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}, { "title": "An abscisic acid inducible Arabidopsis MAPKKK, MAPKKK18 regulates leaf senescence via its kinase activity.", "journal": "Plant Mol. 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Behav.", "date": "2018", "authors": "Bai Fangwen, Matton Daniel P", "reference": { "type": "PubMed", "id": "30081740", "url": "https://pubmed.ncbi.nlm.nih.gov/30081740" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O80396-1", "protein_name": "Mitogen-activated protein kinase kinase 3", "gene_name": "MKK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SND6-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 20", "gene_name": "MAPKKK20", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80396", "url": "https://www.uniprot.org/uniprotkb/O80396" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.30081740", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mitogen-activated protein kinase cascades in plant hormone signaling.", "journal": "Front. Plant Sci.", "date": "2018", "authors": "Jagodzik Przemys\u0142aw, Tajdel-Zielinska Ma\u0142gorzata, Ciesla Agata, Marczak Ma\u0142gorzata, Ludwikow Agnieszka", "reference": { "type": "PubMed", "id": "30349547", "url": "https://pubmed.ncbi.nlm.nih.gov/30349547" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O80396-1", "protein_name": "Mitogen-activated protein kinase kinase 3", "gene_name": "MKK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P49597-1", "protein_name": "Protein phosphatase 2C 56", "gene_name": "ABI1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39023-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MPK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39026-1", "protein_name": "Mitogen-activated protein kinase 6", "gene_name": "MPK6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SND6-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 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(thiosulfate:cyanide sulfurtransferase) in plants: preliminary characterization of two rhodanese cDNAs from Arabidopsis thaliana.", "journal": "FEBS Lett.", "date": "2000", "authors": "Hatzfeld Y, Saito K", "reference": { "type": "PubMed", "id": "10734224", "url": "https://pubmed.ncbi.nlm.nih.gov/10734224" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O64530-1", "protein_name": "Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial", "gene_name": "MST1; STR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q24JL3-1", "protein_name": "Thiosulfate/3-mercaptopyruvate sulfurtransferase 2", "gene_name": "RDH2; STR2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O64530", "url": "https://www.uniprot.org/uniprotkb/O64530" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana 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"type": "PubMed", "id": "17169924", "url": "https://pubmed.ncbi.nlm.nih.gov/17169924" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O49596-1", "protein_name": "High mobility group B protein 2", "gene_name": "HMGB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49595-1", "protein_name": "High mobility group B protein 1", "gene_name": "HMGB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49597-1", "protein_name": "High mobility group B protein 5", "gene_name": "HMGB5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93047-1", "protein_name": "High mobility group B protein 3", "gene_name": "HMGB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42344-1", "protein_name": "High mobility group B protein 4", "gene_name": "HMGB4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49596", "url": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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high-mobility-group-1-like proteins.", "journal": "European journal of biochemistry", "date": "1997-12-15", "authors": "Stemmer C, Ritt C, Igloi G L, Grimm R, Grasser K D", "reference": { "type": "PubMed", "id": "9461286", "url": "https://pubmed.ncbi.nlm.nih.gov/9461286" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O49596-1", "protein_name": "High mobility group B protein 2", "gene_name": "HMGB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49595-1", "protein_name": "High mobility group B protein 1", "gene_name": "HMGB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49597-1", "protein_name": "High mobility group B protein 5", "gene_name": "HMGB5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93047-1", "protein_name": "High mobility group B protein 3", "gene_name": "HMGB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42344-1", "protein_name": "High