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Biol. Chem.", "date": "1997", "authors": "Biffo S, Sanvito F, Costa S, Preve L, Pignatelli R, Spinardi L, Marchisio PC", "reference": { "type": "PubMed", "id": "9374518", "url": "https://pubmed.ncbi.nlm.nih.gov/9374518" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O55135-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P56537-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "EIF6", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O55135", "url": "https://www.uniprot.org/uniprotkb/O55135" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9374518", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Med.", "date": "2016", "authors": "Osorio FG, Soria-Valles C, Santiago-Fernandez O, Bernal T, Mittelbrunn M, Colado E, Rodriguez F, Bonzon-Kulichenko E, Vazquez J, Porta-de-la-Riva M, Ceron J, Fueyo A, Li J, Green AR, Freije JM, Lopez-Otin C", "reference": { "type": "PubMed", "id": "26692333", "url": "https://pubmed.ncbi.nlm.nih.gov/26692333" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60751-1", "protein_name": "Insulin-like growth factor 1 receptor", "gene_name": "Igf1r", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P08069-1", "protein_name": "Insulin-like growth factor 1 receptor", "gene_name": "IGF1R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46379-1", "protein_name": "Large proline-rich protein BAG6", "gene_name": "BAG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUN8-1", "protein_name": "Derlin-1", "gene_name": "DERL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q91X58-1", "protein_name": "AN1-type zinc finger protein 2B", "gene_name": "Zfand2b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96CS3-1", "protein_name": "FAS-associated factor 2", "gene_name": "FAF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WV99-1", "protein_name": "AN1-type zinc finger protein 2B", "gene_name": "ZFAND2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95714-1", "protein_name": "E3 ubiquitin-protein ligase HERC2", "gene_name": "HERC2", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60751", "url": "https://www.uniprot.org/uniprotkb/Q60751" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.26692333", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning of cDNA for the alpha subunit of mouse insulin-like growth factor I receptor and the role of the receptor in metanephric development.", "journal": "Proc. 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}, { "uniprot_canonical_ac": "O75031-1", "protein_name": "Heat shock factor 2-binding protein", "gene_name": "HSF2BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DIA7-1", "protein_name": "Break repair meiotic recombinase recruitment factor 1", "gene_name": "Brme1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9D4G2", "url": "https://www.uniprot.org/uniprotkb/Q9D4G2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 167, "end_pos": 167, "sequence_org": "S", "sequence_mut": "L", "comment": "Mutant females show reduced fertility with smaller litter sizes. Produces DNA repair defects during meiotic prophase I. Reduces loading of BRME1 and HSF2BP at the recombination nodules. Males show a slight non-significant reduction in fertility. No effect on interaction with BRCA2 and BRME1. No effect on subcellular location. Reduces BRME1 expression.", "evidence": [ { "database": "UniProtKB", "id": "Q9D4G2", "url": "https://www.uniprot.org/uniprotkb/Q9D4G2" }, { "database": "PubMed", "id": "32845237", "url": "https://pubmed.ncbi.nlm.nih.gov/32845237" } ], "uniprot_canonical_ac": "Q9D4G2-1" } ], "record_id": "pubmed.32845237", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "HSF2BP protects against acute liver injury by regulating HSF2/HSP70/MAPK signaling in mice.", "journal": "Cell death & disease", "date": "2022", "authors": "Bi J, Zhang J, Ke M, Wang T, Wang M, Liu W, Du Z, Ren Y, Zhang S, Wu Z, Lv Y, Wu R", "reference": { "type": "PubMed", "id": "36167792", "url": "https://pubmed.ncbi.nlm.nih.gov/36167792" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9D4G2-1", "protein_name": "Heat shock factor 2-binding protein", "gene_name": "Hsf2bp", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9D4G2", "url": "https://www.uniprot.org/uniprotkb/Q9D4G2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.36167792", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P0C673", "url": "https://www.uniprot.org/uniprotkb/P0C673" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.36607983", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "IgSF11 deficiency alleviates osteoarthritis in mice by suppressing early subchondral bone changes.", "journal": "Experimental & molecular medicine", "date": "2023-12", "authors": "Kim Gyeong Min, Kim Jihee, Lee June-Yong, Park Min-Chan, Lee Soo Young", "reference": { "type": "PubMed", "id": "38036734", "url": "https://pubmed.ncbi.nlm.nih.gov/38036734" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0C673-1", "protein_name": "Immunoglobulin superfamily member 11", "gene_name": "Igsf11", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P0C673", "url": "https://www.uniprot.org/uniprotkb/P0C673" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38036734", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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initiation factor 5A signals to nuclear localization of the protein.