[ { "title": "The prohibitin genes in Arabidopsis thaliana: expression in seeds, hormonal regulation and possible role in cell cycle control during seed germination.", "journal": "J. Plant Physiol.", "date": "2007", "authors": "De Diego Juana G, David Rodr\u00edguez F, Rodr\u00edguez Lorenzo Jos\u00e9 Luis, Cervantes Emilio", "reference": { "type": "PubMed", "id": "16876910", "url": "https://pubmed.ncbi.nlm.nih.gov/16876910" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LK25-1", "protein_name": "Prohibitin-4, mitochondrial", "gene_name": "PHB4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LK25", "url": "https://www.uniprot.org/uniprotkb/Q9LK25" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16876910", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tat subunit stoichiometry in Arabidopsis thaliana challenges the proposed function of TatA as the translocation pore.", "journal": "Biochim. Biophys. Acta", "date": "2009", "authors": "Jakob Mario, Kaiser Susanne, Gutensohn Michael, Hanner Peter, Kl\u00f6sgen Ralf Bernd", "reference": { "type": "PubMed", "id": "18930082", "url": "https://pubmed.ncbi.nlm.nih.gov/18930082" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LKU2-1", "protein_name": "Sec-independent protein translocase protein TATA, chloroplastic", "gene_name": "TATA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XH75-1", "protein_name": "Sec-independent protein translocase protein TATB, chloroplastic", "gene_name": "TATB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJV5-1", "protein_name": "Sec-independent protein translocase protein TATC, chloroplastic", "gene_name": "TATC", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LKU2", "url": "https://www.uniprot.org/uniprotkb/Q9LKU2" } ], "common_name": 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cell", "date": "2000-06", "authors": "Diener A C, Li H, Zhou W, Whoriskey W J, Nes W D, Fink G R", "reference": { "type": "PubMed", "id": "10852933", "url": "https://pubmed.ncbi.nlm.nih.gov/10852933" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LM02-1", "protein_name": "Cycloartenol-C-24-methyltransferase", "gene_name": "SMT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LM02", "url": "https://www.uniprot.org/uniprotkb/Q9LM02" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10852933", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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involved in maintenance of the mitotic cell cycle during plant development.", "journal": "Plant physiology", "date": "2010-03", "authors": "Airoldi Chiara A, Rovere Federica Della, Falasca Giuseppina, Marino Giada, Kooiker Maarten, Altamura Maria Maddalena, Citterio Sandra, Kater Martin M", "reference": { "type": "PubMed", "id": "20032077", "url": "https://pubmed.ncbi.nlm.nih.gov/20032077" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LNC4-1", "protein_name": "Transcription factor GTE4", "gene_name": "GTE4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LNC4", "url": "https://www.uniprot.org/uniprotkb/Q9LNC4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20032077", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": 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J.", "date": "2017", "authors": "Rahikainen Moona, Trotta Andrea, Alegre Sara, Pascual Jes\u00fas, Vuorinen Katariina, Overmyer Kirk, Moffatt Barbara, Ravanel St\u00e9phane, Glawischnig Erich, Kangasj\u00e4rvi Saijaliisa", "reference": { "type": "PubMed", "id": "27598402", "url": "https://pubmed.ncbi.nlm.nih.gov/27598402" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LPU5-1", "protein_name": "Indole glucosinolate O-methyltransferase 1", "gene_name": "IGMT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RW96-1", "protein_name": "Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform", "gene_name": "ATB'; B'GAMMA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPU8-1", "protein_name": "Indole glucosinolate O-methyltransferase 4", "gene_name": "IGMT4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", 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control of root architecture and N nutrition are altered by a plant growth-promoting Phyllobacterium sp.", "journal": "Planta", "date": "2006", "authors": "Mantelin Sophie, Desbrosses Guilhem, Larcher Mari\u00e8le, Tranbarger Timothy J, Cleyet-Marel Jean-Claude, Touraine Bruno", "reference": { "type": "PubMed", "id": "16160849", "url": "https://pubmed.ncbi.nlm.nih.gov/16160849" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LPV5-1", "protein_name": "High affinity