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dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC16-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3G", "gene_name": "APOBEC3G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31941-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3A", "gene_name": "APOBEC3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRW3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3C", "gene_name": "APOBEC3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11863358", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Messenger RNA editing in mammals: new members of the APOBEC family seeking roles in the family business.", "journal": "Trends Genet.", "date": "2003", "authors": "Wedekind JE, Dance GS, Sowden MP, Smith HC", "reference": { "type": "PubMed", "id": "12683974", "url": "https://pubmed.ncbi.nlm.nih.gov/12683974" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NTF7-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3H", "gene_name": "APOBEC3H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUX4-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3F", "gene_name": "APOBEC3F", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC16-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3G", "gene_name": "APOBEC3G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31941-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3A", "gene_name": "APOBEC3A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": 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0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "APOBEC3B and APOBEC3C are potent inhibitors of simian immunodeficiency virus replication.", "journal": "The Journal of biological chemistry", "date": "2004-12-17", "authors": "Yu Qin, Chen Darlene, K\u00f6nig Renate, Mariani Roberto, Unutmaz Derya, Landau Nathaniel R", "reference": { "type": "PubMed", "id": "15466872", "url": "https://pubmed.ncbi.nlm.nih.gov/15466872" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRW3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3C", "gene_name": "APOBEC3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15466872", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor.", "journal": "RNA (New York, N.Y.)", "date": "2005", "authors": "Maris C, Masse J, Chester A, Navaratnam N, Allain FH", "reference": { "type": "PubMed", "id": "15659357", "url": "https://pubmed.ncbi.nlm.nih.gov/15659357" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NTF7-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3H", "gene_name": "APOBEC3H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQ94-1", "protein_name": "APOBEC1 complementation factor", "gene_name": "A1CF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WW27-1", "protein_name": "Putative deaminase APOBEC-4", "gene_name": "APOBEC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41238-1", "protein_name": "C->U-editing enzyme APOBEC-1", "gene_name": "APOBEC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31941-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3A", "gene_name": "APOBEC3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y235-1", "protein_name": "C->U-editing enzyme APOBEC-2", "gene_name": "APOBEC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRW3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3C", "gene_name": "APOBEC3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15659357", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Population stratification of a common APOBEC gene deletion polymorphism.", "journal": "PLoS genetics", "date": "2007", "authors": "Kidd JM, Newman TL, Tuzun E, Kaul R, Eichler EE", "reference": { "type": "PubMed", "id": "17447845", "url": "https://pubmed.ncbi.nlm.nih.gov/17447845" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17447845", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hepatitis B: modern concepts in pathogenesis--APOBEC3 cytidine deaminases as effectors in innate immunity against the hepatitis B virus.", "journal": "Curr. Opin. Infect. Dis.", "date": "2008", "authors": "Bonvin Marianne, Greeve Jobst", "reference": { "type": "PubMed", "id": "18448976", "url": "https://pubmed.ncbi.nlm.nih.gov/18448976" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUX4-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3F", "gene_name": "APOBEC3F", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC16-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3G", "gene_name": "APOBEC3G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRW3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3C", "gene_name": "APOBEC3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18448976", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two regions within the amino-terminal half of APOBEC3G cooperate to determine cytoplasmic localization.", "journal": "J. Virol.", "date": "2008", "authors": "Stenglein MD, Matsuo H, Harris