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"uniprot_canonical_ac": "Q8RY16-1", "protein_name": "Peroxisomal ATPase PEX6", "gene_name": "PEX6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RY16", "url": "https://www.uniprot.org/uniprotkb/Q8RY16" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 766, "end_pos": 766, "sequence_org": "R", "sequence_mut": "Q", "comment": "In pex6-1; Loss of sensitivity to exogenous indole-3-butyric acid (IBA)and decreased number of peroxisomes. 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Jasmonate biosynthesis in Arabidopsis thaliana requires peroxisomal beta-oxidation enzymes--additional proof by properties of pex6 and aim1.", "journal": "Phytochemistry", "date": "2007-06", "authors": "Delker Carolin, Zolman Bethany K, Miersch Otto, Wasternack Claus", "reference": { "type": "PubMed", "id": "17544464", "url": "https://pubmed.ncbi.nlm.nih.gov/17544464" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RY16-1", "protein_name": "Peroxisomal ATPase PEX6", "gene_name": "PEX6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZPI6-1", "protein_name": "Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1", "gene_name": "AIM1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY48-1", "protein_name": "Jasmonate-induced oxygenase 3", "gene_name": "JOX3; JRG21", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 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[] } ] }, { "title": "Reducing PEX13 expression ameliorates physiological defects of late-acting peroxin mutants.", "journal": "Traffic (Copenhagen, Denmark)", "date": "2011-01", "authors": "Ratzel Sarah E, Lingard Matthew J, Woodward Andrew W, Bartel Bonnie", "reference": { "type": "PubMed", "id": "20969679", "url": "https://pubmed.ncbi.nlm.nih.gov/20969679" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RY16-1", "protein_name": "Peroxisomal ATPase PEX6", "gene_name": "PEX6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RY16", "url": "https://www.uniprot.org/uniprotkb/Q8RY16" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20969679", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential expression and function of Arabidopsis thaliana NHX Na(+)/H(+) antiporters in the salt stress response.", "journal": "Plant J.", "date": "2002", "authors": "Yokoi Shuji, Quintero Francisco J, Cubero Beatriz, Ruiz Maria T, Bressan Ray A, Hasegawa Paul M, Pardo Jose M", "reference": { "type": "PubMed", "id": "12047628", "url": "https://pubmed.ncbi.nlm.nih.gov/12047628" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S397-1", "protein_name": "Sodium/hydrogen exchanger 4", "gene_name": "NHX4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWU6-1", "protein_name": "Sodium/hydrogen exchanger 6", "gene_name": "NHX6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8S396-1", "protein_name": "Sodium/hydrogen exchanger 5", "gene_name": "NHX5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84WG1-1", "protein_name": "Sodium/hydrogen exchanger 3", "gene_name": "NHX3; NHX4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56XP4-1", "protein_name": "Sodium/hydrogen exchanger 2", "gene_name": "NHX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q68KI4-1", "protein_name": "Sodium/hydrogen exchanger 1", "gene_name": "NHX1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S397", "url": "https://www.uniprot.org/uniprotkb/Q8S397" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12047628", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis cell plate-associated dynamin-like protein, ADL1Ap, is required for multiple stages of plant growth and development.", "journal": "Plant Physiol.", "date": "2001", "authors": "Kang B H, Busse J S, Dickey C, Rancour D M, Bednarek S Y", "reference": { "type": "PubMed", "id": "11351070", "url": "https://pubmed.ncbi.nlm.nih.gov/11351070" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S3C9-1", "protein_name": "Phragmoplastin DRP1D", "gene_name": "DRP1D", "tax_name": "Mouse-ear cress" 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"evidence": [ { "database": "UniProtKB", "id": "Q8S3F1", "url": "https://www.uniprot.org/uniprotkb/Q8S3F1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18248598", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "NAI2 is an endoplasmic reticulum body component that enables ER body formation in Arabidopsis thaliana.", "journal": "The Plant cell", "date": "2008-09", "authors": "Yamada Kenji, Nagano Atsushi J, Nishina Momoko, Hara-Nishimura Ikuko, Nishimura Mikio", "reference": { "type": "PubMed", "id": "18780803", "url": "https://pubmed.ncbi.nlm.nih.gov/18780803" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S3F1-1", "protein_name": "Transcription factor NAI1", "gene_name": "NAI1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J1D9-1", "protein_name": "NAI2-like