mobility group B protein 4", 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and light-induced expression of a novel gene of NADPH-protochlorophyllide oxidoreductase isoform in Arabidopsis thaliana.", "journal": "FEBS Lett.", "date": "2000", "authors": "Oosawa N, Masuda T, Awai K, Fusada N, Shimada H, Ohta H, Takamiya K", "reference": { "type": "PubMed", "id": "10838072", "url": "https://pubmed.ncbi.nlm.nih.gov/10838072" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48741-1", "protein_name": "Protochlorophyllide reductase C, chloroplastic", "gene_name": "PORC; POR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P21218-1", "protein_name": "Protochlorophyllide reductase B, chloroplastic", "gene_name": "PORB", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48741", "url": "https://www.uniprot.org/uniprotkb/O48741" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10838072", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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thaliana: a third light- and NADPH-dependent protochlorophyllide oxidoreductase that is differentially regulated by light.", "journal": "Plant molecular biology", "date": "2001-12", "authors": "Su Q, Frick G, Armstrong G, Apel K", "reference": { "type": "PubMed", "id": "11785941", "url": "https://pubmed.ncbi.nlm.nih.gov/11785941" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48741-1", "protein_name": "Protochlorophyllide reductase C, chloroplastic", "gene_name": "PORC; POR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P21218-1", "protein_name": "Protochlorophyllide reductase B, chloroplastic", "gene_name": "PORB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42536-1", "protein_name": "Protochlorophyllide reductase A, chloroplastic", "gene_name": "PORA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48741", "url": "https://www.uniprot.org/uniprotkb/O48741" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11785941", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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light-dependent NADPH:protochlorophyllide oxidoreductases B and C is highly chlorophyll-deficient and developmentally arrested.", "journal": "The Plant journal : for cell and molecular biology", "date": "2003-07", "authors": "Frick Genevi\u00e8ve, Su Qingxiang, Apel Klaus, Armstrong Gregory A", "reference": { "type": "PubMed", "id": "12848821", "url": "https://pubmed.ncbi.nlm.nih.gov/12848821" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48741-1", "protein_name": "Protochlorophyllide reductase C, chloroplastic", "gene_name": "PORC; POR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P21218-1", "protein_name": "Protochlorophyllide reductase B, chloroplastic", "gene_name": "PORB", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48741", "url": "https://www.uniprot.org/uniprotkb/O48741" } ], "common_name": "Mouse-ear cress", "glygen_name": 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"date": "2010-10", "authors": "Akhtar Tariq A, Orsomando Giuseppe, Mehrshahi Payam, Lara-N\u00fa\u00f1ez Aurora, Bennett Malcolm J, Gregory Jesse F, Hanson Andrew D", "reference": { "type": "PubMed", "id": "21070406", "url": "https://pubmed.ncbi.nlm.nih.gov/21070406" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O65355-1", "protein_name": "Gamma-glutamyl hydrolase 2", "gene_name": "GGH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYL6-1", "protein_name": "Gamma-glutamyl hydrolase 1", "gene_name": "GGH1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65355", "url": "https://www.uniprot.org/uniprotkb/O65355" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21070406", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SUT2, a putative sucrose sensor in sieve elements.", "journal": "Plant Cell", "date": "2000", "authors": "Barker L, K\u00fchn C, Weise A, Schulz A, Gebhardt C, Hirner B, Hellmann H, Schulze W, Ward J M, Frommer W B", "reference": { "type": "PubMed", "id": "10899981", "url": "https://pubmed.ncbi.nlm.nih.gov/10899981" 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"database": "UniProtKB", "id": "O80605", "url": "https://www.uniprot.org/uniprotkb/O80605" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11135120", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interactions between co-expressed Arabidopsis sucrose transporters in the split-ubiquitin system.", "journal": "BMC Biochem.", "date": "2003", "authors": "Schulze Waltraud X, Reinders Anke, Ward John, Lalonde Sylvie, Frommer Wolf