[ { "title": "Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis.", "journal": "Genes & development", "date": "2002-05-15", "authors": "Holm Magnus, Ma Li-Geng, Qu Li-Jia, Deng Xing-Wang", "reference": { "type": "PubMed", "id": "12023303", "url": "https://pubmed.ncbi.nlm.nih.gov/12023303" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W191-1", "protein_name": "Transcription factor HY5-like", "gene_name": "HYH", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O24646-1", "protein_name": "Transcription factor HY5", "gene_name": "HY5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P43254-1", "protein_name": "E3 ubiquitin-protein ligase COP1", "gene_name": "COP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W191", "url": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "N-acetylglucosamine-1-P uridylyltransferase 1 and 2 are required for gametogenesis and embryo development in Arabidopsis thaliana.", "journal": "Plant & cell physiology", "date": "2014-11", "authors": "Chen Ya-Huei, Shen Hwei-Ling, Hsu Pei-Jung, Hwang San-Gwang, Cheng Wan-Hsing", "reference": { "type": "PubMed", "id": "25231969", "url": "https://pubmed.ncbi.nlm.nih.gov/25231969" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q940S3-1", "protein_name": "UDP-N-acetylglucosamine diphosphorylase 1", "gene_name": "GLCNAC1PUT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64765-1", "protein_name": "UDP-N-acetylglucosamine diphosphorylase 2", "gene_name": "GLCNAC1PUT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Salt tolerance (STO), a stress-related protein, has a major role in light signalling.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-08", "authors": "Indorf Martin, Cordero Julio, Neuhaus Gunther, Rodr\u00edguez-Franco Marta", "reference": { "type": "PubMed", "id": "17605755", "url": "https://pubmed.ncbi.nlm.nih.gov/17605755" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96288-1", "protein_name": "B-box zinc finger protein 24", "gene_name": "BBX24; STO", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q96288", "url": "https://www.uniprot.org/uniprotkb/Q96288" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], 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"date": "2008-06", "authors": "Kumagai Takeshi, Ito Shogo, Nakamichi Norihito, Niwa Yusuke, Murakami Masaya, Yamashino Takafumi, Mizuno Takeshi", "reference": { "type": "PubMed", "id": "18540109", "url": "https://pubmed.ncbi.nlm.nih.gov/18540109" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96288-1", "protein_name": "B-box zinc finger protein 24", "gene_name": "BBX24; STO", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "C0SVM5-1", "protein_name": "B-box zinc finger protein 19", "gene_name": "BBX19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYM2-1", "protein_name": "B-box zinc finger protein 22", "gene_name": "BBX22; LZF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SID1-1", "protein_name": "B-box zinc finger protein 25", "gene_name": "BBX25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJU5-1", "protein_name": "B-box zinc finger protein 18", "gene_name": "BBX18", "tax_name": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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Se Won, Son Young Sim, Jeong Joa, Shiina Takashi, Bahk Jeong Dong", "reference": { "type": "PubMed", "id": "18682427", "url": "https://pubmed.ncbi.nlm.nih.gov/18682427" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M591-1", "protein_name": "Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic", "gene_name": "CRD1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M591", "url": "https://www.uniprot.org/uniprotkb/Q9M591" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18682427", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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"evidence": [ { "database": "UniProtKB", "id": "Q9M591", "url": "https://www.uniprot.org/uniprotkb/Q9M591" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22212719", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Isolation of molecular markers for salt stress responses in Arabidopsis thaliana.", "journal": "Mol. Cells", "date": "1997", "authors": "Pih K T, Jang H J, Kang S G, Piao H L, Hwang