[ { "title": "Characterization of a novel coronavirus associated with severe acute respiratory syndrome.", "journal": "Science", "date": "2003", "authors": "Rota Paul A, Oberste M Steven, Monroe Stephan S, Nix W Allan, Campagnoli Ray, Icenogle Joseph P, Pe\u00f1aranda Silvia, Bankamp Bettina, Maher Kaija, Chen Min-Hsin, Tong Suxiong, Tamin Azaibi, Lowe Luis, Frace Michael, DeRisi Joseph L, Chen Qi, Wang David, Erdman Dean D, Peret Teresa C T, Burns Cara, Ksiazek Thomas G, Rollin Pierre E, Sanchez Anthony, Liffick Stephanie, Holloway Brian, Limor Josef, McCaustland Karen, Olsen-Rasmussen Melissa, Fouchier Ron, G\u00fcnther Stephan, Osterhaus Albert D M E, Drosten Christian, Pallansch Mark A, Anderson Larry J, Bellini William J", "reference": { "type": "PubMed", "id": "12730500", "url": "https://pubmed.ncbi.nlm.nih.gov/12730500" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59596-1", "protein_name": "Membrane protein", "gene_name": "M", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59633-1", "protein_name": "ORF3b protein", "gene_name": "3b", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59634-1", "protein_name": "ORF6 protein", "gene_name": "6", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59635-1", "protein_name": "ORF7a protein", "gene_name": "7a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59636-1", "protein_name": "ORF9b protein", "gene_name": "9b", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59637-1", "protein_name": "Envelope small membrane protein", "gene_name": "E", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "Q7TFA0-1", "protein_name": "ORF8a protein", "gene_name": "8a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "Q7TFA1-1", "protein_name": "Protein non-structural 7b", "gene_name": "7b", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "Q80H93-1", "protein_name": "ORF8b protein", "gene_name": "8b", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.12730500", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The genome sequence of the SARS-associated coronavirus.", "journal": "Science", "date": "2003", "authors": "Marra Marco A, Jones Steven J M, Astell Caroline R, Holt Robert A, Brooks-Wilson Angela, Butterfield Yaron S N, Khattra Jaswinder, Asano Jennifer K, Barber Sarah A, Chan Susanna Y, Cloutier Alison, Coughlin Shaun M, Freeman Doug, Girn Noreen, Griffith Obi L, Leach Stephen R, Mayo Michael, McDonald Helen, Montgomery Stephen B, Pandoh Pawan K, Petrescu Anca S, Robertson A Gordon, Schein Jacqueline E, Siddiqui Asim, Smailus Duane E, Stott Jeff M, Yang George S, Plummer Francis, Andonov Anton, Artsob Harvey, Bastien Nathalie, Bernard Kathy, Booth Timothy F, Bowness Donnie, Czub Martin, Drebot Michael, Fernando Lisa, Flick Ramon, Garbutt Michael, Gray Michael, Grolla Allen, Jones Steven, Feldmann Heinz, Meyers Adrienne, Kabani Amin, Li Yan, Normand Susan, Stroher Ute, Tipples Graham A, Tyler Shaun, Vogrig Robert, Ward Diane, Watson Brynn, Brunham Robert C, Krajden Mel, Petric Martin, Skowronski Danuta M, Upton Chris, Roper Rachel L", "reference": { "type": "PubMed", "id": "12730501", "url": "https://pubmed.ncbi.nlm.nih.gov/12730501" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59596-1", "protein_name": "Membrane protein", "gene_name": "M", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59633-1", "protein_name": "ORF3b protein", "gene_name": "3b", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59634-1", "protein_name": "ORF6 protein", "gene_name": "6", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59635-1", "protein_name": "ORF7a protein", "gene_name": "7a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59636-1", "protein_name": "ORF9b protein", "gene_name": "9b", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59637-1", "protein_name": "Envelope small membrane protein", "gene_name": "E", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "Q7TFA0-1", "protein_name": "ORF8a protein", "gene_name": "8a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "Q7TFA1-1", "protein_name": "Protein non-structural 7b", "gene_name": "7b", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "Q7TLC7-1", "protein_name": "Uncharacterized protein 14", "gene_name": "ORF14", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "Q80H93-1", "protein_name": "ORF8b protein", "gene_name": "8b", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.12730501", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Coronavirus main proteinase (3CLpro) structure: basis for design of anti-SARS drugs.", "journal": "Science", "date": "2003", "authors": "Anand Kanchan, Ziebuhr John, Wadhwani Parvesh, Mesters Jeroen R, Hilgenfeld Rolf", "reference": { "type": "PubMed", "id": "12746549", "url": "https://pubmed.ncbi.nlm.nih.gov/12746549" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.12746549", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comparative full-length genome sequence analysis of 14 SARS coronavirus isolates and common mutations associated with putative origins of infection.", "journal": "Lancet", "date": "2003", "authors": "Ruan Yi Jun, Wei Chia Lin, Ee Ai Ling, Vega Vinsensius B, Thoreau Herve, Su Se Thoe Yun, Chia Jer-Ming, Ng Patrick, Chiu Kuo Ping, Lim Landri, Zhang Tao, Peng Chan Kwai, Lin Ean Oon Lynette, Lee Ng Mah, Yee Sin Leo, Ng Lisa F P, Chee Ren Ee, Stanton Lawrence W, Long Philip M, Liu Edison T", "reference": { "type": "PubMed", "id": "12781537", "url": "https://pubmed.ncbi.nlm.nih.gov/12781537" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59596-1", "protein_name": "Membrane protein", "gene_name": "M", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59637-1", "protein_name": "Envelope small membrane protein", "gene_name": "E", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.12781537", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Coronavirus genomic-sequence variations and the epidemiology of the severe acute respiratory syndrome.", "journal": "N. Engl. J. Med.", "date": "2003", "authors": "Tsui Stephen K W, Chim Stephen S C, Lo Y M Dennis,", "reference": { "type": "PubMed", "id": "12853594", "url": "https://pubmed.ncbi.nlm.nih.gov/12853594" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59596-1", "protein_name": "Membrane protein", "gene_name": "M", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59633-1", "protein_name": "ORF3b protein", "gene_name": "3b", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59634-1", "protein_name": "ORF6 protein", "gene_name": "6", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59635-1", "protein_name": "ORF7a protein", "gene_name": "7a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59636-1", "protein_name": "ORF9b protein", "gene_name": "9b", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59637-1", "protein_name": "Envelope small membrane protein", "gene_name": "E", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "Q80H93-1", "protein_name": "ORF8b protein", "gene_name": "8b", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.12853594", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The complete genome sequence of severe acute respiratory syndrome coronavirus strain HKU-39849 (HK-39).", "journal": "Exp. Biol. Med.", "date": "2003", "authors": "Zeng F Y, Chan C W M, Chan M N, Chen J D, Chow K Y C, Hon C C, Hui K H, Li J, Li V Y Y, Wang C Y, Wang P Y, Guan Y, Zheng B, Poon L L M, Chan K H, Yuen K Y, Peiris J S M, Leung F C", "reference": { "type": "PubMed", "id": "12876307", "url": "https://pubmed.ncbi.nlm.nih.gov/12876307" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59596-1", "protein_name": "Membrane protein", "gene_name": "M", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59633-1", "protein_name": "ORF3b protein", "gene_name": "3b", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59634-1", "protein_name": "ORF6 protein", "gene_name": "6", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59635-1", "protein_name": "ORF7a protein", "gene_name": "7a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59636-1", "protein_name": "ORF9b protein", "gene_name": "9b", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59637-1", "protein_name": "Envelope small membrane protein", "gene_name": "E", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "Q80H93-1", "protein_name": "ORF8b protein", "gene_name": "8b", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.12876307", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanisms and enzymes involved in SARS coronavirus genome expression.", "journal": "The Journal of general virology", "date": "2003", "authors": "Thiel V, Ivanov KA, Putics A, Hertzig T, Schelle B, Bayer S, Weissbrich B, Snijder EJ, Rabenau H, Doerr HW, Gorbalenya AE, Ziebuhr J", "reference": { "type": "PubMed", "id": "12917450", "url": "https://pubmed.ncbi.nlm.nih.gov/12917450" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59596-1", "protein_name": "Membrane protein", "gene_name": "M", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59636-1", "protein_name": "ORF9b protein", "gene_name": "9b", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59637-1", "protein_name": "Envelope small membrane protein", "gene_name": "E", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "Q7TFA0-1", "protein_name": "ORF8a protein", "gene_name": "8a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "Q7TFA1-1", "protein_name": "Protein non-structural 7b", "gene_name": "7b", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.12917450", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural genomics of the SARS coronavirus: cloning, expression, crystallization and preliminary crystallographic study of the Nsp9 protein.", "journal": "Acta Crystallogr. D", "date": "2003", "authors": "Campanacci Val\u00e9rie, Egloff Marie-Pierre, Longhi Sonia, Ferron Fran\u00e7ois, Rancurel Corinne, Salomoni Aurelia, Durousseau C\u00e9cile, Tocque Fabienne, Br\u00e9mond Nicolas, Dobbe Jessika C, Snijder Eric J, Canard Bruno, Cambillau Christian", "reference": { "type": "PubMed", "id": "12925794", "url": "https://pubmed.ncbi.nlm.nih.gov/12925794" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.12925794", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China.", "journal": "Science", "date": "2003", "authors": "Guan