B", "reference": { "type": "PubMed", "id": "12689351", "url": "https://pubmed.ncbi.nlm.nih.gov/12689351" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O80605-1", "protein_name": "Sucrose transport protein SUC3", "gene_name": "SUC3; SUT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FE59-1", "protein_name": "Sucrose transport protein SUC4", "gene_name": "SUC4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39231-1", "protein_name": "Sucrose transport protein SUC2", "gene_name": "SUC2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80605", "url": "https://www.uniprot.org/uniprotkb/O80605" } ], 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Wounding enhances expression of AtSUC3, a sucrose transporter from Arabidopsis sieve elements and sink tissues.", "journal": "Plant Physiol.", "date": "2004", "authors": "Meyer Stefan, Lauterbach Christian, Niedermeier Matthias, Barth Inga, Sjolund Richard D, Sauer Norbert", "reference": { "type": "PubMed", "id": "14739351", "url": "https://pubmed.ncbi.nlm.nih.gov/14739351" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O80605-1", "protein_name": "Sucrose transport protein SUC3", "gene_name": "SUC3; SUT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80605", "url": "https://www.uniprot.org/uniprotkb/O80605" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14739351", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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"uniprot_canonical_ac": "O80996-1", "protein_name": "BRAP2 RING ZnF UBP domain-containing protein 2", "gene_name": "BRIZ2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "E5KGE0-1", "protein_name": "BRAP2 RING ZnF UBP domain-containing protein 1", "gene_name": "BRIZ1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80996", "url": "https://www.uniprot.org/uniprotkb/O80996" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20810661", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Long-term effects of mild salt stress on growth, ion accumulation and superoxide dismutase expression of Arabidopsis rosette leaves.", "journal": "Physiol. Plantarum", "date": "2008", "authors": "Attia Houneida, Arnaud Nicolas, Karray Najoua, Lacha\u00e2l Mokhtar", "reference": { "type": "PubMed", "id": "18275461", "url": "https://pubmed.ncbi.nlm.nih.gov/18275461" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O81235-1", "protein_name": "Superoxide dismutase [Mn] 1, mitochondrial", "gene_name": "MSD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O78310-1", "protein_name": "Superoxide dismutase [Cu-Zn] 2, chloroplastic", "gene_name": "CSD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P24704-1", "protein_name": "Superoxide dismutase [Cu-Zn] 1", "gene_name": "CSD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FK60-1", "protein_name": "Superoxide dismutase [Cu-Zn] 3", "gene_name": "CSD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU64-1", "protein_name": "Superoxide dismutase [Fe] 2, chloroplastic", "gene_name": "FSD2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81235", "url": "https://www.uniprot.org/uniprotkb/O81235" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18275461", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis chromatin-associated HMGA and HMGB use different nuclear targeting signals and display highly dynamic localization within the nucleus.", "journal": "The Plant cell", "date": "2006-11", "authors": "Launholt Dorte, Merkle Thomas, Houben Andreas, Schulz Alexander, Grasser Klaus D", "reference": { "type": "PubMed", "id": "17114349", "url": "https://pubmed.ncbi.nlm.nih.gov/17114349" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O49595-1", "protein_name": "High mobility group B protein 1", "gene_name": "HMGB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49597-1", "protein_name": "High mobility group B protein 5", "gene_name": "HMGB5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q43386-1", "protein_name": "HMG-Y-related protein A", "gene_name": "HMGA", "tax_name": "Mouse-ear cress" } ], 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"Sibout Richard, Eudes Aymerick, Mouille Gregory, Pollet Brigitte, Lapierre Catherine, Jouanin Lise, S\u00e9guin Armand", "reference": { "type": "PubMed", "id": "15937231", "url": "https://pubmed.ncbi.nlm.nih.gov/15937231" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O49482-1", "protein_name": "Cinnamyl alcohol dehydrogenase 5", "gene_name": "CAD5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P48523-1", "protein_name": "Cinnamyl alcohol dehydrogenase 