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2007", "authors": "Parreiras-E-Silva Lucas T, Gomes Marcelo D, Oliveira Eduardo B, Costa-Neto Claudio M", "reference": { "type": "PubMed", "id": "17707773", "url": "https://pubmed.ncbi.nlm.nih.gov/17707773" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P63242-1", "protein_name": "Eukaryotic translation initiation factor 5A-1", "gene_name": "Eif5a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P63242", "url": "https://www.uniprot.org/uniprotkb/P63242" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17707773", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Deoxyhypusine synthase mutations alter the post-translational modification of eukaryotic initiation factor 5A resulting in impaired human and mouse neural homeostasis.", "journal": "HGG advances", "date": "2023-07-13", "authors": "Padgett Leah R, Shinkle Mollie R, Rosario Spencer, Stewart Tracy Murray, Foley Jackson R, Casero Robert A, Park Myung Hee, Chung Wendy K, Mastracci Teresa L", "reference": { "type": "PubMed", "id": "37333770", "url": "https://pubmed.ncbi.nlm.nih.gov/37333770" }, 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Impairs the differentiation of cells in adaptive immunity.", "evidence": [ { "database": "UniProtKB", "id": "O08900", "url": "https://www.uniprot.org/uniprotkb/O08900" }, { "database": "PubMed", "id": "34155405", "url": "https://pubmed.ncbi.nlm.nih.gov/34155405" } ], "uniprot_canonical_ac": "O08900-1" } ], "record_id": "pubmed.34155405", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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promote thymic iNKT cell development by reducing TCR signals.", "journal": "Science advances", "date": "2024-03-15", "authors": "Herr Laurenz A, Fiala Gina J, Sagar , Schaffer Anna-Maria, Hummel Jonas F, Zintchenko Marina, Raute Katrin, Velasco C\u00e1rdenas Rub\u00ed M-H, Heizmann Beate, Ebert Karolina, Fehrenbach Kerstin, Janowska Iga, Chan Susan, Tanriver Yakup, Minguet Susana, Schamel Wolfgang W", "reference": { "type": "PubMed", "id": "38489359", "url": "https://pubmed.ncbi.nlm.nih.gov/38489359" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O08900-1", "protein_name": "Zinc finger protein Aiolos", "gene_name": "Ikzf3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9B7-1", "protein_name": "Kinase D-interacting substrate of 220 kDa", "gene_name": "Kidins220", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O08900", "url": "https://www.uniprot.org/uniprotkb/O08900" 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Aiolos, a lymphoid restricted transcription factor that interacts with Ikaros to regulate lymphocyte differentiation.", "journal": "The EMBO journal", "date": "1997", "authors": "Morgan B, Sun L, Avitahl N, Andrikopoulos K, Ikeda T, Gonzales E, Wu P, Neben S, Georgopoulos K", "reference": { "type": "PubMed", "id": "9155026", "url": "https://pubmed.ncbi.nlm.nih.gov/9155026" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O08900-1", "protein_name": "Zinc finger protein Aiolos", "gene_name": "Ikzf3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q03267-1", "protein_name": "DNA-binding protein Ikaros", "gene_name": "Ikzf1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O08900", "url": "https://www.uniprot.org/uniprotkb/O08900" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9155026", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"JCAD deficiency delayed liver regenerative repair through the Hippo-YAP signalling pathway.", "journal": "Clinical and translational medicine", "date": "2024-03", "authors": "Zhang Li, Yang Yong-Yu, Xie Li, Zhou Yuan, Zhong Zhenxing, Ding Jia, Wang Zhong-Hua, Wang Yu-Li, Liu Xiu-Ping, Yu Fa-Xing, Wu Jian", "reference": { "type": "PubMed", "id": "38509842", "url": "https://pubmed.ncbi.nlm.nih.gov/38509842" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5DTX6-1", "protein_name": "Junctional cadherin 5-associated protein", "gene_name": "Jcad", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q5DTX6", "url": "https://www.uniprot.org/uniprotkb/Q5DTX6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38509842", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Biol. 