Y, Zheng B J, He Y Q, Liu X L, Zhuang Z X, Cheung C L, Luo S W, Li P H, Zhang L J, Guan Y J, Butt K M, Wong K L, Chan K W, Lim W, Shortridge K F, Yuen K Y, Peiris J S M, Poon L L M", "reference": { "type": "PubMed", "id": "12958366", "url": "https://pubmed.ncbi.nlm.nih.gov/12958366" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59596-1", "protein_name": "Membrane protein", "gene_name": "M", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59637-1", "protein_name": "Envelope small membrane protein", "gene_name": "E", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.12958366", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Severe acute respiratory syndrome-associated coronavirus genotype and its characterization.", "journal": "Chin. Med. J.", "date": "2003", "authors": "Li Lanjuan, Wang Zhigang, Lu Yiyu, Bao Qiyu, Chen Suhong, Wu Nanping, Cheng Suyun, Weng Jingqing, Zhang Yanjun, Yan Juying, Mei Lingling, Wang Xiaomeng, Zhu Hanping, Yu Yingpu, Zhang Minli, Li Minhong, Yao Jun, Lu Qunying, Yao Pingping, Bo Xiaochen, Wo Jianer, Wang Shengqi, Hu Songnian", "reference": { "type": "PubMed", "id": "14527350", "url": "https://pubmed.ncbi.nlm.nih.gov/14527350" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59636-1", "protein_name": "ORF9b protein", "gene_name": "9b", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59637-1", "protein_name": "Envelope small membrane protein", "gene_name": "E", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.14527350", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biosynthesis, purification, and substrate specificity of severe acute respiratory syndrome coronavirus 3C-like proteinase.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Fan K, Wei P, Feng Q, Chen S, Huang C, Ma L, Lai B, Pei J, Liu Y, Chen J, Lai L", "reference": { "type": "PubMed", "id": "14561748", "url": "https://pubmed.ncbi.nlm.nih.gov/14561748" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.14561748", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phylogeny of the SARS coronavirus.", "journal": "Science", "date": "2003", "authors": "Eickmann Markus, Becker Stephan, Klenk Hans-Dieter, Doerr Hans Wilhelm, Stadler Konrad, Censini Stefano, Guidotti Silvia, Masignani Vega, Scarselli Maria, Mora Marirosa, Donati Claudio, Han Jang H, Song Hyun Chul, Abrignani Sergio, Covacci Antonello, Rappuoli Rino", "reference": { "type": "PubMed", "id": "14645828", "url": "https://pubmed.ncbi.nlm.nih.gov/14645828" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.14645828", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The nsp9 replicase protein of SARS-coronavirus, structure and functional insights.", "journal": "Structure", "date": "2004", "authors": "Sutton Geoff, Fry Elizabeth, Carter Lester, Sainsbury Sarah, Walter Tom, Nettleship Joanne, Berrow Nick, Owens Ray, Gilbert Robert, Davidson Andrew, Siddell Stuart, Poon Leo L M, Diprose Jonathan, Alderton David, Walsh Martin, Grimes Jonathan M, Stuart David I", "reference": { "type": "PubMed", "id": "14962394", "url": "https://pubmed.ncbi.nlm.nih.gov/14962394" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.14962394", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The severe acute respiratory syndrome-coronavirus replicative protein nsp9 is a single-stranded RNA-binding subunit unique in the RNA virus world.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2004", "authors": "Egloff Marie-Pierre, Ferron Fran\u00e7ois, Campanacci Val\u00e9rie, Longhi Sonia, Rancurel Corinne, Dutartre H\u00e9l\u00e8ne, Snijder Eric J, Gorbalenya Alexander E, Cambillau Christian, Canard Bruno", "reference": { "type": "PubMed", "id": "15007178", "url": "https://pubmed.ncbi.nlm.nih.gov/15007178" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15007178", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Severe acute respiratory syndrome coronavirus 3C-like proteinase N terminus is indispensable for proteolytic activity but not for enzyme dimerization. Biochemical and thermodynamic investigation in conjunction with molecular dynamics simulations.", "journal": "J. Biol. Chem.", "date": "2005", "authors": "Chen Shuai, Chen Lili, Tan Jinzhi, Chen Jing, Du Li, Sun Tao, Shen Jianhua, Chen Kaixian, Jiang Hualiang, Shen Xu", "reference": { "type": "PubMed", "id": "15507456", "url": "https://pubmed.ncbi.nlm.nih.gov/15507456" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15507456", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of severe acute respiratory syndrome coronavirus replicase products and characterization of papain-like protease activity.", "journal": "Journal of virology", "date": "2004", "authors": "Harcourt BH, Jukneliene D, Kanjanahaluethai A, Bechill J, Severson KM, Smith CM, Rota PA, Baker SC", "reference": { "type": "PubMed", "id": "15564471", "url": "https://pubmed.ncbi.nlm.nih.gov/15564471" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15564471", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Binding interaction of SARS coronavirus 3CL(pro) protease with vacuolar-H+ ATPase G1 subunit.", "journal": "FEBS letters", "date": "2005-11-07", "authors": "Lin Cheng-Wen, Tsai Fuu-Jen, Wan Lei, Lai Chien-Chen, Lin Kuan-Hsun, Hsieh Tsung-Han, Shiu Shi-Yi, Li Jeng-Yi", "reference": { "type": "PubMed", "id": "16226257", "url": "https://pubmed.ncbi.nlm.nih.gov/16226257" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16226257", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Insights into SARS-CoV transcription and replication from the structure of the nsp7-nsp8 hexadecamer.", "journal": "Nat. Struct. Mol. Biol.", "date": "2005", "authors": "Zhai Yujia, Sun Fei, Li Xuemei, Pang Hai, Xu Xiaoling, Bartlam Mark, Rao Zihe", "reference": { "type": "PubMed", "id": "16228002", "url": "https://pubmed.ncbi.nlm.nih.gov/16228002" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16228002", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of severe acute respiratory syndrome coronavirus ADP-ribose-1''-phosphate dephosphorylation by a conserved domain of nsP3.", "journal": "Structure (London, England : 1993)", "date": "2005-11", "authors": "Saikatendu Kumar Singh, Joseph Jeremiah S, Subramanian Vanitha, Clayton Tom, Griffith Mark, Moy Kin, Velasquez Jeffrey, Neuman Benjamin W, Buchmeier Michael J, Stevens Raymond C, Kuhn Peter", "reference": { "type": "PubMed", "id": "16271890", "url": "https://pubmed.ncbi.nlm.nih.gov/16271890" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16271890", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The papain-like protease of severe acute respiratory syndrome coronavirus has deubiquitinating activity.", "journal": "Journal of virology", "date": "2005", "authors": "Barretto N, Jukneliene D, Ratia K, Chen Z, Mesecar AD, Baker SC", "reference": { "type": "PubMed", "id": "16306590", "url": "https://pubmed.ncbi.nlm.nih.gov/16306590" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "mutagenesis": [ { "start_pos": 1651, "end_pos": 1651, "sequence_org": "C", "sequence_mut": "A", "comment": "Complete loss of PL-PRO activity.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "16306590", "url": "https://pubmed.ncbi.nlm.nih.gov/16306590" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 1688, "end_pos": 1688, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on PL-PRO activity.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "16306590", "url": "https://pubmed.ncbi.nlm.nih.gov/16306590" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 1729, "end_pos": 1729, "sequence_org": "C", "sequence_mut": "A", "comment": "Complete loss of PL-PRO activity.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "16306590", "url": "https://pubmed.ncbi.nlm.nih.gov/16306590" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 1732, "end_pos": 1732, "sequence_org": "C", "sequence_mut": "A", "comment": "Complete loss of PL-PRO activity.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "16306590", "url": "https://pubmed.ncbi.nlm.nih.gov/16306590" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 1764, "end_pos": 1764, "sequence_org": "C", "sequence_mut": "A", "comment": "Complete loss of PL-PRO activity.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "16306590", "url": "https://pubmed.ncbi.nlm.nih.gov/16306590" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 1766, "end_pos": 1766, "sequence_org": "C", "sequence_mut": "A", "comment": "Complete loss of PL-PRO activity.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "16306590", "url": "https://pubmed.ncbi.nlm.nih.gov/16306590" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 1826, "end_pos": 1826, "sequence_org": "D", "sequence_mut": "A", "comment": "Complete loss of PL-PRO activity.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "16306590", "url": "https://pubmed.ncbi.nlm.nih.gov/16306590" } ], "uniprot_canonical_ac": "P0C6X7-1" } ], "record_id": "pubmed.16306590", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Severe acute respiratory syndrome coronavirus papain-like protease: structure of a viral deubiquitinating enzyme.