4", "gene_name": "CAD4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49482", "url": "https://www.uniprot.org/uniprotkb/O49482" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15937231", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"date": "2002", "authors": "Funk Vanessa, Kositsup Boonthida, Zhao Chengsong, Beers Eric P", "reference": { "type": "PubMed", "id": "11788755", "url": "https://pubmed.ncbi.nlm.nih.gov/11788755" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O65493-1", "protein_name": "Cysteine protease XCP1", "gene_name": "XCP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LM66-1", "protein_name": "Cysteine protease XCP2", "gene_name": "XCP2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65493", "url": "https://www.uniprot.org/uniprotkb/O65493" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11788755", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"authors": "Ara\u00fajo Wagner L, Ishizaki Kimitsune, Nunes-Nesi Adriano, Larson Tony R, Tohge Takayuki, Krahnert Ina, Witt Sandra, Obata Toshihiro, Schauer Nicolas, Graham Ian A, Leaver Christopher J, Fernie Alisdair R", "reference": { "type": "PubMed", "id": "20501910", "url": "https://pubmed.ncbi.nlm.nih.gov/20501910" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23240-1", "protein_name": "D-2-hydroxyglutarate dehydrogenase, mitochondrial", "gene_name": "D2HGDH", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22854-1", "protein_name": "Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial", "gene_name": "ETFQO", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWG0-1", "protein_name": "Isovaleryl-CoA dehydrogenase, mitochondrial", "gene_name": "IVD", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23240", 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D-2-hydroxyglutarate dehydrogenase participates in the catabolism of lysine especially during senescence.", "journal": "The Journal of biological chemistry", "date": "2011-04-01", "authors": "Engqvist Martin K M, Kuhn Anke, Wienstroer Judith, Weber Katrin, Jansen Erwin E W, Jakobs Cornelis, Weber Andreas P M, Maurino Veronica G", "reference": { "type": "PubMed", "id": "21296880", "url": "https://pubmed.ncbi.nlm.nih.gov/21296880" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23240-1", "protein_name": "D-2-hydroxyglutarate dehydrogenase, mitochondrial", "gene_name": "D2HGDH", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23240", "url": "https://www.uniprot.org/uniprotkb/O23240" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21296880", "abstract": "", 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G T, Beeckman T, Inz\u00e9 D", "reference": { "type": "PubMed", "id": "11319029", "url": "https://pubmed.ncbi.nlm.nih.gov/11319029" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23249-1", "protein_name": "Cyclin-dependent kinases regulatory subunit 1", "gene_name": "CKS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P24100-1", "protein_name": "Cyclin-dependent kinase A-1", "gene_name": "CDKA-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P25859-1", "protein_name": "Cyclin-dependent kinase B1-1", "gene_name": "CDKB1-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23249", "url": "https://www.uniprot.org/uniprotkb/O23249" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 61, "end_pos": 61, "sequence_org": "E", "sequence_mut": "Q", "comment": "Loss of function and impaired interaction with CDKA-1 or CDKB1-1.", "evidence": [ { "database": "UniProtKB", "id": "O23249", "url": "https://www.uniprot.org/uniprotkb/O23249" }, { "database": "PubMed", "id": "11319029", "url": "https://pubmed.ncbi.nlm.nih.gov/11319029" } ], "uniprot_canonical_ac": "O23249-1" } ], "record_id": "pubmed.11319029", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of novel cyclin-dependent kinases interacting with the CKS1 protein of Arabidopsis.", "journal": "J. Exp. Bot.", "date": "2001", "authors": "Boudolf V, Rombauts S, Naudts M, Inz\u00e9 D, De Veylder L", "reference": { "type": "PubMed", "id": "11432958", "url": "https://pubmed.ncbi.nlm.nih.gov/11432958" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23249-1", "protein_name": "Cyclin-dependent kinases regulatory subunit 1", "gene_name": "CKS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LF80-1", "protein_name": "Cyclin-dependent kinase B2-1", "gene_name": "CDKB2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LG64-1", "protein_name": "Cyclin-dependent kinase B2-2", "gene_name": "CDKB2-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q2V419-1", "protein_name": "Cyclin-dependent