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"Human and mouse macrophage-inducible C-type lectin (Mincle) bind Candida albicans.", "journal": "Glycobiology", "date": "2008", "authors": "Bugarcic A, Hitchens K, Beckhouse AG, Wells CA, Ashman RB, Blanchard H", "reference": { "type": "PubMed", "id": "18509109", "url": "https://pubmed.ncbi.nlm.nih.gov/18509109" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9R0Q8-1", "protein_name": "C-type lectin domain family 4 member E", "gene_name": "Clec4e", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ULY5-1", "protein_name": "C-type lectin domain family 4 member E", "gene_name": "CLEC4E", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9R0Q8", "url": "https://www.uniprot.org/uniprotkb/Q9R0Q8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18509109", "abstract": "", "glycosylation": [], 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Hoshino Y, Oyamada A, Yamada H, Ono K, Suyama M, Iwakura Y, Yoshikai Y, Yamasaki S", "reference": { "type": "PubMed", "id": "23602766", "url": "https://pubmed.ncbi.nlm.nih.gov/23602766" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9R0Q8-1", "protein_name": "C-type lectin domain family 4 member E", "gene_name": "Clec4e", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P43405-1", "protein_name": "Tyrosine-protein kinase SYK", "gene_name": "SYK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H195-1", "protein_name": "Mucin-3B", "gene_name": "MUC3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULY5-1", "protein_name": "C-type lectin domain family 4 member E", "gene_name": "CLEC4E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30273-1", "protein_name": "High affinity immunoglobulin epsilon receptor subunit gamma", "gene_name": "FCER1G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUN9-1", "protein_name": "C-type lectin 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"uniprot_canonical_ac": "Q02817-1", "protein_name": "Mucin-2", "gene_name": "MUC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAX7-1", "protein_name": "Mucin-7", "gene_name": "MUC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXI8-1", "protein_name": "C-type lectin domain family 4 member D", "gene_name": "CLEC4D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07948-1", "protein_name": "Tyrosine-protein kinase Lyn", "gene_name": "LYN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16885-1", "protein_name": "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2", "gene_name": "PLCG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N387-1", "protein_name": "Mucin-15", "gene_name": "MUC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N307-1", "protein_name": "Mucin-20", "gene_name": "MUC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3R2-1", "protein_name": "Mucin-13", "gene_name": "MUC13", "tax_name": "Human" }, { 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[] } ] }, { "title": "Rabgap1 promotes recycling of active beta1 integrins to support effective cell migration.", "journal": "Journal of cell science", "date": "2020", "authors": "Samarelli AV, Ziegler T, Meves A, Fassler R, Bottcher RT", "reference": { "type": "PubMed", "id": "32843574", "url": "https://pubmed.ncbi.nlm.nih.gov/32843574" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2AWA9-1", "protein_name": "Rab GTPase-activating protein 1", "gene_name": "Rabgap1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A2AWA9", "url": "https://www.uniprot.org/uniprotkb/A2AWA9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.32843574", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of murine IRAK-M.", "journal": "Biochemical and biophysical research communications", "date": "2002", "authors": "Rosati O, Martin MU", "reference": { "type": "PubMed", "id": "12054681", "url": "https://pubmed.ncbi.nlm.nih.gov/12054681" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8K4B2-1", "protein_name": "Interleukin-1 receptor-associated kinase 3", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "IRAK-M is a negative regulator of Toll-like receptor signaling.", "journal": "Cell", "date": "2002", "authors": "Kobayashi K, Hernandez LD, Galan JE, Janeway CA Jr, Medzhitov R, Flavell RA", "reference": { "type": "PubMed", "id": "12150927", "url": "https://pubmed.ncbi.nlm.nih.gov/12150927" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8K4B2-1", "protein_name": "Interleukin-1 receptor-associated kinase 3", "gene_name": "Irak3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8K4B2", "url": "https://www.uniprot.org/uniprotkb/Q8K4B2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12150927", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"Early B cell factor 4 modulates FAS-mediated apoptosis and promotes cytotoxic function in human immune cells.", "journal": "Proc. 