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2006", "authors": "Ratia Kiira, Saikatendu Kumar Singh, Santarsiero Bernard D, Barretto Naina, Baker Susan C, Stevens Raymond C, Mesecar Andrew D", "reference": { "type": "PubMed", "id": "16581910", "url": "https://pubmed.ncbi.nlm.nih.gov/16581910" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16581910", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of nonstructural protein 10 from the severe acute respiratory syndrome coronavirus reveals a novel fold with two zinc-binding motifs.", "journal": "J. Virol.", "date": "2006", "authors": "Joseph Jeremiah S, Saikatendu Kumar Singh, Subramanian Vanitha, Neuman Benjamin W, Brooun Alexei, Griffith Mark, Moy Kin, Yadav Maneesh K, Velasquez Jeffrey, Buchmeier Michael J, Stevens Raymond C, Kuhn Peter", "reference": { "type": "PubMed", "id": "16873246", "url": "https://pubmed.ncbi.nlm.nih.gov/16873246" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16873246", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dodecamer structure of severe acute respiratory syndrome coronavirus nonstructural protein nsp10.", "journal": "J. Virol.", "date": "2006", "authors": "Su Dan, Lou Zhiyong, Sun Fei, Zhai Yujia, Yang Haitao, Zhang Rongguang, Joachimiak Andrzej, Zhang Xuejun C, Bartlam Mark, Rao Zihe", "reference": { "type": "PubMed", "id": "16873247", "url": "https://pubmed.ncbi.nlm.nih.gov/16873247" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16873247", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A second, non-canonical RNA-dependent RNA polymerase in SARS coronavirus.", "journal": "EMBO J.", "date": "2006", "authors": "Imbert Isabelle, Guillemot Jean-Claude, Bourhis Jean-Marie, Bussetta C\u00e9cile, Coutard Bruno, Egloff Marie-Pierre, Ferron Fran\u00e7ois, Gorbalenya Alexander E, Canard Bruno", "reference": { "type": "PubMed", "id": "17024178", "url": "https://pubmed.ncbi.nlm.nih.gov/17024178" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.17024178", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel beta-barrel fold in the nuclear magnetic resonance structure of the replicase nonstructural protein 1 from the severe acute respiratory syndrome coronavirus.", "journal": "J. Virol.", "date": "2007", "authors": "Almeida Marcius S, Johnson Margaret A, Herrmann Torsten, Geralt Michael, W\u00fcthrich Kurt", "reference": { "type": "PubMed", "id": "17202208", "url": "https://pubmed.ncbi.nlm.nih.gov/17202208" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.17202208", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The nonstructural protein 8 (nsp8) of the SARS coronavirus interacts with its ORF6 accessory protein.", "journal": "Virology", "date": "2007", "authors": "Kumar Purnima, Gunalan Vithiagaran, Liu Boping, Chow Vincent T K, Druce Julian, Birch Chris, Catton Mike, Fielding Burtram C, Tan Yee-Joo, Lal Sunil K", "reference": { "type": "PubMed", "id": "17532020", "url": "https://pubmed.ncbi.nlm.nih.gov/17532020" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59634-1", "protein_name": "ORF6 protein", "gene_name": "6", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.17532020", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Selectivity in ISG15 and ubiquitin recognition by the SARS coronavirus papain-like protease.", "journal": "Archives of biochemistry and biophysics", "date": "2007-10-01", "authors": "Lindner Holger A, Lytvyn Viktoria, Qi Hongtao, Lachance Paule, Ziomek Edmund, M\u00e9nard Robert", "reference": { "type": "PubMed", "id": "17692280", "url": "https://pubmed.ncbi.nlm.nih.gov/17692280" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.17692280", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Topology and membrane anchoring of the coronavirus replication complex: not all hydrophobic domains of nsp3 and nsp6 are membrane spanning.", "journal": "J. Virol.", "date": "2008", "authors": "Oostra Monique, Hagemeijer Marne C, van Gent Michiel, Bekker Cornelis P J, te Lintelo Eddie G, Rottier Peter J M, de Haan Cornelis A M", "reference": { "type": "PubMed", "id": "18842706", "url": "https://pubmed.ncbi.nlm.nih.gov/18842706" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.18842706", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Severe acute respiratory syndrome coronavirus nsp9 dimerization is essential for efficient viral growth.", "journal": "Journal of virology", "date": "2009", "authors": "Miknis ZJ, Donaldson EF, Umland TC, Rimmer RA, Baric RS, Schultz LW", "reference": { "type": "PubMed", "id": "19153232", "url": "https://pubmed.ncbi.nlm.nih.gov/19153232" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "mutagenesis": [ { "start_pos": 4217, "end_pos": 4217, "sequence_org": "G", "sequence_mut": "E", "comment": "Complete loss of nsp9 dimerization.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "19153232", "url": "https://pubmed.ncbi.nlm.nih.gov/19153232" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 4221, "end_pos": 4221, "sequence_org": "G", "sequence_mut": "E", "comment": "Complete loss of nsp9 dimerization.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "19153232", "url": "https://pubmed.ncbi.nlm.nih.gov/19153232" } ], "uniprot_canonical_ac": "P0C6X7-1" } ], "record_id": "pubmed.19153232", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Severe acute respiratory syndrome coronavirus papain-like protease ubiquitin-like domain and catalytic domain regulate antagonism of IRF3 and NF-kappaB signaling.", "journal": "Journal of virology", "date": "2009-07", "authors": "Frieman Matthew, Ratia Kiira, Johnston Robert E, Mesecar Andrew D, Baric Ralph S", "reference": { "type": "PubMed", "id": "19369340", "url": "https://pubmed.ncbi.nlm.nih.gov/19369340" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.19369340", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mobility and interactions of coronavirus nonstructural protein 4.", "journal": "J. Virol.", "date": "2011", "authors": "Hagemeijer Marne C, Ulasli Mustafa, Vonk Annelotte M, Reggiori Fulvio, Rottier Peter J M, de Haan Cornelis A M", "reference": { "type": "PubMed", "id": "21345958", "url": "https://pubmed.ncbi.nlm.nih.gov/21345958" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.21345958", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The SARS-coronavirus nsp7+nsp8 complex is a unique multimeric RNA polymerase capable of both de novo initiation and primer extension.", "journal": "Nucleic acids research", "date": "2012-02", "authors": "te Velthuis Aartjan J W, van den Worm Sjoerd H E, Snijder Eric J", "reference": { "type": "PubMed", "id": "22039154", "url": "https://pubmed.ncbi.nlm.nih.gov/22039154" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.22039154", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNA 3'-end mismatch excision by the severe acute respiratory syndrome coronavirus nonstructural protein nsp10/nsp14 exoribonuclease complex.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2012-06-12", "authors": "Bouvet Micka\u00ebl, Imbert Isabelle, Subissi Lorenzo, Gluais Laure, Canard Bruno, Decroly Etienne", "reference": { "type": "PubMed", "id": "22635272", "url": "https://pubmed.ncbi.nlm.nih.gov/22635272" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.22635272", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Severe acute respiratory syndrome coronavirus nonstructural proteins 3, 4, and 6 induce double-membrane vesicles.", "journal": "mBio", "date": "2013-08-13", "authors": "Angelini Megan M, Akhlaghpour Marzieh, Neuman Benjamin W, Buchmeier Michael J", "reference": { "type": "PubMed", "id": "23943763", "url": "https://pubmed.ncbi.nlm.nih.gov/23943763" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.23943763", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Untangling membrane rearrangement in the nidovirales.", "journal": "DNA and cell biology", "date": "2014-03", "authors": "Angelini Megan Mary, Neuman Benjamin William, Buchmeier Michael J", "reference": { "type": "PubMed", "id": "24410069", "url": "https://pubmed.ncbi.nlm.nih.gov/24410069" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.24410069", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Coronavirus NSP6 restricts autophagosome expansion.", "journal": "Autophagy", "date": "2014-08", "authors": "Cottam Eleanor M, Whelband Matthew C, Wileman Thomas", "reference": { "type": "PubMed", "id": "24991833", "url": "https://pubmed.ncbi.nlm.nih.gov/24991833" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.24991833", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SARS coronavirus protein nsp1 disrupts localization of Nup93 from the nuclear pore complex.", "journal": "Biochemistry and cell biology = Biochimie et biologie cellulaire", "date": "2019", "authors": "Gomez GN, Abrar F, Dodhia MP, Gonzalez FG, Nag A", "reference": { "type": "PubMed", "id": "30943371", "url": "https://pubmed.ncbi.nlm.nih.gov/30943371" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "Q8N1F7-1", "protein_name": "Nuclear pore complex protein Nup93", "gene_name": "NUP93", "tax_name": "Human" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.30943371", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Processing of the SARS-CoV pp1a/ab nsp7-10 region.", "journal": "The Biochemical journal", "date": "2020", "authors": "Krichel B, Falke S, Hilgenfeld R, Redecke L, Uetrecht C", "reference": { "type": "PubMed", "id": "32083638", "url": "https://pubmed.ncbi.nlm.nih.gov/32083638" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6U8-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "1a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6U8", "url": "https://www.uniprot.org/uniprotkb/P0C6U8" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.32083638", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The severe acute respiratory syndrome (SARS) coronavirus NTPase/helicase belongs to a distinct class of 5' to 3' viral helicases.", "journal": "The Journal of biological chemistry", "date": "2003-10-10", "authors": "Tanner Julian A, Watt Rory M, Chai Yu-Bo, Lu Lin-Yu, Lin Marie C, Peiris J S Malik, Poon Leo L M, Kung Hsiang-Fu, Huang Jian-Dong", "reference": { "type": "PubMed", "id": "12917423", "url": "https://pubmed.ncbi.nlm.nih.gov/12917423" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.12917423", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Discovery of an RNA virus 3'->5' exoribonuclease that is critically involved in coronavirus RNA synthesis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006-03-28", "authors": "Minskaia Ekaterina, Hertzig Tobias, Gorbalenya Alexander E, Campanacci Val\u00e9rie, Cambillau Christian, Canard Bruno, Ziebuhr John", "reference": { "type": "PubMed", "id": "16549795", "url": "https://pubmed.ncbi.nlm.nih.gov/16549795" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16549795", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNA recognition and cleavage by the SARS coronavirus endoribonuclease.", "journal": "Journal of molecular biology", "date": "2006", "authors": "Bhardwaj K, Sun J, Holzenburg A, Guarino LA, Kao CC", "reference": { "type": "PubMed", "id": "16828802", "url": "https://pubmed.ncbi.nlm.nih.gov/16828802" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "mutagenesis": [ { "start_pos": 6663, "end_pos": 6663, "sequence_org": "H", "sequence_mut": "A", "comment": "Complete loss of NSP15 endonuclease activity.