I", "reference": { "type": "PubMed", "id": "9339905", "url": "https://pubmed.ncbi.nlm.nih.gov/9339905" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M591-1", "protein_name": "Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic", "gene_name": "CRD1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M591", "url": "https://www.uniprot.org/uniprotkb/Q9M591" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9339905", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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thermal stress.", "journal": "Cell reports", "date": "2013-12-12", "authors": "Merret R\u00e9my, Descombin Julie, Juan Yu-ting, Favory Jean-Jacques, Carpentier Marie-Christine, Chaparro Cristian, Charng Yee-yung, Deragon Jean-Marc, Bousquet-Antonelli C\u00e9cile", "reference": { "type": "PubMed", "id": "24332370", "url": "https://pubmed.ncbi.nlm.nih.gov/24332370" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q940X9-1", "protein_name": "La-related protein 1A", "gene_name": "LARP1A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940X9", "url": "https://www.uniprot.org/uniprotkb/Q940X9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24332370", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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U.S.A.", "date": "2007", "authors": "Allen Robert S, Li Junyan, Stahle Melissa I, Dubrou\u00e9 Aur\u00e9lie, Gubler Frank, Millar Anthony A", "reference": { "type": "PubMed", "id": "17916625", "url": "https://pubmed.ncbi.nlm.nih.gov/17916625" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W1W6-1", "protein_name": "Transcription factor MYB33", "gene_name": "MYB33", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FR97-1", "protein_name": "Transcription factor MYB65", "gene_name": "MYB65", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W1W6", "url": "https://www.uniprot.org/uniprotkb/Q8W1W6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17916625", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the three Arabidopsis thaliana RAD21 cohesins reveals differential responses to ionizing radiation.", "journal": "Journal of experimental botany", "date": "2006", "authors": "da Costa-Nunes J A, Bhatt A M, O'Shea S, West C E, Bray C M, Grossniklaus U, Dickinson H G", "reference": { "type": "PubMed", "id": "16488915", "url": "https://pubmed.ncbi.nlm.nih.gov/16488915" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W1Y0-1", "protein_name": "Sister chromatid cohesion 1 protein 4", "gene_name": "SYN4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W1Y0", "url": "https://www.uniprot.org/uniprotkb/Q8W1Y0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16488915", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cohesin gene defects may impair sister chromatid alignment and genome stability in Arabidopsis thaliana.", "journal": "Chromosoma", "date": "2009-10", "authors": "Schubert Veit, Weissleder Andrea, Ali Hoda, Fuchs J\u00f6rg, Lermontova Inna, Meister Armin, Schubert Ingo", "reference": { "type": "PubMed", "id": "19533160", "url": "https://pubmed.ncbi.nlm.nih.gov/19533160" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W1Y0-1", "protein_name": "Sister chromatid cohesion 1 protein 4", "gene_name": "SYN4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82265-1", "protein_name": "Sister-chromatid cohesion protein 3", "gene_name": "SCC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56YN8-1", "protein_name": "Structural maintenance of chromosomes protein 3", "gene_name": "SMC3; TTN7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6Q1P4-1", "protein_name": "Structural maintenance of chromosomes protein 1", "gene_name": "SMC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A5HEI1-1", "protein_name": "Sister chromatid cohesion protein SCC2", "gene_name": "SCC2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W1Y0", "url": "https://www.uniprot.org/uniprotkb/Q8W1Y0" } ], "common_name": "Mouse-ear cress", "glygen_name": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis COP9 signalosome subunit 7 is a model PCI domain protein with subdomains involved in COP9 signalosome assembly.", "journal": 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"Q8W206", "url": "https://www.uniprot.org/uniprotkb/Q8W206" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 12, "end_pos": 12, "sequence_org": "D", "sequence_mut": "A", "comment": "No effect on the interaction with CSN8.", "evidence": [ { "database": "UniProtKB", "id": "Q94JU3", "url": "https://www.uniprot.org/uniprotkb/Q94JU3" }, { "database": "PubMed", "id": "18854373", "url": "https://pubmed.ncbi.nlm.nih.gov/18854373" } ], "uniprot_canonical_ac": "Q94JU3-1" }, { "start_pos": 144, "end_pos": 144, "sequence_org": "K", "sequence_mut": "A", "comment": "No effect on the interaction with CSN1, but decreased interaction with CSN8.", "evidence": [ { "database": "UniProtKB", "id": "Q94JU3", "url": "https://www.uniprot.org/uniprotkb/Q94JU3" }, { "database": "PubMed", "id": "18854373", "url": "https://pubmed.ncbi.nlm.nih.gov/18854373" } ], "uniprot_canonical_ac": "Q94JU3-1" }, { "start_pos": 153, "end_pos": 153, "sequence_org": "E", "sequence_mut": "A", "comment": "No effect on the interactions with CSN1 and CSN8.", "evidence": [ { "database": "UniProtKB", "id": "Q94JU3", "url": "https://www.uniprot.org/uniprotkb/Q94JU3" }, { "database": "PubMed", "id": "18854373", "url": "https://pubmed.ncbi.nlm.nih.gov/18854373" } ], "uniprot_canonical_ac": "Q94JU3-1" }, { "start_pos": 44, "end_pos": 44, "sequence_org": "E", "sequence_mut": "A", "comment": "Decreased interaction with CSN8. Strongly decreased interaction with CSN8; when associated with A-71.", "evidence": [ { "database": "UniProtKB", "id": "Q94JU3", "url": "https://www.uniprot.org/uniprotkb/Q94JU3" }, { "database": "PubMed", "id": "18854373", "url": "https://pubmed.ncbi.nlm.nih.gov/18854373" } ], "uniprot_canonical_ac": "Q94JU3-1" }, { "start_pos": 71, "end_pos": 71, "sequence_org": "H", "sequence_mut": "A", "comment": "Decreased interaction with CSN8. Strongly decreased interaction with CSN8; when associated with A-44.", "evidence": [ { "database": "UniProtKB", "id": "Q94JU3", "url": "https://www.uniprot.org/uniprotkb/Q94JU3" }, { "database": "PubMed", "id": "18854373", "url": "https://pubmed.ncbi.nlm.nih.gov/18854373" } ], "uniprot_canonical_ac": "Q94JU3-1" } ], "record_id": "pubmed.18854373", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An Arabidopsis circadian clock component interacts with both CRY1 and phyB.", "journal": "Nature", "date": "2001", "authors": "Jarillo J A, Capel J, Tang R H, Yang H Q, Alonso J M, Ecker J R, Cashmore A R", "reference": { "type": "PubMed", "id": "11260718", "url": "https://pubmed.ncbi.nlm.nih.gov/11260718" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W420-1", "protein_name": "Adagio protein 2", "gene_name": "ADO2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P14713-1", "protein_name": "Phytochrome B", "gene_name": "PHYB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BT6-1", "protein_name": "Adagio protein 1", "gene_name": "ADO1; ZTL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q43125-1", "protein_name": "Cryptochrome-1", "gene_name": "CRY1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9W9-1", "protein_name": "Adagio protein 3", "gene_name": "ADO3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W420", "url": "https://www.uniprot.org/uniprotkb/Q8W420" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11260718", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A role for LKP2 in the circadian clock of Arabidopsis.", "journal": "The Plant cell", "date": "2001-12", "authors": "Schultz T F, Kiyosue T, Yanovsky M, Wada M, Kay S A", "reference": { "type": "PubMed", "id": "11752379", "url": "https://pubmed.ncbi.nlm.nih.gov/11752379" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W420-1", "protein_name": "Adagio protein 2", "gene_name": "ADO2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W420", "url": "https://www.uniprot.org/uniprotkb/Q8W420" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11752379", "abstract": "", "glycosylation": 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resistance` protein of Arabidopsis thaliana, DIR1, reveals a new type of lipid transfer protein.", "journal": "Protein science : a publication of the Protein Society", "date": "2008-09", "authors": "Lascombe Marie-Bernard, Bakan B\u00e9n\u00e9dicte, Buhot Nathalie, Marion Didier, Blein Jean-Pierre, Larue Val\u00e9ry, Lamb Chris, Prang\u00e9 Thierry", "reference": { "type": "PubMed", "id": "18552128", "url": "https://pubmed.ncbi.nlm.nih.gov/18552128" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W453-1", "protein_name": "Putative lipid-transfer protein