protein", "gene_name": "MVC8.10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSB4-1", "protein_name": "TSA1-like protein", "gene_name": "NAI2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4ICX9-1", "protein_name": "TSK-associating protein 1", "gene_name": "TSA1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": 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Klaus, Berendzen Kenneth W", "reference": { "type": "PubMed", "id": "21347358", "url": "https://pubmed.ncbi.nlm.nih.gov/21347358" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S8C6-1", "protein_name": "Protein BASIC PENTACYSTEINE4", "gene_name": "BPC4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L999-1", "protein_name": "Protein BASIC PENTACYSTEINE6", "gene_name": "BPC6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S8C6", "url": "https://www.uniprot.org/uniprotkb/Q8S8C6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21347358", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis.", "journal": "Plant J.", "date": "2011", "authors": "Monfared Mona M, Simon Marissa K, Meister Robert J, Roig-Villanova Irma, Kooiker Maarten, Colombo Lucia, Fletcher Jennifer C, Gasser Charles S", "reference": { "type": "PubMed", "id": "21435046", "url": "https://pubmed.ncbi.nlm.nih.gov/21435046" }, "referenced_glycans": 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pathway of NAD biosynthesis in Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-03", "authors": "Wang Guodong, Pichersky Eran", "reference": { "type": "PubMed", "id": "17335512", "url": "https://pubmed.ncbi.nlm.nih.gov/17335512" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S8F9-1", "protein_name": "Nicotinamidase 1", "gene_name": "NIC1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S8F9", "url": "https://www.uniprot.org/uniprotkb/Q8S8F9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17335512", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of Novel Peptidyl Serine \u03b1-Galactosyltransferase Gene Family in Plants.", "journal": "The Journal of biological chemistry", "date": "2014-07-25", "authors": "Saito Fumie, Suyama Akiko, Oka Takuji, Yoko-O Takehiko, Matsuoka Ken, Jigami Yoshifumi, Shimma Yoh-Ichi", "reference": { "type": "PubMed", "id": "24914209", "url": "https://pubmed.ncbi.nlm.nih.gov/24914209" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VYF9-1", "protein_name": "Peptidyl serine alpha-galactosyltransferase", "gene_name": "SERGT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYF9", "url": "https://www.uniprot.org/uniprotkb/Q8VYF9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24914209", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization, sub-cellular localization and expression profiling of the isoprenylcysteine methylesterase gene family in Arabidopsis thaliana.", "journal": "BMC Plant Biol.", "date": "2010", "authors": "Lan Ping, Li Wenfeng, Wang Huizhong, Ma Wujun", "reference": { "type": "PubMed", "id": "20868530", "url": "https://pubmed.ncbi.nlm.nih.gov/20868530" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VYP9-1", "protein_name": "Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1", "gene_name": "ICMEL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1PET6-1", "protein_name": "Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2", "gene_name": "ICME-LIKE2; ICMEL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AS5-1", "protein_name": "Isoprenylcysteine alpha-carbonyl methylesterase ICME", "gene_name": "ICME", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYP9", "url": "https://www.uniprot.org/uniprotkb/Q8VYP9" } ], "common_name": "Mouse-ear cress", "glygen_name": 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snoRNP.", "journal": "Plant physiology", "date": "2009-07", "authors": "Barbezier Nicolas, Canino Giusy, Rodor Julie, Jobet Edouard, Saez-Vasquez Julio, Marchfelder Anita, Echeverr\u00eda Manuel", "reference": { "type": "PubMed", "id": "19420328", "url": "https://pubmed.ncbi.nlm.nih.gov/19420328" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VYS2-1", "protein_name": "tRNase Z TRZ3, mitochondrial", "gene_name": "TRZ3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LGU7-1", "protein_name": "tRNase Z TRZ1", "gene_name": "TRZ1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYS2", "url": "https://www.uniprot.org/uniprotkb/Q8VYS2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19420328", "abstract": "", "glycosylation": [], "mutagenesis": [], 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"url": "https://www.uniprot.org/uniprotkb/Q8VZ91" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "phosphorylation": [ { "start_pos": 266, "end_pos": 266, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "PRO", "id": "Q8VZ91", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q8VZ91" }, { "database": "iPTMnet", "id": "Q8VZ91", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZ91" }, { "database": "PubMed", "id": "23300166", "url": "https://pubmed.ncbi.nlm.nih.gov/23300166" } ], "site_lbl": "Ser266", "uniprot_canonical_ac": "Q8VZ91-1" }, { "start_pos": 