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "18045871", "url": "https://pubmed.ncbi.nlm.nih.gov/18045871" }, { "database": "PubMed", "id": "16828802", "url": "https://pubmed.ncbi.nlm.nih.gov/16828802" } ], "uniprot_canonical_ac": "P0C6X7-1" } ], "record_id": "pubmed.16828802", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure and mechanistic determinants of SARS coronavirus nonstructural protein 15 define an endoribonuclease family.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2006", "authors": "Ricagno Stefano, Egloff Marie-Pierre, Ulferts Rachel, Coutard Bruno, Nurizzo Didier, Campanacci Val\u00e9rie, Cambillau Christian, Ziebuhr John, Canard Bruno", "reference": { "type": "PubMed", "id": "16882730", "url": "https://pubmed.ncbi.nlm.nih.gov/16882730" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16882730", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Localization and membrane topology of coronavirus nonstructural protein 4: involvement of the early secretory pathway in replication.", "journal": "J. Virol.", "date": "2007", "authors": "Oostra M, te Lintelo E G, Deijs M, Verheije M H, Rottier P J M, de Haan C A M", "reference": { "type": "PubMed", "id": "17855519", "url": "https://pubmed.ncbi.nlm.nih.gov/17855519" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.17855519", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural and functional analyses of the severe acute respiratory syndrome coronavirus endoribonuclease Nsp15.", "journal": "The Journal of biological chemistry", "date": "2008", "authors": "Bhardwaj K, Palaninathan S, Alcantara JMO, Li Yi L, Guarino L, Sacchettini JC, Kao CC", "reference": { "type": "PubMed", "id": "18045871", "url": "https://pubmed.ncbi.nlm.nih.gov/18045871" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "mutagenesis": [ { "start_pos": 6663, "end_pos": 6663, "sequence_org": "H", "sequence_mut": "A", "comment": "Complete loss of NSP15 endonuclease activity.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "18045871", "url": "https://pubmed.ncbi.nlm.nih.gov/18045871" }, { "database": "PubMed", "id": "16828802", "url": "https://pubmed.ncbi.nlm.nih.gov/16828802" } ], "uniprot_canonical_ac": "P0C6X7-1" } ], "record_id": "pubmed.18045871", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Coronavirus nonstructural protein 16 is a cap-0 binding enzyme possessing (nucleoside-2'O)-methyltransferase activity.", "journal": "Journal of virology", "date": "2008-08", "authors": "Decroly Etienne, Imbert Isabelle, Coutard Bruno, Bouvet Micka\u00ebl, Selisko Barbara, Alvarez Karine, Gorbalenya Alexander E, Snijder Eric J, Canard Bruno", "reference": { "type": "PubMed", "id": "18417574", "url": "https://pubmed.ncbi.nlm.nih.gov/18417574" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.18417574", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genome-wide analysis of protein-protein interactions and involvement of viral proteins in SARS-CoV replication.", "journal": "PLoS ONE", "date": "2008", "authors": "Pan Ji'an, Peng Xiaoxue, Gao Yajing, Li Zhilin, Lu Xiaolu, Chen Yingzhao, Ishaq Musarat, Liu Dan, Dediego Marta L, Enjuanes Luis, Guo Deyin", "reference": { "type": "PubMed", "id": "18827877", "url": "https://pubmed.ncbi.nlm.nih.gov/18827877" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.18827877", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "In vitro reconstitution of SARS-coronavirus mRNA cap methylation.", "journal": "PLoS pathogens", "date": "2010-04-22", "authors": "Bouvet Micka\u00ebl, Debarnot Claire, Imbert Isabelle, Selisko Barbara, Snijder Eric J, Canard Bruno, Decroly Etienne", "reference": { "type": "PubMed", "id": "20421945", "url": "https://pubmed.ncbi.nlm.nih.gov/20421945" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.20421945", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Coronaviruses: an RNA proofreading machine regulates replication fidelity and diversity.", "journal": "RNA biology", "date": "2011", "authors": "Denison Mark R, Graham Rachel L, Donaldson Eric F, Eckerle Lance D, Baric Ralph S", "reference": { "type": "PubMed", "id": "21593585", "url": "https://pubmed.ncbi.nlm.nih.gov/21593585" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.21593585", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biochemical and structural insights into the mechanisms of SARS coronavirus RNA ribose 2'-O-methylation by nsp16/nsp10 protein complex.", "journal": "PLoS pathogens", "date": "2011", "authors": "Chen Y, Su C, Ke M, Jin X, Xu L, Zhang Z, Wu A, Sun Y, Yang Z, Tien P, Ahola T, Liang Y, Liu X, Guo D", "reference": { "type": "PubMed", "id": "22022266", "url": "https://pubmed.ncbi.nlm.nih.gov/22022266" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "mutagenesis": [ { "start_pos": 4306, "end_pos": 4308, "sequence_org": "YCR", "sequence_mut": "AAA", "comment": "Complete loss of NSP16 binding to SAM and NSP16 MTase activity.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "22022266", "url": "https://pubmed.ncbi.nlm.nih.gov/22022266" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 4313, "end_pos": 4314, "sequence_org": "HP", "sequence_mut": "AA", "comment": "Complete loss of NSP16 binding to SAM and NSP16 MTase activity.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "22022266", "url": "https://pubmed.ncbi.nlm.nih.gov/22022266" } ], "uniprot_canonical_ac": "P0C6X7-1" } ], "record_id": "pubmed.22022266", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanism of nucleic acid unwinding by SARS-CoV helicase.", "journal": "PloS one", "date": "2012", "authors": "Adedeji Adeyemi O, Marchand Bruno, Te Velthuis Aartjan J W, Snijder Eric J, Weiss Susan, Eoff Robert L, Singh Kamalendra, Sarafianos Stefan G", "reference": { "type": "PubMed", "id": "22615777", "url": "https://pubmed.ncbi.nlm.nih.gov/22615777" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.22615777", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biochemical characterization of a recombinant SARS coronavirus nsp12 RNA-dependent RNA polymerase capable of copying viral RNA templates.", "journal": "Archives of virology", "date": "2012-11", "authors": "Ahn Dae-Gyun, Choi Jin-Kyu, Taylor Deborah R, Oh Jong-Won", "reference": { "type": "PubMed", "id": "22791111", "url": "https://pubmed.ncbi.nlm.nih.gov/22791111" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.22791111", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Coronaviruses lacking exoribonuclease activity are susceptible to lethal mutagenesis: evidence for proofreading and potential therapeutics.", "journal": "PLoS pathogens", "date": "2013-08", "authors": "Smith Everett Clinton, Blanc Herv\u00e9, Surdel Matthew C, Vignuzzi Marco, Denison Mark R", "reference": { "type": "PubMed", "id": "23966862", "url": "https://pubmed.ncbi.nlm.nih.gov/23966862" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.23966862", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Early endonuclease-mediated evasion of RNA sensing ensures efficient coronavirus replication.", "journal": "PLoS pathogens", "date": "2017-02", "authors": "Kindler Eveline, Gil-Cruz Cristina, Spanier Julia, Li Yize, Wilhelm Jochen, Rabouw Huib H, Z\u00fcst Roland, Hwang Mihyun, V'kovski Philip, Stalder Hanspeter, Marti Sabrina, Habjan Matthias, Cervantes-Barragan Luisa, Elliot Ruth, Karl Nadja, Gaughan Christina, van Kuppeveld Frank J M, Silverman Robert H, Keller Markus, Ludewig Burkhard, Bergmann Cornelia C, Ziebuhr John, Weiss Susan R, Kalinke Ulrich, Thiel Volker", "reference": { "type": "PubMed", "id": "28158275", "url": "https://pubmed.ncbi.nlm.nih.gov/28158275" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.28158275", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Coronavirus Susceptibility to the Antiviral Remdesivir (GS-5734) Is Mediated by the Viral Polymerase and the Proofreading Exoribonuclease.", "journal": "mBio", "date": "2018-03-06", "authors": "Agostini Maria L, Andres Erica L, Sims Amy C, Graham Rachel L, Sheahan Timothy P, Lu Xiaotao, Smith Everett Clinton, Case James Brett, Feng Joy Y, Jordan Robert, Ray Adrian S, Cihlar Tomas, Siegel Dustin, Mackman Richard L, Clarke Michael O, Baric Ralph S, Denison Mark R", "reference": { "type": "PubMed", "id": "29511076", "url": "https://pubmed.ncbi.nlm.nih.gov/29511076" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.29511076", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure-function analysis of the nsp14 N7-guanine methyltransferase reveals an essential role in Betacoronavirus replication.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2021", "authors": "Ogando NS, El Kazzi P, Zevenhoven-Dobbe JC, Bontes BW, Decombe A, Posthuma CC, Thiel V, Canard B, Ferron F, Decroly E, Snijder EJ", "reference": { "type": "PubMed", "id": "34845015", "url": "https://pubmed.ncbi.nlm.nih.gov/34845015" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C6X7-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "mutagenesis": [ { "start_pos": 6194, "end_pos": 6194, "sequence_org": "W", "sequence_mut": "A", "comment": "Complete loss of NSP14 guanine-N7 methyltransferase activity ex vivo. No effect on ExoN activity ex vivo. Partial loss of virus infectivity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "34845015", "url": "https://pubmed.ncbi.nlm.nih.gov/34845015" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 6208, "end_pos": 6208, "sequence_org": "N", "sequence_mut": "A", "comment": "Partial loss of NSP14 guanine-N7 methyltransferase activity ex vivo. No effect on ExoN activity ex vivo. No effect on virus infectivity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "34845015", "url": "https://pubmed.ncbi.nlm.nih.gov/34845015" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 6212, "end_pos": 6212, "sequence_org": "R", "sequence_mut": "A", "comment": "Complete loss of NSP14 guanine-N7 methyltransferase activity ex vivo. Partial loss of ExoN activity ex vivo. Complete loss of virus infectivity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "34845015", "url": "https://pubmed.ncbi.nlm.nih.gov/34845015" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 