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specific for degrading poly(A) tails of mammalian mRNA.", "journal": "The Journal of biological chemistry", "date": "1992", "authors": "Astrom J, Astrom A, Virtanen A", "reference": { "type": "PubMed", "id": "1355481", "url": "https://pubmed.ncbi.nlm.nih.gov/1355481" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14240-1", "protein_name": "Eukaryotic initiation factor 4A-II", "gene_name": "EIF4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60842-1", "protein_name": "Eukaryotic initiation factor 4A-I", "gene_name": "EIF4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H074-1", "protein_name": "Polyadenylate-binding protein-interacting protein 1", "gene_name": 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[] } ] }, { "title": "Conservation of the deadenylase activity of proteins of the Caf1 family in human.", "journal": "RNA", "date": "2005", "authors": "Bianchin C, Mauxion F, Sentis S, Seraphin B, Corbo L", "reference": { "type": "PubMed", "id": "15769875", "url": "https://pubmed.ncbi.nlm.nih.gov/15769875" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UFF9-1", "protein_name": "CCR4-NOT transcription complex subunit 8", "gene_name": "CNOT8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15769875", "abstract": "", "glycosylation": [], "mutagenesis": [], 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"protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78543-1", "protein_name": "Protein BTG2", "gene_name": "BTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT 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p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16160013", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Opposing polymerase-deadenylase activities regulate cytoplasmic polyadenylation.", "journal": "Molecular cell", "date": "2006", "authors": "Kim JH, Richter JD", "reference": { "type": "PubMed", "id": "17052452", "url": "https://pubmed.ncbi.nlm.nih.gov/17052452" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14240-1", "protein_name": "Eukaryotic initiation factor 4A-II", "gene_name": "EIF4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60842-1", "protein_name": "Eukaryotic initiation factor 4A-I", "gene_name": "EIF4A1", "tax_name": "Human" }, { 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"Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT transcription complex subunit 6-like", "gene_name": "CNOT6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A5-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95453-1", "protein_name": "Poly(A)-specific ribonuclease PARN", "gene_name": "PARN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UFF9-1", "protein_name": "CCR4-NOT transcription complex subunit 8", "gene_name": "CNOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ1-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23588-1", "protein_name": "Eukaryotic translation initiation factor 4B", "gene_name": "EIF4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q58A45-1", "protein_name": "PAN2-PAN3 deadenylation complex subunit PAN3", "gene_name": "PAN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VYS8-1", "protein_name": "Terminal uridylyltransferase 7", "gene_name": "TUT7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17052452", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 25 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RGC32, a novel p53-inducible gene, is located on centrosomes during mitosis and results in G2/M arrest.", "journal": "Oncogene", "date": "2007", "authors": "Saigusa K, Imoto I, Tanikawa C, Aoyagi M, Ohno K, Nakamura Y, Inazawa J", "reference": { "type": "PubMed", "id": "17146433", "url": "https://pubmed.ncbi.nlm.nih.gov/17146433" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B4-1", "protein_name": "Serine/threonine-protein kinase PLK3", "gene_name": "PLK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4X1-1", "protein_name": "Regulator of cell cycle RGCC", "gene_name": "RGCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92600-1", "protein_name": "CCR4-NOT transcription complex subunit 9", "gene_name": "CNOT9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0C2-1", "protein_name": "182 kDa tankyrase-1-binding protein", "gene_name": "TNKS1BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78543-1", "protein_name": "Protein BTG2", "gene_name": "BTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT transcription complex subunit 6-like", "gene_name": "CNOT6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A5-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UFF9-1", "protein_name": "CCR4-NOT transcription complex subunit 8", "gene_name": "CNOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ1-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM63-1", "protein_name": "Zinc finger protein PLAGL1", "gene_name": "PLAGL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYY3-1", "protein_name": "Serine/threonine-protein kinase PLK2", "gene_name": "PLK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30307-1", "protein_name": "M-phase inducer phosphatase 3", "gene_name": "CDC25C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17146433", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Poly(A) nuclease interacts with the C-terminal domain of polyadenylate-binding protein domain from poly(A)-binding protein.", "journal": "The Journal of biological chemistry", "date": "2007", "authors": "Siddiqui N, Mangus DA, Chang TC, Palermino JM, Shyu AB, Gehring K", "reference": { "type": "PubMed", "id": "17595167", "url": "https://pubmed.ncbi.nlm.nih.gov/17595167" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0C2-1", "protein_name": "182 kDa tankyrase-1-binding protein", "gene_name": "TNKS1BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q504Q3-1", "protein_name": "PAN2-PAN3 deadenylation complex catalytic subunit PAN2", "gene_name": "PAN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAX3-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "TUT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06730-1", "protein_name": "Eukaryotic translation initiation factor 4E", "gene_name": "EIF4E", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": 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"gene_name": "CNOT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23588-1", "protein_name": "Eukaryotic translation initiation factor 4B", "gene_name": "EIF4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q58A45-1", "protein_name": "PAN2-PAN3 deadenylation complex subunit PAN3", "gene_name": "PAN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VYS8-1", "protein_name": "Terminal uridylyltransferase 7", "gene_name": "TUT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36102-1", "protein_name": "PAN2-PAN3 deadenylation complex subunit PAN3", "gene_name": "PAN3", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 293, "end_pos": 293, "sequence_org": "F", "sequence_mut": "A", "comment": "Reduces interaction with polyadenylate-binding protein.", "evidence": [ { "database": "UniProtKB", "id": "Q58A45", "url": "https://www.uniprot.org/uniprotkb/Q58A45" }, { "database": "PubMed", "id": "18056425", "url": "https://pubmed.ncbi.nlm.nih.gov/18056425" }, { "database": "PubMed", "id": "17595167", "url": "https://pubmed.ncbi.nlm.nih.gov/17595167" } ], "uniprot_canonical_ac": "Q58A45-1" }, { "start_pos": 156, "end_pos": 156, "sequence_org": "F", "sequence_mut": "A", "comment": "Significantly decreases interaction with PAN1.", "evidence": [ { "database": "UniProtKB", "id": "P36102", "url": "https://www.uniprot.org/uniprotkb/P36102" }, { "database": "PubMed", "id": "17595167", "url": "https://pubmed.ncbi.nlm.nih.gov/17595167" } ], "uniprot_canonical_ac": "P36102-1" } ], "record_id": "pubmed.17595167", "abstract": "", 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"uniprot_canonical_ac": "P78543-1", "protein_name": "Protein BTG2", "gene_name": "BTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT transcription complex subunit 6-like", "gene_name": "CNOT6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A5-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UFF9-1", "protein_name": "CCR4-NOT transcription complex subunit 8", "gene_name": "CNOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ1-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM63-1", "protein_name": "Zinc finger protein PLAGL1", "gene_name": "PLAGL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYY3-1", "protein_name": "Serine/threonine-protein kinase PLK2", "gene_name": "PLK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30307-1", "protein_name": "M-phase inducer phosphatase 3", "gene_name": "CDC25C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18337750", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Deadenylation is prerequisite for P-body formation and mRNA decay in mammalian cells.", "journal": "The