RS", "reference": { "type": "PubMed", "id": "18667511", "url": "https://pubmed.ncbi.nlm.nih.gov/18667511" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC16-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3G", "gene_name": "APOBEC3G", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18667511", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NTF7-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3H", "gene_name": "APOBEC3H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUX4-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3F", "gene_name": "APOBEC3F", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31941-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3A", "gene_name": "APOBEC3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRW3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3C", "gene_name": "APOBEC3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20062055", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Quantitative profiling of the full APOBEC3 mRNA repertoire in lymphocytes and tissues: implications for HIV-1 restriction.", "journal": "Nucleic Acids Res.", "date": "2010", "authors": "Refsland Eric W, Stenglein Mark D, Shindo Keisuke, Albin John S, Brown William L, Harris Reuben S", "reference": { "type": "PubMed", "id": "20308164", "url": "https://pubmed.ncbi.nlm.nih.gov/20308164" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NTF7-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3H", "gene_name": "APOBEC3H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUX4-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3F", "gene_name": "APOBEC3F", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC16-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3G", "gene_name": "APOBEC3G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31941-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3A", "gene_name": "APOBEC3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRW3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3C", "gene_name": "APOBEC3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20308164", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human and rhesus APOBEC3D, APOBEC3F, APOBEC3G, and APOBEC3H demonstrate a conserved capacity to restrict Vif-deficient HIV-1.", "journal": "J. Virol.", "date": "2011", "authors": "Hultquist Judd F, Lengyel Joy A, Refsland Eric W, LaRue Rebecca S, Lackey Lela, Brown William L, Harris Reuben S", "reference": { "type": "PubMed", "id": "21835787", "url": "https://pubmed.ncbi.nlm.nih.gov/21835787" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NTF7-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3H", "gene_name": "APOBEC3H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUX4-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3F", "gene_name": "APOBEC3F", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC16-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3G", "gene_name": "APOBEC3G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31941-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3A", "gene_name": "APOBEC3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRW3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3C", "gene_name": "APOBEC3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21835787", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functions and regulation of the APOBEC family of proteins.", "journal": "Semin. Cell Dev. Biol.", "date": "2012", "authors": "Smith Harold C, Bennett Ryan P, Kizilyer Ayse, McDougall William M, Prohaska Kimberly M", "reference": { "type": "PubMed", "id": "22001110", "url": "https://pubmed.ncbi.nlm.nih.gov/22001110" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NTF7-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3H", "gene_name": "APOBEC3H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUX4-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3F", "gene_name": "APOBEC3F", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC16-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3G", "gene_name": "APOBEC3G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31941-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3A", "gene_name": "APOBEC3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRW3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3C", "gene_name": "APOBEC3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22001110", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "APOBEC3A, APOBEC3B, and APOBEC3H haplotype 2 restrict human T-lymphotropic virus type 1.", "journal": "Journal of virology", "date": "2012-06", "authors": "Ooms Marcel, Krikoni Aikaterini, Kress Andrea K, Simon Viviana, M\u00fcnk Carsten", "reference": { "type": "PubMed", "id": "22457529", "url": "https://pubmed.ncbi.nlm.nih.gov/22457529" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NTF7-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3H", "gene_name": "APOBEC3H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31941-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3A", "gene_name": "APOBEC3A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22457529", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Retroelements versus APOBEC3 family members: No great escape