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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The role of NDR1 in avirulence gene-directed signaling and control of programmed cell death in Arabidopsis.", "journal": "Plant physiology", "date": "2001-11", "authors": "Shapiro A D, Zhang C", "reference": { "type": "PubMed", "id": "11706189", "url": "https://pubmed.ncbi.nlm.nih.gov/11706189" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48915-1", "protein_name": "Protein NDR1", "gene_name": "NDR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48915", "url": "https://www.uniprot.org/uniprotkb/O48915" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11706189", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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U.S.A.", "date": "1999", "authors": "Mulichak A M, Theisen M J, Essigmann B, Benning C, Garavito R M", "reference": { "type": "PubMed", "id": "10557279", "url": "https://pubmed.ncbi.nlm.nih.gov/10557279" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48917-1", "protein_name": "UDP-sulfoquinovose synthase, chloroplastic", "gene_name": "SQD1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48917", "url": "https://www.uniprot.org/uniprotkb/O48917" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10557279", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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A signal transducer of the phototropic response in Arabidopsis.", "journal": "The Plant cell", "date": "2000-02", "authors": "Sakai T, Wada T, Ishiguro S, Okada K", "reference": { "type": "PubMed", "id": "10662859", "url": "https://pubmed.ncbi.nlm.nih.gov/10662859" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48963-1", "protein_name": "Phototropin-1", "gene_name": "PHOT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FMF5-1", "protein_name": "Root phototropism protein 3", "gene_name": "NPH3; RPT3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q682S0-1", "protein_name": "Root phototropism protein 2", "gene_name": "RPT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48963", "url": "https://www.uniprot.org/uniprotkb/O48963" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": 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[] } ] }, { "title": "A transgene encoding a blue-light receptor, phot1, restores blue-light responses in the Arabidopsis phot1 phot2 double mutant.", "journal": "Journal of experimental botany", "date": "2004-02", "authors": "Doi Michio, Shigenaga Ayako, Emi Takashi, Kinoshita Toshinori, Shimazaki Ken-Ichiro", "reference": { "type": "PubMed", "id": "14739272", "url": "https://pubmed.ncbi.nlm.nih.gov/14739272" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48963-1", "protein_name": "Phototropin-1", "gene_name": "PHOT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93025-1", "protein_name": "Phototropin-2", "gene_name": "PHOT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48963", "url": "https://www.uniprot.org/uniprotkb/O48963" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional analysis of each blue light receptor, cry1, cry2, phot1, and phot2, by using combinatorial multiple mutants in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2004-02-24", "authors": "Ohgishi Maki, Saji Kensuke, Okada Kiyotaka, Sakai Tatsuya", "reference": { "type": "PubMed", "id": "14982991", "url": "https://pubmed.ncbi.nlm.nih.gov/14982991" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48963-1", "protein_name": "Phototropin-1", "gene_name": "PHOT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93025-1", "protein_name": "Phototropin-2", "gene_name": "PHOT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48963", "url": "https://www.uniprot.org/uniprotkb/O48963" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14982991", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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F", "date": "2013", "authors": "Halavaty Andrei S, Moffat Keith", "reference": { "type": "PubMed", "id": "24316821", "url": "https://pubmed.ncbi.nlm.nih.gov/24316821" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48963-1", "protein_name": "Phototropin-1", "gene_name": "PHOT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48963", "url": "https://www.uniprot.org/uniprotkb/O48963" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24316821", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pectin methylesterase is induced in Arabidopsis upon infection and is necessary for a successful colonization by necrotrophic pathogens.", "journal": "Molecular plant-microbe interactions : MPMI", "date": "2011-04", "authors": "Raiola Alessandro, Lionetti Vincenzo, Elmaghraby Ibrahim, Immerzeel Peter, Mellerowicz Ewa J, Salvi Giovanni, Cervone Felice, Bellincampi Daniela", "reference": { "type": "PubMed", "id": "21171891", "url": "https://pubmed.ncbi.nlm.nih.gov/21171891" }, "referenced_glycans": [], 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THE PROCESSIVE ACTIVITY OF CO-EXPRESSED PECTIN METHYLESTERASE 3 IN A pH-DEPENDENT MANNER.", "journal": "The Journal of biological chemistry", "date": "2015-09-18", "authors": "S\u00e9n\u00e9chal Fabien, L'Enfant M\u00e9lanie, Domon Jean-Marc, Rosiau Emeline, Cr\u00e9peau Marie-Jeanne, Surcouf Ogier, Esquivel-Rodriguez Juan, Marcelo Paulo, Mareck Alain, Gu\u00e9rineau