Journal of cell biology", "date": "2008", "authors": "Zheng D, Ezzeddine N, Chen CY, Zhu W, He X, Shyu AB", "reference": { "type": "PubMed", "id": "18625844", "url": "https://pubmed.ncbi.nlm.nih.gov/18625844" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14240-1", "protein_name": "Eukaryotic initiation factor 4A-II", "gene_name": "EIF4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q640Q5-5", "protein_name": "PAN2-PAN3 deadenylation complex subunit Pan3", "gene_name": "Pan3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P60842-1", "protein_name": "Eukaryotic initiation factor 4A-I", "gene_name": "EIF4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H074-1", "protein_name": "Polyadenylate-binding protein-interacting protein 1", "gene_name": "PAIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92600-1", "protein_name": "CCR4-NOT transcription complex subunit 9", "gene_name": "CNOT9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0C2-1", "protein_name": "182 kDa tankyrase-1-binding protein", "gene_name": "TNKS1BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q504Q3-1", "protein_name": "PAN2-PAN3 deadenylation complex catalytic subunit PAN2", "gene_name": "PAN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAX3-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "TUT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06730-1", "protein_name": "Eukaryotic translation initiation factor 4E", "gene_name": "EIF4E", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT transcription complex subunit 6-like", "gene_name": "CNOT6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A5-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95453-1", "protein_name": "Poly(A)-specific ribonuclease PARN", "gene_name": "PARN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UFF9-1", "protein_name": "CCR4-NOT transcription complex subunit 8", "gene_name": "CNOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ1-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BGF7-1", "protein_name": "PAN2-PAN3 deadenylation complex catalytic subunit Pan2", "gene_name": "Pan2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P23588-1", "protein_name": "Eukaryotic translation initiation factor 4B", "gene_name": "EIF4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q58A45-1", "protein_name": "PAN2-PAN3 deadenylation complex subunit PAN3", "gene_name": "PAN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VYS8-1", "protein_name": "Terminal uridylyltransferase 7", "gene_name": "TUT7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18625844", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 27 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis for the antiproliferative activity of the Tob-hCaf1 complex.", "journal": "The Journal of biological chemistry", "date": "2009", "authors": "Horiuchi M, Takeuchi K, Noda N, Muroya N, Suzuki T, Nakamura T, Kawamura-Tsuzuku J, Takahasi K, Yamamoto T, Inagaki F", "reference": { "type": "PubMed", "id": "19276069", "url": "https://pubmed.ncbi.nlm.nih.gov/19276069" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B4-1", "protein_name": "Serine/threonine-protein kinase PLK3", "gene_name": "PLK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4X1-1", "protein_name": "Regulator of cell cycle RGCC", "gene_name": "RGCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92600-1", "protein_name": "CCR4-NOT transcription complex subunit 9", "gene_name": "CNOT9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0C2-1", "protein_name": "182 kDa tankyrase-1-binding protein", "gene_name": "TNKS1BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78543-1", "protein_name": "Protein BTG2", "gene_name": "BTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT transcription complex subunit 6-like", "gene_name": "CNOT6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A5-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50616-1", "protein_name": "Protein Tob1", "gene_name": "TOB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UFF9-1", "protein_name": "CCR4-NOT transcription complex subunit 8", "gene_name": "CNOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ1-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM63-1", "protein_name": "Zinc finger protein PLAGL1", "gene_name": "PLAGL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYY3-1", "protein_name": "Serine/threonine-protein kinase PLK2", "gene_name": "PLK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30307-1", "protein_name": "M-phase inducer phosphatase 3", "gene_name": "CDC25C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 161, "end_pos": 161, "sequence_org": "D", "sequence_mut": "N", "comment": "Abolishes RNA deadenylase activity. 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J.", "date": "2009", "authors": "Lau NC, Kolkman A, van Schaik FM, Mulder KW, Pijnappel WW, Heck AJ, Timmers HT", "reference": { "type": "PubMed", "id": "19558367", "url": "https://pubmed.ncbi.nlm.nih.gov/19558367" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14240-1", "protein_name": "Eukaryotic initiation factor 4A-II", "gene_name": "EIF4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60842-1", "protein_name": "Eukaryotic initiation factor 4A-I", "gene_name": "EIF4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H074-1", "protein_name": "Polyadenylate-binding protein-interacting protein 1", "gene_name": "PAIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92600-1", "protein_name": "CCR4-NOT transcription complex subunit 9", "gene_name": "CNOT9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0C2-1", "protein_name": "182 kDa tankyrase-1-binding protein", "gene_name": "TNKS1BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q504Q3-1", "protein_name": "PAN2-PAN3 deadenylation complex catalytic subunit PAN2", "gene_name": "PAN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAX3-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "TUT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06730-1", "protein_name": "Eukaryotic translation initiation factor 4E", "gene_name": "EIF4E", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT transcription complex subunit 6-like", "gene_name": "CNOT6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A5-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95453-1", "protein_name": "Poly(A)-specific ribonuclease PARN", "gene_name": "PARN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UFF9-1", "protein_name": "CCR4-NOT transcription complex subunit 8", "gene_name": "CNOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ1-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23588-1", "protein_name": "Eukaryotic translation initiation factor 4B", "gene_name": "EIF4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q58A45-1", "protein_name": "PAN2-PAN3 deadenylation complex subunit PAN3", "gene_name": "PAN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VYS8-1", "protein_name": "Terminal uridylyltransferase 7", "gene_name": "TUT7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": 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"type": "PubMed", "id": "20352051", "url": "https://pubmed.ncbi.nlm.nih.gov/20352051" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B4-1", "protein_name": "Serine/threonine-protein kinase PLK3", "gene_name": "PLK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4X1-1", "protein_name": "Regulator of cell cycle RGCC", "gene_name": "RGCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92600-1", "protein_name": "CCR4-NOT transcription complex subunit 9", "gene_name": "CNOT9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0C2-1", "protein_name": "182 kDa tankyrase-1-binding protein", "gene_name": "TNKS1BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78543-1", "protein_name": "Protein BTG2", "gene_name": "BTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT 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Does not affect phosphorylation by PLK2.", "evidence": [ { "database": "UniProtKB", "id": "P06748", "url": "https://www.uniprot.org/uniprotkb/P06748" }, { "database": "PubMed", "id": "20352051", "url": "https://pubmed.ncbi.nlm.nih.gov/20352051" }, { "database": "PubMed", "id": "12058066", "url": "https://pubmed.ncbi.nlm.nih.gov/12058066" } ], "uniprot_canonical_ac": "P06748-1" }, { "start_pos": 4, "end_pos": 4, "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes phosphorylation by PLK2 and impairs centriole duplication.", "evidence": [ { "database": "UniProtKB", "id": "P06748", "url": "https://www.uniprot.org/uniprotkb/P06748" }, { "database": "PubMed", "id": "20352051", "url": "https://pubmed.ncbi.nlm.nih.gov/20352051" } ], "uniprot_canonical_ac": "P06748-1" }, { "start_pos": 4, "end_pos": 4, "sequence_org": "S", "sequence_mut": "D", "comment": "Mimicks phosphorylation state, inducing accumulation of centrioles.", "evidence": [ { "database": "UniProtKB", "id": "P06748", "url": "https://www.uniprot.org/uniprotkb/P06748" }, { "database": "PubMed", "id": "20352051", "url": "https://pubmed.ncbi.nlm.nih.gov/20352051" } ], "uniprot_canonical_ac": "P06748-1" }, { "start_pos": 4, "end_pos": 4, "sequence_org": "S", "sequence_mut": "E", "comment": "Mimicks phosphorylation state, inducing accumulation of centrioles.", "evidence": [ { "database": "UniProtKB", "id": "P06748", "url": "https://www.uniprot.org/uniprotkb/P06748" }, { "database": "PubMed", "id": "20352051", "url": "https://pubmed.ncbi.nlm.nih.gov/20352051" } ], "uniprot_canonical_ac": "P06748-1" }, { "start_pos": 95, "end_pos": 95, "sequence_org": "T", "sequence_mut": "A", "comment": "Does not affect phosphorylation by PLK2.", "evidence": [ { "database": "UniProtKB", "id": "P06748", "url": "https://www.uniprot.org/uniprotkb/P06748" }, { "database": "PubMed", "id": "20352051", "url": "https://pubmed.ncbi.nlm.nih.gov/20352051" } ], "uniprot_canonical_ac": "P06748-1" } ], "phosphorylation": [ { "start_pos": 4, "end_pos": 4, "kinase_uniprot_canonical_ac": "P53350-1", "kinase_gene_name": "PLK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P06748", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P06748" }, { "database": "PubMed", "id": "15190079", "url": "https://pubmed.ncbi.nlm.nih.gov/15190079" }, { "database": "PubMed", "id": "19413330", "url": "https://pubmed.ncbi.nlm.nih.gov/19413330" }, { "database": "PubMed", "id": "19651622", "url": "https://pubmed.ncbi.nlm.nih.gov/19651622" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "20352051", "url": "https://pubmed.ncbi.nlm.nih.gov/20352051" } ], "site_lbl": "Ser4", "uniprot_canonical_ac": "P06748-1" }, { "start_pos": 4, "end_pos": 4, "kinase_uniprot_canonical_ac": "Q9NYY3-1", "kinase_gene_name": "PLK2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P06748", "url": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PLK2 phosphorylation is critical for CPAP function in procentriole formation during the centrosome cycle.", "journal": "The EMBO journal", "date": "2010", "authors": "Chang J, Cizmecioglu O, Hoffmann I, Rhee K", "reference": { "type": "PubMed", "id": "20531387", "url": "https://pubmed.ncbi.nlm.nih.gov/20531387" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": 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"protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT transcription complex subunit 6-like", "gene_name": "CNOT6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A5-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 589, "end_pos": 589, "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes phosphorylation by PLK2 and procentriole formation; when associated with A-595.", "evidence": [ { "database": "UniProtKB", "id": "Q9HC77", "url": "https://www.uniprot.org/uniprotkb/Q9HC77" }, { "database": "PubMed", "id": "20531387", "url": "https://pubmed.ncbi.nlm.nih.gov/20531387" } ], "uniprot_canonical_ac": "Q9HC77-1" }, { "start_pos": 595, "end_pos": 595, "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes phosphorylation by PLK2 and procentriole formation; when associated with A-589.", "evidence": [ { "database": "UniProtKB", "id": "Q9HC77", "url": "https://www.uniprot.org/uniprotkb/Q9HC77" }, { "database": "PubMed", "id": "20531387", "url": "https://pubmed.ncbi.nlm.nih.gov/20531387" } ], "uniprot_canonical_ac": "Q9HC77-1" } ], "phosphorylation": [ { "start_pos": 589, "end_pos": 589, "kinase_uniprot_canonical_ac": "Q9NYY3-1", "kinase_gene_name": "PLK2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9HC77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9HC77" }, { "database": "PubMed", "id": "20531387", "url": "https://pubmed.ncbi.nlm.nih.gov/20531387" } ], "site_lbl": "Ser589", "uniprot_canonical_ac": "Q9HC77-1" }, { "start_pos": 589, "end_pos": 589, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PLK2", "evidence": [ { "database": "UniProtKB", "id": "Q9HC77", "url": "https://www.uniprot.org/uniprotkb/Q9HC77" }, { "database": "PRO", "id": "Q9HC77", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q9HC77" }, { "database": "iPTMnet", "id": "Q9HC77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9HC77" }, { "database": "PubMed", "id": "20531387", "url": "https://pubmed.ncbi.nlm.nih.gov/20531387" } ], "site_lbl": "Ser589", 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Translational repression by deadenylases.", "journal": "The Journal of biological chemistry", "date": "2010-09-10", "authors": "Cooke Amy, Prigge Andrew, Wickens Marvin", "reference": { "type": "PubMed", "id": "20634287", "url": "https://pubmed.ncbi.nlm.nih.gov/20634287" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20634287", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Anti-proliferative protein Tob negatively regulates CPEB3 target by recruiting Caf1 deadenylase.", "journal": "The EMBO journal", "date": "2011", "authors": "Hosoda N, Funakoshi Y, Hirasawa M, Yamagishi R, Asano Y, Miyagawa R, Ogami K, Tsujimoto M, Hoshino S", "reference": { "type": "PubMed", "id": "21336257", "url": "https://pubmed.ncbi.nlm.nih.gov/21336257" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8R5K6-1", "protein_name": "Protein Tob1", "gene_name": "Tob1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q8NE35-1", "protein_name": "Cytoplasmic polyadenylation element-binding protein 3", "gene_name": "CPEB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RY0-1", "protein_name": "Cytoplasmic polyadenylation element-binding protein 4", "gene_name": "CPEB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50616-1", "protein_name": "Protein Tob1", "gene_name": "TOB1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 161, "end_pos": 161, "sequence_org": "D", "sequence_mut": "N", "comment": "Abolishes RNA deadenylase activity. Drastically reduces the rate of deadenylation and decay of CBEP3-tethered mRNA.", "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" }, { "database": "PubMed", "id": "21336257", "url": "https://pubmed.ncbi.nlm.nih.gov/21336257" }, { "database": "PubMed", "id": "19276069", "url": "https://pubmed.ncbi.nlm.nih.gov/19276069" } ], "uniprot_canonical_ac": "Q9UIV1-1" } ], "record_id": "pubmed.21336257", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q92600-1", "protein_name": "CCR4-NOT transcription complex subunit 9", "gene_name": "CNOT9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0C2-1", "protein_name": "182 kDa tankyrase-1-binding protein", "gene_name": "TNKS1BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78543-1", "protein_name": "Protein BTG2", "gene_name": "BTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT transcription complex subunit 6-like", "gene_name": "CNOT6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A5-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UFF9-1", "protein_name": "CCR4-NOT transcription complex subunit 8", "gene_name": "CNOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ1-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM63-1", "protein_name": "Zinc finger protein PLAGL1", "gene_name": "PLAGL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYY3-1", "protein_name": "Serine/threonine-protein kinase PLK2", "gene_name": "PLK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30307-1", "protein_name": "M-phase inducer phosphatase 3", "gene_name": "CDC25C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22252318", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The structural basis for the interaction between the CAF1 nuclease and the NOT1 scaffold of the human CCR4-NOT deadenylase complex.", "journal": "Nucleic acids research", "date": "2012", "authors": "Petit AP, Wohlbold L, Bawankar P, Huntzinger E, Schmidt S, Izaurralde E, Weichenrieder O", "reference": { "type": "PubMed", "id": "22977175", "url": "https://pubmed.ncbi.nlm.nih.gov/22977175" }, "referenced_glycans": [], 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{ "start_pos": 141, "end_pos": 141, "sequence_org": "M", "sequence_mut": "R", "comment": "Abolishes interaction with CNOT1.", "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" }, { "database": "PubMed", "id": "22977175", "url": "https://pubmed.ncbi.nlm.nih.gov/22977175" } ], "uniprot_canonical_ac": "Q9UIV1-1" }, { "start_pos": 142, "end_pos": 142, "sequence_org": "T", "sequence_mut": "Y", "comment": "Abolishes interaction with CNOT1; when associated with K-138 and K-149.", "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" }, { "database": "PubMed", "id": "22977175", "url": "https://pubmed.ncbi.nlm.nih.gov/22977175" } ], "uniprot_canonical_ac": "Q9UIV1-1" }, { "start_pos": 149, "end_pos": 149, "sequence_org": "E", "sequence_mut": "K", "comment": "Abolishes interaction with CNOT1; when associated with K-138 and Y-142.", "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", 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"tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT transcription complex subunit 