6233, "end_pos": 6233, "sequence_org": "D", "sequence_mut": "A", "comment": "Complete loss of NSP14 guanine-N7 methyltransferase activity ex vivo. No effect on ExoN activity ex vivo. Complete loss of virus infectivity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "34845015", "url": "https://pubmed.ncbi.nlm.nih.gov/34845015" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 6238, "end_pos": 6238, "sequence_org": "K", "sequence_mut": "A", "comment": "Complete loss of NSP14 guanine-N7 methyltransferase activity ex vivo. No effect on ExoN activity ex vivo. No effect on virus infectivity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "34845015", "url": "https://pubmed.ncbi.nlm.nih.gov/34845015" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 6254, "end_pos": 6254, "sequence_org": "D", "sequence_mut": "A", "comment": "Complete loss of NSP14 guanine-N7 methyltransferase activity ex vivo. No effect on ExoN activity ex vivo. Partial loss of virus infectivity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "34845015", "url": "https://pubmed.ncbi.nlm.nih.gov/34845015" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 6288, "end_pos": 6288, "sequence_org": "N", "sequence_mut": "A", "comment": "Complete loss of NSP14 guanine-N7 methyltransferase activity ex vivo. No effect on ExoN activity ex vivo. Complete loss of virus infectivity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "34845015", "url": "https://pubmed.ncbi.nlm.nih.gov/34845015" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 6322, "end_pos": 6322, "sequence_org": "Y", "sequence_mut": "A", "comment": "Complete loss of NSP14 guanine-N7 methyltransferase activity ex vivo. Partial loss of ExoN activity ex vivo. Complete loss of virus infectivity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "34845015", "url": "https://pubmed.ncbi.nlm.nih.gov/34845015" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 6324, "end_pos": 6324, "sequence_org": "N", "sequence_mut": "A", "comment": "No effect NSP14 guanine-N7 methyltransferase activity ex vivo. No effect on ExoN activity ex vivo. No effect on virus infectivity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "34845015", "url": "https://pubmed.ncbi.nlm.nih.gov/34845015" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 6326, "end_pos": 6326, "sequence_org": "H", "sequence_mut": "A", "comment": "Partial loss of NSP14 guanine-N7 methyltransferase activity ex vivo. Partial loss of ExoN activity ex vivo. Partial loss of virus infectivity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "34845015", "url": "https://pubmed.ncbi.nlm.nih.gov/34845015" } ], "uniprot_canonical_ac": "P0C6X7-1" }, { "start_pos": 6328, "end_pos": 6328, "sequence_org": "F", "sequence_mut": "A", "comment": "Complete loss of NSP14 guanine-N7 methyltransferase activity ex vivo. No effect on ExoN activity ex vivo. Complete loss of virus infectivity in vivo.", "evidence": [ { "database": "UniProtKB", "id": "P0C6X7", "url": "https://www.uniprot.org/uniprotkb/P0C6X7" }, { "database": "PubMed", "id": "34845015", "url": "https://pubmed.ncbi.nlm.nih.gov/34845015" } ], "uniprot_canonical_ac": "P0C6X7-1" } ], "record_id": "pubmed.34845015", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular modelling of S1 and S2 subunits of SARS coronavirus spike glycoprotein.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2003", "authors": "Spiga Ottavia, Bernini Andrea, Ciutti Arianna, Chiellini Stefano, Menciassi Nicola, Finetti Francesca, Causarono Vincenza, Anselmi Francesca, Prischi Filippo, Niccolai Neri", "reference": { "type": "PubMed", "id": "14511651", "url": "https://pubmed.ncbi.nlm.nih.gov/14511651" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.14511651", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A 193-amino acid fragment of the SARS coronavirus S protein efficiently binds angiotensin-converting enzyme 2.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Wong SK, Li W, Moore MJ, Choe H, Farzan M", "reference": { "type": "PubMed", "id": "14670965", "url": "https://pubmed.ncbi.nlm.nih.gov/14670965" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "mutagenesis": [ { "start_pos": 323, "end_pos": 323, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on human ACE2 binding in vitro.", "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" }, { "database": "PubMed", "id": "14670965", "url": "https://pubmed.ncbi.nlm.nih.gov/14670965" } ], "uniprot_canonical_ac": "P59594-1" }, { "start_pos": 348, "end_pos": 348, "sequence_org": "C", "sequence_mut": "A", "comment": "Complete loss of human ACE2 binding in vitro.", "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" }, { "database": "PubMed", "id": "14670965", "url": "https://pubmed.ncbi.nlm.nih.gov/14670965" } ], "uniprot_canonical_ac": "P59594-1" }, { "start_pos": 452, "end_pos": 452, "sequence_org": "E", "sequence_mut": "A", "comment": "90% loss of human ACE2 binding in vitro.", "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" }, { "database": "PubMed", "id": "14670965", "url": "https://pubmed.ncbi.nlm.nih.gov/14670965" } ], "uniprot_canonical_ac": "P59594-1" }, { "start_pos": 454, "end_pos": 454, "sequence_org": "D", "sequence_mut": "A", "comment": "Complete loss of human ACE2 binding in vitro.", "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" }, { "database": "PubMed", "id": "14670965", "url": "https://pubmed.ncbi.nlm.nih.gov/14670965" } ], "uniprot_canonical_ac": "P59594-1" }, { "start_pos": 463, "end_pos": 463, "sequence_org": "D", "sequence_mut": "A", "comment": "Partial loss of human ACE2 binding in vitro.", "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" }, { "database": "PubMed", "id": "14670965", "url": "https://pubmed.ncbi.nlm.nih.gov/14670965" } ], "uniprot_canonical_ac": "P59594-1" }, { "start_pos": 467, "end_pos": 467, "sequence_org": "C", "sequence_mut": "A", "comment": "Complete loss of human ACE2 binding in vitro.", "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" }, { "database": "PubMed", "id": "14670965", "url": "https://pubmed.ncbi.nlm.nih.gov/14670965" } ], "uniprot_canonical_ac": "P59594-1" }, { "start_pos": 474, "end_pos": 474, "sequence_org": "C", "sequence_mut": "A", "comment": "Complete loss of human ACE2 binding in vitro.", "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" }, { "database": "PubMed", "id": "14670965", "url": "https://pubmed.ncbi.nlm.nih.gov/14670965" } ], "uniprot_canonical_ac": "P59594-1" }, { "start_pos": 480, "end_pos": 480, "sequence_org": "D", "sequence_mut": "A", "comment": "No effect on human ACE2 binding in vitro.", "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" }, { "database": "PubMed", "id": "14670965", "url": "https://pubmed.ncbi.nlm.nih.gov/14670965" } ], "uniprot_canonical_ac": "P59594-1" } ], "record_id": "pubmed.14670965", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel severe acute respiratory syndrome coronavirus protein, U274, is transported to the cell surface and undergoes endocytosis.", "journal": "J. Virol.", "date": "2004", "authors": "Tan Yee-Joo, Teng Eileen, Shen Shuo, Tan Timothy H P, Goh Phuay-Yee, Fielding Burtram C, Ooi Eng-Eong, Tan Hwee-Cheng, Lim Seng Gee, Hong Wanjin", "reference": { "type": "PubMed", "id": "15194747", "url": "https://pubmed.ncbi.nlm.nih.gov/15194747" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59596-1", "protein_name": "Membrane protein", "gene_name": "M", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59635-1", "protein_name": "ORF7a protein", "gene_name": "7a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59637-1", "protein_name": "Envelope small membrane protein", "gene_name": "E", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15194747", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Oligomerization of the SARS-CoV S glycoprotein: dimerization of the N-terminus and trimerization of the ectodomain.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2004", "authors": "Xiao Xiaodong, Feng Yang, Chakraborti Samitabh, Dimitrov Dimiter S", "reference": { "type": "PubMed", "id": "15313178", "url": "https://pubmed.ncbi.nlm.nih.gov/15313178" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15313178", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of severe acute respiratory syndrome coronavirus spike protein fusion core.", "journal": "J. Biol. Chem.", "date": "2004", "authors": "Xu Yanhui, Lou Zhiyong, Liu Yiwei, Pang Hai, Tien Po, Gao George F, Rao Zihe", "reference": { "type": "PubMed", "id": "15345712", "url": "https://pubmed.ncbi.nlm.nih.gov/15345712" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15345712", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The spike protein of severe acute respiratory syndrome (SARS) is cleaved in virus infected Vero-E6 cells.", "journal": "Cell Res.", "date": "2004", "authors": "Wu Xiao Dong, Shang Bo, Yang Rui Fu, Yu Hao, Ma Zhi Hai, Shen Xu, Ji Yong Yong, Lin Ying, Wu Ya Di, Lin Guo Mei, Tian Lin, Gan Xiao Qing, Yang Sheng, Jiang Wei Hong, Dai Er Hei, Wang Xiao Yi, Jiang Hua Liang, Xie You Hua, Zhu Xue Liang, Pei Gang, Li Lin, Wu Jia Rui, Sun Bing", "reference": { "type": "PubMed", "id": "15450134", "url": "https://pubmed.ncbi.nlm.nih.gov/15450134" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15450134", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the heptad repeat regions, HR1 and HR2, and design of a fusion core structure model of the spike protein from severe acute respiratory syndrome (SARS) coronavirus.", "journal": "Biochemistry", "date": "2004", "authors": "Xu Yanhui, Zhu Jieqing, Liu Yiwei, Lou Zhiyong, Yuan Fang, Liu Yueyong, Cole David K, Ni Ling, Su Nan, Qin Lan, Li Xu, Bai Zhihong, Bell John I, Pang Hai, Tien Po, Gao George F, Rao Zihe", "reference": { "type": "PubMed", "id": "15518555", "url": "https://pubmed.ncbi.nlm.nih.gov/15518555" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15518555", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of a proteolytically resistant core from the severe acute respiratory syndrome coronavirus S2 fusion protein.