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activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 186, "end_pos": 186, "sequence_org": "T", "sequence_mut": "I", "comment": "Loss of dimerization and catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 203, "end_pos": 203, "sequence_org": "K", "sequence_mut": "I", "comment": "Loss of dimerization and catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": 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"No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 226, "end_pos": 226, "sequence_org": "H", "sequence_mut": "L", "comment": "Loss of catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 248, "end_pos": 248, "sequence_org": "H", "sequence_mut": "L", "comment": "Loss of dimerization and catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": 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No effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 252, "end_pos": 252, "sequence_org": "R", "sequence_mut": "", "comment": "Loss of catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 253, "end_pos": 253, "sequence_org": "Y", "sequence_mut": "S", "comment": "Reduced catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 25, "end_pos": 25, "sequence_org": "C", "sequence_mut": "G", "comment": "Reduced catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 270, "end_pos": 280, "sequence_org": "EGRVFALTQGF", "sequence_mut": "", "comment": "Loss of dimerization and catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 40, "end_pos": 40, "sequence_org": "C", "sequence_mut": "G", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 51, "end_pos": 51, "sequence_org": "F", "sequence_mut": "L", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 51, "end_pos": 60, "sequence_org": "FISHSHMDHI", "sequence_mut": "", "comment": "Loss of tRNA binding, but no effect on dimerization.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 54, "end_pos": 54, "sequence_org": "H", "sequence_mut": "L", "comment": "Loss of catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 56, "end_pos": 56, "sequence_org": "H", "sequence_mut": "L", "comment": "Loss of catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 58, "end_pos": 58, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 59, "end_pos": 59, "sequence_org": "H", "sequence_mut": "L", "comment": "Loss of dimerization and catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://pubmed.ncbi.nlm.nih.gov/16118225" } ], "uniprot_canonical_ac": "Q8LGU7-1" }, { "start_pos": 62, "end_pos": 62, "sequence_org": "G", "sequence_mut": "V", "comment": "Reduced catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": 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"table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Metal requirements and phosphodiesterase activity of tRNase Z enzymes.", "journal": "Biochemistry", "date": "2007-12-25", "authors": "Sp\u00e4th Bettina, Settele Florian, Schilling Oliver, D'Angelo Igor, Vogel Andreas, Feldmann Ingo, Meyer-Klaucke Wolfram, Marchfelder Anita", "reference": { "type": "PubMed", "id": "18052196", "url": "https://pubmed.ncbi.nlm.nih.gov/18052196" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LGU7-1", "protein_name": "tRNase Z TRZ1", "gene_name": "TRZ1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18052196", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006-05-02", "authors": "Morales-Ruiz Teresa, Ortega-Galisteo Ana Pilar, Ponferrada-Mar\u00edn Mar\u00eda Isabel, Mart\u00ednez-Mac\u00edas Mar\u00eda Isabel, Ariza Rafael R, Rold\u00e1n-Arjona Teresa", "reference": { "type": "PubMed", "id": "16624880", "url": "https://pubmed.ncbi.nlm.nih.gov/16624880" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LK56-3", "protein_name": "Transcriptional activator DEMETER", "gene_name": "DME", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJQ6-1", "protein_name": "DNA glycosylase/AP lyase 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"Peroxisomal Acyl-CoA synthetase activity is essential for seedling development in Arabidopsis thaliana.", "journal": "The Plant cell", "date": "2004-02", "authors": "Fulda Martin, Schnurr Judy, Abbadi Amine, Heinz Ernst, Browse John", "reference": { "type": "PubMed", "id": "14742880", "url": "https://pubmed.ncbi.nlm.nih.gov/14742880" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LKS5-1", "protein_name": "Long chain acyl-CoA synthetase 7, peroxisomal", "gene_name": "LACS7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LPS1-1", "protein_name": "Long chain acyl-CoA synthetase 6, peroxisomal", "gene_name": "LACS6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LKS5", "url": "https://www.uniprot.org/uniprotkb/Q8LKS5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } 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"Plant Reprod.", "date": "2014", "authors": "Oh Sung Aeong, Bourdon Val\u00e9rie, Dickinson Hugh G, Twell David, Park Soon Ki", "reference": { "type": "PubMed", "id": "24146312", "url": "https://pubmed.ncbi.nlm.nih.gov/24146312" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LNZ2-1", "protein_name": "Kinesin-like protein KIN-7B", "gene_name": "KIN7B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q2QAV0-1", "protein_name": "Serine/threonine-protein kinase TIO", "gene_name": "TIO", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LNZ2", "url": "https://www.uniprot.org/uniprotkb/Q8LNZ2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24146312", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": 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Biol. Chem.", "date": "2003", "authors": "Piotrowski Markus, Janowitz Tim, Kneifel Helmut", "reference": { "type": "PubMed", "id": "12435743", "url": "https://pubmed.ncbi.nlm.nih.gov/12435743" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RUF8-1", "protein_name": "Omega-amidase, chloroplastic", "gene_name": "NLP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VYF5-2", "protein_name": "N-carbamoylputrescine amidase", "gene_name": "CPA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94JV5-1", "protein_name": "Deaminated glutathione amidase, chloroplastic/cytosolic", "gene_name": "NLP2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RUF8", "url": "https://www.uniprot.org/uniprotkb/Q8RUF8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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