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U.S.A.", "date": "2022", "authors": "Kubo S, Kataria R, Yao Y, Gabrielski JQ, Zheng L, Markowitz TE, Chan W, Song J, Boddapati AK, Saeki K, Haupl B, Park AY, Cheng YH, Cui J, Oellerich T, Lenardo MJ", "reference": { "type": "PubMed", "id": "35939714", "url": "https://pubmed.ncbi.nlm.nih.gov/35939714" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8K4J2-1", "protein_name": "Transcription factor COE4", "gene_name": "Ebf4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P42229-1", "protein_name": "Signal transducer and activator of transcription 5A", "gene_name": "STAT5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQW3-2", "protein_name": "Transcription factor COE4", "gene_name": "EBF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27361-1", "protein_name": "Mitogen-activated protein kinase 3", "gene_name": "MAPK3", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8K4J2", "url": "https://www.uniprot.org/uniprotkb/Q8K4J2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.35939714", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The lack of chromosomal protein Hmg1 does not disrupt cell growth but causes lethal hypoglycaemia in newborn mice.", "journal": "Nat. Genet.", "date": "1999", "authors": "Calogero S, Grassi F, Aguzzi A, Voigtl\u00e4nder T, Ferrier P, Ferrari S, Bianchi M E", "reference": { "type": "PubMed", "id": "10391216", "url": "https://pubmed.ncbi.nlm.nih.gov/10391216" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P63158-1", "protein_name": "High mobility group protein B1", "gene_name": "Hmgb1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P63158", "url": "https://www.uniprot.org/uniprotkb/P63158" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10391216", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"protein_name": "High mobility group protein B1", "gene_name": "HMGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63159-1", "protein_name": "High mobility group protein B1", "gene_name": "Hmgb1l2; Hmgb1; LOC134483981", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q8IWL1-1", "protein_name": "Pulmonary surfactant-associated protein A2", "gene_name": "SFTPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWL2-1", "protein_name": "Pulmonary surfactant-associated protein A1", "gene_name": "SFTPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16671-1", "protein_name": "Platelet glycoprotein 4", "gene_name": "CD36", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60603-1", "protein_name": "Toll-like receptor 2", "gene_name": "TLR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57764-1", "protein_name": "Gasdermin-D", "gene_name": 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"table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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Harada Kenji, Gotoda Takanari, Nagai Ryozo, Kadowaki Takashi, Ishibashi Shun, Yamada Nobuhiro, Osuga Jun-ichi, Shimano Hitoshi", "reference": { "type": "PubMed", "id": "16040616", "url": "https://pubmed.ncbi.nlm.nih.gov/16040616" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P63158-1", "protein_name": "High mobility group protein B1", "gene_name": "Hmgb1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P63158", "url": "https://www.uniprot.org/uniprotkb/P63158" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16040616", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "High mobility group box 1 protein interacts with multiple Toll-like receptors.", "journal": "Am. J. Physiol.", "date": "2006", "authors": "Park Jong Sung, Gamboni-Robertson Fabia, He Qianbin, Svetkauskaite Daiva, Kim Jae-Yeol, Strassheim Derek, Sohn Jang-Won, Yamada Shingo, Maruyama Ikuro, Banerjee Anirban, Ishizaka Akitoshi, Abraham Edward", "reference": { "type": "PubMed", "id": "16267105", "url": "https://pubmed.ncbi.nlm.nih.gov/16267105" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P63158-1", "protein_name": "High mobility group protein B1", "gene_name": "Hmgb1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P63158", "url": "https://www.uniprot.org/uniprotkb/P63158" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16267105", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nucleotide sequence of a mouse cDNA encoding the nonhistone chromosomal high mobility group protein-1 (HMG1).", "journal": "Nucleic Acids Res.", "date": "1992", "authors": "Yotov WV, St-Arnaud R", "reference": { "type": "PubMed", "id": "1630928", "url": "https://pubmed.ncbi.nlm.nih.gov/1630928" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P63158-1", "protein_name": "High mobility group protein B1", "gene_name": "Hmgb1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P63158", "url": "https://www.uniprot.org/uniprotkb/P63158" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.1630928", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cutting edge: extracellular high mobility group box-1 protein is a proangiogenic cytokine.