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2004", "authors": "Supekar Vinit M, Bruckmann Chiara, Ingallinella Paolo, Bianchi Elisabetta, Pessi Antonello, Carf\u00ed Andrea", "reference": { "type": "PubMed", "id": "15604146", "url": "https://pubmed.ncbi.nlm.nih.gov/15604146" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15604146", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2005", "authors": "Song Huai-Dong, Tu Chang-Chun, Zhang Guo-Wei, Wang Sheng-Yue, Zheng Kui, Lei Lian-Cheng, Chen Qiu-Xia, Gao Yu-Wei, Zhou Hui-Qiong, Xiang Hua, Zheng Hua-Jun, Chern Shur-Wern Wang, Cheng Feng, Pan Chun-Ming, Xuan Hua, Chen Sai-Juan, Luo Hui-Ming, Zhou Duan-Hua, Liu Yu-Fei, He Jian-Feng, Qin Peng-Zhe, Li Ling-Hui, Ren Yu-Qi, Liang Wen-Jia, Yu Ye-Dong, Anderson Larry, Wang Ming, Xu Rui-Heng, Wu Xin-Wei, Zheng Huan-Ying, Chen Jin-Ding, Liang Guodong, Gao Yang, Liao Ming, Fang Ling, Jiang Li-Yun, Li Hui, Chen Fang, Di Biao, He Li-Juan, Lin Jin-Yan, Tong Suxiang, Kong Xiangang, Du Lin, Hao Pei, Tang Hua, Bernini Andrea, Yu Xiao-Jing, Spiga Ottavia, Guo Zong-Ming, Pan Hai-Yan, He Wei-Zhong, Manuguerra Jean-Claude, Fontanet Arnaud, Danchin Antoine, Niccolai Neri, Li Yi-Xue, Wu Chung-I, Zhao Guo-Ping", "reference": { "type": "PubMed", "id": "15695582", "url": "https://pubmed.ncbi.nlm.nih.gov/15695582" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15695582", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential maturation and subcellular localization of severe acute respiratory syndrome coronavirus surface proteins S, M and E.", "journal": "J. Gen. Virol.", "date": "2005", "authors": "Nal B\u00e9atrice, Chan Cheman, Kien Francois, Siu Lewis, Tse Jane, Chu Kid, Kam Jason, Staropoli Isabelle, Crescenzo-Chaigne Bernadette, Escriou Nicolas, van der Werf Sylvie, Yuen Kwok-Yung, Altmeyer Ralf", "reference": { "type": "PubMed", "id": "15831954", "url": "https://pubmed.ncbi.nlm.nih.gov/15831954" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15831954", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of the putative fusion peptide of the severe acute respiratory syndrome-associated coronavirus spike protein.", "journal": "J. Virol.", "date": "2005", "authors": "Sainz Bruno, Rausch Joshua M, Gallaher William R, Garry Robert F, Wimley William C", "reference": { "type": "PubMed", "id": "15890958", "url": "https://pubmed.ncbi.nlm.nih.gov/15890958" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15890958", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Furin cleavage of the SARS coronavirus spike glycoprotein enhances cell-cell fusion but does not affect virion entry.", "journal": "Virology", "date": "2006", "authors": "Follis KE, York J, Nunberg JH", "reference": { "type": "PubMed", "id": "16519916", "url": "https://pubmed.ncbi.nlm.nih.gov/16519916" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "mutagenesis": [ { "start_pos": 667, "end_pos": 667, "sequence_org": "R", "sequence_mut": "S", "comment": "40% loss of cell-cell fusion.", "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" }, { "database": "PubMed", "id": "16519916", "url": "https://pubmed.ncbi.nlm.nih.gov/16519916" } ], "uniprot_canonical_ac": "P59594-1" }, { "start_pos": 672, "end_pos": 672, "sequence_org": "K", "sequence_mut": "S", "comment": "No effect on cell-cell fusion.", "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" }, { "database": "PubMed", "id": "16519916", "url": "https://pubmed.ncbi.nlm.nih.gov/16519916" } ], "uniprot_canonical_ac": "P59594-1" } ], "record_id": "pubmed.16519916", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structures and polymorphic interactions of two heptad-repeat regions of the SARS virus S2 protein.", "journal": "Structure", "date": "2006", "authors": "Deng Yiqun, Liu Jie, Zheng Qi, Yong Wei, Lu Min", "reference": { "type": "PubMed", "id": "16698550", "url": "https://pubmed.ncbi.nlm.nih.gov/16698550" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16698550", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Severe acute respiratory syndrome coronavirus 7a accessory protein is a viral structural protein.", "journal": "J. Virol.", "date": "2006", "authors": "Huang Cheng, Ito Naoto, Tseng Chien-Te K, Makino Shinji", "reference": { "type": "PubMed", "id": "16840309", "url": "https://pubmed.ncbi.nlm.nih.gov/16840309" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59635-1", "protein_name": "ORF7a protein", "gene_name": "7a", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16840309", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Palmitoylation of the cysteine-rich endodomain of the SARS-coronavirus spike glycoprotein is important for spike-mediated cell fusion.", "journal": "Virology", "date": "2007", "authors": "Petit CM, Chouljenko VN, Iyer A, Colgrove R, Farzan M, Knipe DM, Kousoulas KG", "reference": { "type": "PubMed", "id": "17134730", "url": "https://pubmed.ncbi.nlm.nih.gov/17134730" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.17134730", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The cytoplasmic tail of the severe acute respiratory syndrome coronavirus spike protein contains a novel endoplasmic reticulum retrieval signal that binds COPI and promotes interaction with membrane protein.", "journal": "Journal of virology", "date": "2007", "authors": "McBride CE, Li J, Machamer CE", "reference": { "type": "PubMed", "id": "17166901", "url": "https://pubmed.ncbi.nlm.nih.gov/17166901" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "mutagenesis": [ { "start_pos": 1251, "end_pos": 1251, "sequence_org": "K", "sequence_mut": "A", "comment": "Decrease in Golgi localization, and complete loss of COPI binding; when associated with A-1253.", "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" }, { "database": "PubMed", "id": "17166901", "url": "https://pubmed.ncbi.nlm.nih.gov/17166901" } ], "uniprot_canonical_ac": "P59594-1" }, { "start_pos": 1253, "end_pos": 1253, "sequence_org": "H", "sequence_mut": "A", "comment": "Decrease in Golgi localization, and complete loss of COPI binding; when associated with A-1251.", "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" }, { "database": "PubMed", "id": "17166901", "url": "https://pubmed.ncbi.nlm.nih.gov/17166901" } ], "uniprot_canonical_ac": "P59594-1" } ], "record_id": "pubmed.17166901", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The SARS-CoV fusion peptide forms an extended bipartite fusion platform that perturbs membrane order in a calcium-dependent manner.", "journal": "J. Mol. Biol.", "date": "2017", "authors": "Lai Alex L, Millet Jean K, Daniel Susan, Freed Jack H, Whittaker Gary R", "reference": { "type": "PubMed", "id": "29056462", "url": "https://pubmed.ncbi.nlm.nih.gov/29056462" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59594", "url": "https://www.uniprot.org/uniprotkb/P59594" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.29056462", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of the N-terminal RNA-binding domain of the SARS CoV nucleocapsid protein.", "journal": "Biochemistry", "date": "2004", "authors": "Huang Qiulong, Yu Liping, Petros Andrew M, Gunasekera Angelo, Liu Zhihong, Xu Nan, Hajduk Philip, Mack Jamey, Fesik Stephen W, Olejniczak Edward T", "reference": { "type": "PubMed", "id": "15147189", "url": "https://pubmed.ncbi.nlm.nih.gov/15147189" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59595", "url": "https://www.uniprot.org/uniprotkb/P59595" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15147189", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of protein-protein interactions between the nucleocapsid protein and membrane protein of the SARS coronavirus.", "journal": "Virus Res.", "date": "2004", "authors": "He Runtao, Leeson Andrew, Ballantine Melissa, Andonov Anton, Baker Lindsay, Dobie Frederick, Li Yan, Bastien Nathalie, Feldmann Heinz, Strocher Ute, Theriault Steven, Cutts Todd, Cao Jingxin, Booth Timothy F, Plummer Frank A, Tyler Shaun, Li Xuguang", "reference": { "type": "PubMed", "id": "15351485", "url": "https://pubmed.ncbi.nlm.nih.gov/15351485" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59595", "url": "https://www.uniprot.org/uniprotkb/P59595" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15351485", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of the severe acute respiratory syndrome (SARS) coronavirus nucleocapsid protein dimerization domain reveals evolutionary linkage between corona- and arteriviridae.", "journal": "J. Biol. Chem.", "date": "2006", "authors": "Yu I-Mei, Oldham Michael L, Zhang Jingqiang, Chen Jue", "reference": { "type": "PubMed", "id": "16627473", "url": "https://pubmed.ncbi.nlm.nih.gov/16627473" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59595", "url": "https://www.uniprot.org/uniprotkb/P59595" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16627473", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The intracellular sites of early replication and budding of SARS-coronavirus.", "journal": "Virology", "date": "2007-05-10", "authors": "Stertz Silke, Reichelt Mike, Spiegel Martin, Kuri Thomas, Mart\u00ednez-Sobrido Luis, Garc\u00eda-Sastre Adolfo, Weber Friedemann, Kochs Georg", "reference": { "type": "PubMed", "id": "17210170", "url": "https://pubmed.ncbi.nlm.nih.gov/17210170" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59595", "url": "https://www.uniprot.org/uniprotkb/P59595" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.17210170", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ribonucleocapsid formation of severe acute respiratory syndrome coronavirus through molecular action of the N-terminal domain of N protein.", "journal": "J. Virol.", "date": "2007", "authors": "Saikatendu Kumar Singh, Joseph Jeremiah S, Subramanian Vanitha, Neuman Benjamin W, Buchmeier Michael J, Stevens Raymond C, Kuhn Peter", "reference": { "type": "PubMed", "id": "17229691", "url": "https://pubmed.ncbi.nlm.nih.gov/17229691" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59595", "url": "https://www.uniprot.org/uniprotkb/P59595" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.17229691", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of the SARS coronavirus nucleocapsid protein RNA-binding dimerization domain suggests a mechanism for helical packaging of viral