269, "end_pos": 269, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "PRO", "id": "Q8VZ91", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q8VZ91" }, { "database": "iPTMnet", "id": "Q8VZ91", 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0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RAP, the sole octotricopeptide repeat protein in Arabidopsis, is required for chloroplast 16S rRNA maturation.", "journal": "The Plant cell", "date": "2014-02", "authors": "Kleinknecht Laura, Wang Fei, St\u00fcbe Roland, Philippar Katrin, Nickelsen J\u00f6rg, Bohne Alexandra-Viola", "reference": { "type": "PubMed", "id": "24585838", "url": "https://pubmed.ncbi.nlm.nih.gov/24585838" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VZE7-1", "protein_name": "RAP domain-containing protein, chloroplastic", "gene_name": "RAP", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZE7", "url": "https://www.uniprot.org/uniprotkb/Q8VZE7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expanded type III effector recognition by the ZAR1 NLR protein using ZED1-related kinases.", "journal": "Nature plants", "date": "2017-03-13", "authors": "Seto Derek, Koulena Noushin, Lo Timothy, Menna Alexandra, Guttman David S, Desveaux Darrell", "reference": { "type": "PubMed", "id": "28288096", "url": "https://pubmed.ncbi.nlm.nih.gov/28288096" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VZF4-1", "protein_name": "Serine/threonine-protein kinase ZRK3", "gene_name": "ZRK3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38834-1", "protein_name": "Disease resistance RPP13-like protein 4", "gene_name": "RPP13L4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZF4", "url": "https://www.uniprot.org/uniprotkb/Q8VZF4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.28288096", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Coordinated regulation and complex formation of yellow variegated1 and yellow variegated2, chloroplastic FtsH metalloproteases involved in the repair cycle of photosystem II in Arabidopsis thylakoid membranes.", "journal": "Plant Cell", "date": "2003", "authors": "Sakamoto Wataru, Zaltsman Adi, Adam Zach, Takahashi Yuichiro", "reference": { "type": "PubMed", "id": "14630971", "url": 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"uniprot_canonical_ac": "Q9SAJ3-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 12, chloroplastic", "gene_name": "FTSH12", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZI8", "url": "https://www.uniprot.org/uniprotkb/Q8VZI8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14630971", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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Analysis of chloroplast and mitochondrial proteases.", "journal": "Plant Physiol.", "date": "2004", "authors": "Sinvany-Villalobo Galit, Davydov Olga, Ben-Ari Giora, Zaltsman Adi, Raskind Alexander, Adam Zach", "reference": { "type": "PubMed", "id": "15266057", "url": "https://pubmed.ncbi.nlm.nih.gov/15266057" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VZI8-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 10, mitochondrial", "gene_name": "FTSH10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIM2-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 9, chloroplastic", "gene_name": "FTSH9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W585-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 8, chloroplastic", "gene_name": "FTSH8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80983-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 4, mitochondrial", "gene_name": "FTSH4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FGM0-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial", "gene_name": "FTSH11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FH02-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 5, chloroplastic", "gene_name": "FTSH5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84WU8-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 3, mitochondrial", "gene_name": "FTSH3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39102-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 1, chloroplastic", "gene_name": "FTSH1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80860-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 2, chloroplastic", "gene_name": "FTSH2; VAR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SAJ3-1", "protein_name": "ATP-dependent zinc metalloprotease FTSH 12, chloroplastic", "gene_name": "FTSH12", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZI8", "url": "https://www.uniprot.org/uniprotkb/Q8VZI8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15266057", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 