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2006-01-01", "authors": "Mitola Stefania, Belleri Mirella, Urbinati Chiara, Coltrini Daniela, Sparatore Bianca, Pedrazzi Marco, Melloni Edon, Presta Marco", "reference": { "type": "PubMed", "id": "16365390", "url": "https://pubmed.ncbi.nlm.nih.gov/16365390" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P63158-1", "protein_name": "High mobility group protein B1", "gene_name": "Hmgb1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P63158", "url": "https://www.uniprot.org/uniprotkb/P63158" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus 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}, { "uniprot_canonical_ac": "Q8IWL1-1", "protein_name": "Pulmonary surfactant-associated protein A2", "gene_name": "SFTPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWL2-1", "protein_name": "Pulmonary surfactant-associated protein A1", "gene_name": "SFTPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16671-1", "protein_name": "Platelet glycoprotein 4", "gene_name": "CD36", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60603-1", "protein_name": "Toll-like receptor 2", "gene_name": "TLR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57764-1", "protein_name": "Gasdermin-D", "gene_name": "GSDMD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60443-1", "protein_name": "Gasdermin-E", "gene_name": "GSDME", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00206-1", "protein_name": "Toll-like receptor 4", "gene_name": "TLR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18428-1", "protein_name": "Lipopolysaccharide-binding protein", "gene_name": 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"gene_name": "CD14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23297-1", "protein_name": "Protein S100-A1", "gene_name": "S100A1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P63158", "url": "https://www.uniprot.org/uniprotkb/P63158" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23446148", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 25 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "M\u00e9nage \u00e0 Trois in stress: DAMPs, redox and autophagy.", "journal": "Seminars in cancer biology", "date": "2013-10", "authors": "Li Guanqiao, Tang Daolin, Lotze Michael T", "reference": { "type": "PubMed", "id": "23994764", "url": "https://pubmed.ncbi.nlm.nih.gov/23994764" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P63158-1", "protein_name": "High mobility group protein B1", "gene_name": "Hmgb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P09429-1", "protein_name": "High mobility group protein B1", "gene_name": "HMGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63159-1", "protein_name": "High mobility group protein B1", "gene_name": "Hmgb1l2; Hmgb1; LOC134483981", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P10103-1", "protein_name": "High mobility group protein B1", "gene_name": "HMGB1", "tax_name": "Bovine" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P63158", "url": "https://www.uniprot.org/uniprotkb/P63158" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23994764", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Conditional ablation of HMGB1 in mice reveals its protective function against endotoxemia and bacterial infection.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-12-17", "authors": "Yanai Hideyuki, Matsuda Atsushi, An Jianbo, Koshiba Ryuji, Nishio Junko, Negishi Hideo, Ikushima Hiroaki, Onoe Takashi, Ohdan Hideki, Yoshida Nobuaki, Taniguchi Tadatsugu", "reference": { "type": "PubMed", "id": "24302768", "url": "https://pubmed.ncbi.nlm.nih.gov/24302768" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P63158-1", "protein_name": "High mobility group protein B1", "gene_name": "Hmgb1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P63158", "url": "https://www.uniprot.org/uniprotkb/P63158" } 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Cell Biol.", "date": "1988", "authors": "Rauvala H, Merenmies J, Pihlaskari R, Korkolainen M, Huhtala ML, Panula P", "reference": { "type": "PubMed", "id": "2461949", "url": "https://pubmed.ncbi.nlm.nih.gov/2461949" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P63158-1", "protein_name": "High mobility group protein B1", "gene_name": "Hmgb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P63159-1", "protein_name": "High mobility group protein B1", "gene_name": "Hmgb1l2; Hmgb1; LOC134483981", "tax_name": "Rat" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P63158", "url": "https://www.uniprot.org/uniprotkb/P63158" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.2461949", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Patterns", "date": "2002", "authors": "Menke Douglas B, Page David C", "reference": { "type": "PubMed", "id": "12617826", "url": "https://pubmed.ncbi.nlm.nih.gov/12617826" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q811W2-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "Cyp26b1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R189-1", "protein_name": "Monocyte to macrophage differentiation factor 2", "gene_name": "Mmd2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P59509-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 19", "gene_name": "Adamts19", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CQN4-1", "protein_name": "Sclerostin domain-containing protein 1", "gene_name": "Sostdc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q811W1-1", 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}, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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Chem.", "date": "2001", "authors": "Chappell S A, Owens G