RNA.", "journal": "J. Mol. Biol.", "date": "2007", "authors": "Chen Chun-Yuan, Chang Chung-Ke, Chang Yi-Wei, Sue Shih-Che, Bai Hsin-I, Riang Lilianty, Hsiao Chwan-Deng, Huang Tai-Huang", "reference": { "type": "PubMed", "id": "17379242", "url": "https://pubmed.ncbi.nlm.nih.gov/17379242" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59595", "url": "https://www.uniprot.org/uniprotkb/P59595" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.17379242", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Solution structure of the c-terminal dimerization domain of SARS coronavirus nucleocapsid protein solved by the SAIL-NMR method.", "journal": "J. Mol. Biol.", "date": "2008", "authors": "Takeda Mitsuhiro, Chang Chung-ke, Ikeya Teppei, G\u00fcntert Peter, Chang Yuan-hsiang, Hsu Yen-lan, Huang Tai-huang, Kainosho Masatsune", "reference": { "type": "PubMed", "id": "18561946", "url": "https://pubmed.ncbi.nlm.nih.gov/18561946" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59595", "url": "https://www.uniprot.org/uniprotkb/P59595" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.18561946", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SARS-CoV envelope protein palmitoylation or nucleocapid association is not required for promoting virus-like particle production.", "journal": "Journal of biomedical science", "date": "2014", "authors": "Tseng YT, Wang SM, Huang KJ, Wang CT", "reference": { "type": "PubMed", "id": "24766657", "url": "https://pubmed.ncbi.nlm.nih.gov/24766657" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59595-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59637-1", "protein_name": "Envelope small membrane protein", "gene_name": "E", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59595", "url": "https://www.uniprot.org/uniprotkb/P59595" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.24766657", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Subcellular localization and membrane association of SARS-CoV 3a protein.", "journal": "Virus Res.", "date": "2005", "authors": "Yuan Xiaoling, Li Jianyong, Shan Yajun, Yang Zhen, Zhao Zhenhu, Chen Bo, Yao Zhenyu, Dong Bo, Wang Shengqi, Chen Jiapei, Cong Yuwen", "reference": { "type": "PubMed", "id": "15763150", "url": "https://pubmed.ncbi.nlm.nih.gov/15763150" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59596-1", "protein_name": "Membrane protein", "gene_name": "M", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59637-1", "protein_name": "Envelope small membrane protein", "gene_name": "E", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59596", "url": "https://www.uniprot.org/uniprotkb/P59596" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15763150", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of severe acute respiratory syndrome coronavirus membrane protein.", "journal": "FEBS letters", "date": "2006", "authors": "Voss D, Kern A, Traggiai E, Eickmann M, Stadler K, Lanzavecchia A, Becker S", "reference": { "type": "PubMed", "id": "16442106", "url": "https://pubmed.ncbi.nlm.nih.gov/16442106" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59596-1", "protein_name": "Membrane protein", "gene_name": "M", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59596", "url": "https://www.uniprot.org/uniprotkb/P59596" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 4, "start_aa": "Asn", "end_pos": 4, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn4", "evidence": [ { "id": "P59596", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P59596#ptm_processing" }, { "id": "19534833", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19534833" }, { "id": "GLY_000612", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000612" }, { "id": "GLY_000612", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000612" }, { "id": "16442106", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16442106" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P59596-1" } ], "record_id": "pubmed.16442106", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Studies on membrane topology, N-glycosylation and functionality of SARS-CoV membrane protein.", "journal": "Virology journal", "date": "2009", "authors": "Voss D, Pfefferle S, Drosten C, Stevermann L, Traggiai E, Lanzavecchia A, Becker S", "reference": { "type": "PubMed", "id": "19534833", "url": "https://pubmed.ncbi.nlm.nih.gov/19534833" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59596-1", "protein_name": "Membrane protein", "gene_name": "M", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59596", "url": "https://www.uniprot.org/uniprotkb/P59596" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 4, "start_aa": "Asn", "end_pos": 4, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn4", "evidence": [ { "id": "P59596", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P59596#ptm_processing" }, { "id": "19534833", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19534833" }, { "id": "GLY_000612", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000612" }, { "id": "GLY_000612", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000612" }, { "id": "16442106", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16442106" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P59596-1" } ], "record_id": "pubmed.19534833", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a novel protein 3a from severe acute respiratory syndrome coronavirus.", "journal": "FEBS Lett.", "date": "2004", "authors": "Yu Chia-Jung, Chen Yee-Chun, Hsiao Cheng-Hsiang, Kuo Tse-Chun, Chang Shin C, Lu Chun-Yi, Wei Wen-Chin, Lee Chia-Huei, Huang Li-Min, Chang Ming-Fu, Ho Hong-Nerng, Lee Fang-Jen S", "reference": { "type": "PubMed", "id": "15135062", "url": "https://pubmed.ncbi.nlm.nih.gov/15135062" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15135062", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Severe acute respiratory syndrome coronavirus 3a protein is a viral structural protein.", "journal": "J. Virol.", "date": "2005", "authors": "Ito Naoto, Mossel Eric C, Narayanan Krishna, Popov Vsevolod L, Huang Cheng, Inoue Taisuke, Peters Clarence J, Makino Shinji", "reference": { "type": "PubMed", "id": "15709039", "url": "https://pubmed.ncbi.nlm.nih.gov/15709039" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15709039", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The severe acute respiratory syndrome coronavirus 3a is a novel structural protein.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2005", "authors": "Shen Shuo, Lin Pi-Shiu, Chao Yu-Chan, Zhang Aihua, Yang Xiaoming, Lim Seng Gee, Hong Wanjin, Tan Yee-Joo", "reference": { "type": "PubMed", "id": "15781262", "url": "https://pubmed.ncbi.nlm.nih.gov/15781262" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15781262", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The 3a protein of severe acute respiratory syndrome-associated coronavirus induces apoptosis in Vero E6 cells.", "journal": "The Journal of general virology", "date": "2005-07", "authors": "Law Patrick T W, Wong Chi-Hang, Au Thomas C C, Chuck Chi-Pang, Kong Siu-Kai, Chan Paul K S, To Ka-Fai, Lo Anthony W I, Chan Judy Y W, Suen Yick-Keung, Chan H Y Edwin, Fung Kwok-Pui, Waye Mary M Y, Sung Joseph J Y, Lo Y M Dennis, Tsui Stephen K W", "reference": { "type": "PubMed", "id": "15958670", "url": "https://pubmed.ncbi.nlm.nih.gov/15958670" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.15958670", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The severe acute respiratory syndrome coronavirus 3a protein up-regulates expression of fibrinogen in lung epithelial cells.", "journal": "Journal of virology", "date": "2005-08", "authors": "Tan Yee-Joo, Tham Puay-Yoke, Chan Daphne Z L, Chou Chih-Fong, Shen Shuo, Fielding Burtram C, Tan Timothy H P, Lim Seng Gee, Hong Wanjin", "reference": { "type": "PubMed", "id": "16014971", "url": "https://pubmed.ncbi.nlm.nih.gov/16014971" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16014971", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Severe acute respiratory syndrome coronavirus 3a protein is released in membranous structures from 3a protein-expressing cells and infected cells.", "journal": "J. Virol.", "date": "2006", "authors": "Huang Cheng, Narayanan Krishna, Ito Naoto, Peters C J, Makino Shinji", "reference": { "type": "PubMed", "id": "16352545", "url": "https://pubmed.ncbi.nlm.nih.gov/16352545" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16352545", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Severe acute respiratory syndrome-associated coronavirus 3a protein forms an ion channel and modulates virus release.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Lu W, Zheng BJ, Xu K, Schwarz W, Du L, Wong CK, Chen J, Duan S, Deubel V, Sun B", "reference": { "type": "PubMed", "id": "16894145", "url": "https://pubmed.ncbi.nlm.nih.gov/16894145" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "mutagenesis": [ { "start_pos": 117, "end_pos": 117, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on polymerization.", "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" }, { "database": "PubMed", "id": "16894145", "url": "https://pubmed.ncbi.nlm.nih.gov/16894145" } ], "uniprot_canonical_ac": "P59632-1" }, { "start_pos": 121, "end_pos": 121, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on polymerization.", "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" }, { "database": "PubMed", "id": "16894145", "url": "https://pubmed.ncbi.nlm.nih.gov/16894145" } ], "uniprot_canonical_ac": "P59632-1" }, { "start_pos": 127, "end_pos": 127, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on polymerization.", "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" }, { "database": "PubMed", "id": "16894145", "url": "https://pubmed.ncbi.nlm.nih.gov/16894145" } ], "uniprot_canonical_ac": "P59632-1" }, { "start_pos": 130, "end_pos": 130, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on polymerization.", "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" }, { "database": "PubMed", "id": "16894145", "url": "https://pubmed.ncbi.nlm.nih.gov/16894145" } ], "uniprot_canonical_ac": "P59632-1" }, { "start_pos": 133, "end_pos": 133, "sequence_org": "C", "sequence_mut": "A", "comment": "Almost complete