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Changed homophilic interaction, being unable to interact with the wild-type protein but able to bind itself; when associated with K-317.", "evidence": [ { "database": "UniProtKB", "id": "Q91XZ4", "url": "https://www.uniprot.org/uniprotkb/Q91XZ4" }, { "database": "PubMed", "id": "27161523", "url": "https://pubmed.ncbi.nlm.nih.gov/27161523" } ], "uniprot_canonical_ac": "Q91XZ4-1" }, { "start_pos": 317, "end_pos": 317, "sequence_org": "E", "sequence_mut": "K", "comment": "Changed homophilic interaction, being unable to interact with the wild-type protein but able to bind itself; when associated with N-185.", "evidence": [ { "database": "UniProtKB", "id": "Q91XZ4", "url": "https://www.uniprot.org/uniprotkb/Q91XZ4" }, { "database": "PubMed", "id": "27161523", "url": "https://pubmed.ncbi.nlm.nih.gov/27161523" } ], "uniprot_canonical_ac": "Q91XZ4-1" }, { "start_pos": 323, "end_pos": 323, "sequence_org": "S", "sequence_mut": "R", "comment": "Changed homophilic interaction, being unable to interact with the wild-type protein but able to bind itself; when associated with E-141.", "evidence": [ { "database": "UniProtKB", "id": "Q91XZ4", "url": "https://www.uniprot.org/uniprotkb/Q91XZ4" }, { "database": "PubMed", "id": "27161523", "url": "https://pubmed.ncbi.nlm.nih.gov/27161523" } ], "uniprot_canonical_ac": "Q91XZ4-1" }, { "start_pos": 326, "end_pos": 326, "sequence_org": "L", "sequence_mut": "F", "comment": "No effect on homophilic interaction. Changed homophilic interaction; when associated with P-143.", "evidence": [ { "database": "UniProtKB", "id": "Q91XZ4", "url": "https://www.uniprot.org/uniprotkb/Q91XZ4" }, { "database": "PubMed", "id": "27161523", "url": "https://pubmed.ncbi.nlm.nih.gov/27161523" } ], "uniprot_canonical_ac": "Q91XZ4-1" }, { "start_pos": 368, "end_pos": 368, "sequence_org": "S", "sequence_mut": "R", "comment": "No effect on homophilic interaction. Changed homophilic interaction, being unable to interact with the wild-type protein but able to bind itself; when associated with V-67 and D-69.", "evidence": [ { "database": "UniProtKB", "id": "Q91XZ4", "url": "https://www.uniprot.org/uniprotkb/Q91XZ4" }, { "database": "PubMed", "id": "27161523", "url": "https://pubmed.ncbi.nlm.nih.gov/27161523" } ], "uniprot_canonical_ac": "Q91XZ4-1" }, { "start_pos": 67, "end_pos": 67, "sequence_org": "H", "sequence_mut": "V", "comment": "Changed homophilic interaction, being unable to interact with the wild-type protein but able to bind itself;when associated with D-69 and R-368.", "evidence": [ { "database": "UniProtKB", "id": "Q91XZ4", "url": "https://www.uniprot.org/uniprotkb/Q91XZ4" }, { "database": "PubMed", "id": "27161523", "url": "https://pubmed.ncbi.nlm.nih.gov/27161523" } ], "uniprot_canonical_ac": "Q91XZ4-1" }, { "start_pos": 69, "end_pos": 69, "sequence_org": "R", "sequence_mut": "D", "comment": "Changed homophilic interaction, being unable to interact with the wild-type protein but able to bind itself;when associated with V-67 and R-368.", "evidence": [ { "database": "UniProtKB", "id": "Q91XZ4", "url": "https://www.uniprot.org/uniprotkb/Q91XZ4" }, { "database": "PubMed", "id": "27161523", "url": "https://pubmed.ncbi.nlm.nih.gov/27161523" } ], "uniprot_canonical_ac": "Q91XZ4-1" } ], "record_id": "pubmed.27161523", "abstract": "", "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 20 }, { "field": "total_sites", "count": 20 }, { "field": "n_linked_sites", "count": 8 }, { "field": "o_linked_sites", "count": 12 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 20 }, { "field": "exact_n_linked_sites", "count": 8 }, { "field": "exact_o_linked_sites", "count": 12 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 20 }, { "field": "total_sites", "count": 20 }, { "field": "n_linked_sites", "count": 8 }, { "field": "o_linked_sites", "count": 12 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 20 }, { "field": "exact_n_linked_sites", "count": 8 }, { "field": "exact_o_linked_sites", "count": 12 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Diversity revealed by a novel family of cadherins expressed in neurons at a synaptic complex.", "journal": "Neuron", "date": "1998", "authors": "Kohmura N, Senzaki K, Hamada S, Kai N, Yasuda R, Watanabe M, Ishii H, Yasuda M, Mishina M, Yagi T", "reference": { "type": "PubMed", "id": "9655502", "url": "https://pubmed.ncbi.nlm.nih.gov/9655502" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O88689-1", "protein_name": "Protocadherin alpha-4", "gene_name": "Pcdha4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O88689", "url": "https://www.uniprot.org/uniprotkb/O88689" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9655502", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The complete primary structure of mouse 20S proteasomes.", "journal": "Immunogenetics", "date": "1999", "authors": "Elenich LA, Nandi D, Kent AE, McCluskey TS, Cruz M, Iyer MN, Woodward EC, Conn CW, Ochoa AL, Ginsburg DB, Monaco JJ", "reference": { "type": "PubMed", "id": "10436176", "url": "https://pubmed.ncbi.nlm.nih.gov/10436176" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z2U1-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "Psma5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QUM9-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "Psma6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1P3-1", "protein_name": "Proteasome subunit beta type-2", "gene_name": "Psmb2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z2U0-1", "protein_name": "Proteasome subunit alpha type-7", "gene_name": "Psma7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1P4-1", "protein_name": "Proteasome subunit alpha type-1", "gene_name": "Psma1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O70435-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "Psma3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O55234-1", "protein_name": "Proteasome subunit beta