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"uniprot_canonical_ac": "Q9ZWG1-1", "protein_name": "Mitochondrial uncoupling protein 2", "gene_name": "PUMP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVQ5-1", "protein_name": "Hyperosmolality-gated Ca2+ permeable channel 1.8", "gene_name": "OSCA1.8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q52T38-1", "protein_name": "Protein S-acyltransferase 24", "gene_name": "PAT24", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SPM5-1", "protein_name": "Apyrase 2", "gene_name": "APY2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SQG2-1", "protein_name": "Apyrase 1", "gene_name": "APY1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZJ7", "url": "https://www.uniprot.org/uniprotkb/Q8VZJ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two alpha-L-arabinofuranosidase genes in Arabidopsis thaliana are differentially expressed during vegetative growth and flower development.", "journal": "J. Exp. Bot.", "date": "2003", "authors": "Fulton Lynette M, Cobbett Christopher S", "reference": { "type": "PubMed", "id": "14512381", "url": "https://pubmed.ncbi.nlm.nih.gov/14512381" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VZR2-1", "protein_name": "Alpha-L-arabinofuranosidase 2", "gene_name": "ASD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SG80-1", "protein_name": "Alpha-L-arabinofuranosidase 1", "gene_name": "ASD1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZR2", "url": "https://www.uniprot.org/uniprotkb/Q8VZR2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14512381", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Alain, Goffner Deborah", "reference": { "type": "PubMed", "id": "18344421", "url": "https://pubmed.ncbi.nlm.nih.gov/18344421" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VZR2-1", "protein_name": "Alpha-L-arabinofuranosidase 2", "gene_name": "ASD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SG80-1", "protein_name": "Alpha-L-arabinofuranosidase 1", "gene_name": "ASD1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZR2", "url": "https://www.uniprot.org/uniprotkb/Q8VZR2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18344421", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GIP1 protein is a novel cofactor that regulates DNA-binding affinity of redox-regulated members of bZIP transcription factors involved in the early stages of Arabidopsis development.", "journal": "Protoplasma", "date": "2015-05", "authors": "Shaikhali Jehad", "reference": { "type": "PubMed", "id": "25387999", "url": "https://pubmed.ncbi.nlm.nih.gov/25387999" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VZS6-1", "protein_name": "GBF-interacting protein 1", "gene_name": "GIP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P42774-1", "protein_name": "G-box-binding factor 1", "gene_name": "GBF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84LG2-1", "protein_name": "bZIP transcription factor 68", "gene_name": "BZIP68", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q501B2-1", "protein_name": "bZIP transcription factor 16", "gene_name": "BZIP16", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS6", "url": "https://www.uniprot.org/uniprotkb/Q8VZS6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25387999", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"CBL-interacting serine/threonine-protein kinase 25", "gene_name": "CIPK25", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W1D5", "url": "https://www.uniprot.org/uniprotkb/Q8W1D5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "phosphorylation": [ { "start_pos": 201, "end_pos": 201, "kinase_uniprot_canonical_ac": "Q8W1D5-1", "kinase_gene_name": "CIPK25", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8W1D5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W1D5" }, { "database": "PubMed", "id": "30239807", "url": "https://pubmed.ncbi.nlm.nih.gov/30239807" } ], "site_lbl": "Thr201", "uniprot_canonical_ac": "Q8W1D5-1" } ], "record_id": "pubmed.30239807", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { 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"PubMed", "id": "11701877", "url": "https://pubmed.ncbi.nlm.nih.gov/11701877" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W1P0-1", "protein_name": "COP9 signalosome complex subunit 6b", "gene_name": "CSN6B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W206-1", "protein_name": "COP9 signalosome complex subunit 6a", "gene_name": "CSN6A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W1P0", "url": "https://www.uniprot.org/uniprotkb/Q8W1P0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11701877", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome.", "journal": "EMBO J.", "date": "2001", "authors": "Fu H, Reis N, Lee Y, Glickman M H, Vierstra R