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"count": 0 } ], "sort_fields": [] } ] }, { "title": "A capping-independent function of MePCE in stabilizing 7SK snRNA and facilitating the assembly of 7SK snRNP.", "journal": "Nucleic acids research", "date": "2010", "authors": "Xue Y, Yang Z, Chen R, Zhou Q", "reference": { "type": "PubMed", "id": "19906723", "url": "https://pubmed.ncbi.nlm.nih.gov/19906723" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7L2J0-1", "protein_name": "7SK snRNA methylphosphate capping enzyme", "gene_name": "MEPCE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4G0J3-1", "protein_name": "La-related protein 7", "gene_name": "LARP7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q7L2J0", "url": "https://www.uniprot.org/uniprotkb/Q7L2J0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 447, "end_pos": 449, "sequence_org": "VLD", "sequence_mut": "AAA", "comment": "Abolished methyltransferase activity and reduced interaction with LARP7, without affecting interaction with P-TEFb.", "evidence": [ { "database": "UniProtKB", "id": "Q7L2J0", "url": "https://www.uniprot.org/uniprotkb/Q7L2J0" }, { "database": "PubMed", "id": "19906723", "url": "https://pubmed.ncbi.nlm.nih.gov/19906723" } ], "uniprot_canonical_ac": "Q7L2J0-1" } ], "record_id": "pubmed.19906723", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The 7SK snRNP associates with the little elongation complex to promote snRNA gene expression.", "journal": "The EMBO journal", "date": "2017", "authors": "Egloff S, Vitali P, Tellier M, Raffel R, Murphy S, Kiss T", "reference": { "type": "PubMed", "id": "28254838", "url": "https://pubmed.ncbi.nlm.nih.gov/28254838" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7L2J0-1", "protein_name": "7SK snRNA methylphosphate capping enzyme", "gene_name": "MEPCE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4G0J3-1", "protein_name": "La-related protein 7", "gene_name": "LARP7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q7L2J0", "url": "https://www.uniprot.org/uniprotkb/Q7L2J0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28254838", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human METTL16 is a N6-methyladenosine (m6A) methyltransferase that targets pre-mRNAs and various non-coding RNAs.", "journal": "EMBO Rep.", "date": "2017", "authors": "Warda AS, Kretschmer J, Hackert P, Lenz C, Urlaub H, Hobartner C, Sloan KE, Bohnsack MT", "reference": { "type": "PubMed", "id": "29051200", "url": "https://pubmed.ncbi.nlm.nih.gov/29051200" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7L2J0-1", "protein_name": "7SK snRNA methylphosphate capping enzyme", "gene_name": "MEPCE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4G0J3-1", "protein_name": "La-related protein 7", "gene_name": "LARP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W50-1", "protein_name": "RNA N(6)-adenosine-methyltransferase METTL16", "gene_name": "METTL16", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q7L2J0", "url": "https://www.uniprot.org/uniprotkb/Q7L2J0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of 7SK RNA 5'-gamma-phosphate methylation and retention by MePCE.", "journal": "Nature chemical biology", "date": "2019", "authors": "Yang Y, Eichhorn CD, Wang Y, Cascio D, Feigon J", "reference": { "type": "PubMed", "id": "30559425", "url": "https://pubmed.ncbi.nlm.nih.gov/30559425" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7L2J0-1", "protein_name": "7SK snRNA methylphosphate capping enzyme", "gene_name": "MEPCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q7L2J0", "url": "https://www.uniprot.org/uniprotkb/Q7L2J0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 421, "end_pos": 421, "sequence_org": "Y", "sequence_mut": "A", "comment": "Nearly abolished methyltransferase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q7L2J0", "url": "https://www.uniprot.org/uniprotkb/Q7L2J0" }, { "database": "PubMed", "id": "30559425", "url": "https://pubmed.ncbi.nlm.nih.gov/30559425" } ], "uniprot_canonical_ac": "Q7L2J0-1" }, { "start_pos": 585, "end_pos": 585, "sequence_org": "K", "sequence_mut": "A", "comment": "Decreased methyltransferase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q7L2J0", "url": "https://www.uniprot.org/uniprotkb/Q7L2J0" }, { "database": "PubMed", "id": "30559425", "url": "https://pubmed.ncbi.nlm.nih.gov/30559425" } ], "uniprot_canonical_ac": "Q7L2J0-1" }, { "start_pos": 