kinase B1-2", "gene_name": "CDKB1-2; CDKB1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23249", "url": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis Cks1At protein binds the cyclin-dependent kinases Cdc2aAt and Cdc2bAt.", "journal": "FEBS Lett.", "date": "1997", "authors": "De Veylder L, Segers G, Glab N, Casteels P, Van Montagu M, Inze D", "reference": { "type": "PubMed", "id": "9276444", "url": "https://pubmed.ncbi.nlm.nih.gov/9276444" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23249-1", "protein_name": "Cyclin-dependent kinases regulatory subunit 1", "gene_name": "CKS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P24100-1", "protein_name": "Cyclin-dependent kinase A-1", "gene_name": "CDKA-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P25859-1", "protein_name": "Cyclin-dependent kinase B1-1", "gene_name": "CDKB1-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23249", "url": "https://www.uniprot.org/uniprotkb/O23249" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9276444", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Trans-species synthetic gene design allows resistance pyramiding and broad-spectrum engineering of virus resistance in plants.", "journal": "Plant biotechnology journal", "date": "2018-03-05", "authors": "Bastet Anna, Lederer Baptiste, Giovinazzo Nathalie, Arnoux Xavier, German-Retana Sylvie, Reinbold Catherine, Brault V\u00e9ronique, Garcia Damien, Djennane Samia, Gersch Sophie, Lemaire Olivier, Robaglia Christophe, Gallois Jean-Luc", "reference": { "type": "PubMed", "id": "29504210", "url": "https://pubmed.ncbi.nlm.nih.gov/29504210" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23252-1", "protein_name": "Eukaryotic translation initiation factor 4E-1", "gene_name": "EIF4E1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 114, "end_pos": 114, "sequence_org": "G", "sequence_mut": "R", "comment": "Normal bolting time and partial resistance to potyviruses such as clover yellow vein virus (ClYVV), watermelon mosaic virus (WMV) and turnip mosaic virus (TuMV). In eIF4E1(R); normal bolting time and increased resistance to potyviruses such as ClYVV, WMV, TuMV (including resistance-breaking strains TuMV-E116Q and TuMV-N163Y), lettuce mosaic virus (LMV) and plum pox virus (PPV), and to polerovirus such as beet mild yellowing virus isolate USA (BWYV-USA); when associated with L-69; D-80; D-81; A-84 and K-176.", "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" }, { "database": "PubMed", "id": "30784179", "url": "https://pubmed.ncbi.nlm.nih.gov/30784179" }, { "database": "PubMed", "id": "29504210", "url": "https://pubmed.ncbi.nlm.nih.gov/29504210" } ], "uniprot_canonical_ac": "O23252-1" }, { "start_pos": 176, "end_pos": 176, "sequence_org": "N", "sequence_mut": "K", "comment": "Normal bolting time and increased resistance to potyviruses such as clover yellow vein virus (ClYVV), watermelon mosaic virus (WMV) and turnip mosaic virus (TuMV). In eIF4E1(R); normal bolting time and increased resistance to potyvirus such as ClYVV, TuMV (including resistance-breaking strains TuMV-E116Q and TuMV-N163Y), WMV, lettuce mosaic virus (LMV) and plum pox virus (PPV), and to polerovirus such as beet mild yellowing virus isolate USA (BWYV-USA); when associated with L-69; D-80; D-81; A-84 and R-114.", "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" }, { "database": "PubMed", "id": "30784179", "url": "https://pubmed.ncbi.nlm.nih.gov/30784179" }, { "database": "PubMed", "id": "29504210", "url": "https://pubmed.ncbi.nlm.nih.gov/29504210" } ], "uniprot_canonical_ac": "O23252-1" }, { "start_pos": 69, "end_pos": 69, "sequence_org": "W", "sequence_mut": "L", "comment": "Normal bolting time and normal susceptibility to potyviruses such as clover yellow vein virus (ClYVV). In eIF4E1(R): Normal bolting time and increased resistance to potyviruses such as ClYVV, watermelon mosaic virus (WMV), turnip mosaic virus (TuMV, including resistance-breaking strains TuMV-E116Q and TuMV-N163Y), lettuce mosaic virus (LMV) and plum pox virus (PPV), and to polerovirus such as beet mild yellowing virus isolate USA (BWYV-USA); when associated with D-80; D-81; A-84; R-114 and K-176.", "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" }, { "database": "PubMed", "id": "30784179", "url": "https://pubmed.ncbi.nlm.nih.gov/30784179" }, { "database": "PubMed", "id": "29504210", "url": "https://pubmed.ncbi.nlm.nih.gov/29504210" } ], "uniprot_canonical_ac": "O23252-1" }, { "start_pos": 80, "end_pos": 80, "sequence_org": "T", "sequence_mut": "D", "comment": "Normal