Fran\u00e7ois, Kim Hyung-Rae, Mravec Jozef, Bonnin Estelle, Jamet Elisabeth, Kihara Daisuke, Lerouge Patrice, Ralet Marie-Christine, Pelloux J\u00e9r\u00f4me, Rayon Catherine", "reference": { "type": "PubMed", "id": "26183897", "url": "https://pubmed.ncbi.nlm.nih.gov/26183897" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O49006-1", "protein_name": "Pectinesterase/pectinesterase inhibitor 3", "gene_name": "PME3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SB37-1", "protein_name": "Pectinesterase inhibitor 7", "gene_name": "PMEI7", "tax_name": "Mouse-ear cress" } ], 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"Structural and dynamical characterization of the pH-dependence of the pectin methylesterase-pectin methylesterase inhibitor complex.", "journal": "J. Biol. Chem.", "date": "2017", "authors": "S\u00e9n\u00e9chal Fabien, Habrylo Olivier, Hocq Ludivine, Domon Jean-Marc, Marcelo Paulo, Lefebvre Val\u00e9rie, Pelloux J\u00e9r\u00f4me, Mercadante Davide", "reference": { "type": "PubMed", "id": "29109147", "url": "https://pubmed.ncbi.nlm.nih.gov/29109147" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O49006-1", "protein_name": "Pectinesterase/pectinesterase inhibitor 3", "gene_name": "PME3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SB37-1", "protein_name": "Pectinesterase inhibitor 7", "gene_name": "PMEI7", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49006", "url": "https://www.uniprot.org/uniprotkb/O49006" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 103, "end_pos": 103, 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expression of AtCOQ3, the Arabidopsis homologue of the yeast COQ3 gene, encoding a methyltransferase from plant mitochondria involved in ubiquinone biosynthesis.", "journal": "Plant J.", "date": "1998", "authors": "Avelange-Macherel M H, Joyard J", "reference": { "type": "PubMed", "id": "9628017", "url": "https://pubmed.ncbi.nlm.nih.gov/9628017" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O49354-1", "protein_name": "Ubiquinone biosynthesis O-methyltransferase, mitochondrial", "gene_name": "COQ3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49354", "url": "https://www.uniprot.org/uniprotkb/O49354" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9628017", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"reference": { "type": "PubMed", "id": "18291319", "url": "https://pubmed.ncbi.nlm.nih.gov/18291319" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O49394-1", "protein_name": "Xanthotoxin 5-hydroxylase CYP82C2", "gene_name": "CYP82C2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZ46-1", "protein_name": "Xanthotoxin 5-hydroxylase CYP82C4", "gene_name": "CYP82C4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49394", "url": "https://www.uniprot.org/uniprotkb/O49394" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18291319", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators.", "journal": "Plant Cell", "date": "2002", "authors": "Hosoda Kazuo, Imamura Aya, Katoh Etsuko, Hatta Tomohisa, Tachiki Mari, Yamada Hisami, Mizuno Takeshi, Yamazaki Toshimasa", "reference": { "type": "PubMed", "id": "12215502", "url": "https://pubmed.ncbi.nlm.nih.gov/12215502" }, "referenced_glycans": [], "referenced_proteins": [ { 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Plant", "date": "2015", "authors": "Glass Franziska, H\u00e4rtel Barbara, Zehrmann Anja, Verbitskiy Daniil, Takenaka Mizuki", "reference": { "type": "PubMed", "id": "26048647", "url": "https://pubmed.ncbi.nlm.nih.gov/26048647" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O49429-1", "protein_name": "Multiple organellar RNA editing factor 1, mitochondrial", "gene_name": "MORF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FWA6-1", "protein_name": "Pentatricopeptide repeat-containing protein At3g02330, mitochondrial", "gene_name": "PCMP-E90", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49429", "url": "https://www.uniprot.org/uniprotkb/O49429" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.26048647", "abstract": "", "glycosylation": [], 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation and characterization of Arabidopsis thaliana ISU1 gene.", "journal": "Biochimica et biophysica acta", "date": "2004-11-05", "authors": "Tone Yoshiko, Kawai-Yamada Maki, Uchimiya Hirofumi", "reference": { "type": "PubMed", "id": "15507320", "url": "https://pubmed.ncbi.nlm.nih.gov/15507320" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O49627-1", "protein_name": "Iron-sulfur cluster assembly protein 1", "gene_name": "ISU1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49627", "url": "https://www.uniprot.org/uniprotkb/O49627" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15507320", "abstract": "", "glycosylation": [], 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Closing plant stomata requires a homolog of an aluminum-activated malate transporter.", "journal": "Plant & cell physiology", "date": "2010-03", "authors": "Sasaki Takayuki, Mori Izumi C, Furuichi Takuya, Munemasa Shintaro, Toyooka Kiminori, Matsuoka Ken, Murata Yoshiyuki, Yamamoto Yoko", "reference": { "type": "PubMed", "id": "20154005", "url": "https://pubmed.ncbi.nlm.nih.gov/20154005" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O49696-1", "protein_name": 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