674, "end_pos": 674, "sequence_org": "F", "sequence_mut": "A", "comment": "Strongly reduced methyltransferase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q7L2J0", "url": "https://www.uniprot.org/uniprotkb/Q7L2J0" }, { "database": "PubMed", "id": "30559425", "url": "https://pubmed.ncbi.nlm.nih.gov/30559425" } ], "uniprot_canonical_ac": "Q7L2J0-1" } ], "record_id": "pubmed.30559425", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "P-TEFb Activation by RBM7 Shapes a Pro-survival Transcriptional Response to Genotoxic Stress.", "journal": "Mol. Cell", "date": "2019", "authors": "Bugai A, Quaresma AJC, Friedel CC, Lenasi T, Duster R, Sibley CR, Fujinaga K, Kukanja P, Hennig T, Blasius M, Geyer M, Ule J, Dolken L, Barboric M", "reference": { "type": "PubMed", "id": "30824372", "url": "https://pubmed.ncbi.nlm.nih.gov/30824372" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7L2J0-1", "protein_name": "7SK snRNA methylphosphate capping enzyme", "gene_name": "MEPCE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y580-1", "protein_name": "RNA-binding protein 7", "gene_name": "RBM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4G0J3-1", "protein_name": "La-related protein 7", "gene_name": "LARP7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q7L2J0", "url": "https://www.uniprot.org/uniprotkb/Q7L2J0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 50, "end_pos": 50, "sequence_org": "K", "sequence_mut": "A", "comment": "Abrogates the interaction with 7SK small nuclear RNA (7SK); when associated with A-52 and A-54. Does not affect interaction between HEXIM1, CDK9 and 7SK small nuclear RNA (7SK); when associated with A-52 and A-54. Does not affect interaction with MEPCE and LARP7; when associated with A-52 and A-54. Decreases induction of P-TEFb-dependent DNA damage response (DDR); when associated with A-52 and A-54.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y580", "url": "https://www.uniprot.org/uniprotkb/Q9Y580" }, { "database": "PubMed", "id": "30824372", "url": "https://pubmed.ncbi.nlm.nih.gov/30824372" } ], "uniprot_canonical_ac": "Q9Y580-1" }, { "start_pos": 52, "end_pos": 52, "sequence_org": "F", "sequence_mut": "A", "comment": "Decreases affinity for RNA binding. Abrogates the interaction with 7SK small nuclear RNA (7SK); when associated with A-50 and A-54. Does not affect interaction between HEXIM1, CDK9 and 7SK small nuclear RNA (7SK); when associated with A-50 and A-54. Does not affect interaction with MEPCE and LARP7; when associated with A-50 and A-54. 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Rep.", "date": "2016", "authors": "Zhang Z, Zhang G, Kong C, Zhan B, Dong X, Man X", "reference": { "type": "PubMed", "id": "26763933", "url": "https://pubmed.ncbi.nlm.nih.gov/26763933" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N6R0-5", "protein_name": "eEF1A lysine and N-terminal methyltransferase", "gene_name": "METTL13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N6R0", "url": "https://www.uniprot.org/uniprotkb/Q8N6R0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26763933", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Immunogenic FEAT protein circulates in the bloodstream of cancer patients.", "journal": "J. 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Med.", "date": "2016", "authors": "Li Yan, Kobayashi Kyosuke, Mona Marwa M, Satomi Chikako, Okano Shinji, Inoue Hiroyuki, Tani Kenzaburo, Takahashi Atsushi", "reference": { "type": "PubMed", "id": "27659353", "url": "https://pubmed.ncbi.nlm.nih.gov/27659353" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N6R0-5", "protein_name": "eEF1A lysine and N-terminal methyltransferase", "gene_name": "METTL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q91YR5-3", "protein_name": "eEF1A lysine and N-terminal methyltransferase", "gene_name": "Mettl13", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N6R0", "url": "https://www.uniprot.org/uniprotkb/Q8N6R0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "biomarkers": [ { "best_biomarker_role": [ "risk" ], "biomarker_canonical_id": "BB1481", "assessed_biomarker_entity": [ 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