D", "reference": { "type": "PubMed", "id": "11742986", "url": "https://pubmed.ncbi.nlm.nih.gov/11742986" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W1P0-1", "protein_name": "COP9 signalosome complex subunit 6b", "gene_name": "CSN6B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W206-1", "protein_name": "COP9 signalosome complex subunit 6a", "gene_name": "CSN6A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94JU3-1", "protein_name": "COP9 signalosome complex subunit 7", "gene_name": "CSN7; FUS5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W575-1", "protein_name": "COP9 signalosome complex subunit 3", "gene_name": "COP13; CSN3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P45432-1", "protein_name": "COP9 signalosome complex subunit 1", "gene_name": "CSN1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L5U0-1", "protein_name": "COP9 signalosome complex subunit 4", "gene_name": "CSN4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LAZ7-1", "protein_name": "COP9 signalosome complex subunit 5a", "gene_name": "CSN5A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W207-1", "protein_name": "COP9 signalosome 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large meristems, increased carpel number, and slightly shorter roots. Suppresses the short root phenotype of transgenic plants constitutively overexpressing the CLE19 gene. Enhanced resistance to CLV3 peptide that inhibits root growth.", "evidence": [ { "database": "UniProtKB", "id": "Q9LYU7", "url": "https://www.uniprot.org/uniprotkb/Q9LYU7" }, { "database": "PubMed", "id": "18854335", "url": "https://pubmed.ncbi.nlm.nih.gov/18854335" }, { "database": "PubMed", "id": "12932329", "url": "https://pubmed.ncbi.nlm.nih.gov/12932329" } ], "uniprot_canonical_ac": "Q9LYU7-1" } ], "record_id": "pubmed.12932329", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a plastid acyl-acyl carrier protein synthetase in Arabidopsis and its role in the activation and elongation of exogenous fatty acids.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-11", "authors": "Koo Abraham J K, Fulda Martin, Browse John, Ohlrogge John B", "reference": { "type": "PubMed", "id": "16262711", "url": "https://pubmed.ncbi.nlm.nih.gov/16262711" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W471-1", "protein_name": "Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic", "gene_name": "AAE15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK39-1", "protein_name": "Probable acyl-activating enzyme 16, chloroplastic", "gene_name": "AAE16", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W471", "url": "https://www.uniprot.org/uniprotkb/Q8W471" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16262711", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Absence of branches from xylan in Arabidopsis gux mutants reveals potential for simplification of lignocellulosic biomass.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2010", "authors": "Mortimer Jennifer C, Miles Godfrey P, Brown David M, Zhang Zhinong, Segura Marcelo P, Weimar Thilo, Yu Xiaolan, Seffen Keith A, Stephens Elaine, Turner Simon R, Dupree Paul", "reference": { "type": "PubMed", "id": "20852069", "url": "https://pubmed.ncbi.nlm.nih.gov/20852069" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8W4A7-1", "protein_name": "Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3", "gene_name": "GUX3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GWW4-1", "protein_name": "UDP-glucuronate:xylan alpha-glucuronosyltransferase 2", "gene_name": "GUX2; PGSIP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSB1-1", "protein_name": "UDP-glucuronate:xylan alpha-glucuronosyltransferase 1", "gene_name": "GUX1; PGSIP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": 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Tingting, Yang Libo, Wu Xi, Ni Jiaojiao, Jiang Haikun, Zhang Qi'an, Fang Ling, Sheng Yibao, Ren Yongbing, Cao Shuqing", "reference": { "type": "PubMed", "id": "27335453", "url": "https://pubmed.ncbi.nlm.nih.gov/27335453" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93V51-1", "protein_name": "Protein LEAD-SENSITIVE 1", "gene_name": "PSE1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93V51", "url": "https://www.uniprot.org/uniprotkb/Q93V51" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.27335453", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional relationship of cytochrome c6 and plastocyanin in Arabidopsis.", "journal": "Nature", "date": "2002", "authors": "Gupta Rajeev, He Zengyong, Luan Sheng", "reference": { "type": "PubMed", "id": "12037572", "url": "https://pubmed.ncbi.nlm.nih.gov/12037572" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93VA3-1", "protein_name": "Cytochrome c6, chloroplastic", "gene_name": "PETJ", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", 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Arabidopsis thaliana and transcriptionally repressed by the basic leucine zipper