loss of polymerization ability.", "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" }, { "database": "PubMed", "id": "16894145", "url": "https://pubmed.ncbi.nlm.nih.gov/16894145" } ], "uniprot_canonical_ac": "P59632-1" }, { "start_pos": 148, "end_pos": 148, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on polymerization.", "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" }, { "database": "PubMed", "id": "16894145", "url": "https://pubmed.ncbi.nlm.nih.gov/16894145" } ], "uniprot_canonical_ac": "P59632-1" }, { "start_pos": 157, "end_pos": 157, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on polymerization.", "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" }, { "database": "PubMed", "id": "16894145", "url": "https://pubmed.ncbi.nlm.nih.gov/16894145" } ], "uniprot_canonical_ac": "P59632-1" }, { "start_pos": 81, "end_pos": 81, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on polymerization.", "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" }, { "database": "PubMed", "id": "16894145", "url": "https://pubmed.ncbi.nlm.nih.gov/16894145" } ], "uniprot_canonical_ac": "P59632-1" } ], "record_id": "pubmed.16894145", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The SARS Coronavirus 3a protein causes endoplasmic reticulum stress and induces ligand-independent downregulation of the type 1 interferon receptor.", "journal": "PloS one", "date": "2009-12-17", "authors": "Minakshi Rinki, Padhan Kartika, Rani Manjusha, Khan Nabab, Ahmad Faizan, Jameel Shahid", "reference": { "type": "PubMed", "id": "20020050", "url": "https://pubmed.ncbi.nlm.nih.gov/20020050" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59632-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59632", "url": "https://www.uniprot.org/uniprotkb/P59632" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.20020050", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nucleolar localization of non-structural protein 3b, a protein specifically encoded by the severe acute respiratory syndrome coronavirus.", "journal": "Virus Res.", "date": "2005", "authors": "Yuan Xiaoling, Yao Zhenyu, Shan Yajun, Chen Bo, Yang Zhen, Wu Jie, Zhao Zhenhu, Chen Jiapei, Cong Yuwen", "reference": { "type": "PubMed", "id": "16046244", "url": "https://pubmed.ncbi.nlm.nih.gov/16046244" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59633-1", "protein_name": "ORF3b protein", "gene_name": "3b", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59633", "url": "https://www.uniprot.org/uniprotkb/P59633" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16046244", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "G0/G1 arrest and apoptosis induced by SARS-CoV 3b protein in transfected cells.", "journal": "Virology journal", "date": "2005-08-17", "authors": "Yuan Xiaoling, Shan Yajun, Zhao Zhenhu, Chen Jiapei, Cong Yuwen", "reference": { "type": "PubMed", "id": "16107218", "url": "https://pubmed.ncbi.nlm.nih.gov/16107218" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59633-1", "protein_name": "ORF3b protein", "gene_name": "3b", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59633", "url": "https://www.uniprot.org/uniprotkb/P59633" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16107218", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mitochondrial location of severe acute respiratory syndrome coronavirus 3b protein.", "journal": "Molecules and cells", "date": "2006-04-30", "authors": "Yuan Xiaoling, Shan Yajun, Yao Zhenyu, Li Jianyong, Zhao Zhenhu, Chen Jiapei, Cong Yuwen", "reference": { "type": "PubMed", "id": "16682811", "url": "https://pubmed.ncbi.nlm.nih.gov/16682811" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59633-1", "protein_name": "ORF3b protein", "gene_name": "3b", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59633", "url": "https://www.uniprot.org/uniprotkb/P59633" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16682811", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A severe acute respiratory syndrome-associated coronavirus-specific protein enhances virulence of an attenuated murine coronavirus.", "journal": "J. Virol.", "date": "2005", "authors": "Pewe Lecia, Zhou Haixia, Netland Jason, Tangudu Chandra, Olivares Heidi, Shi Lei, Look Dwight, Gallagher Thomas, Perlman Stanley", "reference": { "type": "PubMed", "id": "16103185", "url": "https://pubmed.ncbi.nlm.nih.gov/16103185" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59634-1", "protein_name": "ORF6 protein", "gene_name": "6", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59634", "url": "https://www.uniprot.org/uniprotkb/P59634" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16103185", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The putative protein 6 of the severe acute respiratory syndrome-associated coronavirus: expression and functional characterization.", "journal": "FEBS Lett.", "date": "2005", "authors": "Geng Hua, Liu Yuet-Man, Chan Wai-Sing, Lo Anthony Wing-Ip, Au Deborah Mun-Yee, Waye Mary Miu-Yee, Ho Yuan-Yuan", "reference": { "type": "PubMed", "id": "16310783", "url": "https://pubmed.ncbi.nlm.nih.gov/16310783" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59634-1", "protein_name": "ORF6 protein", "gene_name": "6", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59634", "url": "https://www.uniprot.org/uniprotkb/P59634" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.16310783", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Severe acute respiratory syndrome coronavirus protein 6 accelerates murine coronavirus infections.", "journal": "J. Virol.", "date": "2007", "authors": "Tangudu Chandra, Olivares Heidi, Netland Jason, Perlman Stanley, Gallagher Thomas", "reference": { "type": "PubMed", "id": "17108045", "url": "https://pubmed.ncbi.nlm.nih.gov/17108045" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59634-1", "protein_name": "ORF6 protein", "gene_name": "6", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59634", "url": "https://www.uniprot.org/uniprotkb/P59634" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.17108045", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A putative diacidic motif in the SARS-CoV ORF6 protein influences its subcellular localization and suppression of expression of co-transfected expression constructs.", "journal": "BMC research notes", "date": "2011", "authors": "Gunalan V, Mirazimi A, Tan YJ", "reference": { "type": "PubMed", "id": "22026976", "url": "https://pubmed.ncbi.nlm.nih.gov/22026976" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59634-1", "protein_name": "ORF6 protein", "gene_name": "6", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59634", "url": "https://www.uniprot.org/uniprotkb/P59634" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "mutagenesis": [ { "start_pos": 49, "end_pos": 52, "sequence_org": "YSEL", "sequence_mut": "AAAA", "comment": "No effect in the suppression of nuclear gene expression.", "evidence": [ { "database": "UniProtKB", "id": "P59634", "url": "https://www.uniprot.org/uniprotkb/P59634" }, { "database": "PubMed", "id": "22026976", "url": "https://pubmed.ncbi.nlm.nih.gov/22026976" } ], "uniprot_canonical_ac": "P59634-1" }, { "start_pos": 53, "end_pos": 56, "sequence_org": "DDEE", "sequence_mut": "AAAA", "comment": "Reduction in the suppression of nuclear gene expression.", "evidence": [ { "database": "UniProtKB", "id": "P59634", "url": "https://www.uniprot.org/uniprotkb/P59634" }, { "database": "PubMed", "id": "22026976", "url": "https://pubmed.ncbi.nlm.nih.gov/22026976" } ], "uniprot_canonical_ac": "P59634-1" } ], "record_id": "pubmed.22026976", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Severe acute respiratory syndrome coronavirus accessory proteins 6 and 9b interact in vivo.", "journal": "Virus Res.", "date": "2012", "authors": "Calvo Enrique, DeDiego Marta L, Garc\u00eda Pilar, L\u00f3pez Juan A, P\u00e9rez-Bre\u00f1a Pilar, Falc\u00f3n Ana", "reference": { "type": "PubMed", "id": "22820404", "url": "https://pubmed.ncbi.nlm.nih.gov/22820404" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59634-1", "protein_name": "ORF6 protein", "gene_name": "6", "tax_name": "SARS-CoV" }, { "uniprot_canonical_ac": "P59636-1", "protein_name": "ORF9b protein", "gene_name": "9b", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59634", "url": "https://www.uniprot.org/uniprotkb/P59634" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "record_id": "pubmed.22820404", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of a unique group-specific protein (U122) of the severe acute respiratory syndrome coronavirus.", "journal": "Journal of virology", "date": "2004", "authors": "Fielding BC, Tan YJ, Shuo S, Tan TH, Ooi EE, Lim SG, Hong W, Goh PY", "reference": { "type": "PubMed", "id": "15220404", "url": "https://pubmed.ncbi.nlm.nih.gov/15220404" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59635-1", "protein_name": "ORF7a protein", "gene_name": "7a", "tax_name": "SARS-CoV" } ], "species": [ { "name": "Severe acute respiratory syndrome-related coronavirus", "taxid": 694009, "evidence": [ { "database": "UniProtKB", "id": "P59635", "url": "https://www.uniprot.org/uniprotkb/P59635" } ], "common_name": "SARS-CoV", "glygen_name": "HCoV-SARS", "reference_species": "Severe acute respiratory syndrome-related coronavirus [694009]" } ], "mutagenesis": [ { "start_pos": 118, "end_pos": 120, "sequence_org": "KRK", "sequence_mut": "ERE", "comment": "Induces rapid exit from the endoplasmic reticulum.", "evidence": [ { "database": "UniProtKB", "id": "P59635", "url": "https://www.uniprot.org/uniprotkb/P59635" }, { "database": "PubMed", "id": "15220404", "url": "https://pubmed.ncbi.nlm.nih.gov/15220404" } ], "uniprot_canonical_ac": "P59635-1" }, { "start_pos": 14, "end_pos": 18, "sequence_org": "SCELY", "sequence_mut": "LLLLL", "comment": "Complete loss of signal sequence cleavage.", "evidence": [ { "database": "UniProtKB", "id": "P59635", "url": "https://www.uniprot.org/uniprotkb/P59635" }, { "database": "PubMed", "id": "15220404", "url": "https://pubmed.ncbi.nlm.nih.gov/15220404" } ], "uniprot_canonical_ac": "P59635-1" } ], "record_id": "pubmed.15220404", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]