6-like", "gene_name": "CNOT6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A5-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95453-1", "protein_name": "Poly(A)-specific ribonuclease PARN", "gene_name": 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by Zac1, a novel zinc finger protein expressed in the pituitary gland and the brain.", "journal": "The EMBO journal", "date": "1997", "authors": "Spengler D, Villalba M, Hoffmann A, Pantaloni C, Houssami S, Bockaert J, Journot L", "reference": { "type": "PubMed", "id": "9184226", "url": "https://pubmed.ncbi.nlm.nih.gov/9184226" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B4-1", "protein_name": "Serine/threonine-protein kinase PLK3", "gene_name": "PLK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4X1-1", "protein_name": "Regulator of cell cycle RGCC", "gene_name": "RGCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92600-1", "protein_name": "CCR4-NOT transcription complex subunit 9", "gene_name": "CNOT9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0C2-1", "protein_name": "182 kDa tankyrase-1-binding protein", "gene_name": "TNKS1BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78543-1", "protein_name": "Protein BTG2", "gene_name": "BTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT transcription complex subunit 6-like", "gene_name": "CNOT6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A5-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UFF9-1", "protein_name": "CCR4-NOT transcription complex subunit 8", "gene_name": "CNOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ1-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM63-1", "protein_name": "Zinc finger protein PLAGL1", "gene_name": "PLAGL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYY3-1", "protein_name": "Serine/threonine-protein kinase PLK2", "gene_name": "PLK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30307-1", "protein_name": "M-phase inducer phosphatase 3", "gene_name": "CDC25C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9184226", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"uniprot_canonical_ac": "Q9H4B4-1", "protein_name": "Serine/threonine-protein kinase PLK3", "gene_name": "PLK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4X1-1", "protein_name": "Regulator of cell cycle RGCC", "gene_name": "RGCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92600-1", "protein_name": "CCR4-NOT transcription complex subunit 9", "gene_name": "CNOT9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0C2-1", "protein_name": "182 kDa tankyrase-1-binding protein", "gene_name": "TNKS1BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78543-1", "protein_name": "Protein BTG2", "gene_name": "BTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT transcription complex subunit 6-like", "gene_name": "CNOT6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A5-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UFF9-1", "protein_name": "CCR4-NOT transcription complex subunit 8", "gene_name": "CNOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ1-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM63-1", "protein_name": "Zinc finger protein PLAGL1", "gene_name": "PLAGL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYY3-1", "protein_name": "Serine/threonine-protein kinase PLK2", "gene_name": "PLK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30307-1", "protein_name": "M-phase inducer phosphatase 3", "gene_name": "CDC25C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9671765", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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chemistry", "date": "1998", "authors": "Rouault JP, Prevot D, Berthet C, Birot AM, Billaud M, Magaud JP, Corbo L", "reference": { "type": "PubMed", "id": "9712883", "url": "https://pubmed.ncbi.nlm.nih.gov/9712883" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B4-1", "protein_name": "Serine/threonine-protein kinase PLK3", "gene_name": "PLK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4X1-1", "protein_name": "Regulator of cell cycle RGCC", "gene_name": "RGCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92600-1", "protein_name": "CCR4-NOT transcription complex subunit 9", "gene_name": "CNOT9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0C2-1", "protein_name": "182 kDa tankyrase-1-binding protein", "gene_name": "TNKS1BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78543-1", "protein_name": "Protein BTG2", "gene_name": "BTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT transcription complex subunit 6-like", "gene_name": "CNOT6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A5-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62324-1", "protein_name": "Protein BTG1", "gene_name": "BTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UFF9-1", "protein_name": "CCR4-NOT transcription complex subunit 8", "gene_name": "CNOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ1-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UM63-1", "protein_name": "Zinc finger protein PLAGL1", "gene_name": "PLAGL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYY3-1", "protein_name": "Serine/threonine-protein kinase PLK2", "gene_name": "PLK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30307-1", "protein_name": "M-phase inducer phosphatase 3", "gene_name": "CDC25C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q60809-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "Cnot7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9712883", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human carbon catabolite repressor protein (CCR4)-associative factor 1: cloning, expression and characterization of its interaction with the B-cell translocation protein BTG1.", "journal": "Biochem. J.", "date": "1998", "authors": "Bogdan JA, Adams-Burton C, Pedicord DL, Sukovich DA, Benfield PA, Corjay MH, Stoltenborg JK, Dicker IB", "reference": { "type": "PubMed", "id": "9820826", "url": "https://pubmed.ncbi.nlm.nih.gov/9820826" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62324-1", "protein_name": "Protein BTG1", "gene_name": "BTG1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UIV1", "url": "https://www.uniprot.org/uniprotkb/Q9UIV1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 158, "end_pos": 158, "kinase_uniprot_canonical_ac": "P20248-1", "kinase_gene_name": "CCNA2", "residue": "Thr", "comment": "", "evidence": [ { 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"gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61086-1", "protein_name": "Ubiquitin-conjugating enzyme E2 K", "gene_name": "UBE2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22314-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 1", "gene_name": "UBA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H832-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Z", "gene_name": "UBE2Z", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVT1-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 6", "gene_name": "UBA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969T4-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E3", "gene_name": "UBE2E3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15374-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase isozyme L3", "gene_name": "UCHL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49427-1", "protein_name": "Ubiquitin-conjugating enzyme E2 R1", "gene_name": "CDC34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62256-1", "protein_name": "Ubiquitin-conjugating enzyme E2 H", "gene_name": "UBE2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96B02-1", "protein_name": "Ubiquitin-conjugating enzyme E2 W", "gene_name": "UBE2W", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16763-1", "protein_name": "Ubiquitin-conjugating enzyme E2 S", "gene_name": "UBE2S", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00762-1", "protein_name": "Ubiquitin-conjugating enzyme E2 C", "gene_name": "UBE2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVN8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Q2", "gene_name": "UBE2Q2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPD8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 T", "gene_name": "UBE2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62253-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G1", "gene_name": "UBE2G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BN8-1", "protein_name": "Ubiquitin thioesterase otulin", "gene_name": "OTULIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45974-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 5", "gene_name": "USP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P60604", "url": "https://www.uniprot.org/uniprotkb/P60604" } ], "common_name": "Human", "glygen_name": 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F", "date": "2006", "authors": "Arai Ryoichi, Yoshikawa Seiko, Murayama Kazutaka, Imai