nitrate transporter 2.5", "gene_name": "NRT2.5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXH0-1", "protein_name": "High affinity nitrate transporter 2.6", "gene_name": "NRT2.6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LPV5", "url": "https://www.uniprot.org/uniprotkb/Q9LPV5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": 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"database": "UniProtKB", "id": "Q9LPV5", "url": "https://www.uniprot.org/uniprotkb/Q9LPV5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25474587", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"AFP is a novel negative regulator of ABA signaling that promotes ABI5 protein degradation.", "journal": "Genes & development", "date": "2003-02-01", "authors": "Lopez-Molina Luis, Mongrand S\u00e9bastien, Kinoshita Natsuko, Chua Nam-Hai", "reference": { "type": "PubMed", "id": "12569131", "url": "https://pubmed.ncbi.nlm.nih.gov/12569131" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LQ98-1", "protein_name": "Ninja-family protein AFP1", "gene_name": "AFP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJN0-1", "protein_name": "Protein ABSCISIC ACID-INSENSITIVE 5", "gene_name": "ABI5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LQ98", "url": "https://www.uniprot.org/uniprotkb/Q9LQ98" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RPA, a class II ARFGAP protein, activates ARF1 and U5 and plays a role in root hair development in Arabidopsis.", "journal": "Plant Physiol.", "date": "2006", "authors": "Song Xiu-Fen, Yang Chun-Ying, Liu Jie, Yang Wei-Cai", "reference": { "type": "PubMed", "id": "16731582", "url": "https://pubmed.ncbi.nlm.nih.gov/16731582" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LQC8-1", "protein_name": "ADP-ribosylation factor 2-A", "gene_name": "ARF2-A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82171-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein AGD10", "gene_name": "AGD10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DH91-1", "protein_name": "ADP-ribosylation factor 2-B", "gene_name": "ARF2-B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P36397-1", "protein_name": "ADP-ribosylation factor 1", "gene_name": "ARF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FL69-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein AGD5", "gene_name": "AGD5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": 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"AtNAP7 is a plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2004", "authors": "Xu Xiang Ming, M\u00f8ller Simon Geir", "reference": { "type": "PubMed", "id": "15184673", "url": "https://pubmed.ncbi.nlm.nih.gov/15184673" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LQK7-1", "protein_name": "Protein ABCI7, chloroplastic", "gene_name": "ABCI7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAF5-1", "protein_name": "ABC transporter I family member 6, chloroplastic", "gene_name": "ABCI6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LQK7", "url": "https://www.uniprot.org/uniprotkb/Q9LQK7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15184673", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A Pseudomonas syringae ADP-ribosyltransferase inhibits Arabidopsis mitogen-activated protein kinase kinases.", "journal": "Plant Cell", "date": "2010", "authors": "Wang Yujing, Li Jifeng, Hou Shuguo, Wang Xingwei, Li Yuan, Ren Dongtao, Chen She, Tang Xiaoyan, Zhou Jian-Min", "reference": { "type": "PubMed", "id": "20571112", "url": 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"tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LQM8", "url": "https://www.uniprot.org/uniprotkb/Q9LQM8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 313, "end_pos": 313, "sequence_org": "R", "sequence_mut": "A", "comment": "Loss of ADP-ribosylation.", "evidence": [ { "database": "UniProtKB", "id": "Q8RXG3", "url": "https://www.uniprot.org/uniprotkb/Q8RXG3" }, { "database": "PubMed", "id": "20571112", "url": "https://pubmed.ncbi.nlm.nih.gov/20571112" } ], "uniprot_canonical_ac": "Q8RXG3-1" }, { "start_pos": 313, "end_pos": 313, "sequence_org": "R", "sequence_mut": "K", "comment": "Loss of ADP-ribosylation.", "evidence": [ { "database": "UniProtKB", "id": "Q8RXG3", "url": "https://www.uniprot.org/uniprotkb/Q8RXG3" }, { "database": "PubMed", "id": "20571112", "url": 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"journal": "Plant Cell", "date": "2009", "authors": "Khanna Rajnish, Kronmiller Brent, Maszle Don R, Coupland George, Holm Magnus, Mizuno Takeshi, Wu