protein GBF1.", "journal": "J. Exp. Bot.", "date": "2014", "authors": "Iglesias-Fern\u00e1ndez Raquel, Wozny Dorothee, Iriondo-de Hond Maite, O\u00f1ate-S\u00e1nchez Luis, Carbonero Pilar, Barrero-Sicilia Cristina", "reference": { "type": "PubMed", "id": "24600022", "url": "https://pubmed.ncbi.nlm.nih.gov/24600022" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93VC9-1", "protein_name": "Cathepsin B-like protease 2", "gene_name": "CATHB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94K85-1", "protein_name": "Cathepsin B-like protease 3", "gene_name": "CATHB3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93VC9", "url": "https://www.uniprot.org/uniprotkb/Q93VC9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24600022", "abstract": "", "glycosylation": [], "mutagenesis": [], 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nucleoporins Nup160 and Seh1 are required for disease resistance in Arabidopsis.", "journal": "Plant Signal. 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required for meristem growth at ambient CO\u2082 levels.", "journal": "The Plant journal : for cell and molecular biology", "date": "2013-03", "authors": "Eisenhut Marion, Planchais Severine, Cabassa C\u00e9cile, Guivarc'h Anne, Justin Anne-Marie, Taconnat Ludivine, Renou Jean-Pierre, Linka Marc, Gagneul David, Timm Stefan, Bauwe Hermann, Carol Pierre, Weber Andreas P M", "reference": { "type": "PubMed", "id": "23181524", "url": "https://pubmed.ncbi.nlm.nih.gov/23181524" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93XM7-1", "protein_name": "Mitochondrial carnitine/acylcarnitine carrier-like protein", "gene_name": "BOU", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93XM7", "url": "https://www.uniprot.org/uniprotkb/Q93XM7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], 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Soko, Tsujimoto Yayoi, Naito Satoshi, Ishikawa Masayuki", "reference": { "type": "PubMed", "id": "18474569", "url": "https://pubmed.ncbi.nlm.nih.gov/18474569" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93XY5-1", "protein_name": "Tetraspanin-18", "gene_name": "TOM2AH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q940P5-1", "protein_name": "Tetraspanin-19", "gene_name": "TOM2AH3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVU4-1", "protein_name": "Tetraspanin-20", "gene_name": "TOM2AH1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5W7-1", "protein_name": "Tobamovirus multiplication protein 2A", "gene_name": "TOM2A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93XY5", "url": "https://www.uniprot.org/uniprotkb/Q93XY5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", 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Yajun, Chang Hur-Song, Zhu Tong, Wang Xun, Harper Jeff F", "reference": { "type": "PubMed", "id": "12481097", "url": "https://pubmed.ncbi.nlm.nih.gov/12481097" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93Y23-1", "protein_name": "Flavin-containing monooxygenase FMO GS-OX4", "gene_name": "FMOGS-OX4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SIN5-1", "protein_name": "Protein COLD-REGULATED 15B, chloroplastic", "gene_name": "COR15B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93Y23", "url": "https://www.uniprot.org/uniprotkb/Q93Y23" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12481097", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Biol.", "date": "2003", "authors": "Stenzel Irene, Hause Bettina, Miersch Otto, Kurz Tobias, Maucher Helmut, Weichert Heiko, Ziegler J\u00f6rg, Feussner Ivo, Wasternack Claus", "reference": { "type": "PubMed", "id": "12777050", "url": "https://pubmed.ncbi.nlm.nih.gov/12777050" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93ZC5-1", "protein_name": "Allene oxide cyclase 4, chloroplastic", "gene_name": "AOC4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LS02-1", "protein_name": "Allene oxide cyclase 2, chloroplastic", "gene_name": "AOC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LS03-1", "protein_name": "Allene oxide cyclase 1, chloroplastic", "gene_name": "AOC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LS01-1", "protein_name": "Allene oxide cyclase 3, chloroplastic", "gene_name": "AOC3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, 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Virol.", "date": "2004", "authors": "Yoshii Motoyasu, Nishikiori Masaki, Tomita Kayo, Yoshioka Norimichi, Kozuka Reiko, Naito Satoshi, Ishikawa Masayuki", "reference": { "type": "PubMed", "id": "15163703", "url": "https://pubmed.ncbi.nlm.nih.gov/15163703" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93ZT6-1", "protein_name": "Eukaryotic translation initiation factor isoform 4G-1", "gene_name": "EIF(ISO)4G1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82233-1", "protein_name": "Eukaryotic translation initiation factor isoform 