Yuzuru, Takahashi Ryosuke, Shirouzu Mikako, Yokoyama Shigeyuki", "reference": { "type": "PubMed", "id": "16582478", "url": "https://pubmed.ncbi.nlm.nih.gov/16582478" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60604-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G2", "gene_name": "UBE2G2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P60604", "url": "https://www.uniprot.org/uniprotkb/P60604" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16582478", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "UBE1L2, a novel E1 enzyme specific for ubiquitin.", "journal": "The Journal of biological chemistry", "date": "2007", "authors": "Pelzer C, Kassner I, Matentzoglu K, Singh RK, Wollscheid HP, Scheffner M, Schmidtke G, Groettrup M", "reference": { "type": "PubMed", "id": "17580310", "url": "https://pubmed.ncbi.nlm.nih.gov/17580310" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60604-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G2", "gene_name": "UBE2G2", 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dual E1 activation systems for ubiquitin differentially regulate E2 enzyme charging.", "journal": "Nature", "date": "2007", "authors": "Jin J, Li X, Gygi SP, Harper JW", "reference": { "type": "PubMed", "id": "17597759", "url": "https://pubmed.ncbi.nlm.nih.gov/17597759" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60604-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G2", "gene_name": "UBE2G2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q712K3-1", "protein_name": "Ubiquitin-conjugating enzyme E2 R2", "gene_name": "UBE2R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61086-1", "protein_name": "Ubiquitin-conjugating enzyme E2 K", "gene_name": "UBE2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22314-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 1", "gene_name": "UBA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H832-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Z", "gene_name": "UBE2Z", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVT1-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 6", "gene_name": "UBA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969T4-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E3", "gene_name": "UBE2E3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15374-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase isozyme L3", "gene_name": "UCHL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49427-1", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The E2 ubiquitin-conjugating enzymes direct polyubiquitination to preferred lysines.", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "David Y, Ziv T, Admon A, Navon A", "reference": { "type": "PubMed", "id": "20061386", "url": "https://pubmed.ncbi.nlm.nih.gov/20061386" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60604-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G2", "gene_name": "UBE2G2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q712K3-1", "protein_name": "Ubiquitin-conjugating enzyme E2 R2", "gene_name": "UBE2R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61086-1", "protein_name": "Ubiquitin-conjugating enzyme E2 K", "gene_name": "UBE2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969T4-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E3", "gene_name": "UBE2E3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LR5-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E2", "gene_name": "UBE2E2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49427-1", "protein_name": "Ubiquitin-conjugating enzyme E2 R1", "gene_name": "CDC34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62256-1", "protein_name": "Ubiquitin-conjugating enzyme E2 H", "gene_name": "UBE2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96B02-1", "protein_name": "Ubiquitin-conjugating enzyme E2 W", "gene_name": "UBE2W", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16763-1", "protein_name": "Ubiquitin-conjugating enzyme E2 S", "gene_name": "UBE2S", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00762-1", "protein_name": "Ubiquitin-conjugating enzyme E2 C", "gene_name": "UBE2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVN8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Q2", "gene_name": "UBE2Q2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating 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"P60604", "url": "https://www.uniprot.org/uniprotkb/P60604" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20061386", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 25 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ancient ubiquitous protein 1 (AUP1) localizes to lipid droplets and binds the E2 ubiquitin conjugase G2 (Ube2g2) via its G2 binding region.", "journal": "J. Biol. Chem.", "date": "2011", "authors": "Spandl J, Lohmann D, Kuerschner L, Moessinger C, Thiele C", "reference": { "type": "PubMed", "id": "21127063", "url": "https://pubmed.ncbi.nlm.nih.gov/21127063" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60604-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G2", "gene_name": "UBE2G2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y679-2", "protein_name": "Lipid droplet-regulating VLDL assembly factor AUP1", "gene_name": "AUP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P60604", "url": "https://www.uniprot.org/uniprotkb/P60604" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 397, "end_pos": 402, "sequence_org": "ARRRFT", "sequence_mut": "EGREDA", "comment": "Abolishes interaction with UBE2G2.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y679", "url": "https://www.uniprot.org/uniprotkb/Q9Y679" }, { "database": "PubMed", "id": "21127063", "url": "https://pubmed.ncbi.nlm.nih.gov/21127063" } ], "uniprot_canonical_ac": "Q9Y679-2" } ], "record_id": "pubmed.21127063", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dual role of ancient ubiquitous protein 1 (AUP1) in lipid droplet accumulation and endoplasmic reticulum (ER) protein quality control.", "journal": "J. Biol. Chem.", "date": "2011", "authors": "Klemm EJ, Spooner E, Ploegh HL", "reference": { "type": "PubMed", "id": "21857022", "url": "https://pubmed.ncbi.nlm.nih.gov/21857022" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60604-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G2", "gene_name": "UBE2G2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y679-2", "protein_name": "Lipid droplet-regulating VLDL assembly factor AUP1", "gene_name": "AUP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P60604", "url": "https://www.uniprot.org/uniprotkb/P60604" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 306, "end_pos": 308, "sequence_org": "EVL", "sequence_mut": "KAA", "comment": "Reduced interaction with ER quality control machinery and misfolded substrates; when associated with 333-L-L-334 Del.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y679", "url": "https://www.uniprot.org/uniprotkb/Q9Y679" }, { "database": "PubMed", "id": "21857022", "url": "https://pubmed.ncbi.nlm.nih.gov/21857022" } ], "uniprot_canonical_ac": "Q9Y679-2" }, { "start_pos": 333, "end_pos": 334, "sequence_org": "LL", "sequence_mut": "", "comment": "Reduced interaction with ER quality control machinery and misfolded substrates; when associated with 306-K--A-308.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y679", "url": "https://www.uniprot.org/uniprotkb/Q9Y679" }, { "database": "PubMed", "id": "21857022", "url": "https://pubmed.ncbi.nlm.nih.gov/21857022" } ], "uniprot_canonical_ac": "Q9Y679-2" }, { "start_pos": 96, "end_pos": 96, "sequence_org": "H", "sequence_mut": "A", "comment": "Reduced formation of lipid droplets.