DIR1", "gene_name": "DIR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W453", "url": "https://www.uniprot.org/uniprotkb/Q8W453" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18552128", "abstract": "", 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Wang Caixia, Chanda Bidisha, Gifford Andrew N, Fowler Joanna S, Navarre Duroy, Kachroo Aardra, Kachroo Pradeep", "reference": { "type": "PubMed", "id": "23602565", "url": "https://pubmed.ncbi.nlm.nih.gov/23602565" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W453-1", "protein_name": "Putative lipid-transfer protein DIR1", "gene_name": "DIR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SU35-1", "protein_name": "pEARLI1-like lipid transfer protein 1", "gene_name": "AZI1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W453", "url": "https://www.uniprot.org/uniprotkb/Q8W453" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23602565", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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Plant", "date": "2009", "authors": "Boij Patrik, Patel Ramesh, Garcia Christel, Jarvis Paul, Aronsson Henrik", "reference": { "type": "PubMed", "id": "19995737", "url": "https://pubmed.ncbi.nlm.nih.gov/19995737" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W496-1", "protein_name": "Protochlorophyllide-dependent translocon component 52, chloroplastic", "gene_name": "PTC52", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SK50-1", "protein_name": "Protein TIC 55, chloroplastic", "gene_name": "TIC55", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W496", "url": "https://www.uniprot.org/uniprotkb/Q8W496" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19995737", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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seed development in Arabidopsis thaliana.", "journal": "Genetics", "date": "2001-12", "authors": "McElver J, Tzafrir I, Aux G, Rogers R, Ashby C, Smith K, Thomas C, Schetter A, Zhou Q, Cushman M A, Tossberg J, Nickle T, Levin J Z, Law M, Meinke D, Patton D", "reference": { "type": "PubMed", "id": "11779812", "url": "https://pubmed.ncbi.nlm.nih.gov/11779812" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W4E1-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 47, mitochondrial", "gene_name": "RH47", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B0F481-1", "protein_name": "Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial", "gene_name": "BIO3-BIO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B9DFG3-1", "protein_name": "DExH-box ATP-dependent RNA helicase DExH15 chloroplastic", "gene_name": "ISE2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a developmental transition in plasmodesmatal function during embryogenesis in Arabidopsis thaliana.", "journal": "Development (Cambridge, England)", "date": "2002-03", "authors": "Kim Insoon, Hempel Frederick D, Sha Kyle, Pfluger Jennifer, Zambryski Patricia C", "reference": { "type": "PubMed", "id": "11874921", "url": "https://pubmed.ncbi.nlm.nih.gov/11874921" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W4E1-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 47, mitochondrial", "gene_name": "RH47", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B9DFG3-1", "protein_name": "DExH-box ATP-dependent RNA helicase DExH15 chloroplastic", "gene_name": "ISE2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W4E1", "url": "https://www.uniprot.org/uniprotkb/Q8W4E1" } ], 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of the plant DEAD-box protein ISE1 leads to defective mitochondria and increased cell-to-cell transport via plasmodesmata.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-10-06", "authors": "Stonebloom Solomon, Burch-Smith Tessa, Kim Insoon, Meinke David, Mindrinos Michael, Zambryski Patricia", "reference": { "type": "PubMed", "id": "19805190", "url": "https://pubmed.ncbi.nlm.nih.gov/19805190" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W4E1-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 47, mitochondrial", "gene_name": "RH47", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W4E1", "url": "https://www.uniprot.org/uniprotkb/Q8W4E1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 228, "end_pos": 228, "sequence_org": "G", "sequence_mut": "E", "comment": "In ise1-1; 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