, Charuvi Dana", "reference": { "type": "PubMed", "id": "29920253", "url": "https://pubmed.ncbi.nlm.nih.gov/29920253" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LXJ0-1", "protein_name": "Cell division protein FtsZ homolog 2-2, chloroplastic", "gene_name": "FTSZ2-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82533-1", "protein_name": "Cell division protein FtsZ homolog 2-1, chloroplastic", "gene_name": "FTSZ2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42545-1", "protein_name": "Cell division 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis cryptochrome 1 interacts with SPA1 to suppress COP1 activity in response to blue light.", "journal": "Genes Dev.", "date": "2011", "authors": "Liu Bin, Zuo Zecheng, Liu Hongtao, Liu Xuanming, Lin Chentao", "reference": { "type": "PubMed", "id": "21511871", "url": "https://pubmed.ncbi.nlm.nih.gov/21511871" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LJR3-1", "protein_name": "Protein SPA1-RELATED 3", "gene_name": "SPA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BM7-1", "protein_name": "Protein SPA1-RELATED 4", "gene_name": "SPA4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q43125-1", "protein_name": "Cryptochrome-1", "gene_name": "CRY1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYX2-1", 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