4G-2", "gene_name": "EIF(ISO)4G2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q76E23-1", "protein_name": "Eukaryotic translation initiation factor 4G", "gene_name": "EIF4G", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93ZT6", "url": "https://www.uniprot.org/uniprotkb/Q93ZT6" } ], "common_name": 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Biol.", "date": "2010", "authors": "Lellis Andrew D, Allen M Leah, Aertker Alice W, Tran Jonathan K, Hillis David M, Harbin Courtney R, Caldwell Christian, Gallie Daniel R, Browning Karen S", "reference": { "type": "PubMed", "id": "20694742", "url": "https://pubmed.ncbi.nlm.nih.gov/20694742" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93ZT6-1", "protein_name": "Eukaryotic translation initiation factor isoform 4G-1", "gene_name": "EIF(ISO)4G1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82233-1", "protein_name": "Eukaryotic translation initiation factor isoform 4G-2", "gene_name": "EIF(ISO)4G2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93ZT6", "url": "https://www.uniprot.org/uniprotkb/Q93ZT6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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Shengying, Zhang Yang, Ao Ying, Liu Bing, Feng Dongru, Wang Jinfa, Wang Hongbin", "reference": { "type": "PubMed", "id": "22514699", "url": "https://pubmed.ncbi.nlm.nih.gov/22514699" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q940L5-1", "protein_name": "Inositol diphosphatase DSP4", "gene_name": "DSP4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q940L5", "url": "https://www.uniprot.org/uniprotkb/Q940L5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22514699", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" 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suppresses hypersensitive cell death.", "journal": "European journal of biochemistry", "date": "2003-06", "authors": "Belenghi Beatrice, Acconcia Filippo, Trovato Maurizio, Perazzolli Michele, Bocedi Alessio, Polticelli Fabio, Ascenzi Paolo, Delledonne Massimo", "reference": { "type": "PubMed", "id": "12787025", "url": "https://pubmed.ncbi.nlm.nih.gov/12787025" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q945Q1-1", "protein_name": "Cysteine proteinase inhibitor 1", "gene_name": "CYS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q945Q1", "url": "https://www.uniprot.org/uniprotkb/Q945Q1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12787025", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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seedling roots exposed to the munition hexahydro-1,3,5-trinitro-1,3,5-triazine.", "journal": "Environ. Sci. Technol.", "date": "2005", "authors": "Ekman Drew R, Wolfe N Lee, Dean Jeffrey F D", "reference": { "type": "PubMed", "id": "16173598", "url": "https://pubmed.ncbi.nlm.nih.gov/16173598" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94A16-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial", "gene_name": "CYP21-3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94A16", "url": "https://www.uniprot.org/uniprotkb/Q94A16" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16173598", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation.", "journal": "Nature genetics", "date": "2008-05", "authors": "Kanno Tatsuo, Bucher Etienne, Daxinger Lucia, Huettel Bruno, B\u00f6hmdorfer Gudrun, Gregor Wolfgang, Kreil David P, Matzke Marjori, Matzke Antonius J M", "reference": { "type": "PubMed", "id": "18425128", "url": "https://pubmed.ncbi.nlm.nih.gov/18425128" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94A79-1", "protein_name": "Protein DEFECTIVE IN MERISTEM SILENCING 3", "gene_name": "DMS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK40-1", "protein_name": "DNA-directed RNA polymerases IV and V subunit 2", "gene_name": "NRPD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5D869-1", "protein_name": "DNA-directed RNA polymerase V subunit 1", "gene_name": "NRPD1B; 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Biophys. Res. Commun.", "date": "2008", "authors": "Bang Woo Young, Kim Se Won, Jeong In Sil, Koiwa Hisashi, Bahk Jeong Dong", "reference": { "type": "PubMed", "id": "18541146", "url": "https://pubmed.ncbi.nlm.nih.gov/18541146" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94A79-1", "protein_name": "Protein DEFECTIVE IN MERISTEM SILENCING 3", "gene_name": "DMS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S9K9-1", "protein_name": "Transcription factor MYB3", "gene_name": "MYB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5YDB6-1", "protein_name": "RNA polymerase II C-terminal domain phosphatase-like 1", "gene_name": "CPL1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94A79", "url": "https://www.uniprot.org/uniprotkb/Q94A79" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18541146", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]