Shu-Hsing", "reference": { "type": "PubMed", "id": "19920209", "url": "https://pubmed.ncbi.nlm.nih.gov/19920209" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LRM4-1", "protein_name": "B-box domain protein 31", "gene_name": "MIP1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96288-1", "protein_name": "B-box zinc finger protein 24", "gene_name": "BBX24; STO", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "C0SVM5-1", "protein_name": "B-box zinc finger protein 19", "gene_name": "BBX19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYM2-1", "protein_name": "B-box zinc finger protein 22", "gene_name": "BBX22; LZF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82617-1", "protein_name": "B-box zinc finger protein 23", "gene_name": "BBX23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0IGM7-1", "protein_name": "B-box zinc finger protein 20", "gene_name": "BBX20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJB7-1", "protein_name": "B-box zinc finger protein 32", "gene_name": "BBX32", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQZ7-1", "protein_name": "B-box zinc finger protein 21", "gene_name": "BBX21", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SID1-1", "protein_name": "B-box zinc finger protein 25", "gene_name": "BBX25", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1G3I2-1", "protein_name": "B-box domain protein 30", "gene_name": "MIP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJU5-1", "protein_name": "B-box zinc finger protein 18", "gene_name": "BBX18", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LRM4", 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retained in the endoplasmic reticulum when expressed in mammalian cells.", "evidence": [ { "database": "UniProtKB", "id": "Q9LS42", "url": "https://www.uniprot.org/uniprotkb/Q9LS42" }, { "database": "PubMed", "id": "16028120", "url": "https://pubmed.ncbi.nlm.nih.gov/16028120" } ], "uniprot_canonical_ac": "Q9LS42-1" } ], "record_id": "pubmed.16028120", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis vacuolar malate channel is a member of the ALMT family.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-12", "authors": "Kovermann Peter, Meyer Stefan, H\u00f6rtensteiner Stefan, Picco Cristiana, Scholz-Starke Joachim, Ravera Silvia, Lee Youngsook, Martinoia Enrico", "reference": { "type": "PubMed", "id": "18005230", "url": "https://pubmed.ncbi.nlm.nih.gov/18005230" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LS46-1", "protein_name": "Aluminum-activated malate transporter 9", "gene_name": "ALMT9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93Z29-1", "protein_name": "Aluminum-activated malate transporter 5", "gene_name": "ALMT5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LS46", "url": "https://www.uniprot.org/uniprotkb/Q9LS46" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18005230", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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Virol.", "date": "2002", "authors": "Wang Q May, Hockman Michelle A, Staschke Kirk, Johnson Robert B, Case Katharine A, Lu Jirong, Parsons Steve, Zhang Faming, Rathnachalam Radhakrishnan, Kirkegaard Karla, Colacino Joseph M", "reference": { "type": "PubMed", "id": "11907226", "url": "https://pubmed.ncbi.nlm.nih.gov/11907226" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26662-1", "protein_name": "Genome polyprotein", "gene_name": "", "tax_name": "HCV" } ], "species": [ { "name": "Hepatitis C virus (isolate Japanese)", "taxid": 11116, "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" } ], "common_name": "HCV", "glygen_name": "HCV-Japanese", "reference_species": "Hepatitis C virus (isolate Japanese) [11116]" } ], "record_id": "pubmed.11907226", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Med. Chem.", "date": "2004", "authors": "Ontoria Jesus M, Di Marco Stefania, Conte Immacolata, Di Francesco M Emilia, Gardelli Cristina, Koch Uwe, Matassa Victor G, Poma Marco, Steink\u00fchler Christian, Volpari Cinzia, Harper Steven", "reference": { "type": "PubMed", "id": "15588076", "url": "https://pubmed.ncbi.nlm.nih.gov/15588076" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26662-1", "protein_name": "Genome polyprotein", "gene_name": "", "tax_name": "HCV" } ], "species": [ { "name": "Hepatitis C virus (isolate Japanese)", "taxid": 11116, "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" } ], "common_name": "HCV", "glygen_name": "HCV-Japanese", "reference_species": "Hepatitis C virus (isolate Japanese) [11116]" } ], "record_id": "pubmed.15588076", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular determinants for subcellular localization of hepatitis C virus core protein.", "journal": "J. Virol.", "date": "2005", "authors": "Suzuki Ryosuke, Sakamoto Shinichiro, Tsutsumi Takeya, Rikimaru Akiko, Tanaka Keiko, Shimoike Takashi, Moriishi Kohji, Iwasaki Takuya, Mizumoto Kiyohisa, Matsuura Yoshiharu, Miyamura Tatsuo, Suzuki Tetsuro", "reference": { "type": "PubMed", "id": "15613354", "url": "https://pubmed.ncbi.nlm.nih.gov/15613354" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26662-1", "protein_name": "Genome polyprotein", "gene_name": "", "tax_name": "HCV" } ], "species": [ { "name": "Hepatitis C virus (isolate Japanese)", "taxid": 11116, "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" } ], "common_name": "HCV", "glygen_name": "HCV-Japanese", "reference_species": "Hepatitis C virus (isolate Japanese) [11116]" } ], "record_id": "pubmed.15613354", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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of the United States of America", "date": "1991", "authors": "Hijikata M, Kato N, Ootsuyama Y, Nakagawa M, Shimotohno K", "reference": { "type": "PubMed", "id": "1648221", "url": "https://pubmed.ncbi.nlm.nih.gov/1648221" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26662-1", "protein_name": "Genome polyprotein", "gene_name": "", "tax_name": "HCV" } ], "species": [ { "name": "Hepatitis C virus (isolate Japanese)", "taxid": 11116, "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" } ], "common_name": "HCV", "glygen_name": "HCV-Japanese", "reference_species": "Hepatitis C virus (isolate Japanese) [11116]" } ], "record_id": "pubmed.1648221", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The NS5A protein of the hepatitis C virus genotype 1a is cleaved by caspases to produce C-terminal-truncated forms of the protein that reside mainly in the cytosol.", "journal": "The Journal of biological chemistry", "date": "2006", "authors": "Kalamvoki M, Georgopoulou U, Mavromara P", "reference": { "type": "PubMed", "id": "16517592", "url": "https://pubmed.ncbi.nlm.nih.gov/16517592" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26662-1", "protein_name": "Genome 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Hepatitis C virus core protein blocks interferon signaling by interaction with the STAT1 SH2 domain.", "journal": "Journal of virology", "date": "2006-09", "authors": "Lin Wenyu, Kim Sun Suk, Yeung Elaine, Kamegaya Yoshitaka, Blackard Jason T, Kim Kyung Ah, Holtzman Michael J, Chung Raymond T", "reference": { "type": "PubMed", "id": "16940534", "url": "https://pubmed.ncbi.nlm.nih.gov/16940534" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26662-1", "protein_name": "Genome polyprotein", "gene_name": "", "tax_name": "HCV" } ], "species": [ { "name": "Hepatitis C virus (isolate Japanese)", "taxid": 11116, "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" } ], "common_name": "HCV", "glygen_name": "HCV-Japanese", "reference_species": "Hepatitis C virus (isolate Japanese) [11116]" } ], "record_id": "pubmed.16940534", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": 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Gastroenterol.", "date": "2007", "authors": "Veillon Pascal, Payan Christopher, Le Guillou-Guillemette H\u00e9l\u00e8ne, Gaudy Catherine, Lunel Fran\u00e7oise", "reference": { "type": "PubMed", "id": "17451199", "url": "https://pubmed.ncbi.nlm.nih.gov/17451199" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26662-1", "protein_name": "Genome polyprotein", "gene_name": "", "tax_name": "HCV" }, { "uniprot_canonical_ac": "P19525-1", "protein_name": "Interferon-induced, double-stranded RNA-activated protein kinase", "gene_name": "EIF2AK2", "tax_name": "Human" } ], "species": [ { "name": "Hepatitis C virus (isolate Japanese)", "taxid": 11116, "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" } ], "common_name": "HCV", "glygen_name": "HCV-Japanese", "reference_species": "Hepatitis C virus (isolate Japanese) [11116]" } ], "record_id": "pubmed.17451199", "abstract": "", "glycosylation": [], 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Chem.", "date": "2013", "authors": "O'Meara Jeff A, Lemke Christopher T, Godbout C\u00e9drickx, Kukolj George, Lagac\u00e9 Lisette, Moreau Beno\u00eet, Thibeault Diane, White Peter W, Llin\u00e0s-Brunet Montse", "reference": { "type": "PubMed", "id": "23271737", "url": "https://pubmed.ncbi.nlm.nih.gov/23271737" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26662-1", "protein_name": "Genome polyprotein", "gene_name": "", "tax_name": "HCV" } ], "species": [ { "name": "Hepatitis C virus (isolate Japanese)", "taxid": 11116, "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" } ], "common_name": "HCV", "glygen_name": "HCV-Japanese", "reference_species": "Hepatitis C virus (isolate Japanese) [11116]" } ], "record_id": "pubmed.23271737", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Med. 