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y679", "url": "https://www.uniprot.org/uniprotkb/Q9Y679" }, { "database": "PubMed", "id": "21857022", "url": "https://pubmed.ncbi.nlm.nih.gov/21857022" } ], "uniprot_canonical_ac": "Q9Y679-2" } ], "record_id": "pubmed.21857022", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "STT3B-dependent posttranslational N-glycosylation as a surveillance system for secretory protein.", "journal": "Molecular cell", "date": "2012", "authors": "Sato T, Sako Y, Sho M, Momohara M, Suico MA, Shuto T, Nishitoh H, Okiyoneda T, Kokame K, Kaneko M, Taura M, Miyata M, Chosa K, Koga T, Morino-Koga S, Wada I, Kai H", "reference": { "type": "PubMed", "id": "22607976", "url": "https://pubmed.ncbi.nlm.nih.gov/22607976" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60604-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G2", "gene_name": "UBE2G2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q80-1", "protein_name": "Derlin-3", "gene_name": "DERL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86TM6-1", "protein_name": "E3 ubiquitin-protein ligase synoviolin", "gene_name": "SYVN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCJ2-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B", "gene_name": "STT3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": 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"taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P60604", "url": "https://www.uniprot.org/uniprotkb/P60604" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28743740", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "A structurally conserved site in AUP1 binds the E2 enzyme UBE2G2 and is essential for ER-associated degradation.", "journal": "PLoS biology", "date": "2021", "authors": "Smith CE, Tsai YC, Liang YH, Khago D, Mariano J, Li J, Tarasov SG, Gergel E, Tsai B, Villaneuva M, Clapp ME, Magidson V, Chari R, Byrd RA, Ji X, Weissman AM", "reference": { "type": "PubMed", "id": "34879065", "url": "https://pubmed.ncbi.nlm.nih.gov/34879065" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60604-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G2", "gene_name": "UBE2G2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P60604", "url": "https://www.uniprot.org/uniprotkb/P60604" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34879065", "abstract": "", "glycosylation": [], "mutagenesis": [], 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Robert Jan, Wiertz Emmanuel J H J", "reference": { "type": "PubMed", "id": "38787820", "url": "https://pubmed.ncbi.nlm.nih.gov/38787820" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60604-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G2", "gene_name": "UBE2G2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P60604", "url": "https://www.uniprot.org/uniprotkb/P60604" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38787820", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ubiquitin-activating enzyme. Mechanism and role in protein-ubiquitin conjugation.", "journal": "The Journal of biological chemistry", "date": "1982", "authors": "Haas AL, Warms JV, Hershko A, Rose IA", "reference": { "type": "PubMed", "id": "6277905", "url": "https://pubmed.ncbi.nlm.nih.gov/6277905" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60604-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G2", "gene_name": "UBE2G2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q712K3-1", "protein_name": "Ubiquitin-conjugating enzyme E2 R2", "gene_name": "UBE2R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61086-1", "protein_name": "Ubiquitin-conjugating enzyme E2 K", "gene_name": "UBE2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22314-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 1", "gene_name": "UBA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H832-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Z", "gene_name": "UBE2Z", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVT1-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 6", "gene_name": "UBA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969T4-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E3", "gene_name": "UBE2E3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15374-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase isozyme L3", "gene_name": "UCHL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49427-1", "protein_name": "Ubiquitin-conjugating enzyme E2 R1", "gene_name": "CDC34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62256-1", "protein_name": "Ubiquitin-conjugating enzyme E2 H", "gene_name": "UBE2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96B02-1", "protein_name": "Ubiquitin-conjugating enzyme E2 W", "gene_name": "UBE2W", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16763-1", "protein_name": "Ubiquitin-conjugating enzyme E2 S", "gene_name": "UBE2S", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00762-1", "protein_name": "Ubiquitin-conjugating enzyme E2 C", "gene_name": "UBE2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVN8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Q2", "gene_name": "UBE2Q2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPD8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 T", "gene_name": "UBE2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62253-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G1", "gene_name": "UBE2G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BN8-1", "protein_name": "Ubiquitin thioesterase otulin", "gene_name": "OTULIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45974-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 5", "gene_name": "USP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P60604", "url": "https://www.uniprot.org/uniprotkb/P60604" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.6277905", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 30 } ], "sort_fields": [ 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Resolution, affinity purification, and role in protein breakdown.", "journal": "The Journal of biological chemistry", "date": "1983", "authors": "Hershko A, Heller H, Elias S, Ciechanover A", "reference": { "type": "PubMed", "id": "6305978", "url": "https://pubmed.ncbi.nlm.nih.gov/6305978" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P60604-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G2", "gene_name": "UBE2G2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q712K3-1", "protein_name": "Ubiquitin-conjugating enzyme E2 R2", "gene_name": "UBE2R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61086-1", "protein_name": "Ubiquitin-conjugating enzyme E2 K", "gene_name": "UBE2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22314-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 1", "gene_name": "UBA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H832-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Z", "gene_name": "UBE2Z", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVT1-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 6", "gene_name": "UBA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969T4-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E3", "gene_name": "UBE2E3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15374-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase isozyme L3", "gene_name": "UCHL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49427-1", "protein_name": "Ubiquitin-conjugating enzyme E2 R1", "gene_name": "CDC34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62256-1", "protein_name": "Ubiquitin-conjugating enzyme E2 H", "gene_name": "UBE2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96B02-1", "protein_name": "Ubiquitin-conjugating enzyme E2 W", "gene_name": "UBE2W", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16763-1", "protein_name": "Ubiquitin-conjugating enzyme E2 S", "gene_name": "UBE2S", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00762-1", "protein_name": "Ubiquitin-conjugating enzyme E2 C", "gene_name": "UBE2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVN8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Q2", "gene_name": "UBE2Q2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPD8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 T", "gene_name": "UBE2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62253-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G1", "gene_name": "UBE2G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BN8-1", "protein_name": "Ubiquitin thioesterase otulin", "gene_name": "OTULIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45974-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 5", "gene_name": "USP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P60604", "url": "https://www.uniprot.org/uniprotkb/P60604" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.6305978", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 30 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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E2 G2", "gene_name": "UBE2G2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q712K3-1", "protein_name": "Ubiquitin-conjugating enzyme E2 R2", "gene_name": "UBE2R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61086-1", "protein_name": "Ubiquitin-conjugating enzyme E2 K", "gene_name": "UBE2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22314-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 1", "gene_name": "UBA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H832-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Z", "gene_name": "UBE2Z", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVT1-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 6", "gene_name": "UBA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969T4-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E3", "gene_name": 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{ "uniprot_canonical_ac": "O00762-1", "protein_name": "Ubiquitin-conjugating enzyme E2 C", "gene_name": "UBE2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVN8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Q2", "gene_name": "UBE2Q2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPD8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 