type-5", "gene_name": "Psmb5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P49722-1", "protein_name": "Proteasome subunit alpha type-2", "gene_name": "Psma2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1P0-1", "protein_name": "Proteasome subunit alpha type-4", "gene_name": "Psma4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1P1-1", "protein_name": "Proteasome subunit beta type-3", "gene_name": "Psmb3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2U1", "url": "https://www.uniprot.org/uniprotkb/Q9Z2U1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10436176", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proteasome activator PA200 is required for normal spermatogenesis.", "journal": "Molecular and cellular biology", "date": "2006", "authors": "Khor B, Bredemeyer AL, Huang CY, Turnbull IR, Evans R, Maggi LB Jr, White JM, Walker LM, Carnes K, Hess RA, Sleckman BP", "reference": { "type": "PubMed", "id": "16581775", "url": "https://pubmed.ncbi.nlm.nih.gov/16581775" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z2U1-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "Psma5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QUM9-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": 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E, Zhang J, Jones RC, Thyparambil S, Wang GW, Qiao X, Bardag-Gorce F, Ping P", "reference": { "type": "PubMed", "id": "16857966", "url": "https://pubmed.ncbi.nlm.nih.gov/16857966" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z2U1-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "Psma5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QUM9-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "Psma6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WVJ2-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 13", "gene_name": "Psmd13", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BJY1-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 5", "gene_name": "Psmd5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CX56-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 8", "gene_name": "Psmd8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1P3-1", 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8", "gene_name": "Psmc5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VDM4-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 2", "gene_name": "Psmd2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35955-1", "protein_name": "Proteasome subunit beta type-10", "gene_name": "Psmb10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P49722-1", "protein_name": "Proteasome subunit alpha type-2", "gene_name": "Psma2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P99026-1", "protein_name": "Proteasome subunit beta type-4", "gene_name": "Psmb4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1P0-1", "protein_name": "Proteasome subunit alpha type-4", "gene_name": "Psma4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1P1-1", "protein_name": "Proteasome subunit beta type-3", "gene_name": "Psmb3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SSW2-1", "protein_name": "Proteasome activator complex subunit 4", "gene_name": "Psme4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O09061-1", "protein_name": "Proteasome subunit beta type-1", "gene_name": "Psmb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35226-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 4", "gene_name": "Psmd4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P46471-1", "protein_name": "26S proteasome regulatory subunit 7", "gene_name": "Psmc2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BG32-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 11", "gene_name": "Psmd11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62192-1", "protein_name": "26S proteasome regulatory subunit 4", "gene_name": "Psmc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q60692-1", "protein_name": "Proteasome subunit beta type-6", "gene_name": "Psmb6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62334-1", "protein_name": "26S proteasome regulatory subunit 10B", "gene_name": "Psmc6", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2U1", "url": "https://www.uniprot.org/uniprotkb/Q9Z2U1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16857966", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 34 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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[10090]" } ], "record_id": "pubmed.22341445", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 17 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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"Li P, Wu YH, Zhu YT, Li MX, Pei HH", "reference": { "type": "PubMed", "id": "30471852", "url": "https://pubmed.ncbi.nlm.nih.gov/30471852" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P35282-1", "protein_name": "Ras-related protein Rab-21", "gene_name": "Rab21", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P35282", "url": "https://www.uniprot.org/uniprotkb/P35282" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.30471852", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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Chem.", "date": "1997", "authors": "Cheng