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Parton RG, Tai AW", "reference": { "type": "PubMed", "id": "23935497", "url": "https://pubmed.ncbi.nlm.nih.gov/23935497" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26662-1", "protein_name": "Genome polyprotein", "gene_name": "", "tax_name": "HCV" }, { "uniprot_canonical_ac": "Q9NP72-1", "protein_name": "Ras-related protein Rab-18", "gene_name": "RAB18", "tax_name": "Human" } ], "species": [ { "name": "Hepatitis C virus (isolate Japanese)", "taxid": 11116, "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" } ], "common_name": "HCV", "glygen_name": "HCV-Japanese", "reference_species": "Hepatitis C virus (isolate Japanese) [11116]" } ], "record_id": "pubmed.23935497", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": 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"field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "P26662-1", "protein_name": "Genome polyprotein", "gene_name": "", "tax_name": "HCV" } ], "species": [ { "name": "Hepatitis C virus (isolate Japanese)", "taxid": 11116, "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" } ], "common_name": "HCV", "glygen_name": "HCV-Japanese", "reference_species": "Hepatitis C virus (isolate Japanese) [11116]" } ], "record_id": "pubmed.7999043", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nonstructural protein 3 of the hepatitis C virus encodes a serine-type proteinase required for cleavage at the NS3/4 and NS4/5 junctions.", "journal": "Journal of virology", "date": "1993", "authors": "Bartenschlager R, Ahlborn-Laake L, Mous J, Jacobsen H", "reference": { "type": "PubMed", "id": "8389908", "url": "https://pubmed.ncbi.nlm.nih.gov/8389908" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26662-1", "protein_name": "Genome polyprotein", "gene_name": "", "tax_name": "HCV" } ], "species": [ { "name": "Hepatitis C virus (isolate Japanese)", "taxid": 11116, "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" } ], "common_name": "HCV", "glygen_name": "HCV-Japanese", "reference_species": "Hepatitis C virus (isolate Japanese) [11116]" } ], "mutagenesis": [ { "start_pos": 1083, "end_pos": 1083, "sequence_org": "H", "sequence_mut": "A", "comment": "Complete loss of serine protease NS3 activity. No effect on zinc-binding by serine protease NS3.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" }, { "database": "PubMed", "id": "9060645", "url": "https://pubmed.ncbi.nlm.nih.gov/9060645" }, { "database": "PubMed", "id": "8389908", "url": "https://pubmed.ncbi.nlm.nih.gov/8389908" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1107, "end_pos": 1107, "sequence_org": "D", "sequence_mut": "A", "comment": "Complete loss of serine protease NS3 activity.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" }, { "database": "PubMed", "id": "8389908", "url": "https://pubmed.ncbi.nlm.nih.gov/8389908" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1165, "end_pos": 1165, "sequence_org": "S", "sequence_mut": "A", "comment": "Complete loss of serine protease NS3 activity. No effect on zinc-binding by serine protease NS3.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" }, { "database": "PubMed", "id": "9060645", "url": "https://pubmed.ncbi.nlm.nih.gov/9060645" }, { "database": "PubMed", "id": "8389908", "url": "https://pubmed.ncbi.nlm.nih.gov/8389908" } ], "uniprot_canonical_ac": "P26662-1" } ], "record_id": "pubmed.8389908", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two distinct proteinase activities required for the processing of a putative nonstructural precursor protein of hepatitis C virus.", "journal": "Journal of virology", "date": "1993", "authors": "Hijikata M, Mizushima H, Akagi T, Mori S, Kakiuchi N, Kato N, Tanaka T, Kimura K, Shimotohno K", "reference": { "type": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26662-1", "protein_name": "Genome polyprotein", "gene_name": "", "tax_name": "HCV" } ], "species": [ { "name": "Hepatitis C virus (isolate Japanese)", "taxid": 11116, "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" } ], "common_name": "HCV", "glygen_name": "HCV-Japanese", "reference_species": "Hepatitis C virus (isolate Japanese) [11116]" } ], "mutagenesis": [ { "start_pos": 1009, "end_pos": 1009, "sequence_org": "E", "sequence_mut": "Q", "comment": "No effect on polyprotein processing.