bolting time and increased resistance to potyviruses such as clover yellow vein virus (ClYVV), watermelon mosaic virus (WMV) and turnip mosaic virus (TuMV, including resistance-breaking strains TuMV-E116Q and TuMV-N163Y); when associated with D-81. In eIF4E1(R); normal bolting time and increased resistance to potyviruses such as ClYVV, WMV, TuMV (including resistance-breaking strains TuMV-E116Q and TuMV-N163Y), lettuce mosaic virus (LMV) and plum pox virus (PPV), and to polerovirus such as beet mild yellowing virus isolate USA (BWYV-USA); when associated with L-69; D-81; A-84; R-114 and K-176.", "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" }, { "database": "PubMed", "id": "30784179", "url": "https://pubmed.ncbi.nlm.nih.gov/30784179" }, { "database": "PubMed", "id": "29504210", "url": "https://pubmed.ncbi.nlm.nih.gov/29504210" } ], "uniprot_canonical_ac": "O23252-1" }, { "start_pos": 81, "end_pos": 81, "sequence_org": "S", "sequence_mut": "D", "comment": "Normal bolting time and increased resistance to potyviruses such as clover yellow vein virus (ClYVV), watermelon mosaic virus (WMV) and turnip mosaic virus (TuMV, including resistance-breaking strains TuMV-E116Q and TuMV-N163Y); when associated with D-80. In eIF4E1(R); normal bolting time and increased resistance to potyviruses such as ClYVV, WMV, TuMV (including resistance-breaking strains TuMV-E116Q and TuMV-N163Y), lettuce mosaic virus (LMV) and plum pox virus (PPV), and to polerovirus such as beet mild yellowing virus isolate USA (BWYV-USA); when associated with L-69; D-80; A-84; R-114 and K-176.", "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" }, { "database": "PubMed", "id": "30784179", "url": "https://pubmed.ncbi.nlm.nih.gov/30784179" }, { "database": "PubMed", "id": "29504210", "url": "https://pubmed.ncbi.nlm.nih.gov/29504210" } ], "uniprot_canonical_ac": "O23252-1" }, { "start_pos": 84, "end_pos": 84, "sequence_org": "S", "sequence_mut": "A", "comment": "Normal bolting time and partial resistance to potyviruses such as clover yellow vein virus (ClYVV). In eIF4E1(R); normal bolting time and increased resistance to potyviruses such as ClYVV, watermelon mosaic virus (WMV), turnip mosaic virus (TuMV, including resistance-breaking strains TuMV-E116Q and TuMV-N163Y), lettuce mosaic virus (LMV) and plum pox virus (PPV), and to polerovirus such as beet mild yellowing virus isolate USA (BWYV-USA); when associated with L-69; D-80; D-81; R-114 and K-176.", "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" }, { "database": "PubMed", "id": "30784179", "url": "https://pubmed.ncbi.nlm.nih.gov/30784179" }, { "database": "PubMed", "id": "29504210", "url": "https://pubmed.ncbi.nlm.nih.gov/29504210" } ], "uniprot_canonical_ac": "O23252-1" } ], "record_id": "pubmed.29504210", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mimicking natural polymorphism in eIF4E by CRISPR-Cas9 base editing is associated with resistance to potyviruses.", "journal": "Plant biotechnology journal", "date": "2019-09", "authors": "Bastet Anna, Zafirov Delyan, Giovinazzo Nathalie, Guyon-Debast Anouchka, Nogu\u00e9 Fabien, Robaglia Christophe, Gallois Jean-Luc", "reference": { "type": "PubMed", "id": "30784179", "url": "https://pubmed.ncbi.nlm.nih.gov/30784179" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O23252-1", "protein_name": "Eukaryotic translation initiation factor 4E-1", "gene_name": "EIF4E1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 114, "end_pos": 114, "sequence_org": "G", "sequence_mut": "R", "comment": "Normal bolting time and partial resistance to potyviruses such as clover yellow vein virus (ClYVV), watermelon mosaic virus (WMV) and turnip mosaic virus (TuMV). In eIF4E1(R); normal bolting time and increased resistance to potyviruses such as ClYVV, WMV, TuMV (including resistance-breaking strains TuMV-E116Q and TuMV-N163Y), lettuce mosaic virus (LMV) and plum pox virus (PPV), and to polerovirus such as beet mild yellowing virus isolate USA (BWYV-USA); when associated with L-69; D-80; D-81; A-84 and K-176.", "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" }, { "database": "PubMed", "id": "30784179", "url": "https://pubmed.ncbi.nlm.nih.gov/30784179" }, { "database": "PubMed", "id": "29504210", "url": "https://pubmed.ncbi.nlm.nih.gov/29504210" } ], "uniprot_canonical_ac": "O23252-1" }, { "start_pos": 176, "end_pos": 176, "sequence_org": "N", "sequence_mut": "K", "comment": "Normal bolting time and increased resistance to potyviruses such as clover yellow vein virus (ClYVV), watermelon mosaic virus (WMV) and turnip