C, Mauro V P", "reference": { "type": "PubMed", "id": "11470798", "url": "https://pubmed.ncbi.nlm.nih.gov/11470798" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O89086-1", "protein_name": "RNA-binding protein 3", "gene_name": "Rbm3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O89086", "url": "https://www.uniprot.org/uniprotkb/O89086" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11470798", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rab8b GTPase, a protein transport regulator, is an interacting partner of otoferlin, defective in a human autosomal recessive deafness form.", "journal": "Hum. Mol. Genet.", "date": "2008", "authors": "Heidrych Paulina, Zimmermann Ulrike, Bress Andreas, Pusch Carsten M, Ruth Peter, Pfister Markus, Knipper Marlies, Blin Nikolaus", "reference": { "type": "PubMed", "id": "18772196", "url": "https://pubmed.ncbi.nlm.nih.gov/18772196" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P61028-1", "protein_name": "Ras-related protein Rab-8B", "gene_name": "Rab8b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ESF1-1", "protein_name": "Otoferlin", "gene_name": "Otof", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ERC5-1", "protein_name": "Otoferlin", "gene_name": "Otof", "tax_name": "Rat" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P61028", "url": "https://www.uniprot.org/uniprotkb/P61028" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18772196", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rab8b Regulates Transport of West Nile Virus Particles from Recycling Endosomes.", "journal": "The Journal of biological chemistry", "date": "2016", "authors": "Kobayashi S, Suzuki T, Kawaguchi A, Phongphaew W, Yoshii K, Iwano T, Harada A, Kariwa H, Orba Y, Sawa H", "reference": { "type": "PubMed", "id": "26817838", "url": "https://pubmed.ncbi.nlm.nih.gov/26817838" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P61028-1", "protein_name": "Ras-related protein Rab-8B", "gene_name": "Rab8b", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P61028", "url": "https://www.uniprot.org/uniprotkb/P61028" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.26817838", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The RNA-binding protein gene, hermes, is expressed at high levels in the developing heart.", "journal": "Mech. Dev.", "date": "1999", "authors": "Gerber WV, Yatskievych TA, Antin PB, Correia KM, Conlon RA, Krieg PA", "reference": { "type": "PubMed", "id": "10096065", "url": "https://pubmed.ncbi.nlm.nih.gov/10096065" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9WVB0-1", "protein_name": "RNA-binding protein with multiple splicing", "gene_name": "Rbpms", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9W6I1-1", "protein_name": "RNA-binding protein with multiple splicing 2", "gene_name": "RBPMS2", "tax_name": "Chicken" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9WVB0", "url": "https://www.uniprot.org/uniprotkb/Q9WVB0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10096065", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tissue expression patterns identify mouse cilia genes.", "journal": "Physiological genomics", "date": "2008", "authors": "McClintock TS, Glasser CE, Bose SC, Bergman DA", "reference": { "type": "PubMed", "id": "17971504", "url": "https://pubmed.ncbi.nlm.nih.gov/17971504" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R1Z4-1", "protein_name": 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domain-containing protein 1", "gene_name": "Riiad1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q2MH31-1", "protein_name": "Sperm microtubule inner protein 6", "gene_name": "Spmip6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62252-1", "protein_name": "Sperm surface protein Sp17", "gene_name": "Spa17", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D9J2-1", "protein_name": "Ciliary microtubule inner protein 4", "gene_name": "Cimip4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAJ2-1", "protein_name": "Tektin-1", "gene_name": "Tekt1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6V5K9-1", "protein_name": "Zinc finger protein 474", "gene_name": "Znf474", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K4K1-1", "protein_name": "Centrin-4", "gene_name": "Cetn4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAQ4-1", "protein_name": "Uncharacterized protein C2orf81 homolog", "gene_name": "1700003E16Rik", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UFY4-1", "protein_name": "Radial spoke head protein 3 homolog A", "gene_name": "Rsph3a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6NZK8-1", "protein_name": "Protein tyrosine phosphatase domain-containing protein 1", "gene_name": "Ptpdc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q0VFX2-1", "protein_name": "Cilia- and flagella-associated protein 157", "gene_name": "Cfap157", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BKE9-1", "protein_name": "Intraflagellar transport protein 74 homolog", "gene_name": "Ift74", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99P25-1", "protein_name": "Translin-associated factor X-interacting protein 