from the magnificent seven.", "journal": "Front. Microbiol.", "date": "2012", "authors": "Arias Juan F, Koyama Takayoshi, Kinomoto Masanobu, Tokunaga Kenzo", "reference": { "type": "PubMed", "id": "22912627", "url": "https://pubmed.ncbi.nlm.nih.gov/22912627" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NTF7-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3H", "gene_name": "APOBEC3H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUX4-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3F", "gene_name": "APOBEC3F", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC16-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3G", "gene_name": "APOBEC3G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31941-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3A", "gene_name": "APOBEC3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRW3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3C", "gene_name": "APOBEC3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22912627", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", 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"The role of APOBEC3B in lung tumor evolution and targeted cancer therapy resistance.", "journal": "Nature genetics", "date": "2024-01", "authors": "Caswell Deborah R, Gui Philippe, Mayekar Manasi K, Law Emily K, Pich Oriol, Bailey Chris, Boumelha Jesse, Kerr D Lucas, Blakely Collin M, Manabe Tadashi, Martinez-Ruiz Carlos, Bakker Bjorn, De Dios Palomino Villcas Juan, I Vokes Natalie, Dietzen Michelle, Angelova Mihaela, Gini Beatrice, Tamaki Whitney, Allegakoen Paul, Wu Wei, Humpton Timothy J, Hill William, Tomaschko Mona, Lu Wei-Ting, Haderk Franziska, Al Bakir Maise, Nagano Ai, Gimeno-Valiente Francisco, de Carn\u00e9 Tr\u00e9cesson Sophie, Vendramin Roberto, Barb\u00e8 Vittorio, Mugabo Miriam, Weeden Clare E, Rowan Andrew, McCoach Caroline E, Almeida Bruna, Green Mary, Gomez Carlos, Nanjo Shigeki, Barbosa Dora, Moore Chris, Przewrocka Joanna, Black James R M, Gr\u00f6nroos Eva, Suarez-Bonnet Alejandro, Priestnall Simon L, Zverev Caroline, Lighterness Scott, Cormack James, Olivas Victor, Cech Lauren, Andrews Trisha, Rule Brandon, Jiao Yuwei, Zhang Xinzhu, Ashford Paul, Durfee Cameron, Venkatesan Subramanian, Temiz Nuri Alpay, Tan Lisa, Larson Lindsay K, Argyris Prokopios P, Brown William L, Yu Elizabeth A, Rotow Julia K, Guha Udayan, Roper Nitin, Yu Johnny, Vogel Rachel I, Thomas Nicholas J, Marra Antonio, Selenica Pier, Yu Helena, Bakhoum Samuel F, Chew Su Kit, Reis-Filho Jorge S, Jamal-Hanjani Mariam, Vousden Karen H, McGranahan Nicholas, Van Allen Eliezer M, Kanu Nnennaya, Harris Reuben S, Downward Julian, Bivona Trever G, Swanton Charles", "reference": { "type": "PubMed", "id": "38049664", "url": "https://pubmed.ncbi.nlm.nih.gov/38049664" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": 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potentially associate with COVID-19 severity in populations with African ancestry.", "journal": "Scientific reports", "date": "2023-12-17", "authors": "Zhang Ke, Chen Fang, Shen Hu-Yan, Zhang Ping-Ping, Gao Han, Peng Hong, Luo Yu-Si, Cheng Zhong-Shan", "reference": { "type": "PubMed", "id": "38105291", "url": "https://pubmed.ncbi.nlm.nih.gov/38105291" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UH17-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3B", "gene_name": "APOBEC3B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UH17", "url": "https://www.uniprot.org/uniprotkb/Q9UH17" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38105291", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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}, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of the protein kinase mutated in Peutz-Jeghers cancer syndrome, LKB1/STK11, at Ser431 by p90(RSK) and cAMP-dependent protein kinase, but not its farnesylation at Cys(433), is essential for LKB1 to suppress cell vrowth.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Sapkota GP, Kieloch A, Lizcano JM, Lain S, Arthur JS, Williams MR, Morrice N, Deak M, Alessi DR", "reference": { "type": "PubMed", "id": "11297520", "url": "https://pubmed.ncbi.nlm.nih.gov/11297520" }, "referenced_glycans": [], 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"uniprot_canonical_ac": "Q15831-1" }, { "start_pos": 428, "end_pos": 428, "kinase_uniprot_canonical_ac": "P17612-1", "kinase_gene_name": "PRKACA", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q15831", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q15831" }, { "database": "PubMed", "id": "11297520", "url": "https://pubmed.ncbi.nlm.nih.gov/11297520" }, { "database": "PubMed", "id": "11853558", "url": "https://pubmed.ncbi.nlm.nih.gov/11853558" } ], "site_lbl": "Ser428", "uniprot_canonical_ac": "Q15831-1" }, { "start_pos": 428, "end_pos": 428, "kinase_uniprot_canonical_ac": "P23443-1", "kinase_gene_name": "RPS6KB1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q15831", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q15831" }, { "database": "PubMed", "id": "11297520", "url": "https://pubmed.ncbi.nlm.nih.gov/11297520" }, { "database": "PubMed", "id": "11853558", "url": 