mosaic virus (TuMV). In eIF4E1(R); normal bolting time and increased resistance to potyvirus such as ClYVV, TuMV (including resistance-breaking strains TuMV-E116Q and TuMV-N163Y), WMV, lettuce mosaic virus (LMV) and plum pox virus (PPV), and to polerovirus such as beet mild yellowing virus isolate USA (BWYV-USA); when associated with L-69; D-80; D-81; A-84 and R-114.", "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" }, { "database": "PubMed", "id": "30784179", "url": "https://pubmed.ncbi.nlm.nih.gov/30784179" }, { "database": "PubMed", "id": "29504210", "url": "https://pubmed.ncbi.nlm.nih.gov/29504210" } ], "uniprot_canonical_ac": "O23252-1" }, { "start_pos": 69, "end_pos": 69, "sequence_org": "W", "sequence_mut": "L", "comment": "Normal bolting time and normal susceptibility to potyviruses such as clover yellow vein virus (ClYVV). In eIF4E1(R): Normal bolting time and increased resistance to potyviruses such as ClYVV, watermelon mosaic virus (WMV), turnip mosaic virus (TuMV, including resistance-breaking strains TuMV-E116Q and TuMV-N163Y), lettuce mosaic virus (LMV) and plum pox virus (PPV), and to polerovirus such as beet mild yellowing virus isolate USA (BWYV-USA); when associated with D-80; D-81; A-84; R-114 and K-176.", "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" }, { "database": "PubMed", "id": "30784179", "url": "https://pubmed.ncbi.nlm.nih.gov/30784179" }, { "database": "PubMed", "id": "29504210", "url": "https://pubmed.ncbi.nlm.nih.gov/29504210" } ], "uniprot_canonical_ac": "O23252-1" }, { "start_pos": 80, "end_pos": 80, "sequence_org": "T", "sequence_mut": "D", "comment": "Normal bolting time and increased resistance to potyviruses such as clover yellow vein virus (ClYVV), watermelon mosaic virus (WMV) and turnip mosaic virus (TuMV, including resistance-breaking strains TuMV-E116Q and TuMV-N163Y); when associated with D-81. In eIF4E1(R); normal bolting time and increased resistance to potyviruses such as ClYVV, WMV, TuMV (including resistance-breaking strains TuMV-E116Q and TuMV-N163Y), lettuce mosaic virus (LMV) and plum pox virus (PPV), and to polerovirus such as beet mild yellowing virus isolate USA (BWYV-USA); when associated with L-69; D-81; A-84; R-114 and K-176.", "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" }, { "database": "PubMed", "id": "30784179", "url": "https://pubmed.ncbi.nlm.nih.gov/30784179" }, { "database": "PubMed", "id": "29504210", "url": "https://pubmed.ncbi.nlm.nih.gov/29504210" } ], "uniprot_canonical_ac": "O23252-1" }, { "start_pos": 81, "end_pos": 81, "sequence_org": "S", "sequence_mut": "D", "comment": "Normal bolting time and increased resistance to potyviruses such as clover yellow vein virus (ClYVV), watermelon mosaic virus (WMV) and turnip mosaic virus (TuMV, including resistance-breaking strains TuMV-E116Q and TuMV-N163Y); when associated with D-80. In eIF4E1(R); normal bolting time and increased resistance to potyviruses such as ClYVV, WMV, TuMV (including resistance-breaking strains TuMV-E116Q and TuMV-N163Y), lettuce mosaic virus (LMV) and plum pox virus (PPV), and to polerovirus such as beet mild yellowing virus isolate USA (BWYV-USA); when associated with L-69; D-80; A-84; R-114 and K-176.", "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" }, { "database": "PubMed", "id": "30784179", "url": "https://pubmed.ncbi.nlm.nih.gov/30784179" }, { "database": "PubMed", "id": "29504210", "url": "https://pubmed.ncbi.nlm.nih.gov/29504210" } ], "uniprot_canonical_ac": "O23252-1" }, { "start_pos": 84, "end_pos": 84, "sequence_org": "S", "sequence_mut": "A", "comment": "Normal bolting time and partial resistance to potyviruses such as clover yellow vein virus (ClYVV). In eIF4E1(R); normal bolting time and increased resistance to potyviruses such as ClYVV, watermelon mosaic virus (WMV), turnip mosaic virus (TuMV, including resistance-breaking strains TuMV-E116Q and TuMV-N163Y), lettuce mosaic virus (LMV) and plum pox virus (PPV), and to polerovirus such as beet mild yellowing virus isolate USA (BWYV-USA); when associated with L-69; D-80; D-81; R-114 and K-176.", "evidence": [ { "database": "UniProtKB", "id": "O23252", "url": "https://www.uniprot.org/uniprotkb/O23252" }, { "database": "PubMed", "id": "30784179", "url": "https://pubmed.ncbi.nlm.nih.gov/30784179" }, { "database": "PubMed", "id": "29504210", "url": "https://pubmed.ncbi.nlm.nih.gov/29504210" } ], "uniprot_canonical_ac": "O23252-1" } ], "record_id": "pubmed.30784179", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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