1", "gene_name": "Tsnaxip1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSV9-1", "protein_name": "Enkurin domain-containing protein 1", "gene_name": "Enkd1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D9T8-1", "protein_name": "EF-hand domain-containing protein 1", "gene_name": "Efhc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VHI7-1", "protein_name": "Dynein regulatory complex subunit 2", "gene_name": "Ccdc65; Drc2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5NCY3-1", "protein_name": "Cytochrome b5 domain-containing protein 1", "gene_name": "Cyb5d1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SPX1-1", "protein_name": "Coiled-coil domain-containing protein 157", "gene_name": "Ccdc157", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5F201-1", "protein_name": "Cilia- and flagella-associated protein 52", "gene_name": "Cfap52", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BH53-1", "protein_name": "Cilia- and flagella-associated protein 69", "gene_name": "Cfap69", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAE7-1", "protein_name": "Uncharacterized protein C11orf97 homolog", "gene_name": "1700012B09Rik", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P8Y0-1", "protein_name": "Cilia- and flagella-associated protein 161", "gene_name": "Cfap161", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5T8-1", "protein_name": "Cilia- and flagella-associated protein 263", "gene_name": "Cfap263", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDT7-1", "protein_name": "Ciliary-associated calcium-binding coiled-coil protein 1", "gene_name": "Cabcoco1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UY23-1", "protein_name": "Ferredoxin-fold anticodon-binding domain-containing protein 1 homolog", "gene_name": "Fdxacb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q149L6-1", "protein_name": "DnaJ homolog subfamily B member 14", "gene_name": "Dnajb14", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3USS3-1", "protein_name": "Dynein regulatory complex protein 1", "gene_name": "Drc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99J38-1", "protein_name": "Intraflagellar transport protein 70A1", "gene_name": "Ift70a1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88978-1", "protein_name": "Dynein axonemal assembly factor 11", "gene_name": "Dnaaf11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D9W1-1", "protein_name": "Ciliary microtubule-associated protein 3", "gene_name": "Cimap3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAM1-1", "protein_name": "Leucine-rich repeat-containing protein 34", "gene_name": "Lrrc34", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D4B2-1", "protein_name": "Outer dynein arm-docking complex subunit 4", "gene_name": "Odad4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C0S4-1", "protein_name": "Tetratricopeptide repeat protein 21A", "gene_name": "Ttc21a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "B8JKV0-1", "protein_name": "Protein AMN1 homolog", "gene_name": "Amn1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5M9-1", "protein_name": "Zinc finger protein 688", "gene_name": "Zfp688", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9F7-1", "protein_name": "Coiled-coil domain-containing protein 146", "gene_name": "Ccdc146", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5Y1-1", "protein_name": "Coiled-coil domain-containing protein 39", "gene_name": "Ccdc39", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M6Z4-1", "protein_name": "Kinesin-like protein KIF27", "gene_name": "Kif27", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D581-1", "protein_name": "EF-hand calcium-binding domain-containing protein 10", "gene_name": "Efcab10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QY05-1", "protein_name": "Insulin-like peptide INSL6", "gene_name": "Insl6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5F204-1", "protein_name": "Putative malate dehydrogenase 1B", "gene_name": "Mdh1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D0Z3-1", "protein_name": "Transmembrane protein 53", "gene_name": "Tmem53", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3KNL4-1", "protein_name": "UPF0728 protein C10orf53 homolog", "gene_name": "", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BHN9-1", "protein_name": "Uncharacterized protein CLBA1", "gene_name": "Clba1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C633-1", "protein_name": "Calcium-binding and spermatid-specific protein 1", "gene_name": "Cabs1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "D3YVL2-1", "protein_name": "Cilia- and flagella-associated protein 70", "gene_name": "Cfap70", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R1Z4", "url": "https://www.uniprot.org/uniprotkb/Q8R1Z4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17971504", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 74 } ], "sort_fields": [ 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a novel Leucine-rich repeat protein and candidate PP1 regulatory subunit expressed in developing spermatids.", "journal": "BMC Cell Biol.", "date": "2008", "authors": "Wang R, Sperry