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"database": "PubMed", "id": "25846811", "url": "https://pubmed.ncbi.nlm.nih.gov/25846811" } ], "site_lbl": "Ser428", "uniprot_canonical_ac": "Q15831-1" }, { "start_pos": 428, "end_pos": 428, "kinase_uniprot_canonical_ac": "Q9UK32-1", "kinase_gene_name": "RPS6KA6", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q15831", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q15831" }, { "database": "PubMed", "id": "11297520", "url": "https://pubmed.ncbi.nlm.nih.gov/11297520" } ], "site_lbl": "Ser428", "uniprot_canonical_ac": "Q15831-1" }, { "start_pos": 431, "end_pos": 431, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by autocatalysis, PKA, PKC/PRKCZ and RPS6KA1", "evidence": [ { "database": "UniProtKB", "id": "Q9WTK7", "url": "https://www.uniprot.org/uniprotkb/Q9WTK7" }, { "database": "PRO", "id": "Q9WTK7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q9WTK7" }, { "database": "iPTMnet", "id": "Q9WTK7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTK7" }, { "database": "PubMed", "id": "24295069", "url": "https://pubmed.ncbi.nlm.nih.gov/24295069" }, { "database": "PubMed", "id": "27849007", "url": "https://pubmed.ncbi.nlm.nih.gov/27849007" }, { "database": "PubMed", "id": "11297520", "url": "https://pubmed.ncbi.nlm.nih.gov/11297520" }, { "database": "PubMed", "id": "17482548", "url": "https://pubmed.ncbi.nlm.nih.gov/17482548" }, { "database": "PubMed", "id": "17482549", "url": "https://pubmed.ncbi.nlm.nih.gov/17482549" }, { "database": "PubMed", "id": "10642527", "url": "https://pubmed.ncbi.nlm.nih.gov/10642527" } ], "site_lbl": "Ser431", "uniprot_canonical_ac": "Q9WTK7-1" } ], "mutagenesis": [ { "start_pos": 431, "end_pos": 431, "sequence_org": "S", "sequence_mut": "A", "comment": "Does not prevent S-farnesylation. Defects in neuron polarization.", "evidence": [ { "database": "UniProtKB", "id": "Q9WTK7", "url": "https://www.uniprot.org/uniprotkb/Q9WTK7" }, { "database": "PubMed", "id": "17482548", "url": "https://pubmed.ncbi.nlm.nih.gov/17482548" }, { "database": "PubMed", "id": "17482549", "url": "https://pubmed.ncbi.nlm.nih.gov/17482549" }, { "database": "PubMed", "id": "10642527", "url": "https://pubmed.ncbi.nlm.nih.gov/10642527" }, { "database": "PubMed", "id": "11297520", "url": "https://pubmed.ncbi.nlm.nih.gov/11297520" } ], "uniprot_canonical_ac": "Q9WTK7-1" }, { "start_pos": 433, "end_pos": 433, "sequence_org": "C", "sequence_mut": "A", "comment": "Does not affect nuclear localization. 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"end_pos": 392, "kinase_uniprot_canonical_ac": "Q15831-1", "kinase_gene_name": "STK11", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P04637", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P04637" }, { "database": "PubMed", "id": "11430832", "url": "https://pubmed.ncbi.nlm.nih.gov/11430832" }, { "database": "PubMed", "id": "17108107", "url": "https://pubmed.ncbi.nlm.nih.gov/17108107" } ], "site_lbl": "Ser392", "uniprot_canonical_ac": "P04637-1" } ], "record_id": "pubmed.11430832", "abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutation screening at the RNA level of the STK11/LKB1 gene in Peutz-Jeghers syndrome reveals complex splicing abnormalities and a novel mRNA isoform (STK11 c.597(insertion mark)598insIVS4).", "journal": "Human mutation", "date": "2001", "authors": "Abed AA, Gunther K, Kraus C, Hohenberger W, Ballhausen WG", "reference": { "type": "PubMed", "id": "11668633", "url": "https://pubmed.ncbi.nlm.nih.gov/11668633" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q15831-1", "protein_name": "Serine/threonine-protein kinase STK11", "gene_name": "STK11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q15831", "url": "https://www.uniprot.org/uniprotkb/Q15831" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 189, "end_pos": 189, "kinase_uniprot_canonical_ac": "Q15831-1", "kinase_gene_name": "STK11", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q15831", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q15831" }, { "database": "PubMed", "id": "11668633", "url": "https://pubmed.ncbi.nlm.nih.gov/11668633" }, { "database": "PubMed", "id": "11430832", "url": "https://pubmed.ncbi.nlm.nih.gov/11430832" }, { "database": "UniProtKB", "id": "Q15831", "url": "https://www.uniprot.org/uniprotkb/Q15831" } ], "site_lbl": "Thr189", "uniprot_canonical_ac": "Q15831-1" } ], "record_id": "pubmed.11668633", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of four novel phosphorylation sites (Ser31, Ser325, Thr336 and Thr366) on LKB1/STK11, the protein kinase mutated in Peutz-Jeghers cancer syndrome.", "journal": "The Biochemical journal", "date": "2002", "authors": "Sapkota GP, Boudeau J, Deak M, Kieloch A, Morrice N, Alessi DR", "reference": { "type": "PubMed", "id": "11853558", "url": "https://pubmed.ncbi.nlm.nih.gov/11853558" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q15831-1", "protein_name": "Serine/threonine-protein kinase STK11", "gene_name": "STK11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9WTK7-1", "protein_name": "Serine/threonine-protein