T", "gene_name": "UBE2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62253-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G1", "gene_name": "UBE2G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BN8-1", "protein_name": "Ubiquitin thioesterase otulin", "gene_name": "OTULIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45974-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 5", "gene_name": "USP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P60604", "url": "https://www.uniprot.org/uniprotkb/P60604" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7851534", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 30 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "uniprot_canonical_ac": "Q16763-1", "protein_name": "Ubiquitin-conjugating enzyme E2 S", "gene_name": "UBE2S", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00762-1", "protein_name": "Ubiquitin-conjugating enzyme E2 C", "gene_name": "UBE2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVN8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Q2", "gene_name": "UBE2Q2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51965-1", "protein_name": "Ubiquitin-conjugating enzyme E2 E1", "gene_name": "UBE2E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49459-1", "protein_name": "Ubiquitin-conjugating enzyme E2 A", "gene_name": "UBE2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPD8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 T", "gene_name": "UBE2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63146-1", "protein_name": "Ubiquitin-conjugating enzyme E2 B", "gene_name": "UBE2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62253-1", "protein_name": "Ubiquitin-conjugating enzyme E2 G1", "gene_name": "UBE2G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BN8-1", "protein_name": "Ubiquitin thioesterase otulin", "gene_name": "OTULIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45974-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 5", "gene_name": "USP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein 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Cell Biol.", "date": "1999", "authors": "Page LJ, Sowerby PJ, Lui WW, Robinson MS", "reference": { "type": "PubMed", "id": "10477754", "url": "https://pubmed.ncbi.nlm.nih.gov/10477754" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UMZ2-1", "protein_name": "Synergin gamma", "gene_name": "SYNRG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JKC9-1", "protein_name": "Synergin gamma", "gene_name": "Synrg", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9R0Z7-1", "protein_name": "Alpha- and gamma-adaptin-binding protein p34", "gene_name": "Aagab", "tax_name": "Rat" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UMZ2", "url": "https://www.uniprot.org/uniprotkb/Q9UMZ2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10477754", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Adaptor gamma ear homology domain conserved in gamma-adaptin and GGA proteins that interact with gamma-synergin.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2000", "authors": "Takatsu H, Yoshino K, Nakayama K", "reference": { "type": "PubMed", "id": "10814529", "url": "https://pubmed.ncbi.nlm.nih.gov/10814529" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UMZ2-1", "protein_name": "Synergin gamma", "gene_name": "SYNRG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY5-1", "protein_name": "ADP-ribosylation factor-binding protein GGA1", "gene_name": "GGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ52-1", "protein_name": "ADP-ribosylation factor-binding protein GGA3", "gene_name": "GGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY4-1", "protein_name": "ADP-ribosylation factor-binding protein GGA2", "gene_name": "GGA2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UMZ2", "url": "https://www.uniprot.org/uniprotkb/Q9UMZ2" } ], "common_name": "Human", "glygen_name": "Human", 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& development", "date": "2022", "authors": "Ayaz A, Uzunhan TA, Aydin K", "reference": { "type": "PubMed", "id": "35090779", "url": "https://pubmed.ncbi.nlm.nih.gov/35090779" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UMZ2-1", "protein_name": "Synergin gamma", "gene_name": "SYNRG", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UMZ2", "url": "https://www.uniprot.org/uniprotkb/Q9UMZ2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35090779", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "hnulp1, a basic helix-loop-helix protein with a novel transcriptional repressive domain, inhibits transcriptional activity of serum response factor.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2006", "authors": "Cai Z, Wang Y, Yu W, Xiao J, Li Y, Liu L, Zhu C, Tan K, Deng Y, Yuan W, Liu M, Wu X", "reference": { "type": "PubMed", "id": "16574069", "url": "https://pubmed.ncbi.nlm.nih.gov/16574069" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQ70-1", "protein_name": "Ribosome quality control complex subunit TCF25", "gene_name": "TCF25", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQ70", "url": "https://www.uniprot.org/uniprotkb/Q9BQ70" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16574069", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nuclear localized protein-1 (Nulp1) increases cell death of human osteosarcoma cells and binds the X-linked inhibitor of apoptosis protein.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2008", "authors": "Steen H, Lindholm D", "reference": { "type": "PubMed", "id": "18068114", "url": "https://pubmed.ncbi.nlm.nih.gov/18068114" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BQ70-1", "protein_name": "Ribosome quality control complex subunit TCF25", "gene_name": "TCF25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98170-1", "protein_name": "E3 ubiquitin-protein ligase XIAP", "gene_name": "XIAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8R3L2-1", "protein_name": "Ribosome quality control complex subunit TCF25", "gene_name": "Tcf25", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BQ70", "url": "https://www.uniprot.org/uniprotkb/Q9BQ70" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18068114", "abstract": "", "glycosylation": [], "mutagenesis": [], 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NULP1 Alleviates Cardiac Hypertrophy by Suppressing NFAT3 Transcriptional Activity.", "journal": "J. 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"evidence": [ { "database": "UniProtKB", "id": "Q08AM6", "url": "https://www.uniprot.org/uniprotkb/Q08AM6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10567352", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 19 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 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"The isolation and characterization of a cDNA encoding phospholipid-specific inositol polyphosphate 5-phosphatase.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Kisseleva MV, Wilson MP, Majerus PW", "reference": { "type": "PubMed", "id": "10764818", "url": "https://pubmed.ncbi.nlm.nih.gov/10764818" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08AM6-1", "protein_name": "Protein VAC14 homolog", "gene_name": "VAC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84077-1", "protein_name": "ADP-ribosylation factor 1", "gene_name": "ARF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92835-1", "protein_name": "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1", "gene_name": "INPP5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99570-1", "protein_name": "Phosphoinositide 3-kinase regulatory subunit 4", "gene_name": "PIK3R4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75747-1", 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phosphatase catalytic subunit associated with the 3-phosphatase adapter protein, 3-PAP.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2003", "authors": "Nandurkar HH, Layton M, Laporte J, Selan C, Corcoran L, Caldwell KK, Mochizuki Y, Majerus PW, Mitchell CA", "reference": { "type": "PubMed", "id": "12847286", "url": "https://pubmed.ncbi.nlm.nih.gov/12847286" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08AM6-1", "protein_name": "Protein VAC14 homolog", "gene_name": "VAC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYA4-1", "protein_name": "Phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4", "gene_name": "MTMR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0I1-1", "protein_name": "Myotubularin-related protein 12", "gene_name": "MTMR12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99570-1", "protein_name": "Phosphoinositide 3-kinase regulatory subunit 4", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "The human phosphatidylinositol phosphatase SAC1 interacts with the coatomer I complex.