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1058, "end_pos": 1058, "sequence_org": "E", "sequence_mut": "Q", "comment": "No effect on polyprotein processing.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1083, "end_pos": 1083, "sequence_org": "H", "sequence_mut": "A", "comment": "Complete loss of serine protease NS3 activity. No effect on zinc-binding by serine protease NS3.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" }, { "database": "PubMed", "id": "9060645", "url": "https://pubmed.ncbi.nlm.nih.gov/9060645" }, { "database": "PubMed", "id": "8389908", "url": "https://pubmed.ncbi.nlm.nih.gov/8389908" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1107, "end_pos": 1107, "sequence_org": "D", "sequence_mut": "A", "comment": "Complete loss of serine protease NS3 activity.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" }, { "database": "PubMed", "id": "8389908", "url": "https://pubmed.ncbi.nlm.nih.gov/8389908" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1123, "end_pos": 1123, "sequence_org": "C", "sequence_mut": "A", "comment": "Reduced protease NS2 and serine protease NS3 activities.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1125, "end_pos": 1125, "sequence_org": "C", "sequence_mut": "A", "comment": "Reduced protease NS2 and serine protease NS3 activities.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1136, "end_pos": 1136, "sequence_org": "H", "sequence_mut": "A", "comment": "No effect on polyprotein processing. No effect on zinc-binding by serine protease/helicase NS3.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" }, { "database": "PubMed", "id": "9060645", "url": "https://pubmed.ncbi.nlm.nih.gov/9060645" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1165, "end_pos": 1165, "sequence_org": "S", "sequence_mut": "A", "comment": "Complete loss of serine protease NS3 activity. No effect on zinc-binding by serine protease NS3.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" }, { "database": "PubMed", "id": "9060645", "url": "https://pubmed.ncbi.nlm.nih.gov/9060645" }, { "database": "PubMed", "id": "8389908", "url": "https://pubmed.ncbi.nlm.nih.gov/8389908" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1171, "end_pos": 1171, "sequence_org": "C", "sequence_mut": "A", "comment": "Reduced protease NS2 and serine protease NS3 activities.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1175, "end_pos": 1175, "sequence_org": "H", "sequence_mut": "A", "comment": "No effect on polyprotein processing. Reduces zinc-binding by serine protease NS3.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" }, { "database": "PubMed", "id": "9060645", "url": "https://pubmed.ncbi.nlm.nih.gov/9060645" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1185, "end_pos": 1185, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on polyprotein processing. No effect on zinc-binding by serine protease NS3.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" }, { "database": "PubMed", "id": "9060645", "url": "https://pubmed.ncbi.nlm.nih.gov/9060645" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1199, "end_pos": 1199, "sequence_org": "E", "sequence_mut": "Q", "comment": "No effect on polyprotein processing.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1202, "end_pos": 1202, "sequence_org": "E", "sequence_mut": "Q", "comment": "No effect on polyprotein processing.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1227, "end_pos": 1227, "sequence_org": "H", "sequence_mut": "A", "comment": "No effect on polyprotein processing. No effect on zinc-binding by serine protease NS3.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" }, { "database": "PubMed", "id": "9060645", "url": "https://pubmed.ncbi.nlm.nih.gov/9060645" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 1229, "end_pos": 1229, "sequence_org": "H", "sequence_mut": "A", "comment": "No effect on polyprotein processing. No effect on zinc-binding by serine protease NS3.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" }, { "database": "PubMed", "id": "9060645", "url": "https://pubmed.ncbi.nlm.nih.gov/9060645" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 922, "end_pos": 922, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on polyprotein processing.