kinase STK11", "gene_name": "Stk11", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q15831", "url": "https://www.uniprot.org/uniprotkb/Q15831" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 189, "end_pos": 189, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by 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"database": "iPTMnet", "id": "Q15831", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q15831" }, { "database": "PubMed", "id": "11853558", "url": "https://pubmed.ncbi.nlm.nih.gov/11853558" }, { "database": "PubMed", "id": "12552571", "url": "https://pubmed.ncbi.nlm.nih.gov/12552571" }, { "database": "PubMed", "id": "22575644", "url": "https://pubmed.ncbi.nlm.nih.gov/22575644" }, { "database": "PubMed", "id": "28708087", "url": "https://pubmed.ncbi.nlm.nih.gov/28708087" } ], "site_lbl": "Thr336", "uniprot_canonical_ac": "Q15831-1" }, { "start_pos": 363, "end_pos": 363, "kinase_uniprot_canonical_ac": "Q13315-1", "kinase_gene_name": "ATM", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q15831", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q15831" }, { "database": "PubMed", "id": "11853558", "url": "https://pubmed.ncbi.nlm.nih.gov/11853558" }, { "database": "PubMed", "id": "12234250", "url": 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"database": "PubMed", "id": "11853558", "url": "https://pubmed.ncbi.nlm.nih.gov/11853558" } ], "site_lbl": "Ser428", "uniprot_canonical_ac": "Q15831-1" }, { "start_pos": 428, "end_pos": 428, "kinase_uniprot_canonical_ac": "P51812-1", "kinase_gene_name": "RPS6KA3", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q15831", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q15831" }, { "database": "PubMed", "id": "11297520", "url": "https://pubmed.ncbi.nlm.nih.gov/11297520" }, { "database": "PubMed", "id": "11853558", "url": "https://pubmed.ncbi.nlm.nih.gov/11853558" } ], "site_lbl": "Ser428", "uniprot_canonical_ac": "Q15831-1" }, { "start_pos": 31, "end_pos": 31, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WTK7", "url": "https://www.uniprot.org/uniprotkb/Q9WTK7" }, { "database": "PubMed", "id": "21183079", "url": 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"Q9WTK7-1", "kinase_gene_name": "Stk11", "residue": "Thr", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "Q9WTK7", "url": "https://www.uniprot.org/uniprotkb/Q9WTK7" }, { "database": "iPTMnet", "id": "Q9WTK7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTK7" }, { "database": "PubMed", "id": "11853558", "url": "https://pubmed.ncbi.nlm.nih.gov/11853558" } ], "site_lbl": "Thr336", "uniprot_canonical_ac": "Q9WTK7-1" }, { "start_pos": 366, "end_pos": 366, "kinase_uniprot_canonical_ac": "Q9WTK7-1", "kinase_gene_name": "Stk11", "residue": "Thr", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "Q9WTK7", "url": "https://www.uniprot.org/uniprotkb/Q9WTK7" }, { "database": "iPTMnet", "id": "Q9WTK7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTK7" }, { "database": "PubMed", "id": "11853558", "url": "https://pubmed.ncbi.nlm.nih.gov/11853558" } ], "site_lbl": "Thr366", "uniprot_canonical_ac": "Q9WTK7-1" }, { "start_pos": 366, "end_pos": 366, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by ATM and autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "Q9WTK7", "url": "https://www.uniprot.org/uniprotkb/Q9WTK7" }, { "database": "iPTMnet", "id": "Q9WTK7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WTK7" }, { "database": "PubMed", "id": "12234250", "url": "https://pubmed.ncbi.nlm.nih.gov/12234250" }, { "database": "PubMed", "id": "20864035", "url": "https://pubmed.ncbi.nlm.nih.gov/20864035" }, { "database": "PubMed", "id": "25329316", "url": "https://pubmed.ncbi.nlm.nih.gov/25329316" }, { "database": "PubMed", "id": "11853558", "url": "https://pubmed.ncbi.nlm.nih.gov/11853558" } ], "site_lbl": "Thr366", "uniprot_canonical_ac": "Q9WTK7-1" } ], "mutagenesis": [ { "start_pos": 194, "end_pos": 194, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of kinase activity and descreased phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "Q9WTK7", "url": "https://www.uniprot.org/uniprotkb/Q9WTK7" }, { "database": "PubMed", "id": "11853558", "url": "https://pubmed.ncbi.nlm.nih.gov/11853558" } ], "uniprot_canonical_ac": "Q9WTK7-1" }, { "start_pos": 31, "end_pos": 31, "sequence_org": "S", "sequence_mut": "A", "comment": "No change in kinase activity; when associated with A-325; A-336 and A-366.", "evidence": [ { "database": "UniProtKB", "id": "Q9WTK7", "url": "https://www.uniprot.org/uniprotkb/Q9WTK7" }, { "database": "PubMed", "id": "11853558", "url": "https://pubmed.ncbi.nlm.nih.gov/11853558" } ], "uniprot_canonical_ac": "Q9WTK7-1" }, { "start_pos": 325, "end_pos": 325, "sequence_org": "S", "sequence_mut": "A", "comment": "No change in kinase activity; when associated with A-31; A-336 and A-366.", "evidence": [ { "database": "UniProtKB", "id": "Q9WTK7", "url": "https://www.uniprot.org/uniprotkb/Q9WTK7" }, { "database": "PubMed", "id": "11853558", "url": 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