J, Wu K, Armanini M, O'Rourke N, Dowbenko D, Lasky L A", "reference": { "type": "PubMed", "id": "9054423", "url": "https://pubmed.ncbi.nlm.nih.gov/9054423" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B1AUH1-1", "protein_name": "Receptor-type tyrosine-protein phosphatase U", "gene_name": "Ptpru", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "B1AUH1", "url": "https://www.uniprot.org/uniprotkb/B1AUH1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9054423", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"gene_name": "Psmc2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QUM9", "url": "https://www.uniprot.org/uniprotkb/Q9QUM9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22078707", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sculpting MHC class II-restricted self and non-self peptidome by the class I Ag-processing machinery and its impact on Th-cell responses.", "journal": "European journal of immunology", "date": "2013", "authors": "Spencer CT, Dragovic SM, Conant SB, Gray JJ, Zheng M, Samir P, Niu X, Moutaftsi M, Van Kaer L, Sette A, Link AJ, Joyce S", "reference": { "type": "PubMed", "id": "23386199", "url": "https://pubmed.ncbi.nlm.nih.gov/23386199" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QUM9-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "Psma6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35344-1", "protein_name": "Importin subunit alpha-4", "gene_name": "Kpna3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P26039-1", "protein_name": "Talin-1", "gene_name": "Tln1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P40142-1", "protein_name": "Transketolase", "gene_name": "Tkt", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q01339-1", "protein_name": "Beta-2-glycoprotein 1", "gene_name": "Apoh", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VCM7-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "Fgg", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P14685-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 3", "gene_name": "Psmd3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q64727-1", "protein_name": "Vinculin", "gene_name": "Vcl", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P07724-1", "protein_name": "Albumin", "gene_name": "Alb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q03265-1", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "gene_name": "Atp5f1a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV24-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "Fga", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P52480-1", "protein_name": "Pyruvate kinase PKM", "gene_name": "Pkm", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q00623-1", "protein_name": "Apolipoprotein A-I", "gene_name": "Apoa1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61820-1", "protein_name": "GTP-binding nuclear protein Ran, testis-specific isoform", "gene_name": "Rasl2-9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BND5-1", "protein_name": "Sulfhydryl oxidase 1", "gene_name": "Qsox1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P12246-1", "protein_name": "Serum amyloid P-component", "gene_name": "Apcs", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q60648-1", "protein_name": "Ganglioside GM2 activator", "gene_name": "Gm2a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88307-1", "protein_name": "Sortilin-related receptor", "gene_name": "Sorl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P29621-1", "protein_name": "Serine protease inhibitor A3C", "gene_name": "Serpina3c", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P07758-1", "protein_name": "Alpha-1-antitrypsin 1-1", "gene_name": "Serpina1a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61205-1", "protein_name": "Platelet-activating factor acetylhydrolase IB subunit alpha1", "gene_name": "Pafah1b3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61545-1", "protein_name": "RNA-binding protein EWS", "gene_name": "Ewsr1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAR7-1", "protein_name": "m7GpppX diphosphatase", "gene_name": "Dcps", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BG05-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "Hnrnpa3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R1B4-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit C", "gene_name": "Eif3c", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P98083-1", "protein_name": "SHC-transforming protein 1", "gene_name": "Shc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q60864-1", "protein_name": "Stress-induced-phosphoprotein 1", "gene_name": "Stip1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QUI6-1", "protein_name": "Atypical chemokine receptor 1", "gene_name": "Ackr1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61247-1", "protein_name": "Alpha-2-antiplasmin", "gene_name": "Serpinf2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61024-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "Asns", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P01027-1", "protein_name": "Complement