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { "database": "PubMed", "id": "8392606", "url": "https://pubmed.ncbi.nlm.nih.gov/8392606" } ], "uniprot_canonical_ac": "P26662-1" }, { "start_pos": 932, "end_pos": 932, "sequence_org": "H", "sequence_mut": "A", "comment": "No effect on polyprotein processing.", "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" }, { 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Virol.", "date": "1997", "authors": "Asabe S I, Tanji Y, Satoh S, Kaneko T, Kimura K, Shimotohno K", "reference": { "type": "PubMed", "id": "8985418", "url": "https://pubmed.ncbi.nlm.nih.gov/8985418" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26662-1", "protein_name": "Genome polyprotein", "gene_name": "", "tax_name": "HCV" } ], "species": [ { "name": "Hepatitis C virus (isolate Japanese)", "taxid": 11116, "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" } ], "common_name": "HCV", "glygen_name": "HCV-Japanese", "reference_species": "Hepatitis C virus (isolate Japanese) [11116]" } ], "record_id": "pubmed.8985418", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Virol.", "date": "1998", "authors": "Pawlotsky J M, Germanidis G, Neumann A U, Pellerin M, Frainais P O, Dhumeaux D", "reference": { "type": "PubMed", "id": "9525599", "url": "https://pubmed.ncbi.nlm.nih.gov/9525599" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P26662-1", "protein_name": "Genome polyprotein", "gene_name": "", "tax_name": "HCV" } ], "species": [ { "name": "Hepatitis C virus (isolate Japanese)", "taxid": 11116, "evidence": [ { "database": "UniProtKB", "id": "P26662", "url": "https://www.uniprot.org/uniprotkb/P26662" } ], "common_name": "HCV", "glygen_name": "HCV-Japanese", "reference_species": "Hepatitis C virus (isolate Japanese) [11116]" } ], "record_id": "pubmed.9525599", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Cell Res.", "date": "1999", "authors": "Ghaedi K, Itagaki A, Toyama R, Tamura S, Matsumura T, Kawai A, Shimozawa N, Suzuki Y, Kondo N, Fujiki Y", "reference": { "type": "PubMed", "id": "10222139", "url": "https://pubmed.ncbi.nlm.nih.gov/10222139" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "G3HQ82-1", "protein_name": "Peroxisome assembly protein 26", "gene_name": "Pex26", "tax_name": "Chinese hamster" } ], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "G3HQ82", "url": "https://www.uniprot.org/uniprotkb/G3HQ82" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "record_id": "pubmed.10222139", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Macromolecular assemblage of aminoacyl-tRNA synthetases: identification of protein-protein interactions and characterization of a core protein.", "journal": "J. 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[] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] 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"A1Z8X3", "url": "https://www.uniprot.org/uniprotkb/A1Z8X3" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.19948479", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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requirement of Drosophila Rcd4 for centriole duplication and ciliogenesis.", "journal": "The Journal of cell biology", "date": "2020-09-07", "authors": "Panda Pallavi, Kovacs Levente, Dzhindzhev Nikola, Fatalska Agnieszka, Persico Veronica, Geymonat Marco, Riparbelli Maria Giovanna, Callaini Giuliano, Glover David M", "reference": { "type": "PubMed", "id": "32543652", "url": "https://pubmed.ncbi.nlm.nih.gov/32543652" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A1Z8X3-1", "protein_name": "Protein rotatin homolog", "gene_name": "ana3", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VLM6-1", "protein_name": "Protein PPP1R35 homolog", "gene_name": "Rcd4", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "A1Z8X3", "url": "https://www.uniprot.org/uniprotkb/A1Z8X3" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila 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"Patalano Solenn, Mihailovich Marija, Belacortu Yaiza, Paricio Nuria, Gebauer F\u00e1tima", "reference": { "type": "PubMed", "id": "19168682", "url": "https://pubmed.ncbi.nlm.nih.gov/19168682" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B7Z0E2-1", "protein_name": "RNA-binding protein Unr", "gene_name": "Unr", "tax_name": "Fruit fly" } ], "species": [ { "name": "Drosophila melanogaster", "taxid": 7227, "evidence": [ { "database": "UniProtKB", "id": "B7Z0E2", "url": "https://www.uniprot.org/uniprotkb/B7Z0E2" } ], "common_name": "Fruit fly", "glygen_name": "Fruit fly", "reference_species": "Drosophila melanogaster [7227]" } ], "record_id": "pubmed.19168682", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] 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