AO", "reference": { "type": "PubMed", "id": "18237440", "url": "https://pubmed.ncbi.nlm.nih.gov/18237440" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R1Z4-1", "protein_name": "Protein phosphatase 1 regulatory subunit 42", "gene_name": 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TLRR (lrrc67) interacts with PP1 and is associated with a cytoskeletal complex in the testis.", "journal": "Biol. Cell", "date": "2010", "authors": "Wang R, Kaul A, Sperry AO", "reference": { "type": "PubMed", "id": "19886865", "url": "https://pubmed.ncbi.nlm.nih.gov/19886865" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R1Z4-1", "protein_name": "Protein phosphatase 1 regulatory subunit 42", "gene_name": "Ppp1r42", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61768-1", "protein_name": "Kinesin-1 heavy chain", "gene_name": "Kif5b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P63087-1", "protein_name": "Serine/threonine-protein phosphatase PP1-gamma catalytic subunit", "gene_name": "Ppp1cc", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R1Z4", "url": "https://www.uniprot.org/uniprotkb/Q8R1Z4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19886865", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PP1 forms an active complex with TLRR (lrrc67), a putative PP1 regulatory subunit, during the early stages of spermiogenesis in mice.", "journal": "PloS one", "date": "2011", "authors": "Wang R, Sperry AO", "reference": { "type": "PubMed", "id": "21738792", "url": "https://pubmed.ncbi.nlm.nih.gov/21738792" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R1Z4-1", "protein_name": "Protein phosphatase 1 regulatory subunit 42", "gene_name": "Ppp1r42", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R1Z4", "url": "https://www.uniprot.org/uniprotkb/Q8R1Z4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.21738792", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of the purine biosynthetic enzyme phosphoribosyl formylglycinamidine synthase in neurons.", "journal": "Journal of neurochemistry", "date": "2018", "authors": "Mangold CA, Yao PJ, Du M, Freeman WM, Benkovic SJ, Szpara ML", "reference": { "type": "PubMed", "id": "29337348", "url": "https://pubmed.ncbi.nlm.nih.gov/29337348" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5SUR0-1", "protein_name": "Phosphoribosylformylglycinamidine synthase", "gene_name": "Pfas", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "D4AB17-1", "protein_name": "Phosphoribosylformylglycinamidine synthase", "gene_name": "Pfas", "tax_name": "Rat" }, { "uniprot_canonical_ac": "O15067-1", "protein_name": "Phosphoribosylformylglycinamidine synthase", "gene_name": "PFAS", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q5SUR0", "url": "https://www.uniprot.org/uniprotkb/Q5SUR0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.29337348", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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Clin. Invest.", "date": "2011", "authors": "Heeringa SF, Chernin G, Chaki M, Zhou W, Sloan AJ, Ji Z, Xie LX, Salviati L, Hurd TW, Vega-Warner V, Killen PD, Raphael Y, Ashraf S, Ovunc B, Schoeb DS, McLaughlin HM, Airik R, Vlangos CN, Gbadegesin R, Hinkes B, Saisawat P, Trevisson E, Doimo M, Casarin A, Pertegato V, Giorgi G, Prokisch H, Rotig A, Nurnberg G, Becker C, Wang S, Ozaltin F, Topaloglu R, Bakkaloglu A, Bakkaloglu SA, Muller D, Beissert A, Mir S, Berdeli A, Varpizen S, Zenker M, Matejas V, Santos-Ocana C, Navas P, Kusakabe T, Kispert A, Akman S, Soliman NA, Krick S, Mundel P, Reiser J, Nurnberg P, Clarke CF, Wiggins RC, Faul C, Hildebrandt F", "reference": { "type": "PubMed", "id": "21540551", "url": "https://pubmed.ncbi.nlm.nih.gov/21540551" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R1S0-1", "protein_name": "Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial", "gene_name": "Coq6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": 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"uniprot_canonical_ac": "Q5T2R2-1", "protein_name": "All trans-polyprenyl-diphosphate synthase PDSS1", "gene_name": "PDSS1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R1S0", "url": "https://www.uniprot.org/uniprotkb/Q8R1S0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.21540551", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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injury through STING-mediated inflammatory pathways in macrophages.", "journal": "Immunity, inflammation and disease", "date": "2024-02", "authors": "Peng Dadi, Huang Zuotian, Yang Hang, Luo Yunhai, Wu Zhongjun", "reference": { "type": "PubMed", "id": "38372470", "url": "https://pubmed.ncbi.nlm.nih.gov/38372470" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61074-1", "protein_name": "Protein phosphatase 1G", "gene_name": "Ppm1g", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61074", "url": "https://www.uniprot.org/uniprotkb/Q61074" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38372470", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 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"https://www.uniprot.org/uniprotkb/Q61074" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9271424", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]