C3", "gene_name": "C3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EP64-1", "protein_name": "Tenomodulin", "gene_name": "Tnmd", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P55065-1", "protein_name": "Phospholipid transfer protein", "gene_name": "Pltp", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDN6-1", "protein_name": "Thioredoxin-like protein 1", "gene_name": "Txnl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P16373-1", "protein_name": "Zinc finger protein 59", "gene_name": "Zfp59", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q924K8-1", "protein_name": "Metastasis-associated protein MTA3", "gene_name": "Mta3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62317-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "Snrpd2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61704-1", "protein_name": "Inter-alpha-trypsin inhibitor heavy chain H3", "gene_name": "Itih3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61702-1", "protein_name": "Inter-alpha-trypsin inhibitor heavy chain H1", "gene_name": "Itih1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QZ25-1", "protein_name": "Vascular non-inflammatory molecule 3", "gene_name": "Vnn3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QUM9", "url": "https://www.uniprot.org/uniprotkb/Q9QUM9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23386199", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 40 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lack of the MHC class II chaperone H2-O causes susceptibility to autoimmune diseases.", "journal": "PLoS biology", "date": "2020", "authors": "Welsh RA, Song N, Foss CA, Boronina T, Cole RN, Sadegh-Nasseri S", "reference": { "type": "PubMed", "id": "32069316", "url": "https://pubmed.ncbi.nlm.nih.gov/32069316" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QUM9-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "Psma6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R1P3-1", "protein_name": "Proteasome subunit beta type-2", "gene_name": "Psmb2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P15261-1", "protein_name": "Interferon gamma receptor 1", "gene_name": "Ifngr1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P29699-1", "protein_name": "Alpha-2-HS-glycoprotein", "gene_name": "Ahsg", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D8I1-1", "protein_name": "Marginal zone B- and B1-cell-specific protein", "gene_name": "Mzb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70195-1", "protein_name": "Proteasome subunit beta type-7", "gene_name": "Psmb7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61233-1", "protein_name": "Plastin-2", "gene_name": "Lcp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61176-1", "protein_name": "Arginase-1", "gene_name": "Arg1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O09126-1", "protein_name": "Semaphorin-4D", "gene_name": "Sema4d", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P49722-1", "protein_name": "Proteasome subunit alpha type-2", "gene_name": "Psma2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O88307-1", "protein_name": "Sortilin-related receptor", "gene_name": "Sorl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P5D4-1", "protein_name": "Centrosomal protein of 135 kDa", "gene_name": "Cep135", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P04104-1", "protein_name": "Keratin, type II cytoskeletal 1", "gene_name": "Krt1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q60930-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "Vdac2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q414-1", "protein_name": "Apolipoprotein B-100", "gene_name": "Apob", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QWV1-1", "protein_name": "Histocompatibility 2, O region alpha locus", "gene_name": "H2-Oa", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BG07-1", "protein_name": "5'-3' exonuclease PLD4", "gene_name": "Pld4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80X71-1", "protein_name": "Transmembrane protein 106B", "gene_name": "Tmem106b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JHJ8-1", "protein_name": "ICOS ligand", "gene_name": "Icoslg; Icosl", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62631-1", "protein_name": "Elongation factor 1-alpha 2", "gene_name": "Eef1a2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R016-1", "protein_name": "Bleomycin hydrolase", "gene_name": "Blmh", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q03059-1", "protein_name": "Choline O-acetyltransferase", "gene_name": "Chat", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P97825-1", "protein_name": "Jupiter microtubule associated homolog 1", "gene_name": "Jpt1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R0H5-1", "protein_name": "Keratin, type II cytoskeletal 71", "gene_name": "Krt71", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q557-1", "protein_name": "Desmoplakin", "gene_name": "Dsp", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QUM9", "url": "https://www.uniprot.org/uniprotkb/Q9QUM9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.32069316", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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