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Rohde HM, Cheong FY, Konrad G, Paiha K, Mayinger P, Boehmelt G", "reference": { "type": "PubMed", "id": "14527956", "url": "https://pubmed.ncbi.nlm.nih.gov/14527956" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08AM6-1", "protein_name": "Protein VAC14 homolog", "gene_name": "VAC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84077-1", "protein_name": "ADP-ribosylation factor 1", "gene_name": "ARF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99570-1", "protein_name": "Phosphoinositide 3-kinase regulatory subunit 4", "gene_name": "PIK3R4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95248-1", "protein_name": "Myotubularin-related protein 5", "gene_name": "SBF1", "tax_name": "Human" }, { "uniprot_canonical_ac": 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promotes centronuclear myopathy in zebrafish.", "journal": "PLoS genetics", "date": "2013", "authors": "Gupta VA, Hnia K, Smith LL, Gundry SR, McIntire JE, Shimazu J, Bass JR, Talbot EA, Amoasii L, Goldman NE, Laporte J, Beggs AH", "reference": { "type": "PubMed", "id": "23818870", "url": "https://pubmed.ncbi.nlm.nih.gov/23818870" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08AM6-1", "protein_name": "Protein VAC14 homolog", "gene_name": "VAC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYA4-1", "protein_name": "Phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4", "gene_name": "MTMR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0I1-1", "protein_name": "Myotubularin-related protein 12", "gene_name": "MTMR12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q80TA6-1", "protein_name": "Myotubularin-related protein 12", "gene_name": "Mtmr12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2BGG1-1", "protein_name": 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Acta", "date": "1996", "authors": "Mireskandari A, Reid RL, Kashanchi F, Dittmer J, Li WB, Brady JN", "reference": { "type": "PubMed", "id": "8611628", "url": "https://pubmed.ncbi.nlm.nih.gov/8611628" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08AM6-1", "protein_name": "Protein VAC14 homolog", "gene_name": "VAC14", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q08AM6", "url": "https://www.uniprot.org/uniprotkb/Q08AM6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8611628", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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rapid publication of reports on genes and genomes", "date": "1997", "authors": "Suzuki K, Hirano H, Okutomi K, Suzuki M, Kuga Y, Fujiwara T, Kanemoto N, Isono K, Horie M", "reference": { "type": "PubMed", "id": "9405935", "url": "https://pubmed.ncbi.nlm.nih.gov/9405935" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08AM6-1", "protein_name": "Protein VAC14 homolog", "gene_name": "VAC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84077-1", "protein_name": "ADP-ribosylation factor 1", "gene_name": "ARF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99570-1", "protein_name": "Phosphoinositide 3-kinase regulatory subunit 4", "gene_name": "PIK3R4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75747-1", "protein_name": "Phosphatidylinositol 3-kinase C2 domain-containing subunit gamma", "gene_name": "PIK3C2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00443-1", "protein_name": "Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha", "gene_name": "PIK3C2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42356-1", "protein_name": "Phosphatidylinositol 4-kinase alpha", "gene_name": "PI4KA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTU6-1", "protein_name": "Phosphatidylinositol 4-kinase type 2-alpha", "gene_name": "PI4K2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCG2-1", "protein_name": "Phosphatidylinositol 4-kinase type 2-beta", "gene_name": "PI4K2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61204-1", "protein_name": "ADP-ribosylation factor 3", "gene_name": "ARF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01968-1", "protein_name": "Inositol polyphosphate 5-phosphatase OCRL", "gene_name": "OCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NTJ5-1", "protein_name": "Phosphatidylinositol-3-phosphatase SAC1", "gene_name": "SACM1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92562-1", "protein_name": "Polyphosphoinositide 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sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q08AM6", "url": "https://www.uniprot.org/uniprotkb/Q08AM6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9405935", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "cDNA cloning of a third human C2-domain-containing class II phosphoinositide 3-kinase, PI3K-C2gamma, and chromosomal assignment of this gene (PIK3C2G) to 12p12.", "journal": "Genomics", "date": "1998", "authors": "Rozycka M, Lu YJ, Brown RA, Lau MR, Shipley JM, Fry MJ", "reference": { "type": "PubMed", "id": "9878262", "url": "https://pubmed.ncbi.nlm.nih.gov/9878262" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q08AM6-1", "protein_name": "Protein VAC14 homolog", "gene_name": "VAC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84077-1", "protein_name": "ADP-ribosylation factor 1", "gene_name": "ARF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99570-1", "protein_name": "Phosphoinositide 3-kinase regulatory subunit 4", "gene_name": "PIK3R4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75747-1", "protein_name": "Phosphatidylinositol 3-kinase C2 domain-containing subunit gamma", "gene_name": "PIK3C2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00443-1", "protein_name": "Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha", "gene_name": "PIK3C2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42356-1", "protein_name": "Phosphatidylinositol 4-kinase alpha", "gene_name": "PI4KA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTU6-1", "protein_name": "Phosphatidylinositol 4-kinase type 2-alpha", "gene_name": "PI4K2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCG2-1", "protein_name": "Phosphatidylinositol 4-kinase type 2-beta", "gene_name": "PI4K2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61204-1", "protein_name": "ADP-ribosylation factor 3", "gene_name": "ARF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01968-1", "protein_name": "Inositol polyphosphate 5-phosphatase OCRL", "gene_name": "OCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NTJ5-1", "protein_name": "Phosphatidylinositol-3-phosphatase SAC1", "gene_name": "SACM1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92562-1", "protein_name": "Polyphosphoinositide phosphatase", "gene_name": "FIG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2I7-1", "protein_name": "1-phosphatidylinositol 3-phosphate 5-kinase", "gene_name": "PIKFYVE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBF8-1", "protein_name": "Phosphatidylinositol 4-kinase beta", "gene_name": "PI4KB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEB9-1", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "PIK3C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56180-1", "protein_name": "Putative tyrosine-protein phosphatase TPTE", "gene_name": "TPTE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRR6-1", "protein_name": "Phosphatidylinositol polyphosphate 5-phosphatase type IV", "gene_name": "INPP5E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6XPS3-1", "protein_name": "Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2", "gene_name": "TPTE2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q08AM6", "url": "https://www.uniprot.org/uniprotkb/Q08AM6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9878262", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of LUC7L2 and U1 snRNP subunits shifts energy metabolism from glycolysis to OXPHOS.", "journal": "Molecular cell", "date": "2021", "authors": "Jourdain AA, Begg BE, Mick E, Shah H, Calvo SE, Skinner OS, Sharma R, Blue SM, Yeo GW, Burge CB, Mootha VK", "reference": { "type": "PubMed", "id": "33852893", "url": "https://pubmed.ncbi.nlm.nih.gov/33852893" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y383-1", "protein_name": "Putative RNA-binding protein Luc7-like 2", "gene_name": "LUC7L2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y383", "url": "https://www.uniprot.org/uniprotkb/Q9Y383" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33852893", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Boming, Zeng Tianci, Lu Jiankun, Wang Yuankai, Liu Boyang, Guo Hongbo", "reference": { "type": "PubMed", "id": "38477507", "url": "https://pubmed.ncbi.nlm.nih.gov/38477507" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y383-1", "protein_name": "Putative RNA-binding protein Luc7-like 2", "gene_name": "LUC7L2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y383", "url": "https://www.uniprot.org/uniprotkb/Q9Y383" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38477507", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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